AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930270 MtrunA17_Chr8g0392461 96.567 233 8 0 1 233 1 233 5.84e-169 464
Msa0930270 MtrunA17_Chr8g0392471 69.061 181 51 2 54 230 98 277 2.04e-80 242
Msa0930270 MtrunA17_Chr8g0392471 72.840 81 18 1 154 230 1 81 1.25e-34 125
Msa0930270 MtrunA17_Chr5g0428761 56.109 221 85 4 1 210 1 220 1.51e-79 239
Msa0930270 MtrunA17_Chr3g0139261 39.906 213 121 2 1 206 1 213 8.49e-45 149
Msa0930270 MtrunA17_Chr1g0188581 38.942 208 120 2 6 206 8 215 3.11e-43 145
Msa0930270 MtrunA17_Chr1g0147511 38.350 206 122 2 6 206 8 213 2.41e-42 143
Msa0930270 MtrunA17_Chr8g0392481 71.910 89 25 0 4 92 5 93 1.22e-41 137
Msa0930270 MtrunA17_Chr6g0477471 35.681 213 130 2 1 206 1 213 3.92e-37 130
Msa0930270 MtrunA17_Chr2g0282971 35.233 193 110 5 38 223 1 185 7.84e-31 112
Msa0930270 MtrunA17_Chr6g0477661 33.495 206 132 1 6 206 8 213 3.25e-29 109
Msa0930270 MtrunA17_Chr6g0477681 32.018 228 139 4 6 227 8 225 1.70e-25 99.8
Msa0930270 MtrunA17_Chr7g0244961 31.472 197 123 3 6 195 44 235 1.57e-21 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930270 AT3G18215.1 59.746 236 90 1 4 234 5 240 1.17e-100 293
Msa0930270 AT5G24600.1 56.054 223 83 3 1 208 1 223 1.67e-77 234
Msa0930270 AT5G24600.2 56.054 223 83 3 1 208 1 223 2.68e-77 233
Msa0930270 AT3G18215.2 59.524 168 63 1 72 234 1 168 2.62e-65 200
Msa0930270 AT4G31330.1 38.356 219 122 4 1 206 1 219 5.47e-40 138
Msa0930270 AT5G10580.3 36.449 214 123 3 6 206 8 221 1.43e-36 129
Msa0930270 AT5G10580.1 36.449 214 123 3 6 206 8 221 1.71e-36 129
Msa0930270 AT5G10580.4 36.449 214 123 3 6 206 8 221 1.71e-36 129
Msa0930270 AT5G46060.1 35.622 233 140 3 6 232 10 238 2.24e-34 124
Msa0930270 AT5G24790.1 31.557 244 155 5 1 232 1 244 3.48e-29 110
Msa0930270 AT5G10580.2 37.419 155 92 2 6 155 8 162 1.46e-25 99.4
Msa0930270 AT5G43180.1 29.956 227 138 3 1 206 1 227 3.32e-21 89.0

Find 50 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGTCCTATGGATTTA+TGG 0.072565 6_2:+79129339 Msa0930270:CDS
CACTTGTCCTATGGATTTAT+GGG 0.267343 6_2:+79129340 Msa0930270:CDS
CACCCTTCTAGCACTGTTAT+TGG 0.273016 6_2:+79127400 Msa0930270:CDS
GAAGATGGAAATAAAGGATT+TGG 0.273589 6_2:+79127303 Msa0930270:exon
TTTGATTCCTGTTGGTATAT+TGG 0.290453 6_2:+79127333 Msa0930270:CDS
GAGGAAGAAGATGGAAATAA+AGG 0.302788 6_2:+79127297 Msa0930270:exon
ATCTTCACATTAAGTCCTTC+AGG 0.309856 6_2:+79129442 Msa0930270:CDS
TTCAGTGGTTGGTAACAATA+AGG 0.315009 6_2:+79127185 Msa0930270:five_prime_UTR
