Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148340 | XP_003588901.1 | 94.406 | 143 | 7 | 1 | 1 | 143 | 1 | 142 | 2.89e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148340 | sp|Q93VM8|COPT5_ARATH | 55.102 | 147 | 61 | 3 | 1 | 143 | 1 | 146 | 3.60e-49 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148340 | G7I8Y2 | 94.406 | 143 | 7 | 1 | 1 | 143 | 1 | 142 | 1.38e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0148340 | -0.801907 | 7.213907e-49 | -8.615850e-47 |
| Msa0004880 | Msa0148340 | 0.812712 | 3.693851e-51 | -8.615850e-47 |
| Msa0005350 | Msa0148340 | 0.836738 | 7.848158e-57 | -8.615850e-47 |
| Msa0008410 | Msa0148340 | 0.818683 | 1.724711e-52 | -8.615850e-47 |
| Msa0011720 | Msa0148340 | 0.812358 | 4.412490e-51 | -8.615850e-47 |
| Msa0012440 | Msa0148340 | 0.814196 | 1.742206e-51 | -8.615850e-47 |
| Msa0032370 | Msa0148340 | 0.808513 | 2.984697e-50 | -8.615850e-47 |
| Msa0044020 | Msa0148340 | 0.803784 | 2.955380e-49 | -8.615850e-47 |
| Msa0050760 | Msa0148340 | 0.806858 | 6.707877e-50 | -8.615850e-47 |
| Msa0053900 | Msa0148340 | 0.860923 | 1.471889e-63 | -8.615850e-47 |
| Msa0057240 | Msa0148340 | 0.817400 | 3.362745e-52 | -8.615850e-47 |
| Msa0081230 | Msa0148340 | 0.815407 | 9.393782e-52 | -8.615850e-47 |
| Msa0097990 | Msa0148340 | 0.810579 | 1.074711e-50 | -8.615850e-47 |
| Msa0099730 | Msa0148340 | 0.834194 | 3.450608e-56 | -8.615850e-47 |
| Msa0105420 | Msa0148340 | 0.801138 | 1.037258e-48 | -8.615850e-47 |
| Msa0113160 | Msa0148340 | 0.803443 | 3.478024e-49 | -8.615850e-47 |
| Msa0120340 | Msa0148340 | 0.807338 | 5.306600e-50 | -8.615850e-47 |
| Msa0137040 | Msa0148340 | 0.801519 | 8.667045e-49 | -8.615850e-47 |
| Msa0140300 | Msa0148340 | 0.801353 | 9.370678e-49 | -8.615850e-47 |
| Msa0141100 | Msa0148340 | 0.809636 | 1.715973e-50 | -8.615850e-47 |
| Msa0143080 | Msa0148340 | 0.823253 | 1.529966e-53 | -8.615850e-47 |
| Msa0143380 | Msa0148340 | 0.804100 | 2.540811e-49 | -8.615850e-47 |
| Msa0148340 | Msa0148360 | 0.859463 | 4.065175e-63 | -8.615850e-47 |
| Msa0148340 | Msa0149560 | 0.817831 | 2.689377e-52 | -8.615850e-47 |
| Msa0148340 | Msa0151690 | 0.809000 | 2.348824e-50 | -8.615850e-47 |
| Msa0148340 | Msa0172350 | 0.815442 | 9.227487e-52 | -8.615850e-47 |
| Msa0148340 | Msa0185590 | 0.815143 | 1.075133e-51 | -8.615850e-47 |
| Msa0148340 | Msa0188680 | -0.816640 | 4.983189e-52 | -8.615850e-47 |
| Msa0148340 | Msa0191040 | 0.820914 | 5.331226e-53 | -8.615850e-47 |
| Msa0148340 | Msa0194020 | 0.831222 | 1.886887e-55 | -8.615850e-47 |
