AlfalfaGEDB | Msa0259560

M. sativa cultivar zhongmu-4 / Msa0259560

KEGG: K00648
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF08545.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259560	XP_013465608.1	94.192	396	14	3	1	387	1	396	0.0	751

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259560	sp\|P49243\|FABH_ARATH	70.370	405	99	6	1	386	1	403	0.0	570

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259560	A0A072VC78	94.192	396	14	3	1	387	1	396	0.0	751

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0259560	-0.839317	1.703172e-57	-8.615850e-47
Msa0001950	Msa0259560	0.824469	7.935022e-54	-8.615850e-47
Msa0003470	Msa0259560	0.855635	5.526476e-62	-8.615850e-47
Msa0008340	Msa0259560	0.816457	5.474856e-52	-8.615850e-47
Msa0008410	Msa0259560	0.844759	6.194537e-59	-8.615850e-47
Msa0008830	Msa0259560	0.842798	2.074536e-58	-8.615850e-47
Msa0008850	Msa0259560	0.806976	6.331105e-50	-8.615850e-47
Msa0011720	Msa0259560	0.837039	6.574119e-57	-8.615850e-47
Msa0011850	Msa0259560	0.818655	1.749932e-52	-8.615850e-47
Msa0017120	Msa0259560	0.818027	2.427901e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259560	MtrunA17_Chr2g0333881	94.192	396	14	3	1	387	1	396	0.0	751
Msa0259560	MtrunA17_Chr4g0001461	62.245	392	98	1	46	387	1	392	3.68e-172	486
Msa0259560	MtrunA17_Chr5g0396921	87.440	207	7	1	181	387	22	209	1.01e-126	363

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259560	AT1G62640.2	70.370	405	99	6	1	386	1	403	0.0	570
Msa0259560	AT1G62640.1	70.370	405	99	6	1	386	1	403	0.0	570

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Find 132 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGCAGCATGGACAG+TGG	0.678207	2_2:+56608818	Msa0259560:three_prime_UTR
AACACGCCGCTTGCGAATCC+CGG	0.477291	2_2:-56605650	None:intergenic
AACCAATCAATACTAGATAC+AGG	0.479548	2_2:-56608063	None:intergenic
AACTGCTTCATCTAAAGCTA+AGG	0.466667	2_2:-56608397	None:intergenic
AAGATATTGAAATTCCTATG+CGG	0.752063	2_2:-56608935	None:intergenic
AATAAATGCAGGCAAACCAA+AGG	0.611891	2_2:+56608280	Msa0259560:intron
AATAATGCATTTGATTCAAA+TGG	0.394336	2_2:+56607910	Msa0259560:CDS
AATATAAGGTCAATATCATC+AGG	0.496448	2_2:-56606362	None:intergenic
AATATGAATTGAAGACAAAA+AGG	0.358662	2_2:-56608678	None:intergenic
AATGGATATATGCTCGCACC+GGG	0.571317	2_2:+56605632	Msa0259560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAACCACAATTGCAA+AGG	+	chr2_2:56604496-56604515	Msa0259560:intron	30.0%
AAAAGAACCACAATTGCAAA+GGG	+	chr2_2:56604497-56604516	Msa0259560:intron	30.0%
CAAATATGTATGATGCATTG+AGG	-	chr2_2:56604639-56604658	None:intergenic	30.0%
TTTATTTGAATCTGAACCGT+TGG	+	chr2_2:56604660-56604679	Msa0259560:intron	30.0%
GTGGCAAAATAATTAACCAA+CGG	-	chr2_2:56604679-56604698	None:intergenic	30.0%
GACAAGAAAAACAACAACAT+TGG	+	chr2_2:56604790-56604809	Msa0259560:five_prime_UTR	30.0%
ATAGCATATGAGAATGAAGA+AGG	-	chr2_2:56604926-56604945	None:intergenic	30.0%
CAAATCAAATCAAAGTGGTA+TGG	-	chr2_2:56604986-56605005	None:intergenic	30.0%
GATGATTCTTAAGCTAAACA+TGG	+	chr2_2:56605393-56605412	Msa0259560:intron	30.0%
GTCATAATAAGAAGAATGCT+AGG	+	chr2_2:56605454-56605473	Msa0259560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	56603494	56608959	56603494	ID=Msa0259560;Name=Msa0259560
chr2_2	mRNA	56603494	56608959	56603494	ID=Msa0259560-mRNA-1;Parent=Msa0259560;Name=Msa0259560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=508\|0.88\|0.9\|1\|0.77\|0.7\|10\|447\|387
chr2_2	exon	56603494	56603647	56603494	ID=Msa0259560-mRNA-1:exon:17161;Parent=Msa0259560-mRNA-1
chr2_2	exon	56603668	56603718	56603668	ID=Msa0259560-mRNA-1:exon:17162;Parent=Msa0259560-mRNA-1
chr2_2	exon	56604706	56605165	56604706	ID=Msa0259560-mRNA-1:exon:17163;Parent=Msa0259560-mRNA-1
chr2_2	exon	56605545	56605679	56605545	ID=Msa0259560-mRNA-1:exon:17164;Parent=Msa0259560-mRNA-1
chr2_2	exon	56606294	56606430	56606294	ID=Msa0259560-mRNA-1:exon:17165;Parent=Msa0259560-mRNA-1
chr2_2	exon	56607054	56607159	56607054	ID=Msa0259560-mRNA-1:exon:17166;Parent=Msa0259560-mRNA-1
chr2_2	exon	56607238	56607356	56607238	ID=Msa0259560-mRNA-1:exon:17167;Parent=Msa0259560-mRNA-1
chr2_2	exon	56607728	56607792	56607728	ID=Msa0259560-mRNA-1:exon:17168;Parent=Msa0259560-mRNA-1
chr2_2	exon	56607876	56608098	56607876	ID=Msa0259560-mRNA-1:exon:17169;Parent=Msa0259560-mRNA-1
chr2_2	exon	56608291	56608959	56608291	ID=Msa0259560-mRNA-1:exon:17170;Parent=Msa0259560-mRNA-1
chr2_2	five_prime_UTR	56603494	56603647	56603494	ID=Msa0259560-mRNA-1:five_prime_utr;Parent=Msa0259560-mRNA-1
chr2_2	five_prime_UTR	56603668	56603718	56603668	ID=Msa0259560-mRNA-1:five_prime_utr;Parent=Msa0259560-mRNA-1
chr2_2	five_prime_UTR	56604706	56605008	56604706	ID=Msa0259560-mRNA-1:five_prime_utr;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56605009	56605165	56605009	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56605545	56605679	56605545	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56606294	56606430	56606294	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56607054	56607159	56607054	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56607238	56607356	56607238	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56607728	56607792	56607728	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56607876	56608098	56607876	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	CDS	56608291	56608512	56608291	ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2	three_prime_UTR	56608513	56608959	56608513	ID=Msa0259560-mRNA-1:three_prime_utr;Parent=Msa0259560-mRNA-1

