Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230400 | XP_003626893.1 | 98.556 | 277 | 4 | 0 | 1 | 277 | 1 | 277 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230400 | sp|Q9SRS9|CHIP_ARATH | 66.790 | 271 | 89 | 1 | 7 | 276 | 6 | 276 | 2.08e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230400 | G7LEE6 | 98.556 | 277 | 4 | 0 | 1 | 277 | 1 | 277 | 0.0 | 572 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1230400 | Msa1311270 | 0.888656 | 4.865114e-73 | -8.615850e-47 |
| Msa1182150 | Msa1230400 | 0.971822 | 9.001092e-134 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230400 | MtrunA17_Chr8g0338781 | 98.556 | 277 | 4 | 0 | 1 | 277 | 1 | 277 | 0.0 | 572 |
| Msa1230400 | MtrunA17_Chr8g0393041 | 36.000 | 100 | 64 | 0 | 9 | 108 | 477 | 576 | 4.68e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230400 | AT3G07370.1 | 66.790 | 271 | 89 | 1 | 7 | 276 | 6 | 276 | 2.12e-133 | 379 |
| Msa1230400 | AT2G42810.3 | 35.000 | 100 | 65 | 0 | 6 | 105 | 8 | 107 | 1.02e-12 | 68.2 |
| Msa1230400 | AT2G42810.2 | 35.000 | 100 | 65 | 0 | 6 | 105 | 8 | 107 | 1.08e-12 | 68.2 |
| Msa1230400 | AT2G42810.1 | 35.000 | 100 | 65 | 0 | 6 | 105 | 8 | 107 | 1.11e-12 | 68.2 |
| Msa1230400 | AT2G42810.5 | 35.000 | 100 | 65 | 0 | 6 | 105 | 8 | 107 | 1.11e-12 | 68.2 |
| Msa1230400 | AT2G42810.4 | 35.000 | 100 | 65 | 0 | 6 | 105 | 8 | 107 | 1.11e-12 | 68.2 |
Find 92 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATGTTTATATCTATTA+TGG | 0.122290 | 8_2:+6408655 | None:intergenic |
| GTGAAATAAACGGGAACATT+AGG | 0.241807 | 8_2:+6408392 | None:intergenic |
| GGAAGCAGTCCATGAATATT+TGG | 0.256879 | 8_2:-6404821 | Msa1230400:CDS |
| ATGATTAAGGCTTTGGATCT+TGG | 0.294525 | 8_2:-6405673 | Msa1230400:intron |
| TAGTATCAAACTTGGCCATT+AGG | 0.302713 | 8_2:-6404843 | Msa1230400:CDS |
| GCTATATGGTTGAAGAAATA+TGG | 0.307159 | 8_2:-6405630 | Msa1230400:CDS |
| CATGTTTGTCCAAATATTCA+TGG | 0.335834 | 8_2:+6404812 | None:intergenic |
| TGTTTAAAGTCACAACATTA+AGG | 0.340045 | 8_2:+6404649 | None:intergenic |
| AGTATCAAACTTGGCCATTA+GGG | 0.343618 | 8_2:-6404842 | Msa1230400:CDS |
| AGAAAGGTAACAACGAGTTT+TGG | 0.354531 | 8_2:+6408787 | None:intergenic |
| CTAATGTTTATATCTATTAT+GGG | 0.365363 | 8_2:+6408656 | None:intergenic |
| TGATTAAGGCTTTGGATCTT+GGG | 0.370465 | 8_2:-6405672 | Msa1230400:intron |
| ATTCTACAGCATAGATGATC+TGG | 0.375119 | 8_2:+6405091 | None:intergenic |
| TGTCTCACCGCCGAAGCGTT+TGG | 0.375818 | 8_2:+6408606 | None:intergenic |
| TGCCAATCCAAAGGGCTATA+TGG | 0.378410 | 8_2:-6405644 | Msa1230400:CDS |
| AAACATATGAAGTGTACATA+TGG | 0.398153 | 8_2:-6404631 | Msa1230400:three_prime_UTR |
| AGGAAGGAACCACAGCAAAT+TGG | 0.398578 | 8_2:+6404496 | None:intergenic |
| GCTGGACAGTCATTCTGTTA+AGG | 0.400835 | 8_2:-6408096 | Msa1230400:intron |
| TGAAATAAACGGGAACATTA+GGG | 0.405625 | 8_2:+6408393 | None:intergenic |