| Msa0148340 | Msa0205850 | 0.820626 | 6.209858e-53 | -8.615850e-47 |
| Msa0148340 | Msa0208520 | 0.821360 | 4.207986e-53 | -8.615850e-47 |
| Msa0148340 | Msa0227510 | 0.807951 | 3.932316e-50 | -8.615850e-47 |
| Msa0148340 | Msa0233340 | 0.821427 | 4.060631e-53 | -8.615850e-47 |
| Msa0148340 | Msa0235890 | 0.813853 | 2.074519e-51 | -8.615850e-47 |
| Msa0148340 | Msa0236440 | 0.846860 | 1.665516e-59 | -8.615850e-47 |
| Msa0148340 | Msa0236980 | 0.824323 | 8.591911e-54 | -8.615850e-47 |
| Msa0148340 | Msa0248980 | 0.820628 | 6.202609e-53 | -8.615850e-47 |
| Msa0148340 | Msa0259560 | 0.823891 | 1.085261e-53 | -8.615850e-47 |
| Msa0148340 | Msa0267760 | 0.806744 | 7.089484e-50 | -8.615850e-47 |
| Msa0148340 | Msa0270220 | -0.824489 | 7.850131e-54 | -8.615850e-47 |
| Msa0148340 | Msa0271040 | 0.836759 | 7.752867e-57 | -8.615850e-47 |
| Msa0148340 | Msa0277530 | 0.803409 | 3.534115e-49 | -8.615850e-47 |
| Msa0148340 | Msa0304290 | 0.803931 | 2.754365e-49 | -8.615850e-47 |
| Msa0148340 | Msa0304330 | 0.805621 | 1.222114e-49 | -8.615850e-47 |
| Msa0148340 | Msa0307830 | -0.830255 | 3.254540e-55 | -8.615850e-47 |
| Msa0148340 | Msa0309350 | 0.842877 | 1.976990e-58 | -8.615850e-47 |
| Msa0148340 | Msa0311690 | 0.820153 | 7.971829e-53 | -8.615850e-47 |
| Msa0148340 | Msa0328210 | 0.820395 | 7.018286e-53 | -8.615850e-47 |
| Msa0148340 | Msa0341180 | 0.800686 | 1.282958e-48 | -8.615850e-47 |
| Msa0148340 | Msa0355900 | 0.803584 | 3.251685e-49 | -8.615850e-47 |
| Msa0148340 | Msa0369570 | 0.815043 | 1.131344e-51 | -8.615850e-47 |
| Msa0148340 | Msa0371560 | 0.801352 | 9.378189e-49 | -8.615850e-47 |
| Msa0148340 | Msa0374850 | 0.818176 | 2.246489e-52 | -8.615850e-47 |
| Msa0148340 | Msa0375090 | 0.812714 | 3.689946e-51 | -8.615850e-47 |
| Msa0148340 | Msa0393950 | 0.800844 | 1.190941e-48 | -8.615850e-47 |
| Msa0148340 | Msa0415810 | 0.818767 | 1.650523e-52 | -8.615850e-47 |
| Msa0148340 | Msa0423360 | -0.803354 | 3.629201e-49 | -8.615850e-47 |
| Msa0148340 | Msa0426330 | 0.854787 | 9.750132e-62 | -8.615850e-47 |
| Msa0148340 | Msa0448750 | 0.832229 | 1.064952e-55 | -8.615850e-47 |
| Msa0148340 | Msa0464900 | 0.815291 | 9.968634e-52 | -8.615850e-47 |
| Msa0148340 | Msa0473080 | 0.803924 | 2.762883e-49 | -8.615850e-47 |
| Msa0148340 | Msa0480320 | 0.805246 | 1.464725e-49 | -8.615850e-47 |
| Msa0148340 | Msa0482680 | 0.800055 | 1.724824e-48 | -8.615850e-47 |
| Msa0148340 | Msa0485420 | 0.824940 | 6.146811e-54 | -8.615850e-47 |
| Msa0148340 | Msa0497420 | 0.832223 | 1.068399e-55 | -8.615850e-47 |
| Msa0148340 | Msa0531430 | 0.808005 | 3.831114e-50 | -8.615850e-47 |
