AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259560 MtrunA17_Chr2g0333881 94.192 396 14 3 1 387 1 396 0.0 751
Msa0259560 MtrunA17_Chr4g0001461 62.245 392 98 1 46 387 1 392 3.68e-172 486
Msa0259560 MtrunA17_Chr5g0396921 87.440 207 7 1 181 387 22 209 1.01e-126 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259560 AT1G62640.2 70.370 405 99 6 1 386 1 403 0.0 570
Msa0259560 AT1G62640.1 70.370 405 99 6 1 386 1 403 0.0 570

Find 132 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATGTATGTTTAAGAAAT+TGG 0.092455 2_2:-56608588 None:intergenic
CGCAAGCGGCGTGTTCTTTC+CGG 0.182127 2_2:+56605658 Msa0259560:CDS
ATTGAGGAAGATGGTTTATT+TGG 0.185874 2_2:+56607737 Msa0259560:CDS
TTTCAAAATGTCCTAGTTAT+TGG 0.207372 2_2:+56607246 Msa0259560:CDS
GATTTGAGTTTGTGTTCTTT+TGG 0.232668 2_2:-56603503 None:intergenic
ACTTTGATTTGATTTGTAAA+TGG 0.257741 2_2:+56604990 Msa0259560:exon
ATATCGAATTTGTCTGATTA+TGG 0.266100 2_2:+56608351 Msa0259560:CDS
GCTTTGGTGCTGGTCTTACT+TGG 0.294251 2_2:+56608463 Msa0259560:CDS
TATTATTATATGCTATAGTT+TGG 0.312680 2_2:-56604950 None:intergenic
CGCTTTCACGGTATGTTGAT+TGG 0.314748 2_2:+56607277 Msa0259560:CDS
CTTAAACATACATGTAGAAA+TGG 0.315593 2_2:+56608595 Msa0259560:three_prime_UTR
AGGTTGCTCCGAAACGATTT+TGG 0.320930 2_2:-56604824 None:intergenic
GCACGAATACGAGGACTTCT+TGG 0.331899 2_2:-56607953 None:intergenic
TATCAGCGGCATGTCACATT+AGG 0.332316 2_2:+56607136 Msa0259560:CDS
GGGTTCGGCAATTGTTCGTT+GGG 0.335349 2_2:+56608485 Msa0259560:CDS
TTGTAAATGGCAAATGCATC+TGG 0.341691 2_2:+56605003 Msa0259560:exon
TAAAACAAATGTCTACAATT+AGG 0.349874 2_2:-56608896 None:intergenic
ACATGTATGTTTAAGAAATT+GGG 0.356302 2_2:-56608587 None:intergenic
GGGGTTCGGCAATTGTTCGT+TGG 0.358542 2_2:+56608484 Msa0259560:CDS
AATATGAATTGAAGACAAAA+AGG 0.358662 2_2:-56608678 None:intergenic
TCGATGTGCACATTAATATA+AGG 0.359570 2_2:-56606376 None:intergenic
ATCAGCGGCATGTCACATTA+GGG 0.361989 2_2:+56607137 Msa0259560:CDS
GGAAAACTGGAGTAGTATAT+TGG 0.362954 2_2:+56604725 Msa0259560:five_prime_UTR
GCAGCTGCTGGCTTTGGTGC+TGG 0.366517 2_2:+56608453 Msa0259560:CDS
ACTATTGCAGCTGCTGGCTT+TGG 0.367399 2_2:+56608447 Msa0259560:CDS
GAAATGAAATGAATGATCTT+AGG 0.369399 2_2:-56604844 None:intergenic
TGATTCAAATGGTTCTTTGC+GGG 0.369486 2_2:+56607921 Msa0259560:CDS
TCCCGCTTCCATTCCATCAT+TGG 0.376152 2_2:+56603557 Msa0259560:five_prime_UTR
TCTTCAATTCATATTGTCCT+TGG 0.384986 2_2:+56608686 Msa0259560:three_prime_UTR
TTCCTGTATCTAGTATTGAT+TGG 0.387690 2_2:+56608061 Msa0259560:CDS
CTTTGGTGCTGGTCTTACTT+GGG 0.392366 2_2:+56608464 Msa0259560:CDS
AATAATGCATTTGATTCAAA+TGG 0.394336 2_2:+56607910 Msa0259560:CDS
TTCCTCAACCAAAATCGTTT+CGG 0.395190 2_2:+56604816 Msa0259560:five_prime_UTR
TGCTGGTCTTACTTGGGGTT+CGG 0.404630 2_2:+56608470 Msa0259560:CDS
CAGCTGCATCAATAATCCTT+TGG 0.407283 2_2:-56608296 None:intergenic
GGAAAGCTTACTCTGAAGTT+AGG 0.415230 2_2:-56605039 None:intergenic
GTGAAAGGGAAGTGGAAAAC+TGG 0.416216 2_2:+56604712 Msa0259560:five_prime_UTR
TTAAACATACATGTAGAAAT+GGG 0.418626 2_2:+56608596 Msa0259560:three_prime_UTR
AATGTCTACAATTAGGTAGT+TGG 0.430570 2_2:-56608889 None:intergenic
TCTCGAACTCGCTCGCTACT+CGG 0.444019 2_2:+56603592 Msa0259560:five_prime_UTR
TATTCGTGCATTCAAATGAA+TGG 0.444635 2_2:+56607967 Msa0259560:CDS
TGATTGGTTACTTCTACATC+AGG 0.454973 2_2:+56608077 Msa0259560:CDS
ACAAGCCAGCTGGAAAGAAA+AGG 0.461054 2_2:-56603666 None:intergenic
TTGGAGCTGATGCGCTTTCA+CGG 0.462117 2_2:+56607265 Msa0259560:CDS
ATACATGTAGAAATGGGGTT+TGG 0.462126 2_2:+56608602 Msa0259560:three_prime_UTR
AACTGCTTCATCTAAAGCTA+AGG 0.466667 2_2:-56608397 None:intergenic
GATCGAATCTGCCCTTGAAA+AGG 0.468393 2_2:+56608032 Msa0259560:CDS
GCAGCTGCAATAGTTTGTCC+TGG 0.469553 2_2:-56608438 None:intergenic
TGCTTGTAGTGGATTTGTGT+CGG 0.472440 2_2:+56607107 Msa0259560:CDS
TTGATTCAAATGGTTCTTTG+CGG 0.473758 2_2:+56607920 Msa0259560:CDS
TCACGTAGGCATTTGAATGC+TGG 0.476282 2_2:+56607868 Msa0259560:intron
AACACGCCGCTTGCGAATCC+CGG 0.477291 2_2:-56605650 None:intergenic
TCCATGGTGTTATGATCTTA+CGG 0.478973 2_2:+56607083 Msa0259560:CDS
GCTTGTAGTGGATTTGTGTC+GGG 0.479026 2_2:+56607108 Msa0259560:CDS
AACCAATCAATACTAGATAC+AGG 0.479548 2_2:-56608063 None:intergenic
GGAATGGAAGCGGGAACAAA+AGG 0.484804 2_2:-56603549 None:intergenic
GAGAGCTTGACAACCATAGC+GGG 0.486425 2_2:+56606299 Msa0259560:CDS
TTGCGATTTGACAAGCCAGC+TGG 0.489095 2_2:-56603676 None:intergenic
AGTTGGAAAGTTGCCAATGA+TGG 0.491870 2_2:-56603570 None:intergenic
GGGTGCAAGTTGGTTGGATG+TGG 0.493443 2_2:+56605544 Msa0259560:intron
AATATAAGGTCAATATCATC+AGG 0.496448 2_2:-56606362 None:intergenic
GATCTTACGGCTGCTTGTAG+TGG 0.496473 2_2:+56607096 Msa0259560:CDS
GCTTGCGATATTGAGGAAGA+TGG 0.496581 2_2:+56607728 Msa0259560:CDS
CGATGAGTGGTAGAGAGAGA+AGG 0.504271 2_2:-56605060 None:intergenic
GCGCATCAGCTCCAATAACT+AGG 0.506447 2_2:-56607257 None:intergenic
CTCGAACTCGCTCGCTACTC+GGG 0.508392 2_2:+56603593 Msa0259560:five_prime_UTR
GGACAAACTATTGCAGCTGC+TGG 0.512164 2_2:+56608441 Msa0259560:CDS
GCTAGAAATCCCCTCAGAAA+AGG 0.513439 2_2:+56608326 Msa0259560:CDS
CACGAATACGAGGACTTCTT+GGG 0.514096 2_2:-56607952 None:intergenic
ACTGCAGGCTTGCGATATTG+AGG 0.518538 2_2:+56607721 Msa0259560:intron
ATAGCATATGAGAATGAAGA+AGG 0.518897 2_2:-56604923 None:intergenic
TTTGGTGCTGGTCTTACTTG+GGG 0.522486 2_2:+56608465 Msa0259560:CDS