ATCACACTAAGTTCACTAAT+TGG 0.318979 6_2:+79129045 Msa0930270:CDS
TTCTTGGTCTCTTGGTTTGA+GGG 0.329290 6_2:+79129299 Msa0930270:CDS
TGTTGTTAATTTATCATGTT+TGG 0.345080 6_2:+79127356 Msa0930270:CDS
ACCTGCACTCAAAGGCAAAA+AGG 0.351627 6_2:+79129233 Msa0930270:CDS
TGAACCGTGGAAGTTATTCT+TGG 0.354981 6_2:+79129283 Msa0930270:CDS
GAATAACAGTTACATATATA+TGG 0.360421 6_2:-79129509 None:intergenic
GGAAGTTATTCTTGGTCTCT+TGG 0.373865 6_2:+79129291 Msa0930270:CDS
AAACCAATAACAGTGCTAGA+AGG 0.374290 6_2:-79127403 None:intergenic
ATTCTTGGTCTCTTGGTTTG+AGG 0.377647 6_2:+79129298 Msa0930270:CDS
AACTATCCGCAACAATATAA+TGG 0.386563 6_2:+79128996 Msa0930270:CDS
CGTCAATTCCACTTGTCCTA+TGG 0.395468 6_2:+79129331 Msa0930270:CDS
GAGGGAAAGTACTGAGGAAG+TGG 0.420276 6_2:+79129467 Msa0930270:CDS
CAAAGCAAAGAGGAAGAAGA+TGG 0.451707 6_2:+79127288 Msa0930270:exon
AACAACACCAATATACCAAC+AGG 0.469092 6_2:-79127340 None:intergenic
GAACAAATAAACATTGGTAT+TGG 0.469367 6_2:-79129363 None:intergenic
AGTGGATGCAGCAGCAGCAT+AGG 0.480697 6_2:+79129485 Msa0930270:CDS
GTCTTTATCTTTATTTAACT+AGG 0.519464 6_2:+79126959 None:intergenic
TCTTCACATTAAGTCCTTCA+GGG 0.530321 6_2:+79129443 Msa0930270:CDS
CATTAAGTCCTTCAGGGAGA+GGG 0.540101 6_2:+79129449 Msa0930270:CDS
AGCACTACACTTTCAGTGGT+TGG 0.540140 6_2:+79127174 Msa0930270:five_prime_UTR
AACCAATAACAGTGCTAGAA+GGG 0.540211 6_2:-79127402 None:intergenic
ACATTAAGTCCTTCAGGGAG+AGG 0.548609 6_2:+79129448 Msa0930270:CDS
ATCAATACACCTGCACTCAA+AGG 0.557800 6_2:+79129225 Msa0930270:CDS
GTTTGACAATTGACTTGAAG+AGG 0.564464 6_2:+79127260 Msa0930270:five_prime_UTR
GCATAGCACTACACTTTCAG+TGG 0.568460 6_2:+79127170 Msa0930270:five_prime_UTR
AGTACTTTCCCTCTCCCTGA+AGG 0.568724 6_2:-79129457 None:intergenic
TAGATGCCATTATATTGTTG+CGG 0.587400 6_2:-79129002 None:intergenic
GTATTGGCCCATAAATCCAT+AGG 0.599604 6_2:-79129347 None:intergenic
AAGATCCCTTGTGATTTGAG+TGG 0.602812 6_2:-79129424 None:intergenic
AAACAAGAACAAATAAACAT+TGG 0.604030 6_2:-79129369 None:intergenic
CCATAAATCCATAGGACAAG+TGG 0.605429 6_2:-79129339 None:intergenic
TAACAGTGCTAGAAGGGTGT+CGG 0.609595 6_2:-79127396 None:intergenic
ACATCATGAAAAGAGTCCAC+TGG 0.623254 6_2:-79127444 None:intergenic
ATACAACCACTCAAATCACA+AGG 0.654100 6_2:+79129418 Msa0930270:CDS
GAGACCAAGAATAACTTCCA+CGG 0.654635 6_2:-79129287 None:intergenic
ATGCTCAGTCTCGTTACCAG+TGG 0.659913 6_2:+79127428 Msa0930270:CDS
AGAGGCAAAGCAAAGCAAAG+AGG 0.660273 6_2:+79127278 Msa0930270:five_prime_UTR
CAGGGAGAGGGAAAGTACTG+AGG 0.672783 6_2:+79129461 Msa0930270:CDS