| Msa0148340 | Msa0534590 | 0.851857 | 6.754341e-61 | -8.615850e-47 |
| Msa0148340 | Msa0535030 | 0.803645 | 3.157510e-49 | -8.615850e-47 |
| Msa0148340 | Msa0535060 | 0.804639 | 1.961134e-49 | -8.615850e-47 |
| Msa0148340 | Msa0547400 | 0.805955 | 1.039504e-49 | -8.615850e-47 |
| Msa0148340 | Msa0560470 | 0.821438 | 4.036829e-53 | -8.615850e-47 |
| Msa0148340 | Msa0568820 | 0.803024 | 4.246855e-49 | -8.615850e-47 |
| Msa0148340 | Msa0577220 | 0.822172 | 2.730995e-53 | -8.615850e-47 |
| Msa0148340 | Msa0590800 | 0.832404 | 9.637052e-56 | -8.615850e-47 |
| Msa0148340 | Msa0619070 | 0.802808 | 4.706311e-49 | -8.615850e-47 |
| Msa0148340 | Msa0619980 | 0.816396 | 5.650592e-52 | -8.615850e-47 |
| Msa0148340 | Msa0622340 | 0.811078 | 8.378878e-51 | -8.615850e-47 |
| Msa0148340 | Msa0628640 | 0.802603 | 5.187520e-49 | -8.615850e-47 |
| Msa0148340 | Msa0631120 | 0.845447 | 4.038943e-59 | -8.615850e-47 |
| Msa0148340 | Msa0639120 | 0.816687 | 4.862233e-52 | -8.615850e-47 |
| Msa0148340 | Msa0642910 | 0.800337 | 1.510911e-48 | -8.615850e-47 |
| Msa0148340 | Msa0650070 | 0.816229 | 6.159900e-52 | -8.615850e-47 |
| Msa0148340 | Msa0666030 | 0.809505 | 1.830323e-50 | -8.615850e-47 |
| Msa0148340 | Msa0669340 | 0.842454 | 2.561016e-58 | -8.615850e-47 |
| Msa0148340 | Msa0669850 | 0.806403 | 8.367619e-50 | -8.615850e-47 |
| Msa0148340 | Msa0684500 | 0.808309 | 3.300221e-50 | -8.615850e-47 |
| Msa0148340 | Msa0694250 | 0.804058 | 2.591822e-49 | -8.615850e-47 |
| Msa0148340 | Msa0706370 | 0.831247 | 1.860483e-55 | -8.615850e-47 |
| Msa0148340 | Msa0716450 | 0.821566 | 3.771567e-53 | -8.615850e-47 |
| Msa0148340 | Msa0717260 | 0.815337 | 9.736568e-52 | -8.615850e-47 |
| Msa0148340 | Msa0739120 | 0.804289 | 2.320204e-49 | -8.615850e-47 |
| Msa0148340 | Msa0741900 | 0.827383 | 1.612414e-54 | -8.615850e-47 |
| Msa0148340 | Msa0750350 | 0.803861 | 2.848649e-49 | -8.615850e-47 |
| Msa0148340 | Msa0754720 | -0.804760 | 1.850202e-49 | -8.615850e-47 |
| Msa0148340 | Msa0758320 | 0.809989 | 1.440422e-50 | -8.615850e-47 |
| Msa0148340 | Msa0767220 | 0.821088 | 4.861187e-53 | -8.615850e-47 |
| Msa0148340 | Msa0775440 | 0.822529 | 2.256386e-53 | -8.615850e-47 |
| Msa0148340 | Msa0790390 | -0.824743 | 6.839410e-54 | -8.615850e-47 |
| Msa0148340 | Msa0797120 | 0.807075 | 6.034991e-50 | -8.615850e-47 |
| Msa0148340 | Msa0799030 | 0.806300 | 8.794309e-50 | -8.615850e-47 |
| Msa0148340 | Msa0810020 | 0.836967 | 6.861187e-57 | -8.615850e-47 |
| Msa0148340 | Msa0812820 | 0.827932 | 1.190337e-54 | -8.615850e-47 |