TAGCGAGCGAGTTCGAGAGT+TGG 0.522820 2_2:-56603587 None:intergenic
CAAGCCAGCTGGAAAGAAAA+GGG 0.523886 2_2:-56603665 None:intergenic
CAAATCAAATCAAAGTGGTA+TGG 0.529839 2_2:-56604983 None:intergenic
GCCAATGATGGAATGGAAGC+GGG 0.531699 2_2:-56603558 None:intergenic
GTAATGAGTTGTGGAAGTGC+TGG 0.531918 2_2:-56608656 None:intergenic
TGTGGAAGTGCTGGATGCTC+CGG 0.534784 2_2:-56608647 None:intergenic
GGGTTTGGTTAGTTTGCACT+AGG 0.538487 2_2:+56608617 Msa0259560:three_prime_UTR
TGCTGGTGCTGTAGTAGTAC+AGG 0.544366 2_2:+56607335 Msa0259560:CDS
AGTCATCTGTGAAAGGGAAG+TGG 0.545399 2_2:+56604704 Msa0259560:intron
GAATGGATATATGCTCGCAC+CGG 0.545418 2_2:+56605631 Msa0259560:CDS
CGTGTCAGTCATCTGTGAAA+GGG 0.546349 2_2:+56604698 Msa0259560:intron
TCATTAGTAATCTGAAGAGC+TGG 0.548424 2_2:-56605577 None:intergenic
AGAAGTGGCATGGTTAAGCC+AGG 0.552428 2_2:+56608420 Msa0259560:CDS
ACGTGTCAGTCATCTGTGAA+AGG 0.553323 2_2:+56604697 Msa0259560:intron
TGCCAATGATGGAATGGAAG+CGG 0.555032 2_2:-56603559 None:intergenic
TGTAAATGGCAAATGCATCT+GGG 0.556330 2_2:+56605004 Msa0259560:exon
ATTCAAGGGTGCAAGTTGGT+TGG 0.559414 2_2:+56605538 Msa0259560:intron
TTAGATGAAGCAGTTAGAAG+TGG 0.559716 2_2:+56608405 Msa0259560:CDS
GATTCAAATGGTTCTTTGCG+GGG 0.563217 2_2:+56607922 Msa0259560:CDS
TATGAGAATGAAGAAGGAGA+AGG 0.563755 2_2:-56604917 None:intergenic
TTGCAGATTCAACAACAACT+TGG 0.564894 2_2:+56607048 Msa0259560:intron
TTATTGATGCAGCTGCGACT+CGG 0.566649 2_2:+56608304 Msa0259560:CDS
CTCGCACCGGGATTCGCAAG+CGG 0.568254 2_2:+56605644 Msa0259560:CDS
ATAGTGATGGTAGTGGTGTA+AGG 0.570485 2_2:+56607771 Msa0259560:CDS
AATGGATATATGCTCGCACC+GGG 0.571317 2_2:+56605632 Msa0259560:CDS
GAATCTGCCCTTGAAAAGGC+TGG 0.573884 2_2:+56608036 Msa0259560:CDS
ACTGCTTCATCTAAAGCTAA+GGG 0.574656 2_2:-56608396 None:intergenic
GTTTGCACTAGGATAATAGC+CGG 0.577922 2_2:+56608628 Msa0259560:three_prime_UTR
TTGTTGATACTAGTGATGAA+TGG 0.581054 2_2:+56605614 Msa0259560:CDS
TCTACAATTAGGTAGTTGGT+TGG 0.583074 2_2:-56608885 None:intergenic
TTCATCTAAAGCTAAGGGAA+TGG 0.584089 2_2:-56608391 None:intergenic
TTGGCTGCACAAAGAATCCA+TGG 0.586209 2_2:+56607067 Msa0259560:CDS
ATTAATGTGCACATCGACAC+CGG 0.593248 2_2:+56606382 Msa0259560:CDS
TAAACATACATGTAGAAATG+GGG 0.593624 2_2:+56608597 Msa0259560:three_prime_UTR
TTTGATTCAAGGGTGCAAGT+TGG 0.600224 2_2:+56605534 Msa0259560:intron
GAAAGTTGCCAATGATGGAA+TGG 0.600547 2_2:-56603565 None:intergenic
ATCTATTAAATGCACCGCAT+AGG 0.603935 2_2:+56608921 Msa0259560:three_prime_UTR
AATAAATGCAGGCAAACCAA+AGG 0.611891 2_2:+56608280 Msa0259560:intron
AGCTAAGAAAGCTCTCGAGA+TGG 0.612802 2_2:+56606328 Msa0259560:CDS
GATGTGCATAGTGATGGTAG+TGG 0.613638 2_2:+56607764 Msa0259560:CDS
TGTGTCGGGTTTACTATCAG+CGG 0.619781 2_2:+56607122 Msa0259560:CDS
CATTTGAATGCACGAATACG+AGG 0.622723 2_2:-56607962 None:intergenic
ATGTTGATTGGACAGACAGA+GGG 0.624507 2_2:+56607289 Msa0259560:CDS
TGAAGCAGTTAGAAGTGGCA+TGG 0.625016 2_2:+56608410 Msa0259560:CDS
ATTTACAAATCAAATCAAAG+TGG 0.628853 2_2:-56604988 None:intergenic
AGGGCAGATTCGATCGTCTG+TGG 0.637559 2_2:-56608024 None:intergenic
GGTTCGGCAATTGTTCGTTG+GGG 0.641097 2_2:+56608486 Msa0259560:CDS
TCAGCGGCATGTCACATTAG+GGG 0.641346 2_2:+56607138 Msa0259560:CDS
GAATACGAGGACTTCTTGGG+AGG 0.657174 2_2:-56607949 None:intergenic
TATGTTGATTGGACAGACAG+AGG 0.663522 2_2:+56607288 Msa0259560:CDS
CTTCAAAATCTCCAAAACCC+AGG 0.671277 2_2:+56605144 Msa0259560:CDS
AAACAATGCAGCATGGACAG+TGG 0.678207 2_2:+56608818 Msa0259560:three_prime_UTR
GAGCTTGACAACCATAGCGG+GGG 0.680138 2_2:+56606301 Msa0259560:CDS
CTGAGTCGCATATTTCACAT+CGG 0.680613 2_2:+56608509 Msa0259560:exon
AGAGCTTGACAACCATAGCG+GGG 0.681161 2_2:+56606300 Msa0259560:CDS
GCCGTAAGATCATAACACCA+TGG 0.699786 2_2:-56607084 None:intergenic
AGAGAGCTTGACAACCATAG+CGG 0.710770 2_2:+56606298 Msa0259560:CDS
TACTTGACAAAACAAGACCA+AGG 0.718758 2_2:-56608703 None:intergenic
GAAGGAGAAATACAACAGAG+AGG 0.728334 2_2:-56604899 None:intergenic
AAGATATTGAAATTCCTATG+CGG 0.752063 2_2:-56608935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAAAATTAATTTTTT+GGG + chr2_2:56604227-56604246 Msa0259560:intron 0.0%
!!! ATGAATTTTTATATTTTTGA+CGG + chr2_2:56604175-56604194 Msa0259560:intron 10.0%
!!! AAAAAAAATTAATTTTTTGG+GGG + chr2_2:56604229-56604248 Msa0259560:intron 10.0%
!! GAAAAATTGATATATTTATA+AGG + chr2_2:56604394-56604413 Msa0259560:intron 10.0%
!!! AATATTTTTAACAATGAATT+TGG - chr2_2:56604616-56604635 None:intergenic 10.0%
!! AACAAGATAAATAAATATAT+TGG + chr2_2:56605715-56605734 Msa0259560:intron 10.0%
!!! ATCTCTTGTTTTTTTATTTA+CGG - chr2_2:56603862-56603881 None:intergenic 15.0%
!!! AGTATTTTTTATTCAATTCT+TGG + chr2_2:56603903-56603922 Msa0259560:intron 15.0%
!!! TTTAAGGTTAAATATGTTTT+TGG + chr2_2:56603935-56603954 Msa0259560:intron 15.0%
!!! TGAATATGGAAAATTTTTTA+GGG - chr2_2:56604022-56604041 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr2_2:56604334-56604353 Msa0259560:intron 15.0%
!! TATTATTATATGCTATAGTT+TGG - chr2_2:56604953-56604972 None:intergenic 15.0%
!!! TTTATTTTTAATCACACAAA+TGG + chr2_2:56605208-56605227 Msa0259560:intron 15.0%
!!! TTATTTTTAATCACACAAAT+GGG + chr2_2:56605209-56605228 Msa0259560:intron 15.0%
!! AGATAAATAAATATATTGGT+TGG + chr2_2:56605719-56605738 Msa0259560:intron 15.0%
!! AAAAGATTCTAAATACTTAT+GGG - chr2_2:56606211-56606230 None:intergenic 15.0%
!! AAAAAGATTCTAAATACTTA+TGG - chr2_2:56606212-56606231 None:intergenic 15.0%