GTGTGTGTGTGATAATGAGG+TGG 0.676728 6_2:+79127093 Msa0930270:five_prime_UTR
AAGGTTACTGAGTGAGTGAG+TGG 0.690599 6_2:+79127204 Msa0930270:five_prime_UTR
TACAACCACTCAAATCACAA+GGG 0.726346 6_2:+79129419 Msa0930270:CDS
TATTACATAGAAATGCAACA+AGG 0.733545 6_2:-79129164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAAATACAAAATGTTA+AGG - chr6_2:79127528-79127547 None:intergenic 15.0%
!!! TTTGTATTTATCTTTTGTTT+AGG + chr6_2:79127534-79127553 Msa0930270:intron 15.0%
!! AAAAGTAAAAAAATATGAAG+CGG - chr6_2:79127655-79127674 None:intergenic 15.0%
!!! ATGTATAAATATGTCTTATT+GGG - chr6_2:79127981-79128000 None:intergenic 15.0%
!! TATGTATAAATATGTCTTAT+TGG - chr6_2:79127982-79128001 None:intergenic 15.0%
!!! TTTGAATTTCATCACATTTT+TGG + chr6_2:79127122-79127141 Msa0930270:five_prime_UTR 20.0%
!! TGTTGTTAATTTATCATGTT+TGG + chr6_2:79127356-79127375 Msa0930270:CDS 20.0%
!! AAATGTTGAATATATAAGAG+AGG + chr6_2:79127886-79127905 Msa0930270:intron 20.0%
!!! TGTATAAATATGTCTTATTG+GGG - chr6_2:79127980-79127999 None:intergenic 20.0%
!! ACTTATGAAAACAACTTTAT+TGG - chr6_2:79128101-79128120 None:intergenic 20.0%
!!! TACTGTTTTAATTGTTTTTC+TGG + chr6_2:79128818-79128837 Msa0930270:intron 20.0%
!!! GTTTTGTTCAATTTATGTTT+TGG + chr6_2:79128840-79128859 Msa0930270:intron 20.0%
!!! TTTTTATCAAAACTGTTAGT+GGG - chr6_2:79128910-79128929 None:intergenic 20.0%
!!! TTTTTTATCAAAACTGTTAG+TGG - chr6_2:79128911-79128930 None:intergenic 20.0%
!!! TATTGCATATATTTGTTTTC+AGG + chr6_2:79128942-79128961 Msa0930270:intron 20.0%
!!! ACGTTTTATTGAAGAATTAA+GGG - chr6_2:79129124-79129143 None:intergenic 20.0%
!! AAACAAGAACAAATAAACAT+TGG - chr6_2:79129372-79129391 None:intergenic 20.0%
!!! ATCATTTATTTTGTACTTCT+TGG + chr6_2:79129395-79129414 Msa0930270:CDS 20.0%
!! GAATAACAGTTACATATATA+TGG - chr6_2:79129512-79129531 None:intergenic 20.0%
! TCAACAGATAAAAACAAGAA+GGG - chr6_2:79127494-79127513 None:intergenic 25.0%
!!! TGTTTTTATCTGTTGACATT+TGG + chr6_2:79127498-79127517 Msa0930270:intron 25.0%
!! TCACTTCACATACATATTTT+TGG + chr6_2:79127819-79127838 Msa0930270:intron 25.0%
!! CACTTCACATACATATTTTT+GGG + chr6_2:79127820-79127839 Msa0930270:intron 25.0%
! TACATATCTATGTGTATGAT+TGG + chr6_2:79127996-79128015 Msa0930270:intron 25.0%
! ATATGCCTTTGACAAAATTA+CGG - chr6_2:79128060-79128079 None:intergenic 25.0%
!!! TAGTACTAAAAAGTGTTTCA+CGG - chr6_2:79128533-79128552 None:intergenic 25.0%
! CATTGTATTCAATAGATTTC+TGG + chr6_2:79128876-79128895 Msa0930270:intron 25.0%