| Msa0148340 | Msa0822990 | 0.825909 | 3.623800e-54 | -8.615850e-47 |
| Msa0148340 | Msa0837440 | 0.820363 | 7.137244e-53 | -8.615850e-47 |
| Msa0148340 | Msa0837980 | 0.802848 | 4.616994e-49 | -8.615850e-47 |
| Msa0148340 | Msa0853320 | 0.867739 | 1.095737e-65 | -8.615850e-47 |
| Msa0148340 | Msa0855310 | 0.816069 | 6.685456e-52 | -8.615850e-47 |
| Msa0148340 | Msa0862100 | 0.814299 | 1.653244e-51 | -8.615850e-47 |
| Msa0148340 | Msa0870620 | 0.814867 | 1.237798e-51 | -8.615850e-47 |
| Msa0148340 | Msa0877410 | 0.840332 | 9.267364e-58 | -8.615850e-47 |
| Msa0148340 | Msa0877420 | 0.816300 | 5.938653e-52 | -8.615850e-47 |
| Msa0148340 | Msa0880710 | 0.816641 | 4.979217e-52 | -8.615850e-47 |
| Msa0148340 | Msa0893810 | 0.804679 | 1.924181e-49 | -8.615850e-47 |
| Msa0148340 | Msa0899230 | 0.819278 | 1.263339e-52 | -8.615850e-47 |
| Msa0148340 | Msa0905550 | 0.813398 | 2.612320e-51 | -8.615850e-47 |
| Msa0148340 | Msa0908170 | 0.842614 | 2.321928e-58 | -8.615850e-47 |
| Msa0148340 | Msa0927670 | 0.809934 | 1.480102e-50 | -8.615850e-47 |
| Msa0148340 | Msa0931950 | 0.824219 | 9.087619e-54 | -8.615850e-47 |
| Msa0148340 | Msa0942730 | 0.822123 | 2.803667e-53 | -8.615850e-47 |
| Msa0148340 | Msa0945840 | 0.806510 | 7.942815e-50 | -8.615850e-47 |
| Msa0148340 | Msa0958020 | 0.813017 | 3.165836e-51 | -8.615850e-47 |
| Msa0148340 | Msa0959010 | 0.814924 | 1.202477e-51 | -8.615850e-47 |
| Msa0148340 | Msa0960160 | 0.835244 | 1.878906e-56 | -8.615850e-47 |
| Msa0148340 | Msa0966420 | 0.811295 | 7.517928e-51 | -8.615850e-47 |
| Msa0148340 | Msa0974530 | 0.802678 | 5.005823e-49 | -8.615850e-47 |
| Msa0148340 | Msa0979550 | 0.847521 | 1.097135e-59 | -8.615850e-47 |
| Msa0148340 | Msa0993530 | 0.821780 | 3.365152e-53 | -8.615850e-47 |
| Msa0148340 | Msa0999040 | 0.815210 | 1.038814e-51 | -8.615850e-47 |
| Msa0148340 | Msa1002620 | 0.811514 | 6.740714e-51 | -8.615850e-47 |
| Msa0148340 | Msa1033560 | 0.855119 | 7.810382e-62 | -8.615850e-47 |
| Msa0148340 | Msa1037700 | -0.822299 | 2.552043e-53 | -8.615850e-47 |
| Msa0148340 | Msa1040890 | 0.812664 | 3.783225e-51 | -8.615850e-47 |
| Msa0148340 | Msa1066440 | 0.819764 | 9.786616e-53 | -8.615850e-47 |
| Msa0148340 | Msa1073350 | 0.834793 | 2.441052e-56 | -8.615850e-47 |
| Msa0148340 | Msa1100720 | 0.820436 | 6.867047e-53 | -8.615850e-47 |
| Msa0148340 | Msa1112390 | 0.812932 | 3.304696e-51 | -8.615850e-47 |
| Msa0148340 | Msa1113850 | 0.824626 | 7.290152e-54 | -8.615850e-47 |
| Msa0148340 | Msa1130210 | -0.837800 | 4.196184e-57 | -8.615850e-47 |