!!! ATAAGTATTTAGAATCTTTT+TGG + chr2_2:56606211-56606230 Msa0259560:intron 15.0%
!!! TGATTATTTTTTATTCAACA+AGG + chr2_2:56607644-56607663 Msa0259560:intron 15.0%
!! GAAAAAAGAAAAAGAAAAAT+TGG - chr2_2:56608729-56608748 None:intergenic 15.0%
!!! ATTCAGATTTATTTTAAAAG+AGG + chr2_2:56608766-56608785 Msa0259560:three_prime_UTR 15.0%
!! TTTATGTTATGTGTATGAAT+AGG + chr2_2:56603799-56603818 Msa0259560:intron 20.0%
!!! TTCTTGGCATTTTTTTTTTA+AGG + chr2_2:56603919-56603938 Msa0259560:intron 20.0%
!! GAAAAGTTGACATATTTATA+TGG - chr2_2:56603962-56603981 None:intergenic 20.0%
!!! GTGAATATGGAAAATTTTTT+AGG - chr2_2:56604023-56604042 None:intergenic 20.0%
!!! AAATTTTCCATATTCACTTT+TGG + chr2_2:56604026-56604045 Msa0259560:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr2_2:56604054-56604073 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr2_2:56604330-56604349 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr2_2:56604333-56604352 Msa0259560:intron 20.0%
!!! AAGTTGAAGAAAAATTTTAG+AGG + chr2_2:56604362-56604381 Msa0259560:intron 20.0%
!!! AGTTGAAGAAAAATTTTAGA+GGG + chr2_2:56604363-56604382 Msa0259560:intron 20.0%
!! ATTTACAAATCAAATCAAAG+TGG - chr2_2:56604991-56605010 None:intergenic 20.0%
!!! ACTTTGATTTGATTTGTAAA+TGG + chr2_2:56604990-56605009 Msa0259560:exon 20.0%
!!! ATTTTTTTTAGCTCTAAAGT+CGG - chr2_2:56605321-56605340 None:intergenic 20.0%
!!! TTCAGCATTTTAGTTATTAT+AGG + chr2_2:56605349-56605368 Msa0259560:intron 20.0%
!!! TTTACAGATTTTTGATTCAA+GGG + chr2_2:56605524-56605543 Msa0259560:intron 20.0%
!!! GATTATTATTTTTCTGAACA+CGG + chr2_2:56606505-56606524 Msa0259560:intron 20.0%
!! AATAAGTTCATTACTTCAAA+AGG - chr2_2:56606969-56606988 None:intergenic 20.0%
!! TCATATCTTGTGAAAATATA+AGG - chr2_2:56607599-56607618 None:intergenic 20.0%
!! AATAATGCATTTGATTCAAA+TGG + chr2_2:56607910-56607929 Msa0259560:CDS 20.0%
!! ACATGTATGTTTAAGAAATT+GGG - chr2_2:56608590-56608609 None:intergenic 20.0%
!! TACATGTATGTTTAAGAAAT+TGG - chr2_2:56608591-56608610 None:intergenic 20.0%
!! TTAAACATACATGTAGAAAT+GGG + chr2_2:56608596-56608615 Msa0259560:three_prime_UTR 20.0%
!! AATATGAATTGAAGACAAAA+AGG - chr2_2:56608681-56608700 None:intergenic 20.0%
!!! TTTTCTTTTTCTTTTTTCTG+AGG + chr2_2:56608731-56608750 Msa0259560:three_prime_UTR 20.0%
!! TAAAACAAATGTCTACAATT+AGG - chr2_2:56608899-56608918 None:intergenic 20.0%
!!! ATTTGAGTTTGTGTTCTTTT+GGG - chr2_2:56603505-56603524 None:intergenic 25.0%
! AAAAAACAAGAGATTGTTGT+TGG + chr2_2:56603868-56603887 Msa0259560:intron 25.0%
! GAAATGAAATGAATGATCTT+AGG - chr2_2:56604847-56604866 None:intergenic 25.0%
!!! AATTTCAAAGTTTTTTGCTC+TGG + chr2_2:56605090-56605109 Msa0259560:CDS 25.0%
! AGTTATTATAGGTTAGAATC+AGG + chr2_2:56605360-56605379 Msa0259560:intron 25.0%
! GTTATTATAGGTTAGAATCA+GGG + chr2_2:56605361-56605380 Msa0259560:intron 25.0%
! ATGAACAAATGTGAACATTT+AGG - chr2_2:56605419-56605438 None:intergenic 25.0%
! TCACATTTGTTCATGTTATT+TGG + chr2_2:56605425-56605444 Msa0259560:intron 25.0%
!! CACATTTGTTCATGTTATTT+GGG + chr2_2:56605426-56605445 Msa0259560:intron 25.0%
!!! CTTTACAGATTTTTGATTCA+AGG + chr2_2:56605523-56605542 Msa0259560:intron 25.0%
! AATACTTATGGGATTATCTT+GGG - chr2_2:56606200-56606219 None:intergenic 25.0%
! AAATACTTATGGGATTATCT+TGG - chr2_2:56606201-56606220 None:intergenic 25.0%
! AATATAAGGTCAATATCATC+AGG - chr2_2:56606365-56606384 None:intergenic 25.0%
! TACTCAATTAATCACTTAGA+GGG - chr2_2:56606920-56606939 None:intergenic 25.0%
! TAATGAACTTATTCCTTTGT+TGG + chr2_2:56606976-56606995 Msa0259560:intron 25.0%
! TTTCAAAATGTCCTAGTTAT+TGG + chr2_2:56607246-56607265 Msa0259560:CDS 25.0%
!! AACTGATATTTGTTACACAT+TGG - chr2_2:56607386-56607405 None:intergenic 25.0%
! ACAAATTAATAGTTGCACAT+TGG - chr2_2:56607426-56607445 None:intergenic 25.0%
!!! ATGTGCAACTATTAATTTGT+TGG + chr2_2:56607426-56607445 Msa0259560:intron 25.0%
!! CGTCTTAAATTTTACAAAAG+AGG - chr2_2:56607497-56607516 None:intergenic 25.0%
!! AAAAGTTTGTTCAAAGGATT+AGG - chr2_2:56607535-56607554 None:intergenic 25.0%
! AAAATACTATACAAGTTCTG+AGG + chr2_2:56607566-56607585 Msa0259560:intron 25.0%
! GAGATATAAATTGATGTCAT+TGG + chr2_2:56607686-56607705 Msa0259560:intron 25.0%
!! AAATGTCATTTGAGTTAACT+TGG + chr2_2:56608236-56608255 Msa0259560:intron 25.0%
!! AATGTCATTTGAGTTAACTT+GGG + chr2_2:56608237-56608256 Msa0259560:intron 25.0%
! ATATCGAATTTGTCTGATTA+TGG + chr2_2:56608351-56608370 Msa0259560:CDS 25.0%
! CTTAAACATACATGTAGAAA+TGG + chr2_2:56608595-56608614 Msa0259560:three_prime_UTR 25.0%
! TAAACATACATGTAGAAATG+GGG + chr2_2:56608597-56608616 Msa0259560:three_prime_UTR 25.0%
! AAGATATTGAAATTCCTATG+CGG - chr2_2:56608938-56608957 None:intergenic 25.0%
!! GATTTGAGTTTGTGTTCTTT+TGG - chr2_2:56603506-56603525 None:intergenic 30.0%
!! ACACTCAAGTGATTTTGAAA+CGG - chr2_2:56603622-56603641 None:intergenic 30.0%
! TGTCAAATCGCAACTATTTT+TGG + chr2_2:56603686-56603705 Msa0259560:five_prime_UTR 30.0%
!!! AACTATTTTTGGAATCAACG+AGG + chr2_2:56603697-56603716 Msa0259560:five_prime_UTR 30.0%
AAAAAGAACCACAATTGCAA+AGG + chr2_2:56604496-56604515 Msa0259560:intron 30.0%
AAAAGAACCACAATTGCAAA+GGG + chr2_2:56604497-56604516 Msa0259560:intron 30.0%
CAAATATGTATGATGCATTG+AGG - chr2_2:56604639-56604658 None:intergenic 30.0%