! TTTGTTGCCAAAAACTAATT+TGG - chr6_2:79129097-79129116 None:intergenic 25.0%
!!! GACGTTTTATTGAAGAATTA+AGG - chr6_2:79129125-79129144 None:intergenic 25.0%
! TATTACATAGAAATGCAACA+AGG - chr6_2:79129167-79129186 None:intergenic 25.0%
! GAACAAATAAACATTGGTAT+TGG - chr6_2:79129366-79129385 None:intergenic 25.0%
GAGTGGTGAAAAATTAAGAA+AGG + chr6_2:79127221-79127240 Msa0930270:five_prime_UTR 30.0%
!!! GAAAGGTAAAGTTTGTTTTG+AGG + chr6_2:79127238-79127257 Msa0930270:five_prime_UTR 30.0%
GAAGATGGAAATAAAGGATT+TGG + chr6_2:79127303-79127322 Msa0930270:exon 30.0%
!!! GATTATGTTTTGATTCCTGT+TGG + chr6_2:79127325-79127344 Msa0930270:CDS 30.0%
TTTGATTCCTGTTGGTATAT+TGG + chr6_2:79127333-79127352 Msa0930270:CDS 30.0%
GTCAACAGATAAAAACAAGA+AGG - chr6_2:79127495-79127514 None:intergenic 30.0%
ACAATAACTAACATGAAGTG+TGG - chr6_2:79127585-79127604 None:intergenic 30.0%
TAAAGGTCAAAACTGAGAAT+TGG + chr6_2:79127707-79127726 Msa0930270:intron 30.0%
!!! TTTTGGGTTTTAAGTGTAAG+TGG + chr6_2:79127836-79127855 Msa0930270:intron 30.0%
TTCAACATTTATCCATTCAC+AGG - chr6_2:79127876-79127895 None:intergenic 30.0%
TTGAATATATAAGAGAGGTG+AGG + chr6_2:79127891-79127910 Msa0930270:intron 30.0%
TATCTATGTGTATGATTGGT+TGG + chr6_2:79128000-79128019 Msa0930270:intron 30.0%
TCTAATTCTGTCAAACTTAC+CGG - chr6_2:79128030-79128049 None:intergenic 30.0%
ATAGCCAGTTACAACATTTA+TGG - chr6_2:79128262-79128281 None:intergenic 30.0%
!! TAGTTTTCTGGAAAAACTCT+TGG + chr6_2:79128352-79128371 Msa0930270:intron 30.0%
!! AGTTTTCTGGAAAAACTCTT+GGG + chr6_2:79128353-79128372 Msa0930270:intron 30.0%
ATTAGAGATCGAGATATCAA+AGG + chr6_2:79128417-79128436 Msa0930270:intron 30.0%
TTAGAGATCGAGATATCAAA+GGG + chr6_2:79128418-79128437 Msa0930270:intron 30.0%
CCAAATTCCAATAGGTATAT+CGG - chr6_2:79128494-79128513 None:intergenic 30.0%
! CAGTTTTTCCAAATTCCAAT+AGG - chr6_2:79128502-79128521 None:intergenic 30.0%
TTGTCAAATAGATGCTATAG+CGG + chr6_2:79128557-79128576 Msa0930270:intron 30.0%
! AGTTGACATCATTGATTGAA+AGG + chr6_2:79128620-79128639 Msa0930270:intron 30.0%
! GTTGACATCATTGATTGAAA+GGG + chr6_2:79128621-79128640 Msa0930270:intron 30.0%
! TTGACATCATTGATTGAAAG+GGG + chr6_2:79128622-79128641 Msa0930270:intron 30.0%
! TTCTTTTTCTTCCTCAACAA+TGG + chr6_2:79128653-79128672 Msa0930270:intron 30.0%
! TCTTTTTCTTCCTCAACAAT+GGG + chr6_2:79128654-79128673 Msa0930270:intron 30.0%
!! AAAACTGTTAGTGGGTTTAA+TGG - chr6_2:79128902-79128921 None:intergenic 30.0%
TTTCAGGATCCAATGAAAAA+TGG + chr6_2:79128958-79128977 Msa0930270:intron 30.0%