| GTTTATATCTATTATGGGTA+TGG | 0.406386 | 8_2:+6408661 | None:intergenic |
| AGCACGATTGGTGAAATAAA+CGG | 0.411396 | 8_2:+6408382 | None:intergenic |
| TAGTGAATGGGAGAGGGTTG+AGG | 0.418045 | 8_2:-6408141 | Msa1230400:CDS |
| CAGCCTCCAACTGTTTCAAA+TGG | 0.427517 | 8_2:+6405255 | None:intergenic |
| TACTTCCCATTTGAAACAGT+TGG | 0.428647 | 8_2:-6405261 | Msa1230400:CDS |
| CTCTCATATGTATGTCCACT+TGG | 0.429519 | 8_2:+6405034 | None:intergenic |
| TTCATGGACTGCTTCCCTAA+TGG | 0.443363 | 8_2:+6404828 | None:intergenic |
| TCTTCAACCATATAGCCCTT+TGG | 0.445205 | 8_2:+6405637 | None:intergenic |
| CTGCAATTCCCATGATCGTT+GGG | 0.452825 | 8_2:+6405561 | None:intergenic |
| CATCGATGGCGGCATTAAAA+CGG | 0.453965 | 8_2:+6408538 | None:intergenic |
| GTTCATCGTCCCAACGATCA+TGG | 0.454029 | 8_2:-6405570 | Msa1230400:CDS |
| CTAAAAGAATTGTGGAAGAG+AGG | 0.456100 | 8_2:-6404475 | Msa1230400:three_prime_UTR |
| GGAGATAAGATGAGAGATAG+AGG | 0.463250 | 8_2:+6404439 | None:intergenic |
| TTATTTGTAGTGAATGGGAG+AGG | 0.470473 | 8_2:-6408148 | Msa1230400:intron |
| TTTCAGGCACACTATATGTT+GGG | 0.471344 | 8_2:-6407078 | Msa1230400:intron |
| GCACGATTGGTGAAATAAAC+GGG | 0.471720 | 8_2:+6408383 | None:intergenic |
| ATGGTTTATTATGTGAATGA+AGG | 0.472257 | 8_2:+6408680 | None:intergenic |
| TTGGTTTATTTGTAGTGAAT+GGG | 0.476814 | 8_2:-6408153 | Msa1230400:intron |
| AACCATATAGCCCTTTGGAT+TGG | 0.479080 | 8_2:+6405642 | None:intergenic |
| ATTTCAGGCACACTATATGT+TGG | 0.479123 | 8_2:-6407079 | Msa1230400:intron |
| AGCTTGTAAGTCTGCTCTAA+AGG | 0.479880 | 8_2:-6405333 | Msa1230400:CDS |
| GATGATGTGTTGTGCAAGAT+TGG | 0.481726 | 8_2:-6404698 | Msa1230400:three_prime_UTR |
| ATAAGATGAGAGATAGAGGT+AGG | 0.481736 | 8_2:+6404443 | None:intergenic |
| AGAAATGAGGCCAAACGCTT+CGG | 0.490570 | 8_2:-6408616 | Msa1230400:exon |
| TGTGTATACATTTAAGTGCC+TGG | 0.498036 | 8_2:-6404572 | Msa1230400:three_prime_UTR |
| ATCACATTACCTTCTGAAGA+TGG | 0.509877 | 8_2:+6404996 | None:intergenic |
| TTCCCATTTGAAACAGTTGG+AGG | 0.511106 | 8_2:-6405258 | Msa1230400:CDS |
| GTTCCTTCCTAAAAGAATTG+TGG | 0.514532 | 8_2:-6404483 | Msa1230400:three_prime_UTR |
| CATGAATATTTGGACAAACA+TGG | 0.516494 | 8_2:-6404811 | Msa1230400:CDS |
| ACCGTCGTTTCGCAAAAGCT+CGG | 0.522294 | 8_2:+6408581 | None:intergenic |
| TTCTAGAAGAGCAATTCAGC+TGG | 0.523922 | 8_2:-6408114 | Msa1230400:CDS |
| CGGAGAGTACCGATGAAGAA+AGG | 0.524164 | 8_2:+6408771 | None:intergenic |
| TCCTCAATTTGAATCATCAA+AGG | 0.524893 | 8_2:+6404418 | None:intergenic |
| AAGTTTGATACTAGTTGTGA+TGG | 0.528930 | 8_2:+6404853 | None:intergenic |
| AGCCTCCAACTGTTTCAAAT+GGG | 0.534587 | 8_2:+6405256 | None:intergenic |
| AAGGCTTTGGATCTTGGGAG+AGG | 0.536466 | 8_2:-6405667 | Msa1230400:CDS |
| TCGTTGTTACCTTTCTTCAT+CGG | 0.536813 | 8_2:-6408780 | Msa1230400:five_prime_UTR |
| TTCATCGTCCCAACGATCAT+GGG | 0.536937 | 8_2:-6405569 | Msa1230400:CDS |