TTTATTTGAATCTGAACCGT+TGG + chr2_2:56604660-56604679 Msa0259560:intron 30.0%
GTGGCAAAATAATTAACCAA+CGG - chr2_2:56604679-56604698 None:intergenic 30.0%
!! GTTTTACTTTTCTCTGAGTT+CGG - chr2_2:56604763-56604782 None:intergenic 30.0%
GACAAGAAAAACAACAACAT+TGG + chr2_2:56604790-56604809 Msa0259560:five_prime_UTR 30.0%
ATAGCATATGAGAATGAAGA+AGG - chr2_2:56604926-56604945 None:intergenic 30.0%
CAAATCAAATCAAAGTGGTA+TGG - chr2_2:56604986-56605005 None:intergenic 30.0%
!!! GAAATTTTGAAATCGATGAG+TGG - chr2_2:56605076-56605095 None:intergenic 30.0%
! TTTTAATCACACAAATGGGT+TGG + chr2_2:56605213-56605232 Msa0259560:intron 30.0%
! TTTAATCACACAAATGGGTT+GGG + chr2_2:56605214-56605233 Msa0259560:intron 30.0%
GATGATTCTTAAGCTAAACA+TGG + chr2_2:56605393-56605412 Msa0259560:intron 30.0%
! TTGTTCATGTTATTTGGGTT+CGG + chr2_2:56605431-56605450 Msa0259560:intron 30.0%
GTCATAATAAGAAGAATGCT+AGG + chr2_2:56605454-56605473 Msa0259560:intron 30.0%
TTGTTGATACTAGTGATGAA+TGG + chr2_2:56605614-56605633 Msa0259560:CDS 30.0%
! TGCTTAGTTTCTGATTTTTG+AGG + chr2_2:56605748-56605767 Msa0259560:intron 30.0%
!! TTTGTCAGAGTATTCTGTTT+TGG + chr2_2:56605798-56605817 Msa0259560:intron 30.0%
! TCACCTACAGGATTTTTATT+GGG + chr2_2:56605947-56605966 Msa0259560:intron 30.0%
TGAAACAGCAAACCTTATTA+AGG - chr2_2:56606049-56606068 None:intergenic 30.0%
!! CAAGATGTAGTTCTAAGATT+AGG + chr2_2:56606098-56606117 Msa0259560:intron 30.0%
TAAGATGAAGCTTCCATTTA+TGG + chr2_2:56606142-56606161 Msa0259560:intron 30.0%
GGATTATCTTGGGAAAAAAA+GGG - chr2_2:56606190-56606209 None:intergenic 30.0%
TCGATGTGCACATTAATATA+AGG - chr2_2:56606379-56606398 None:intergenic 30.0%
GTTCATAATGTGTCATATTG+AGG + chr2_2:56606437-56606456 Msa0259560:intron 30.0%
!!! TTTTTGTGTTTGTTTTGTGC+AGG - chr2_2:56606738-56606757 None:intergenic 30.0%
!!! TTTTGTGTTTGGTTTTGAGT+GGG - chr2_2:56606818-56606837 None:intergenic 30.0%
!!! TTTTTGTGTTTGGTTTTGAG+TGG - chr2_2:56606819-56606838 None:intergenic 30.0%
!!! CGATTGTTTTAATAGATGAG+TGG - chr2_2:56606855-56606874 None:intergenic 30.0%
ATCTATTAAAACAATCGCAG+AGG + chr2_2:56606858-56606877 Msa0259560:intron 30.0%
GTACTCAATTAATCACTTAG+AGG - chr2_2:56606921-56606940 None:intergenic 30.0%
ATGAATTTCACCACATTTAG+CGG - chr2_2:56607194-56607213 None:intergenic 30.0%
TTCATTTCTGTTAAACTGTC+TGG + chr2_2:56607209-56607228 Msa0259560:intron 30.0%
! CAGTTGAAAAGTTTGTTCAA+AGG - chr2_2:56607541-56607560 None:intergenic 30.0%
ATTGAGGAAGATGGTTTATT+TGG + chr2_2:56607737-56607756 Msa0259560:CDS 30.0%
TGCTTAATTACATAGCTAAG+AGG - chr2_2:56607838-56607857 None:intergenic 30.0%
TTGATTCAAATGGTTCTTTG+CGG + chr2_2:56607920-56607939 Msa0259560:CDS 30.0%
TATTCGTGCATTCAAATGAA+TGG + chr2_2:56607967-56607986 Msa0259560:CDS 30.0%
!! TTCCTGTATCTAGTATTGAT+TGG + chr2_2:56608061-56608080 Msa0259560:CDS 30.0%
AACCAATCAATACTAGATAC+AGG - chr2_2:56608066-56608085 None:intergenic 30.0%
!! TTGTGTATCACTTTTCTGAT+TGG + chr2_2:56608176-56608195 Msa0259560:intron 30.0%
GCATACATGATAATAAATGC+AGG + chr2_2:56608269-56608288 Msa0259560:intron 30.0%
TCTTCAATTCATATTGTCCT+TGG + chr2_2:56608686-56608705 Msa0259560:three_prime_UTR 30.0%
TTGTAAAAAACAATGCAGCA+TGG + chr2_2:56608811-56608830 Msa0259560:three_prime_UTR 30.0%
AATGTCTACAATTAGGTAGT+TGG - chr2_2:56608892-56608911 None:intergenic 30.0%
!!! CACTCAAGTGATTTTGAAAC+GGG - chr2_2:56603621-56603640 None:intergenic 35.0%
! ATTGTTGTTGGTTGAGATGA+AGG + chr2_2:56603880-56603899 Msa0259560:intron 35.0%
!! TTTTAGGGACTAAAAGTCGA+AGG - chr2_2:56604007-56604026 None:intergenic 35.0%
AGAGGAACCAAAAGTGAATA+TGG - chr2_2:56604036-56604055 None:intergenic 35.0%
TAAAGGATTTGACATGCTAC+AGG - chr2_2:56604437-56604456 None:intergenic 35.0%
CTTGTGTGACACTTCATTAA+AGG - chr2_2:56604454-56604473 None:intergenic 35.0%
AAAGAACCACAATTGCAAAG+GGG + chr2_2:56604498-56604517 Msa0259560:intron 35.0%
GGAAAACTGGAGTAGTATAT+TGG + chr2_2:56604725-56604744 Msa0259560:five_prime_UTR 35.0%
TTCCTCAACCAAAATCGTTT+CGG + chr2_2:56604816-56604835 Msa0259560:five_prime_UTR 35.0%
TATGAGAATGAAGAAGGAGA+AGG - chr2_2:56604920-56604939 None:intergenic 35.0%
TTGTAAATGGCAAATGCATC+TGG + chr2_2:56605003-56605022 Msa0259560:exon 35.0%
TGTAAATGGCAAATGCATCT+GGG + chr2_2:56605004-56605023 Msa0259560:exon 35.0%
!!! TGGGTTTTGGAGATTTTGAA+GGG - chr2_2:56605145-56605164 None:intergenic 35.0%
GTAAGAGTAAAAACTGACCT+GGG - chr2_2:56605164-56605183 None:intergenic 35.0%
! CAGGTCAGTTTTTACTCTTA+CGG + chr2_2:56605163-56605182 Msa0259560:intron 35.0%
AAGACAGACAATTCCATTAG+CGG - chr2_2:56605287-56605306 None:intergenic 35.0%
CTAATGGAATTGTCTGTCTT+TGG + chr2_2:56605287-56605306 Msa0259560:intron 35.0%
! TGTTCATGTTATTTGGGTTC+GGG + chr2_2:56605432-56605451 Msa0259560:intron 35.0%
TCATTAGTAATCTGAAGAGC+TGG - chr2_2:56605580-56605599 None:intergenic 35.0%
AGCTAAAACCAAAGACTAAC+CGG - chr2_2:56605680-56605699 None:intergenic 35.0%
!! CTTTGGTGTTTGTTGTGTAT+CGG + chr2_2:56605822-56605841 Msa0259560:intron 35.0%
! GTCACCTACAGGATTTTTAT+TGG + chr2_2:56605946-56605965 Msa0259560:intron 35.0%
! CACCTACAGGATTTTTATTG+GGG + chr2_2:56605948-56605967 Msa0259560:intron 35.0%
CGGCAAAAATAAATACAACC+GGG - chr2_2:56605994-56606013 None:intergenic 35.0%
CCGGCAAAAATAAATACAAC+CGG - chr2_2:56605995-56606014 None:intergenic 35.0%
!!! CCGGTTGTATTTATTTTTGC+CGG + chr2_2:56605992-56606011 Msa0259560:intron 35.0%