TTCAGGATCCAATGAAAAAT+GGG + chr6_2:79128959-79128978 Msa0930270:intron 30.0%
AACTATCCGCAACAATATAA+TGG + chr6_2:79128996-79129015 Msa0930270:CDS 30.0%
TAGATGCCATTATATTGTTG+CGG - chr6_2:79129005-79129024 None:intergenic 30.0%
ATCACACTAAGTTCACTAAT+TGG + chr6_2:79129045-79129064 Msa0930270:CDS 30.0%
!!! ACAGAGACCAAATTAGTTTT+TGG + chr6_2:79129087-79129106 Msa0930270:CDS 30.0%
!!! ATTTTTGGAGTGTTGTGTTG+TGG + chr6_2:79127137-79127156 Msa0930270:five_prime_UTR 35.0%
!!! TTTTTGGAGTGTTGTGTTGT+GGG + chr6_2:79127138-79127157 Msa0930270:five_prime_UTR 35.0%
!! TTCAGTGGTTGGTAACAATA+AGG + chr6_2:79127185-79127204 Msa0930270:five_prime_UTR 35.0%
!! GTTTGACAATTGACTTGAAG+AGG + chr6_2:79127260-79127279 Msa0930270:five_prime_UTR 35.0%
GAGGAAGAAGATGGAAATAA+AGG + chr6_2:79127297-79127316 Msa0930270:exon 35.0%
AACAACACCAATATACCAAC+AGG - chr6_2:79127343-79127362 None:intergenic 35.0%
AACCAATAACAGTGCTAGAA+GGG - chr6_2:79127405-79127424 None:intergenic 35.0%
AAACCAATAACAGTGCTAGA+AGG - chr6_2:79127406-79127425 None:intergenic 35.0%
CGTATATGCTATCATTTGTC+TGG - chr6_2:79127626-79127645 None:intergenic 35.0%
!!! GGTTTTAAGTGTAAGTGGTT+AGG + chr6_2:79127841-79127860 Msa0930270:intron 35.0%
! ATATGTCTTATTGGGGAGTT+CGG - chr6_2:79127973-79127992 None:intergenic 35.0%
! GTGTACCGTAATTTTGTCAA+AGG + chr6_2:79128052-79128071 Msa0930270:intron 35.0%
AGTTCAAAGCTTGTATTCAG+TGG + chr6_2:79128295-79128314 Msa0930270:intron 35.0%
GGTTTATACAAGTAGCATAC+TGG + chr6_2:79128316-79128335 Msa0930270:intron 35.0%
AGCAATGTTAGCTATAGCAA+CGG + chr6_2:79128464-79128483 Msa0930270:intron 35.0%
CCGATATACCTATTGGAATT+TGG + chr6_2:79128491-79128510 Msa0930270:intron 35.0%
CCAATATGATAGAGTTCCTT+TGG - chr6_2:79128690-79128709 None:intergenic 35.0%
CCAAAGGAACTCTATCATAT+TGG + chr6_2:79128687-79128706 Msa0930270:intron 35.0%
! ATGAACACCAAGATTTTACG+TGG - chr6_2:79128770-79128789 None:intergenic 35.0%
TCAGGATCCAATGAAAAATG+GGG + chr6_2:79128960-79128979 Msa0930270:intron 35.0%
TCCAATGAAAAATGGGGTAT+TGG + chr6_2:79128966-79128985 Msa0930270:CDS 35.0%
CACTTGTCCTATGGATTTAT+GGG + chr6_2:79129340-79129359 Msa0930270:CDS 35.0%
ATACAACCACTCAAATCACA+AGG + chr6_2:79129418-79129437 Msa0930270:CDS 35.0%
TACAACCACTCAAATCACAA+GGG + chr6_2:79129419-79129438 Msa0930270:CDS 35.0%
ATCTTCACATTAAGTCCTTC+AGG + chr6_2:79129442-79129461 Msa0930270:CDS 35.0%
TCTTCACATTAAGTCCTTCA+GGG + chr6_2:79129443-79129462 Msa0930270:CDS 35.0%
! TGTGTGTGTGTGTGATAATG+AGG + chr6_2:79127090-79127109 Msa0930270:five_prime_UTR 40.0%