| Msa0148340 | Msa1160400 | 0.827303 | 1.685581e-54 | -8.615850e-47 |
| Msa0148340 | Msa1172590 | 0.812992 | 3.206573e-51 | -8.615850e-47 |
| Msa0148340 | Msa1172670 | 0.805638 | 1.212019e-49 | -8.615850e-47 |
| Msa0148340 | Msa1203000 | 0.809481 | 1.852018e-50 | -8.615850e-47 |
| Msa0148340 | Msa1214880 | 0.810408 | 1.169703e-50 | -8.615850e-47 |
| Msa0148340 | Msa1217810 | 0.812013 | 5.247610e-51 | -8.615850e-47 |
| Msa0148340 | Msa1217860 | 0.806759 | 7.036495e-50 | -8.615850e-47 |
| Msa0148340 | Msa1218480 | 0.824137 | 9.498021e-54 | -8.615850e-47 |
| Msa0148340 | Msa1218650 | 0.811865 | 5.653538e-51 | -8.615850e-47 |
| Msa0148340 | Msa1219260 | 0.826020 | 3.411685e-54 | -8.615850e-47 |
| Msa0148340 | Msa1228650 | -0.814819 | 1.268874e-51 | -8.615850e-47 |
| Msa0148340 | Msa1255040 | -0.807113 | 5.924069e-50 | -8.615850e-47 |
| Msa0148340 | Msa1255280 | 0.812533 | 4.041527e-51 | -8.615850e-47 |
| Msa0148340 | Msa1258050 | 0.802506 | 5.432657e-49 | -8.615850e-47 |
| Msa0148340 | Msa1266960 | 0.821205 | 4.570087e-53 | -8.615850e-47 |
| Msa0148340 | Msa1300860 | 0.825763 | 3.924821e-54 | -8.615850e-47 |
| Msa0148340 | Msa1303160 | 0.826861 | 2.150146e-54 | -8.615850e-47 |
| Msa0148340 | Msa1331910 | 0.817028 | 4.077466e-52 | -8.615850e-47 |
| Msa0148340 | Msa1331920 | 0.816594 | 5.103585e-52 | -8.615850e-47 |
| Msa0148340 | Msa1362510 | 0.835358 | 1.758087e-56 | -8.615850e-47 |
| Msa0148340 | Msa1390310 | 0.822895 | 1.854649e-53 | -8.615850e-47 |
| Msa0148340 | Msa1395870 | 0.826462 | 2.676825e-54 | -8.615850e-47 |
| Msa0148340 | Msa1397340 | 0.837617 | 4.677333e-57 | -8.615850e-47 |
| Msa0148340 | Msa1399560 | 0.816821 | 4.538486e-52 | -8.615850e-47 |
| Msa0148340 | Msa1403580 | -0.823757 | 1.166289e-53 | -8.615850e-47 |
| Msa0148340 | Msa1405180 | 0.819650 | 1.039021e-52 | -8.615850e-47 |
| Msa0148340 | Msa1416390 | 0.824501 | 7.798951e-54 | -8.615850e-47 |
| Msa0148340 | Msa1419110 | 0.814283 | 1.667166e-51 | -8.615850e-47 |
| Msa0148340 | Msa1429420 | 0.813964 | 1.960065e-51 | -8.615850e-47 |
| Msa0148340 | Msa1439230 | 0.811343 | 7.340701e-51 | -8.615850e-47 |
| Msa0148340 | Msa1439960 | 0.812198 | 4.782799e-51 | -8.615850e-47 |
| Msa0148340 | Msa1440340 | 0.815730 | 7.960555e-52 | -8.615850e-47 |
| Msa0148340 | Msa1440600 | 0.808827 | 2.557541e-50 | -8.615850e-47 |
| Msa0148340 | Msa1443290 | -0.821755 | 3.411139e-53 | -8.615850e-47 |
| Msa0148340 | Msa1444450 | 0.802043 | 6.763892e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148340 | MtrunA17_Chr1g0150721 | 94.406 | 143 | 7 | 1 | 1 | 143 | 1 | 142 | 2.65e-97 | 276 |