| TTTATTTGACCAATTTGCTG+TGG | 0.538465 | 8_2:-6404505 | Msa1230400:three_prime_UTR |
| TATTTGTAGTGAATGGGAGA+GGG | 0.542095 | 8_2:-6408147 | Msa1230400:intron |
| TCAAGTGGTTCCCTCGTGAT+CGG | 0.543910 | 8_2:+6404877 | None:intergenic |
| GGAAATTTGCAGTTTGTGAG+AGG | 0.545645 | 8_2:-6404752 | Msa1230400:three_prime_UTR |
| GAGATGACACAAAGCACGAT+TGG | 0.550613 | 8_2:+6408370 | None:intergenic |
| TTTCTTGGCTCTGACATGGA+AGG | 0.550712 | 8_2:-6405302 | Msa1230400:CDS |
| TGTCCACTTGGAGTAATGAC+AGG | 0.556001 | 8_2:+6405046 | None:intergenic |
| GGGAGAGGTGCCAATCCAAA+GGG | 0.557516 | 8_2:-6405652 | Msa1230400:CDS |
| TCTGCAATTCCCATGATCGT+TGG | 0.558743 | 8_2:+6405560 | None:intergenic |
| TAAAAGAATTGTGGAAGAGA+GGG | 0.558914 | 8_2:-6404474 | Msa1230400:three_prime_UTR |
| AGGAATCCGAGAATTGCAAA+AGG | 0.563665 | 8_2:-6407022 | Msa1230400:intron |
| GTGAATTTGATCCGATCACG+AGG | 0.565580 | 8_2:-6404888 | Msa1230400:CDS |
| TGGGAGAGGTGCCAATCCAA+AGG | 0.568375 | 8_2:-6405653 | Msa1230400:CDS |
| CAAAGGCAAAATACAAGGAG+TGG | 0.570372 | 8_2:-6405597 | Msa1230400:CDS |
| TTCTACAGCATAGATGATCT+GGG | 0.571200 | 8_2:+6405092 | None:intergenic |
| AGATTAACAGAATATTAAGC+TGG | 0.571582 | 8_2:-6404773 | Msa1230400:exon |
| GTTTGCAAAGGCAAAATACA+AGG | 0.573081 | 8_2:-6405602 | Msa1230400:CDS |
| AACCTCAGTGTAAGCATCGA+TGG | 0.574559 | 8_2:+6408524 | None:intergenic |
| ATCACAACTAGTATCAAACT+TGG | 0.576212 | 8_2:-6404851 | Msa1230400:CDS |
| ATGAATATTTGGACAAACAT+GGG | 0.585563 | 8_2:-6404810 | Msa1230400:CDS |
| ATATTTGGACAAACATGGGT+GGG | 0.588555 | 8_2:-6404806 | Msa1230400:CDS |
| GATTCTTGACCATCTTCAGA+AGG | 0.598500 | 8_2:-6405005 | Msa1230400:intron |
| AGACACATACAGACCTCAGT+TGG | 0.598626 | 8_2:+6405194 | None:intergenic |
| AAAGGCAAAATACAAGGAGT+GGG | 0.618207 | 8_2:-6405596 | Msa1230400:CDS |
| AATGAGGCCAAACGCTTCGG+CGG | 0.621498 | 8_2:-6408613 | Msa1230400:CDS |
| ATGAAATGTTAAGTTTCACC+AGG | 0.625530 | 8_2:+6404554 | None:intergenic |
| CAGAAACAAGAACATACGAA+AGG | 0.633885 | 8_2:-6407042 | Msa1230400:CDS |
| GATCCTGTCATTACTCCAAG+TGG | 0.647756 | 8_2:-6405049 | Msa1230400:CDS |
| AATATTTGGACAAACATGGG+TGG | 0.650582 | 8_2:-6404807 | Msa1230400:CDS |
| ACTAGTTGTGATGGATCAAG+TGG | 0.661529 | 8_2:+6404862 | None:intergenic |
| CTCAGTGTAAGCATCGATGG+CGG | 0.679330 | 8_2:+6408527 | None:intergenic |
| CGCCATCGATGCTTACACTG+AGG | 0.684093 | 8_2:-6408526 | Msa1230400:intron |
| AATATGGCAAGAGTTTGCAA+AGG | 0.692026 | 8_2:-6405614 | Msa1230400:CDS |
| TGAATTTGATCCGATCACGA+GGG | 0.713022 | 8_2:-6404887 | Msa1230400:CDS |
| AGATGATGACATACCAACTG+AGG | 0.723021 | 8_2:-6405207 | Msa1230400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTGATTTGAAATT+TGG | - | chr8_2:6404961-6404980 | Msa1230400:intron | 10.0% |
| !!! | TTTAATTTGATTTGAAATTT+GGG | - | chr8_2:6404962-6404981 | Msa1230400:intron | 10.0% |