!!! TTTTGGAGTGTTGTGTTGTG+GGG + chr6_2:79127139-79127158 Msa0930270:five_prime_UTR 40.0%
CAAAGCAAAGAGGAAGAAGA+TGG + chr6_2:79127288-79127307 Msa0930270:exon 40.0%
ACATCATGAAAAGAGTCCAC+TGG - chr6_2:79127447-79127466 None:intergenic 40.0%
TGAAAAGACAGCTCAAGTGA+GGG - chr6_2:79127802-79127821 None:intergenic 40.0%
! TATGTCTTATTGGGGAGTTC+GGG - chr6_2:79127972-79127991 None:intergenic 40.0%
! TGTATGATTGGTTGGACTAC+CGG + chr6_2:79128008-79128027 Msa0930270:intron 40.0%
AATCTGTCACACACAGTTAC+TGG + chr6_2:79128236-79128255 Msa0930270:intron 40.0%
CTGGCCATAAATGTTGTAAC+TGG + chr6_2:79128255-79128274 Msa0930270:intron 40.0%
CGGTATACCGATATACCTAT+TGG + chr6_2:79128484-79128503 Msa0930270:intron 40.0%
! CACCAAGATTTTACGTGGTT+CGG - chr6_2:79128765-79128784 None:intergenic 40.0%
!! GCCAATACCCCATTTTTCAT+TGG - chr6_2:79128970-79128989 None:intergenic 40.0%
ATCAATACACCTGCACTCAA+AGG + chr6_2:79129225-79129244 Msa0930270:CDS 40.0%
GTTGCAAAAACATTGAACCG+TGG + chr6_2:79129270-79129289 Msa0930270:CDS 40.0%
TGAACCGTGGAAGTTATTCT+TGG + chr6_2:79129283-79129302 Msa0930270:CDS 40.0%
GAGACCAAGAATAACTTCCA+CGG - chr6_2:79129290-79129309 None:intergenic 40.0%
GGAAGTTATTCTTGGTCTCT+TGG + chr6_2:79129291-79129310 Msa0930270:CDS 40.0%
! ATTCTTGGTCTCTTGGTTTG+AGG + chr6_2:79129298-79129317 Msa0930270:CDS 40.0%
! TTCTTGGTCTCTTGGTTTGA+GGG + chr6_2:79129299-79129318 Msa0930270:CDS 40.0%
CCATAAATCCATAGGACAAG+TGG - chr6_2:79129342-79129361 None:intergenic 40.0%
CCACTTGTCCTATGGATTTA+TGG + chr6_2:79129339-79129358 Msa0930270:CDS 40.0%
! GTATTGGCCCATAAATCCAT+AGG - chr6_2:79129350-79129369 None:intergenic 40.0%
AAGATCCCTTGTGATTTGAG+TGG - chr6_2:79129427-79129446 None:intergenic 40.0%
! GTGTGTGTGTGATAATGAGG+TGG + chr6_2:79127093-79127112 Msa0930270:five_prime_UTR 45.0%
GCATAGCACTACACTTTCAG+TGG + chr6_2:79127170-79127189 Msa0930270:five_prime_UTR 45.0%
AGCACTACACTTTCAGTGGT+TGG + chr6_2:79127174-79127193 Msa0930270:five_prime_UTR 45.0%
AAGGTTACTGAGTGAGTGAG+TGG + chr6_2:79127204-79127223 Msa0930270:five_prime_UTR 45.0%
AGAGGCAAAGCAAAGCAAAG+AGG + chr6_2:79127278-79127297 Msa0930270:five_prime_UTR 45.0%
! TAACAGTGCTAGAAGGGTGT+CGG - chr6_2:79127399-79127418 None:intergenic 45.0%
CACCCTTCTAGCACTGTTAT+TGG + chr6_2:79127400-79127419 Msa0930270:CDS 45.0%
ACAAGAAGGGATAGAGAGAG+AGG - chr6_2:79127481-79127500 None:intergenic 45.0%
AACTATGTAGCCCCTCATTG+TGG + chr6_2:79127746-79127765 Msa0930270:intron 45.0%
ACTATGTAGCCCCTCATTGT+GGG + chr6_2:79127747-79127766 Msa0930270:intron 45.0%