GGGATTATCTTGGGAAAAAA+AGG - chr2_2:56606191-56606210 None:intergenic 35.0%
!!! TGTTTGTGGCTTTTTAGCTA+TGG - chr2_2:56606645-56606664 None:intergenic 35.0%
ATAGCTAAAAAGCCACAAAC+AGG + chr2_2:56606644-56606663 Msa0259560:intron 35.0%
!!! TTTGTGTTTGGTTTTGAGTG+GGG - chr2_2:56606817-56606836 None:intergenic 35.0%
! TTTTAATAGATGAGTGGCGT+GGG - chr2_2:56606849-56606868 None:intergenic 35.0%
! TTCAACACTGATTAATCCGT+TGG + chr2_2:56606882-56606901 Msa0259560:intron 35.0%
! TCTCTGAAAGATACCAACAA+AGG - chr2_2:56606992-56607011 None:intergenic 35.0%
TGTTGGTATCTTTCAGAGAT+TGG + chr2_2:56606993-56607012 Msa0259560:intron 35.0%
GTTGGTATCTTTCAGAGATT+GGG + chr2_2:56606994-56607013 Msa0259560:intron 35.0%
TTGCAGATTCAACAACAACT+TGG + chr2_2:56607048-56607067 Msa0259560:intron 35.0%
!! TCCATGGTGTTATGATCTTA+CGG + chr2_2:56607083-56607102 Msa0259560:CDS 35.0%
TGAATTTCACCACATTTAGC+GGG - chr2_2:56607193-56607212 None:intergenic 35.0%
AGCATCACCAAAAAGAATAC+AGG - chr2_2:56607316-56607335 None:intergenic 35.0%
CAACAAGGAGAAGTTCTTTA+TGG + chr2_2:56607659-56607678 Msa0259560:intron 35.0%
TGCGTCTCATATTATTGAGA+AGG + chr2_2:56607798-56607817 Msa0259560:intron 35.0%
GCGTCTCATATTATTGAGAA+GGG + chr2_2:56607799-56607818 Msa0259560:intron 35.0%
ATTACATAGCTAAGAGGAAG+AGG - chr2_2:56607832-56607851 None:intergenic 35.0%
TGATTCAAATGGTTCTTTGC+GGG + chr2_2:56607921-56607940 Msa0259560:CDS 35.0%
! TGATTGGTTACTTCTACATC+AGG + chr2_2:56608077-56608096 Msa0259560:CDS 35.0%
!! GTATCACTTTTCTGATTGGT+AGG + chr2_2:56608180-56608199 Msa0259560:intron 35.0%
!! GAGTTAACTTGGGAATTTTG+TGG + chr2_2:56608247-56608266 Msa0259560:intron 35.0%
AATAAATGCAGGCAAACCAA+AGG + chr2_2:56608280-56608299 Msa0259560:intron 35.0%
! TTCGATATCACCTTTTCTGA+GGG - chr2_2:56608339-56608358 None:intergenic 35.0%
! ATTCGATATCACCTTTTCTG+AGG - chr2_2:56608340-56608359 None:intergenic 35.0%
! TTCATCTAAAGCTAAGGGAA+TGG - chr2_2:56608394-56608413 None:intergenic 35.0%
! ACTGCTTCATCTAAAGCTAA+GGG - chr2_2:56608399-56608418 None:intergenic 35.0%
! AACTGCTTCATCTAAAGCTA+AGG - chr2_2:56608400-56608419 None:intergenic 35.0%
TTAGATGAAGCAGTTAGAAG+TGG + chr2_2:56608405-56608424 Msa0259560:CDS 35.0%
ATACATGTAGAAATGGGGTT+TGG + chr2_2:56608602-56608621 Msa0259560:three_prime_UTR 35.0%
GACAAAAAGGTAATGAGTTG+TGG - chr2_2:56608668-56608687 None:intergenic 35.0%
TACTTGACAAAACAAGACCA+AGG - chr2_2:56608706-56608725 None:intergenic 35.0%
TCTACAATTAGGTAGTTGGT+TGG - chr2_2:56608888-56608907 None:intergenic 35.0%
ATCTATTAAATGCACCGCAT+AGG + chr2_2:56608921-56608940 Msa0259560:three_prime_UTR 35.0%
TCTATCTCTCTCTCTCTATG+CGG + chr2_2:56603524-56603543 Msa0259560:five_prime_UTR 40.0%
! GAAAGTTGCCAATGATGGAA+TGG - chr2_2:56603568-56603587 None:intergenic 40.0%
AGTTGGAAAGTTGCCAATGA+TGG - chr2_2:56603573-56603592 None:intergenic 40.0%
! ATTTCCCTTTTCTTTCCAGC+TGG + chr2_2:56603661-56603680 Msa0259560:intron 40.0%
AAGAACCACAATTGCAAAGG+GGG + chr2_2:56604499-56604518 Msa0259560:intron 40.0%
CAAAGGGGGCTAATTCATAA+GGG + chr2_2:56604513-56604532 Msa0259560:intron 40.0%
GAAGGAGAAATACAACAGAG+AGG - chr2_2:56604902-56604921 None:intergenic 40.0%
!! GGAAAGCTTACTCTGAAGTT+AGG - chr2_2:56605042-56605061 None:intergenic 40.0%
!!! TTTTGCTCTGGAACTATCGA+AGG + chr2_2:56605102-56605121 Msa0259560:CDS 40.0%
!!! GGTTTTGGAGATTTTGAAGG+GGG - chr2_2:56605143-56605162 None:intergenic 40.0%
!!! GGGTTTTGGAGATTTTGAAG+GGG - chr2_2:56605144-56605163 None:intergenic 40.0%
!!! CTGGGTTTTGGAGATTTTGA+AGG - chr2_2:56605146-56605165 None:intergenic 40.0%
CTTCAAAATCTCCAAAACCC+AGG + chr2_2:56605144-56605163 Msa0259560:CDS 40.0%
! GTAAAAACTGACCTGGGTTT+TGG - chr2_2:56605158-56605177 None:intergenic 40.0%
CGTAAGAGTAAAAACTGACC+TGG - chr2_2:56605165-56605184 None:intergenic 40.0%
GAAGCCATGACAGAAATTGT+TGG - chr2_2:56605256-56605275 None:intergenic 40.0%
AGACAGACAATTCCATTAGC+GGG - chr2_2:56605286-56605305 None:intergenic 40.0%
! TTTGATTCAAGGGTGCAAGT+TGG + chr2_2:56605534-56605553 Msa0259560:intron 40.0%
!! TGTTCTTTCCGGTTAGTCTT+TGG + chr2_2:56605669-56605688 Msa0259560:intron 40.0%
!!! GAGTATTCTGTTTTGGCCTT+TGG + chr2_2:56605805-56605824 Msa0259560:intron 40.0%
CGATACACAACAAACACCAA+AGG - chr2_2:56605824-56605843 None:intergenic 40.0%
! ATCCTTTTGGATTACGGTGA+TGG + chr2_2:56605856-56605875 Msa0259560:intron 40.0%
AACCATCACCGTAATCCAAA+AGG - chr2_2:56605861-56605880 None:intergenic 40.0%
! TTTGGATTACGGTGATGGTT+AGG + chr2_2:56605861-56605880 Msa0259560:intron 40.0%
ACCAATCTGAACTGCTCAAA+AGG - chr2_2:56605900-56605919 None:intergenic 40.0%
AATCCTGTAGGTGACAAAAG+CGG - chr2_2:56605941-56605960 None:intergenic 40.0%
CTCCCCAATAAAAATCCTGT+AGG - chr2_2:56605953-56605972 None:intergenic 40.0%
! AAGAAGCACAACAAACTAGC+CGG - chr2_2:56606014-56606033 None:intergenic 40.0%
!! AGTTTGTTGTGCTTCTTGCA+TGG + chr2_2:56606017-56606036 Msa0259560:intron 40.0%
! GCATGGACTATGCCTTAATA+AGG + chr2_2:56606034-56606053 Msa0259560:intron 40.0%
! CTTCCATTTATGGAGAGCAT+TGG + chr2_2:56606152-56606171 Msa0259560:intron 40.0%
CTACCAATGCTCTCCATAAA+TGG - chr2_2:56606158-56606177 None:intergenic 40.0%
CGACAAATAGCAAGCAAAGA+AGG - chr2_2:56606259-56606278 None:intergenic 40.0%
!! CTTTGCTTGCTATTTGTCGT+TGG + chr2_2:56606260-56606279 Msa0259560:intron 40.0%
ATTAATGTGCACATCGACAC+CGG + chr2_2:56606382-56606401 Msa0259560:CDS 40.0%
ACATTATGAACCCATACCTG+TGG - chr2_2:56606428-56606447 None:intergenic 40.0%