| Msa0148340 | MtrunA17_Chr3g0136431 | 59.060 | 149 | 49 | 4 | 1 | 143 | 1 | 143 | 8.34e-55 | 169 |
| Msa0148340 | MtrunA17_Chr4g0008841 | 31.034 | 145 | 71 | 4 | 2 | 138 | 13 | 136 | 9.08e-18 | 74.3 |
| Msa0148340 | MtrunA17_Chr7g0240831 | 34.646 | 127 | 62 | 3 | 2 | 128 | 22 | 127 | 2.45e-15 | 68.2 |
| Msa0148340 | MtrunA17_Chr7g0240841 | 34.646 | 127 | 62 | 3 | 2 | 128 | 22 | 127 | 2.45e-15 | 68.2 |
| Msa0148340 | MtrunA17_Chr7g0240861 | 30.000 | 140 | 76 | 4 | 2 | 139 | 27 | 146 | 5.56e-15 | 67.4 |
| Msa0148340 | MtrunA17_Chr4g0032291 | 32.331 | 133 | 65 | 4 | 5 | 133 | 46 | 157 | 1.20e-14 | 67.0 |
| Msa0148340 | MtrunA17_Chr4g0032581 | 32.258 | 124 | 62 | 4 | 5 | 128 | 35 | 136 | 1.26e-13 | 63.9 |
| Msa0148340 | MtrunA17_Chr4g0032571 | 27.407 | 135 | 76 | 2 | 1 | 135 | 27 | 139 | 5.47e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148340 | AT5G20650.1 | 55.102 | 147 | 61 | 3 | 1 | 143 | 1 | 146 | 3.66e-50 | 157 |
| Msa0148340 | AT2G26975.1 | 32.847 | 137 | 65 | 3 | 1 | 131 | 24 | 139 | 2.30e-19 | 79.0 |
| Msa0148340 | AT5G59040.1 | 34.375 | 128 | 63 | 2 | 1 | 128 | 29 | 135 | 2.81e-17 | 73.9 |
| Msa0148340 | AT2G37925.1 | 31.250 | 128 | 70 | 2 | 1 | 128 | 29 | 138 | 2.00e-14 | 66.2 |
| Msa0148340 | AT5G59030.1 | 27.778 | 144 | 80 | 3 | 5 | 142 | 45 | 170 | 4.37e-13 | 63.2 |
| Msa0148340 | AT3G46900.1 | 26.761 | 142 | 78 | 4 | 7 | 142 | 35 | 156 | 9.32e-13 | 62.4 |
Find 30 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACATTCTACCAATATT+TGG | 0.138215 | 1_4:-8597741 | Msa0148340:CDS |
| GAGATTCGGACTCCTCTTCT+TGG | 0.249119 | 1_4:-8597656 | Msa0148340:CDS |
| ACCAATATTTGGAAAATATT+CGG | 0.254322 | 1_4:-8597730 | Msa0148340:CDS |
| TCCTCTTCTTGGGTTGAATA+AGG | 0.262656 | 1_4:-8597645 | Msa0148340:CDS |
| TGACACTCTTATTTGATTCA+TGG | 0.286816 | 1_4:-8597817 | Msa0148340:CDS |
| TGATGCACATGACATTATAT+TGG | 0.315744 | 1_4:-8597850 | Msa0148340:CDS |
| GATGCACATGACATTATATT+GGG | 0.333053 | 1_4:-8597849 | Msa0148340:CDS |
| CGTTTGGTTACTTCTTGTTT+AGG | 0.336421 | 1_4:-8597499 | Msa0148340:CDS |
| ATTCATGGAAAACCAATTCA+TGG | 0.342364 | 1_4:-8597802 | Msa0148340:CDS |
| TTGGCTATAATGTCGTTTAA+TGG | 0.343696 | 1_4:-8597554 | Msa0148340:CDS |
| TTTGGTGTGAATTCTGCTAT+TGG | 0.364233 | 1_4:-8597590 | Msa0148340:CDS |
| ATTGTGGTTGGTTTAACGTT+TGG | 0.388729 | 1_4:-8597515 | Msa0148340:CDS |
| TAGATAACTCGTCCATGAAT+TGG | 0.393378 | 1_4:+8597790 | None:intergenic |
| AGATTCGGACTCCTCTTCTT+GGG | 0.397569 | 1_4:-8597655 | Msa0148340:CDS |
| TTGGTGTGAATTCTGCTATT+GGG | 0.404245 | 1_4:-8597589 | Msa0148340:CDS |