GAAAAGACAGCTCAAGTGAG+GGG - chr6_2:79127801-79127820 None:intergenic 45.0%
GTGAAAAGACAGCTCAAGTG+AGG - chr6_2:79127803-79127822 None:intergenic 45.0%
AGGTCTCATATGCCTGTGAA+TGG + chr6_2:79127861-79127880 Msa0930270:intron 45.0%
CAATAGCAGGTCAATGCTTC+AGG - chr6_2:79127936-79127955 None:intergenic 45.0%
TCCAGAAAACTACCAACGCT+GGG - chr6_2:79128344-79128363 None:intergenic 45.0%
TTCCAGAAAACTACCAACGC+TGG - chr6_2:79128345-79128364 None:intergenic 45.0%
! CATCATTGATTGAAAGGGGC+TGG + chr6_2:79128626-79128645 Msa0930270:intron 45.0%
TCTCTTGCTTCCCATTGTTG+AGG - chr6_2:79128667-79128686 None:intergenic 45.0%
AATGGGAAGCAAGAGACCAA+AGG + chr6_2:79128671-79128690 Msa0930270:intron 45.0%
! TCCTTGTTGCTTCGTCTCTA+AGG + chr6_2:79128739-79128758 Msa0930270:intron 45.0%
ACCTGCACTCAAAGGCAAAA+AGG + chr6_2:79129233-79129252 Msa0930270:CDS 45.0%
! TCCTTTTTGCCTTTGAGTGC+AGG - chr6_2:79129237-79129256 None:intergenic 45.0%
CGTCAATTCCACTTGTCCTA+TGG + chr6_2:79129331-79129350 Msa0930270:CDS 45.0%
ACATTAAGTCCTTCAGGGAG+AGG + chr6_2:79129448-79129467 Msa0930270:CDS 45.0%
CATTAAGTCCTTCAGGGAGA+GGG + chr6_2:79129449-79129468 Msa0930270:CDS 45.0%
!!! AATATTTTTAATTATCTATT+AGG - chr6_2:79127688-79127707 None:intergenic 5.0%
!! TAGATAATTAAAAATATTAA+AGG + chr6_2:79127690-79127709 Msa0930270:intron 5.0%
ATGCTCAGTCTCGTTACCAG+TGG + chr6_2:79127428-79127447 Msa0930270:CDS 50.0%
TGCTTCAGGACCACAAGAGA+GGG - chr6_2:79127922-79127941 None:intergenic 50.0%
ATGCTTCAGGACCACAAGAG+AGG - chr6_2:79127923-79127942 None:intergenic 50.0%
GCAGCAGTAATGCTGCATAC+TGG + chr6_2:79128169-79128188 Msa0930270:intron 50.0%
!!! ACCCAGCGTTGGTAGTTTTC+TGG + chr6_2:79128340-79128359 Msa0930270:intron 50.0%
! CATTGATTGAAAGGGGCTGG+AGG + chr6_2:79128629-79128648 Msa0930270:intron 50.0%
GCCTTAGAGACGAAGCAACA+AGG - chr6_2:79128743-79128762 None:intergenic 50.0%
GGCCGAACCACGTAAAATCT+TGG + chr6_2:79128760-79128779 Msa0930270:intron 50.0%
AGTACTTTCCCTCTCCCTGA+AGG - chr6_2:79129460-79129479 None:intergenic 50.0%
!! GAGGGAAAGTACTGAGGAAG+TGG + chr6_2:79129467-79129486 Msa0930270:CDS 50.0%
TGTAGCCCCTCATTGTGGGA+CGG + chr6_2:79127751-79127770 Msa0930270:intron 55.0%
! TGAGGCATCTCCCTCTCTTG+TGG + chr6_2:79127909-79127928 Msa0930270:intron 55.0%
!! AGAGTGCTGGGAGCAATAGC+AGG - chr6_2:79127949-79127968 None:intergenic 55.0%
AGCATACTGGAACCCAGCGT+TGG + chr6_2:79128329-79128348 Msa0930270:intron 55.0%
!! CAGGGAGAGGGAAAGTACTG+AGG + chr6_2:79129461-79129480 Msa0930270:CDS 55.0%