GCAAAACTGATACAGCAGAA+CGG + chr2_2:56606575-56606594 Msa0259560:intron 40.0%
GTTTCTGTGTTCTGTTCTGT+TGG - chr2_2:56606765-56606784 None:intergenic 40.0%
TTTAATAGATGAGTGGCGTG+GGG - chr2_2:56606848-56606867 None:intergenic 40.0%
!! GTTTTAATAGATGAGTGGCG+TGG - chr2_2:56606850-56606869 None:intergenic 40.0%
! AGGGTGTTAAAGCAAACCAA+CGG - chr2_2:56606901-56606920 None:intergenic 40.0%
!! TGCTTGTAGTGGATTTGTGT+CGG + chr2_2:56607107-56607126 Msa0259560:CDS 40.0%
! GTCACATTAGGGGTATGAAT+TGG + chr2_2:56607148-56607167 Msa0259560:intron 40.0%
TGTTAAACTGTCTGGATGCA+GGG + chr2_2:56607217-56607236 Msa0259560:intron 40.0%
! TATGTTGATTGGACAGACAG+AGG + chr2_2:56607288-56607307 Msa0259560:CDS 40.0%
! ATGTTGATTGGACAGACAGA+GGG + chr2_2:56607289-56607308 Msa0259560:CDS 40.0%
! AGAGGGACCTGTATTCTTTT+TGG + chr2_2:56607306-56607325 Msa0259560:CDS 40.0%
!!! ATTCTTTTTGGTGATGCTGC+TGG + chr2_2:56607318-56607337 Msa0259560:CDS 40.0%
TGGTATTATCATTGCACTGC+AGG + chr2_2:56607706-56607725 Msa0259560:intron 40.0%
!! GGTTTTGATGTGCATAGTGA+TGG + chr2_2:56607758-56607777 Msa0259560:CDS 40.0%
!! ATAGTGATGGTAGTGGTGTA+AGG + chr2_2:56607771-56607790 Msa0259560:CDS 40.0%
GATTCAAATGGTTCTTTGCG+GGG + chr2_2:56607922-56607941 Msa0259560:CDS 40.0%
CATTTGAATGCACGAATACG+AGG - chr2_2:56607965-56607984 None:intergenic 40.0%
CAGCTGCATCAATAATCCTT+TGG - chr2_2:56608299-56608318 None:intergenic 40.0%
! TCGATATCACCTTTTCTGAG+GGG - chr2_2:56608338-56608357 None:intergenic 40.0%
CTGAGTCGCATATTTCACAT+CGG + chr2_2:56608509-56608528 Msa0259560:exon 40.0%
GTTTGCACTAGGATAATAGC+CGG + chr2_2:56608628-56608647 Msa0259560:three_prime_UTR 40.0%
! TGCCAATGATGGAATGGAAG+CGG - chr2_2:56603562-56603581 None:intergenic 45.0%
CAAGCCAGCTGGAAAGAAAA+GGG - chr2_2:56603668-56603687 None:intergenic 45.0%
ACAAGCCAGCTGGAAAGAAA+AGG - chr2_2:56603669-56603688 None:intergenic 45.0%
ATTAGCCCCCTTTGCAATTG+TGG - chr2_2:56604507-56604526 None:intergenic 45.0%
GCAAAGGGGGCTAATTCATA+AGG + chr2_2:56604512-56604531 Msa0259560:intron 45.0%
TTTCACAGATGACTGACACG+TGG - chr2_2:56604698-56604717 None:intergenic 45.0%
ACGTGTCAGTCATCTGTGAA+AGG + chr2_2:56604697-56604716 Msa0259560:intron 45.0%
CGTGTCAGTCATCTGTGAAA+GGG + chr2_2:56604698-56604717 Msa0259560:intron 45.0%
AGTCATCTGTGAAAGGGAAG+TGG + chr2_2:56604704-56604723 Msa0259560:intron 45.0%
GTGAAAGGGAAGTGGAAAAC+TGG + chr2_2:56604712-56604731 Msa0259560:five_prime_UTR 45.0%
!!! CTCCGAAACGATTTTGGTTG+AGG - chr2_2:56604821-56604840 None:intergenic 45.0%
! AGGTTGCTCCGAAACGATTT+TGG - chr2_2:56604827-56604846 None:intergenic 45.0%
GGTGCCAACAATTTCTGTCA+TGG + chr2_2:56605249-56605268 Msa0259560:intron 45.0%
GACAGACAATTCCATTAGCG+GGG - chr2_2:56605285-56605304 None:intergenic 45.0%
!! ATTCAAGGGTGCAAGTTGGT+TGG + chr2_2:56605538-56605557 Msa0259560:intron 45.0%
GAATGGATATATGCTCGCAC+CGG + chr2_2:56605631-56605650 Msa0259560:CDS 45.0%
AATGGATATATGCTCGCACC+GGG + chr2_2:56605632-56605651 Msa0259560:CDS 45.0%
!! TGTTTGTTGTGTATCGGTCC+TGG + chr2_2:56605828-56605847 Msa0259560:intron 45.0%
!! GTTTGTTGTGTATCGGTCCT+GGG + chr2_2:56605829-56605848 Msa0259560:intron 45.0%
! GGCAGCATCCTTTTGGATTA+CGG + chr2_2:56605850-56605869 Msa0259560:intron 45.0%
! GCCTTTTGAGCAGTTCAGAT+TGG + chr2_2:56605896-56605915 Msa0259560:intron 45.0%
TTTGTCGTTGGTGTGCTTAC+AGG + chr2_2:56606272-56606291 Msa0259560:intron 45.0%
AGAGAGCTTGACAACCATAG+CGG + chr2_2:56606298-56606317 Msa0259560:CDS 45.0%
AGCTAAGAAAGCTCTCGAGA+TGG + chr2_2:56606328-56606347 Msa0259560:CDS 45.0%
! TCGACACCGGATGATCTTTT+TGG + chr2_2:56606395-56606414 Msa0259560:CDS 45.0%
GCGCTACCAAAAAGATCATC+CGG - chr2_2:56606404-56606423 None:intergenic 45.0%
TTTGCTTCTCTGCTCGTCTT+GGG - chr2_2:56606560-56606579 None:intergenic 45.0%
! TTTTGCTTCTCTGCTCGTCT+TGG - chr2_2:56606561-56606580 None:intergenic 45.0%
CTGTAAAGACGAGCCGTTAA+AGG + chr2_2:56606602-56606621 Msa0259560:intron 45.0%
!! CTATGGTTTTGCTGCTGTTC+TGG - chr2_2:56606628-56606647 None:intergenic 45.0%
!!! GTGTTTGTTTTGTGCAGGCT+GGG - chr2_2:56606733-56606752 None:intergenic 45.0%
!!! TGTGTTTGTTTTGTGCAGGC+TGG - chr2_2:56606734-56606753 None:intergenic 45.0%
TTGGCTGCACAAAGAATCCA+TGG + chr2_2:56607067-56607086 Msa0259560:CDS 45.0%
GCCGTAAGATCATAACACCA+TGG - chr2_2:56607087-56607106 None:intergenic 45.0%
!! GCTTGTAGTGGATTTGTGTC+GGG + chr2_2:56607108-56607127 Msa0259560:CDS 45.0%
TGTGTCGGGTTTACTATCAG+CGG + chr2_2:56607122-56607141 Msa0259560:CDS 45.0%
TATCAGCGGCATGTCACATT+AGG + chr2_2:56607136-56607155 Msa0259560:CDS 45.0%
ATCAGCGGCATGTCACATTA+GGG + chr2_2:56607137-56607156 Msa0259560:CDS 45.0%
TTCTCAATGCCCGCTAAATG+TGG + chr2_2:56607181-56607200 Msa0259560:intron 45.0%
CTGTTAAACTGTCTGGATGC+AGG + chr2_2:56607216-56607235 Msa0259560:intron 45.0%
GTTAAACTGTCTGGATGCAG+GGG + chr2_2:56607218-56607237 Msa0259560:intron 45.0%
TTAAACTGTCTGGATGCAGG+GGG + chr2_2:56607219-56607238 Msa0259560:intron 45.0%
CGCTTTCACGGTATGTTGAT+TGG + chr2_2:56607277-56607296 Msa0259560:CDS 45.0%
GCTTGCGATATTGAGGAAGA+TGG + chr2_2:56607728-56607747 Msa0259560:CDS 45.0%
GATGTGCATAGTGATGGTAG+TGG + chr2_2:56607764-56607783 Msa0259560:CDS 45.0%
TCACGTAGGCATTTGAATGC+TGG + chr2_2:56607868-56607887 Msa0259560:intron 45.0%
CACGAATACGAGGACTTCTT+GGG - chr2_2:56607955-56607974 None:intergenic 45.0%