Gene Sequence

>Msa0259560

ATGGCAAATGCATCTGGGTTATTCTCTACTCCTAACTTCAGAGTAAGCTTTCCTTCTCTCTCTACCACTCATCGATTTCAAAATTTCAAAGTTTTTTGCTCTGGAACTATCGAAGGTGCTGCTTCCACTCTCCCCCTTCAAAATCTCCAAAACCCAGGGTGCAAGTTGGTTGGATGTGGTTCTGCTTTGCCAGCTCTTCAGATTACTAATGAAGATCTTTCAAAAGTTGTTGATACTAGTGATGAATGGATATATGCTCGCACCGGGATTCGCAAGCGGCGTGTTCTTTCCGGTGAAGAGAGCTTGACAACCATAGCGGGGGAGGCAGCTAAGAAAGCTCTCGAGATGGCAAAAGTTCATCCTGATGATATTGACCTTATATTAATGTGCACATCGACACCGGATGATCTTTTTGGTAGCGCTCCACAGATTCAACAACAACTTGGCTGCACAAAGAATCCATGGTGTTATGATCTTACGGCTGCTTGTAGTGGATTTGTGTCGGGTTTACTATCAGCGGCATGTCACATTAGGGGGGGTGGATTTCAAAATGTCCTAGTTATTGGAGCTGATGCGCTTTCACGGTATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGTGATGCTGCTGGTGCTGTAGTAGTACAGGCTTGCGATATTGAGGAAGATGGTTTATTTGGTTTTGATGTGCATAGTGATGGTAGTGGTGTAAGGCATTTGAATGCTGGCATTAAAGTTGACGAGTCAAATAATGCATTTGATTCAAATGGTTCTTTGCGGGGTTTTCCTCCCAAGAAGTCCTCGTATTCGTGCATTCAAATGAATGGAAAAGAAGTCTTTCGCTTTGCTGTACGATGTGTGCCACAGACGATCGAATCTGCCCTTGAAAAGGCTGGTCTTCCTGTATCTAGTATTGATTGGTTACTTCTACATCAGGCAAACCAAAGGATTATTGATGCAGCTGCGACTCGGCTAGAAATCCCCTCAGAAAAGGTGATATCGAATTTGTCTGATTATGGTAACACAAGTGCAGCTTCCATTCCCTTAGCTTTAGATGAAGCAGTTAGAAGTGGCATGGTTAAGCCAGGACAAACTATTGCAGCTGCTGGCTTTGGTGCTGGTCTTACTTGGGGTTCGGCAATTGTTCGTTGGGGCTGA

Protein sequence

>Msa0259560

MANASGLFSTPNFRVSFPSLSTTHRFQNFKVFCSGTIEGAASTLPLQNLQNPGCKLVGCGSALPALQITNEDLSKVVDTSDEWIYARTGIRKRRVLSGEESLTTIAGEAAKKALEMAKVHPDDIDLILMCTSTPDDLFGSAPQIQQQLGCTKNPWCYDLTAACSGFVSGLLSAACHIRGGGFQNVLVIGADALSRYVDWTDRGTCILFGDAAGAVVVQACDIEEDGLFGFDVHSDGSGVRHLNAGIKVDESNNAFDSNGSLRGFPPKKSSYSCIQMNGKEVFRFAVRCVPQTIESALEKAGLPVSSIDWLLLHQANQRIIDAAATRLEIPSEKVISNLSDYGNTSAASIPLALDEAVRSGMVKPGQTIAAAGFGAGLTWGSAIVRWG*