AGTGGATGCAGCAGCAGCAT+AGG + chr6_2:79129485-79129504 Msa0930270:CDS 55.0%
GTCCTCCGTCCCACAATGAG+GGG - chr6_2:79127759-79127778 None:intergenic 60.0%
CGTCCTCCGTCCCACAATGA+GGG - chr6_2:79127760-79127779 None:intergenic 60.0%
ACGTCCTCCGTCCCACAATG+AGG - chr6_2:79127761-79127780 None:intergenic 60.0%
TCATTGTGGGACGGAGGACG+TGG + chr6_2:79127760-79127779 Msa0930270:intron 60.0%
AGCCCCTCATTGTGGGACGG+AGG + chr6_2:79127754-79127773 Msa0930270:intron 65.0%
!! GGGGAGTTCGGGAGAGTGCT+GGG - chr6_2:79127961-79127980 None:intergenic 65.0%
! TGGGGAGTTCGGGAGAGTGC+TGG - chr6_2:79127962-79127981 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79126961 79129643 79126961 ID=Msa0930270;Name=Msa0930270
chr6_2 mRNA 79126961 79129643 79126961 ID=Msa0930270-mRNA-1;Parent=Msa0930270;Name=Msa0930270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=346|1|1|1|1|1|2|137|234
chr6_2 exon 79126961 79127468 79126961 ID=Msa0930270-mRNA-1:exon:13509;Parent=Msa0930270-mRNA-1
chr6_2 exon 79128964 79129643 79128964 ID=Msa0930270-mRNA-1:exon:13510;Parent=Msa0930270-mRNA-1
chr6_2 five_prime_UTR 79126961 79127306 79126961 ID=Msa0930270-mRNA-1:five_prime_utr;Parent=Msa0930270-mRNA-1
chr6_2 CDS 79127307 79127468 79127307 ID=Msa0930270-mRNA-1:cds;Parent=Msa0930270-mRNA-1
chr6_2 CDS 79128964 79129506 79128964 ID=Msa0930270-mRNA-1:cds;Parent=Msa0930270-mRNA-1
chr6_2 three_prime_UTR 79129507 79129643 79129507 ID=Msa0930270-mRNA-1:three_prime_utr;Parent=Msa0930270-mRNA-1
Gene Sequence

>Msa0930270

ATGGAAATAAAGGATTTGGATTATGTTTTGATTCCTGTTGGTATATTGGTGTTGTTAATTTATCATGTTTGGCTTCTCTACACTATAATCCGACACCCTTCTAGCACTGTTATTGGTTTGAATGCTCAGTCTCGTTACCAGTGGACTCTTTTCATGATGTCTGATCCAATGAAAAATGGGGTATTGGCTGTTCAAACTATCCGCAACAATATAATGGCATCTACTCTACTAGCTACAACAGCAATCACACTAAGTTCACTAATTGGAGTTTTTGCAAGCAATGAGACAGAGACCAAATTAGTTTTTGGCAACAAAACTTCCCTTAATTCTTCAATAAAACGTCTTTCTATCTCGTTATGCTTCCTTGTTGCATTTCTATGTAATATGCAGTCTATAAGATACTATGCACATGTGAGTTTCTTAATCAATACACCTGCACTCAAAGGCAAAAAGGATTTTATTGAATATGTTGCAAAAACATTGAACCGTGGAAGTTATTCTTGGTCTCTTGGTTTGAGGGCTTTCTACACGTCAATTCCACTTGTCCTATGGATTTATGGGCCAATACCAATGTTTATTTGTTCTTGTTTCACATCATTTATTTTGTACTTCTTGGATACAACCACTCAAATCACAAGGGATCTTCACATTAAGTCCTTCAGGGAGAGGGAAAGTACTGAGGAAGTGGATGCAGCAGCAGCATAG
Protein sequence

>Msa0930270

MEIKDLDYVLIPVGILVLLIYHVWLLYTIIRHPSSTVIGLNAQSRYQWTLFMMSDPMKNGVLAVQTIRNNIMASTLLATTAITLSSLIGVFASNETETKLVFGNKTSLNSSIKRLSISLCFLVAFLCNMQSIRYYAHVSFLINTPALKGKKDFIEYVAKTLNRGSYSWSLGLRAFYTSIPLVLWIYGPIPMFICSCFTSFILYFLDTTTQITRDLHIKSFRERESTEEVDAAAA*