| ATTTGGAAAATATTCGGATT+CGG | 0.414816 | 1_4:-8597724 | Msa0148340:CDS |
| AGTCGCCGGTGCCGGAGATT+CGG | 0.431491 | 1_4:-8597670 | Msa0148340:CDS |
| TATTGGGTATTTGTTGATGT+TGG | 0.437573 | 1_4:-8597573 | Msa0148340:CDS |
| TTGGGTTGAATAAGGTTTCG+AGG | 0.486516 | 1_4:-8597637 | Msa0148340:CDS |
| AGAAGAGGAGTCCGAATCTC+CGG | 0.488903 | 1_4:+8597659 | None:intergenic |
| GAGGACGCAGTCGCCGGTGC+CGG | 0.509370 | 1_4:-8597678 | Msa0148340:CDS |
| TGAGGGGAGGACGCAGTCGC+CGG | 0.519658 | 1_4:-8597684 | Msa0148340:CDS |
| ACCTTATTCAACCCAAGAAG+AGG | 0.545808 | 1_4:+8597644 | None:intergenic |
| GGAGTCCGAATCTCCGGCAC+CGG | 0.550760 | 1_4:+8597665 | None:intergenic |
| TCAGAGTGAAGAAGAGGCTG+CGG | 0.552122 | 1_4:-8597474 | Msa0148340:CDS |
| TAGGAGTCAGAGTGAAGAAG+AGG | 0.579273 | 1_4:-8597480 | Msa0148340:CDS |
| CACAAACTAAGCACATGCAC+AGG | 0.579857 | 1_4:+8597436 | None:intergenic |
| GAATAAGGTTTCGAGGAACA+AGG | 0.583225 | 1_4:-8597630 | Msa0148340:CDS |
| GCTATAATGTCGTTTAATGG+TGG | 0.610087 | 1_4:-8597551 | Msa0148340:CDS |
| ATGCACATGACATTATATTG+GGG | 0.668922 | 1_4:-8597848 | Msa0148340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCAATATTTGGAAAATATT+CGG | - | chr1_4:8597563-8597582 | Msa0148340:CDS | 20.0% |
| !! | TCCGAATATTTTCCAAATAT+TGG | + | chr1_4:8597567-8597586 | None:intergenic | 25.0% |
| ! | ATTTGGAAAATATTCGGATT+CGG | - | chr1_4:8597569-8597588 | Msa0148340:CDS | 25.0% |
| !!! | GTTTTTGAATCGGTTTTATT+TGG | - | chr1_4:8597685-8597704 | Msa0148340:CDS | 25.0% |
| TGATGCACATGACATTATAT+TGG | - | chr1_4:8597443-8597462 | Msa0148340:CDS | 30.0% | |
| GATGCACATGACATTATATT+GGG | - | chr1_4:8597444-8597463 | Msa0148340:CDS | 30.0% | |
| ATGCACATGACATTATATTG+GGG | - | chr1_4:8597445-8597464 | Msa0148340:CDS | 30.0% | |
| ! | TGACACTCTTATTTGATTCA+TGG | - | chr1_4:8597476-8597495 | Msa0148340:CDS | 30.0% |
| ATTCATGGAAAACCAATTCA+TGG | - | chr1_4:8597491-8597510 | Msa0148340:CDS | 30.0% | |
| TGCAACATTCTACCAATATT+TGG | - | chr1_4:8597552-8597571 | Msa0148340:CDS | 30.0% | |
| ! | TATTGGGTATTTGTTGATGT+TGG | - | chr1_4:8597720-8597739 | Msa0148340:CDS | 30.0% |
| ! | TTGGCTATAATGTCGTTTAA+TGG | - | chr1_4:8597739-8597758 | Msa0148340:CDS | 30.0% |
| TAGATAACTCGTCCATGAAT+TGG | + | chr1_4:8597506-8597525 | None:intergenic | 35.0% | |
| ! | ATTCGGTTGAAGTTTTTCTC+TGG | - | chr1_4:8597586-8597605 | Msa0148340:CDS | 35.0% |
| ! | TTGAAGTTTTTCTCTGGTGA+GGG | - | chr1_4:8597592-8597611 | Msa0148340:CDS | 35.0% |
| ! | GAGGAACAAGGTTTTTGAAT+CGG | - | chr1_4:8597675-8597694 | Msa0148340:CDS | 35.0% |
| ! | TTTGGTGTGAATTCTGCTAT+TGG | - | chr1_4:8597703-8597722 | Msa0148340:CDS | 35.0% |