GATCGAATCTGCCCTTGAAA+AGG + chr2_2:56608032-56608051 Msa0259560:CDS 45.0%
! AGGAAGACCAGCCTTTTCAA+GGG - chr2_2:56608046-56608065 None:intergenic 45.0%
TTATTGATGCAGCTGCGACT+CGG + chr2_2:56608304-56608323 Msa0259560:CDS 45.0%
GCTAGAAATCCCCTCAGAAA+AGG + chr2_2:56608326-56608345 Msa0259560:CDS 45.0%
TGAAGCAGTTAGAAGTGGCA+TGG + chr2_2:56608410-56608429 Msa0259560:CDS 45.0%
!! CTTTGGTGCTGGTCTTACTT+GGG + chr2_2:56608464-56608483 Msa0259560:CDS 45.0%
!! TTTGGTGCTGGTCTTACTTG+GGG + chr2_2:56608465-56608484 Msa0259560:CDS 45.0%
!! GGGTTTGGTTAGTTTGCACT+AGG + chr2_2:56608617-56608636 Msa0259560:three_prime_UTR 45.0%
! GTAATGAGTTGTGGAAGTGC+TGG - chr2_2:56608659-56608678 None:intergenic 45.0%
AAACAATGCAGCATGGACAG+TGG + chr2_2:56608818-56608837 Msa0259560:three_prime_UTR 45.0%
!!! GTTAAAAAAAATTAATTTTT+TGG + chr2_2:56604226-56604245 Msa0259560:intron 5.0%
!!! TAAAAAAAATTAATTTTTTG+GGG + chr2_2:56604228-56604247 Msa0259560:intron 5.0%
!!! AATTTTCATTTTTTTTAATA+AGG + chr2_2:56604541-56604560 Msa0259560:intron 5.0%
GGAATGGAAGCGGGAACAAA+AGG - chr2_2:56603552-56603571 None:intergenic 50.0%
TCCCGCTTCCATTCCATCAT+TGG + chr2_2:56603557-56603576 Msa0259560:five_prime_UTR 50.0%
! GCCAATGATGGAATGGAAGC+GGG - chr2_2:56603561-56603580 None:intergenic 50.0%
TTGCGATTTGACAAGCCAGC+TGG - chr2_2:56603679-56603698 None:intergenic 50.0%
CGATGAGTGGTAGAGAGAGA+AGG - chr2_2:56605063-56605082 None:intergenic 50.0%
!! GAGATTTTGAAGGGGGAGAG+TGG - chr2_2:56605136-56605155 None:intergenic 50.0%
ATTGTTGGCACCTGAGACCT+CGG - chr2_2:56605241-56605260 None:intergenic 50.0%
GCTTCAATTAGCCCCGCTAA+TGG + chr2_2:56605271-56605290 Msa0259560:intron 50.0%
AATCCAAAAGGATGCTGCCC+AGG - chr2_2:56605849-56605868 None:intergenic 50.0%
AAGCGGCTGCTAGACACTAA+AGG - chr2_2:56605924-56605943 None:intergenic 50.0%
TGGGGAGTTCCGCCTATATA+CGG + chr2_2:56605966-56605985 Msa0259560:intron 50.0%
GAGAGCTTGACAACCATAGC+GGG + chr2_2:56606299-56606318 Msa0259560:CDS 50.0%
AGAGCTTGACAACCATAGCG+GGG + chr2_2:56606300-56606319 Msa0259560:CDS 50.0%
!!! TCTTTTTGGTAGCGCTCCAC+AGG + chr2_2:56606409-56606428 Msa0259560:CDS 50.0%
! GCTGCTGTTCTGGCCTTTAA+CGG - chr2_2:56606618-56606637 None:intergenic 50.0%
GTGTGTGTTGTGCCTGTTTG+TGG - chr2_2:56606659-56606678 None:intergenic 50.0%
!!! TGTTTGGTTTTGAGTGGGGC+TGG - chr2_2:56606813-56606832 None:intergenic 50.0%
! GGGGCTTGCGTTTTTGTGTT+TGG - chr2_2:56606829-56606848 None:intergenic 50.0%
GATCTTACGGCTGCTTGTAG+TGG + chr2_2:56607096-56607115 Msa0259560:CDS 50.0%
TCAGCGGCATGTCACATTAG+GGG + chr2_2:56607138-56607157 Msa0259560:CDS 50.0%
GCGCATCAGCTCCAATAACT+AGG - chr2_2:56607260-56607279 None:intergenic 50.0%
TTGGAGCTGATGCGCTTTCA+CGG + chr2_2:56607265-56607284 Msa0259560:CDS 50.0%
!! TGCTGGTGCTGTAGTAGTAC+AGG + chr2_2:56607335-56607354 Msa0259560:CDS 50.0%
ACTGCAGGCTTGCGATATTG+AGG + chr2_2:56607721-56607740 Msa0259560:intron 50.0%
AGCACTTGCTCTCTTCACGT+AGG + chr2_2:56607854-56607873 Msa0259560:intron 50.0%
GAATACGAGGACTTCTTGGG+AGG - chr2_2:56607952-56607971 None:intergenic 50.0%
GCACGAATACGAGGACTTCT+TGG - chr2_2:56607956-56607975 None:intergenic 50.0%
GAATCTGCCCTTGAAAAGGC+TGG + chr2_2:56608036-56608055 Msa0259560:CDS 50.0%
! CAGGAAGACCAGCCTTTTCA+AGG - chr2_2:56608047-56608066 None:intergenic 50.0%
AGAAGTGGCATGGTTAAGCC+AGG + chr2_2:56608420-56608439 Msa0259560:CDS 50.0%
! GCAGCTGCAATAGTTTGTCC+TGG - chr2_2:56608441-56608460 None:intergenic 50.0%
GGACAAACTATTGCAGCTGC+TGG + chr2_2:56608441-56608460 Msa0259560:CDS 50.0%
!! ACTATTGCAGCTGCTGGCTT+TGG + chr2_2:56608447-56608466 Msa0259560:CDS 50.0%
!! GCTTTGGTGCTGGTCTTACT+TGG + chr2_2:56608463-56608482 Msa0259560:CDS 50.0%
!! TGCTGGTCTTACTTGGGGTT+CGG + chr2_2:56608470-56608489 Msa0259560:CDS 50.0%
GGGTTCGGCAATTGTTCGTT+GGG + chr2_2:56608485-56608504 Msa0259560:CDS 50.0%
GGTTCGGCAATTGTTCGTTG+GGG + chr2_2:56608486-56608505 Msa0259560:CDS 50.0%
TAGCGAGCGAGTTCGAGAGT+TGG - chr2_2:56603590-56603609 None:intergenic 55.0%
TCTCGAACTCGCTCGCTACT+CGG + chr2_2:56603592-56603611 Msa0259560:five_prime_UTR 55.0%
!! ACACAAATGGGTTGGGACCG+AGG + chr2_2:56605221-56605240 Msa0259560:intron 55.0%
!! GGGTGCAAGTTGGTTGGATG+TGG + chr2_2:56605544-56605563 Msa0259560:intron 55.0%
!!! CAGCCGCTTTTGTCACCTAC+AGG + chr2_2:56605935-56605954 Msa0259560:intron 55.0%
! TACAACCGGGCGCCGTATAT+AGG - chr2_2:56605981-56606000 None:intergenic 55.0%
GAGCTTGACAACCATAGCGG+GGG + chr2_2:56606301-56606320 Msa0259560:CDS 55.0%
!! TTGGTAGCGCTCCACAGGTA+TGG + chr2_2:56606414-56606433 Msa0259560:intron 55.0%
! TGGTAGCGCTCCACAGGTAT+GGG + chr2_2:56606415-56606434 Msa0259560:intron 55.0%
AGGGCAGATTCGATCGTCTG+TGG - chr2_2:56608027-56608046 None:intergenic 55.0%
GGGGTTCGGCAATTGTTCGT+TGG + chr2_2:56608484-56608503 Msa0259560:CDS 55.0%
!! TGTGGAAGTGCTGGATGCTC+CGG - chr2_2:56608650-56608669 None:intergenic 55.0%
CTCGAACTCGCTCGCTACTC+GGG + chr2_2:56603593-56603612 Msa0259560:five_prime_UTR 60.0%
AACACGCCGCTTGCGAATCC+CGG - chr2_2:56605653-56605672 None:intergenic 60.0%
CGCAAGCGGCGTGTTCTTTC+CGG + chr2_2:56605658-56605677 Msa0259560:CDS 60.0%
! GGTCCTGGGCAGCATCCTTT+TGG + chr2_2:56605843-56605862 Msa0259560:intron 60.0%
TTCCGCCTATATACGGCGCC+CGG + chr2_2:56605973-56605992 Msa0259560:intron 60.0%
! AACCGGGCGCCGTATATAGG+CGG - chr2_2:56605978-56605997 None:intergenic 60.0%
! CTTGACAACCATAGCGGGGG+AGG + chr2_2:56606304-56606323 Msa0259560:CDS 60.0%