| TTGGTGTGAATTCTGCTATT+GGG | - | chr1_4:8597704-8597723 | Msa0148340:CDS | 35.0% | |
| ! | GCTATAATGTCGTTTAATGG+TGG | - | chr1_4:8597742-8597761 | Msa0148340:CDS | 35.0% |
| !! | GTTTAATGGTGGTGTTTTTG+TGG | - | chr1_4:8597753-8597772 | Msa0148340:CDS | 35.0% |
| !! | ATTGTGGTTGGTTTAACGTT+TGG | - | chr1_4:8597778-8597797 | Msa0148340:CDS | 35.0% |
| ! | CGTTTGGTTACTTCTTGTTT+AGG | - | chr1_4:8597794-8597813 | Msa0148340:CDS | 35.0% |
| ! | GTTGAAGTTTTTCTCTGGTG+AGG | - | chr1_4:8597591-8597610 | Msa0148340:CDS | 40.0% |
| ! | TGAAGTTTTTCTCTGGTGAG+GGG | - | chr1_4:8597593-8597612 | Msa0148340:CDS | 40.0% |
| !! | TCCTCTTCTTGGGTTGAATA+AGG | - | chr1_4:8597648-8597667 | Msa0148340:CDS | 40.0% |
| ACCTTATTCAACCCAAGAAG+AGG | + | chr1_4:8597652-8597671 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAATAAGGTTTCG+AGG | - | chr1_4:8597656-8597675 | Msa0148340:CDS | 40.0% |
| GAATAAGGTTTCGAGGAACA+AGG | - | chr1_4:8597663-8597682 | Msa0148340:CDS | 40.0% | |
| !! | TGGTGTTTTTGTGGCTATTG+TGG | - | chr1_4:8597762-8597781 | Msa0148340:CDS | 40.0% |
| ! | GTTTTTGTGGCTATTGTGGT+TGG | - | chr1_4:8597766-8597785 | Msa0148340:CDS | 40.0% |
| AGATTCGGACTCCTCTTCTT+GGG | - | chr1_4:8597638-8597657 | Msa0148340:CDS | 45.0% | |
| TAGGAGTCAGAGTGAAGAAG+AGG | - | chr1_4:8597813-8597832 | Msa0148340:CDS | 45.0% | |
| ! | AGTTTTTCTCTGGTGAGGGG+AGG | - | chr1_4:8597596-8597615 | Msa0148340:CDS | 50.0% |
| AGAAGAGGAGTCCGAATCTC+CGG | + | chr1_4:8597637-8597656 | None:intergenic | 50.0% | |
| GAGATTCGGACTCCTCTTCT+TGG | - | chr1_4:8597637-8597656 | Msa0148340:CDS | 50.0% | |
| TCAGAGTGAAGAAGAGGCTG+CGG | - | chr1_4:8597819-8597838 | Msa0148340:CDS | 50.0% | |
| ! | AGTCGCCGGTGCCGGAGATT+CGG | - | chr1_4:8597623-8597642 | Msa0148340:CDS | 65.0% |
| GGAGTCCGAATCTCCGGCAC+CGG | + | chr1_4:8597631-8597650 | None:intergenic | 65.0% | |
| TGAGGGGAGGACGCAGTCGC+CGG | - | chr1_4:8597609-8597628 | Msa0148340:CDS | 70.0% | |
| GAGGACGCAGTCGCCGGTGC+CGG | - | chr1_4:8597615-8597634 | Msa0148340:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8597442 | 8597873 | 8597442 | ID=Msa0148340;Name=Msa0148340 |
| chr1_4 | mRNA | 8597442 | 8597873 | 8597442 | ID=Msa0148340-mRNA-1;Parent=Msa0148340;Name=Msa0148340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|143 |
| chr1_4 | exon | 8597442 | 8597873 | 8597442 | ID=Msa0148340-mRNA-1:exon:3696;Parent=Msa0148340-mRNA-1 |
| chr1_4 | CDS | 8597442 | 8597873 | 8597442 | ID=Msa0148340-mRNA-1:cds;Parent=Msa0148340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