TGGGTTCGTGTGGACAGTGG+GGG - chr2_2:56606714-56606733 None:intergenic 60.0%
CTGGGTTCGTGTGGACAGTG+GGG - chr2_2:56606715-56606734 None:intergenic 60.0%
GCTGGGTTCGTGTGGACAGT+GGG - chr2_2:56606716-56606735 None:intergenic 60.0%
TTGTGCAGGCTGGGTTCGTG+TGG - chr2_2:56606724-56606743 None:intergenic 60.0%
ACATAGCCTAGCAGCCTGCC+AGG + chr2_2:56606783-56606802 Msa0259560:intron 60.0%
AACTGTCTGGATGCAGGGGG+TGG + chr2_2:56607222-56607241 Msa0259560:intron 60.0%
! TGGGTTGGGACCGAGGTCTC+AGG + chr2_2:56605228-56605247 Msa0259560:intron 65.0%
CTCGCACCGGGATTCGCAAG+CGG + chr2_2:56605644-56605663 Msa0259560:CDS 65.0%
CTTAGCTGCCTCCCCCGCTA+TGG - chr2_2:56606315-56606334 None:intergenic 65.0%
! CGTGTGGACAGTGGGGGTGT+GGG - chr2_2:56606708-56606727 None:intergenic 65.0%
TCGTGTGGACAGTGGGGGTG+TGG - chr2_2:56606709-56606728 None:intergenic 65.0%
GGCTGGGTTCGTGTGGACAG+TGG - chr2_2:56606717-56606736 None:intergenic 65.0%
!! TTGAGTGGGGCTGGTTCGCC+TGG - chr2_2:56606804-56606823 None:intergenic 65.0%
!! GCAGCTGCTGGCTTTGGTGC+TGG + chr2_2:56608453-56608472 Msa0259560:CDS 65.0%
GGTTCGCCTGGCAGGCTGCT+AGG - chr2_2:56606792-56606811 None:intergenic 70.0%
!! GTGGGGCTGGTTCGCCTGGC+AGG - chr2_2:56606800-56606819 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56603494 56608959 56603494 ID=Msa0259560;Name=Msa0259560
chr2_2 mRNA 56603494 56608959 56603494 ID=Msa0259560-mRNA-1;Parent=Msa0259560;Name=Msa0259560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=508|0.88|0.9|1|0.77|0.7|10|447|387
chr2_2 exon 56603494 56603647 56603494 ID=Msa0259560-mRNA-1:exon:17161;Parent=Msa0259560-mRNA-1
chr2_2 exon 56603668 56603718 56603668 ID=Msa0259560-mRNA-1:exon:17162;Parent=Msa0259560-mRNA-1
chr2_2 exon 56604706 56605165 56604706 ID=Msa0259560-mRNA-1:exon:17163;Parent=Msa0259560-mRNA-1
chr2_2 exon 56605545 56605679 56605545 ID=Msa0259560-mRNA-1:exon:17164;Parent=Msa0259560-mRNA-1
chr2_2 exon 56606294 56606430 56606294 ID=Msa0259560-mRNA-1:exon:17165;Parent=Msa0259560-mRNA-1
chr2_2 exon 56607054 56607159 56607054 ID=Msa0259560-mRNA-1:exon:17166;Parent=Msa0259560-mRNA-1
chr2_2 exon 56607238 56607356 56607238 ID=Msa0259560-mRNA-1:exon:17167;Parent=Msa0259560-mRNA-1
chr2_2 exon 56607728 56607792 56607728 ID=Msa0259560-mRNA-1:exon:17168;Parent=Msa0259560-mRNA-1
chr2_2 exon 56607876 56608098 56607876 ID=Msa0259560-mRNA-1:exon:17169;Parent=Msa0259560-mRNA-1
chr2_2 exon 56608291 56608959 56608291 ID=Msa0259560-mRNA-1:exon:17170;Parent=Msa0259560-mRNA-1
chr2_2 five_prime_UTR 56603494 56603647 56603494 ID=Msa0259560-mRNA-1:five_prime_utr;Parent=Msa0259560-mRNA-1
chr2_2 five_prime_UTR 56603668 56603718 56603668 ID=Msa0259560-mRNA-1:five_prime_utr;Parent=Msa0259560-mRNA-1
chr2_2 five_prime_UTR 56604706 56605008 56604706 ID=Msa0259560-mRNA-1:five_prime_utr;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56605009 56605165 56605009 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56605545 56605679 56605545 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56606294 56606430 56606294 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56607054 56607159 56607054 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56607238 56607356 56607238 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56607728 56607792 56607728 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56607876 56608098 56607876 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 CDS 56608291 56608512 56608291 ID=Msa0259560-mRNA-1:cds;Parent=Msa0259560-mRNA-1
chr2_2 three_prime_UTR 56608513 56608959 56608513 ID=Msa0259560-mRNA-1:three_prime_utr;Parent=Msa0259560-mRNA-1
Gene Sequence

>Msa0259560

ATGGCAAATGCATCTGGGTTATTCTCTACTCCTAACTTCAGAGTAAGCTTTCCTTCTCTCTCTACCACTCATCGATTTCAAAATTTCAAAGTTTTTTGCTCTGGAACTATCGAAGGTGCTGCTTCCACTCTCCCCCTTCAAAATCTCCAAAACCCAGGGTGCAAGTTGGTTGGATGTGGTTCTGCTTTGCCAGCTCTTCAGATTACTAATGAAGATCTTTCAAAAGTTGTTGATACTAGTGATGAATGGATATATGCTCGCACCGGGATTCGCAAGCGGCGTGTTCTTTCCGGTGAAGAGAGCTTGACAACCATAGCGGGGGAGGCAGCTAAGAAAGCTCTCGAGATGGCAAAAGTTCATCCTGATGATATTGACCTTATATTAATGTGCACATCGACACCGGATGATCTTTTTGGTAGCGCTCCACAGATTCAACAACAACTTGGCTGCACAAAGAATCCATGGTGTTATGATCTTACGGCTGCTTGTAGTGGATTTGTGTCGGGTTTACTATCAGCGGCATGTCACATTAGGGGGGGTGGATTTCAAAATGTCCTAGTTATTGGAGCTGATGCGCTTTCACGGTATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGTGATGCTGCTGGTGCTGTAGTAGTACAGGCTTGCGATATTGAGGAAGATGGTTTATTTGGTTTTGATGTGCATAGTGATGGTAGTGGTGTAAGGCATTTGAATGCTGGCATTAAAGTTGACGAGTCAAATAATGCATTTGATTCAAATGGTTCTTTGCGGGGTTTTCCTCCCAAGAAGTCCTCGTATTCGTGCATTCAAATGAATGGAAAAGAAGTCTTTCGCTTTGCTGTACGATGTGTGCCACAGACGATCGAATCTGCCCTTGAAAAGGCTGGTCTTCCTGTATCTAGTATTGATTGGTTACTTCTACATCAGGCAAACCAAAGGATTATTGATGCAGCTGCGACTCGGCTAGAAATCCCCTCAGAAAAGGTGATATCGAATTTGTCTGATTATGGTAACACAAGTGCAGCTTCCATTCCCTTAGCTTTAGATGAAGCAGTTAGAAGTGGCATGGTTAAGCCAGGACAAACTATTGCAGCTGCTGGCTTTGGTGCTGGTCTTACTTGGGGTTCGGCAATTGTTCGTTGGGGCTGA

Protein sequence

>Msa0259560

MANASGLFSTPNFRVSFPSLSTTHRFQNFKVFCSGTIEGAASTLPLQNLQNPGCKLVGCGSALPALQITNEDLSKVVDTSDEWIYARTGIRKRRVLSGEESLTTIAGEAAKKALEMAKVHPDDIDLILMCTSTPDDLFGSAPQIQQQLGCTKNPWCYDLTAACSGFVSGLLSAACHIRGGGFQNVLVIGADALSRYVDWTDRGTCILFGDAAGAVVVQACDIEEDGLFGFDVHSDGSGVRHLNAGIKVDESNNAFDSNGSLRGFPPKKSSYSCIQMNGKEVFRFAVRCVPQTIESALEKAGLPVSSIDWLLLHQANQRIIDAAATRLEIPSEKVISNLSDYGNTSAASIPLALDEAVRSGMVKPGQTIAAAGFGAGLTWGSAIVRWG*