| !!! | TATTTGATTATTTTGTAAAA+TGG | - | chr8_2:6406084-6406103 | Msa1230400:intron | 10.0% |
| !! | AATAATGAAATACTATTTAT+AGG | - | chr8_2:6406773-6406792 | Msa1230400:intron | 10.0% |
| !! | TGACATTAAAATTTAAATAA+TGG | + | chr8_2:6407450-6407469 | None:intergenic | 10.0% |
| !! | ATAGTTAATAATAAATACAA+TGG | + | chr8_2:6407785-6407804 | None:intergenic | 10.0% |
| !! | TAATGTGAATTGTAAAAAAT+TGG | + | chr8_2:6404529-6404548 | None:intergenic | 15.0% |
| !! | CTAATGTTTATATCTATTAT+GGG | + | chr8_2:6404592-6404611 | None:intergenic | 15.0% |
| !! | TCTAATGTTTATATCTATTA+TGG | + | chr8_2:6404593-6404612 | None:intergenic | 15.0% |
| !!! | TATGAAATTTGTGAATTTTT+TGG | - | chr8_2:6404917-6404936 | Msa1230400:intron | 15.0% |
| !!! | ATGAAATTTGTGAATTTTTT+GGG | - | chr8_2:6404918-6404937 | Msa1230400:intron | 15.0% |
| !! | TACAATATTAGCAAAATTAT+AGG | - | chr8_2:6406859-6406878 | Msa1230400:intron | 15.0% |
| !! | ATTATTCATTTGAAAAATGA+GGG | + | chr8_2:6407533-6407552 | None:intergenic | 15.0% |
| !!! | AATAATGATTCTTTTGTTTT+TGG | - | chr8_2:6407547-6407566 | Msa1230400:intron | 15.0% |
| !! | GTAAGTAAATATGGAAAATT+TGG | + | chr8_2:6404751-6404770 | None:intergenic | 20.0% |
| !!! | TTTTGCAATTGAAAACAAAA+GGG | + | chr8_2:6404773-6404792 | None:intergenic | 20.0% |
| !!! | TTTTTGCAATTGAAAACAAA+AGG | + | chr8_2:6404774-6404793 | None:intergenic | 20.0% |
| !! | TTCTTAAATTTATTTATGCG+TGG | - | chr8_2:6405484-6405503 | Msa1230400:intron | 20.0% |
| !! | TCTTAAATTTATTTATGCGT+GGG | - | chr8_2:6405485-6405504 | Msa1230400:intron | 20.0% |
| !! | TTGATATATCAATTGTTTGT+TGG | - | chr8_2:6406031-6406050 | Msa1230400:intron | 20.0% |
| !! | ATCAAATATAAGATGTAATG+AGG | + | chr8_2:6406072-6406091 | None:intergenic | 20.0% |
| !! | TGATATATTAAAACTGTCAT+TGG | - | chr8_2:6406575-6406594 | Msa1230400:intron | 20.0% |
| !! | GATATATTAAAACTGTCATT+GGG | - | chr8_2:6406576-6406595 | Msa1230400:intron | 20.0% |
| !! | AAAACATCGTCATAAATTAA+AGG | - | chr8_2:6406623-6406642 | Msa1230400:intron | 20.0% |
| !! | AAACATCGTCATAAATTAAA+GGG | - | chr8_2:6406624-6406643 | Msa1230400:intron | 20.0% |
| !! | GAATATATATGTACATTGTA+AGG | - | chr8_2:6406720-6406739 | Msa1230400:intron | 20.0% |
| !! | ATTATTTGAGTCATGATTTA+CGG | + | chr8_2:6406759-6406778 | None:intergenic | 20.0% |
| !! | TTAGCAAAATTATAGGATAT+TGG | - | chr8_2:6406866-6406885 | Msa1230400:intron | 20.0% |
| !! | AAAATTATAGGATATTGGTA+GGG | - | chr8_2:6406871-6406890 | Msa1230400:intron | 20.0% |
| !!! | CCTATTTAGAATTACAAAAT+AGG | + | chr8_2:6406990-6407009 | None:intergenic | 20.0% |
| !!! | CCTATTTTGTAATTCTAAAT+AGG | - | chr8_2:6406987-6407006 | Msa1230400:intron | 20.0% |
| !! | CATTATTCATTTGAAAAATG+AGG | + | chr8_2:6407534-6407553 | None:intergenic | 20.0% |
| ! | ATGGTTTATTATGTGAATGA+AGG | + | chr8_2:6404568-6404587 | None:intergenic | 25.0% |
| ! | GTTTATATCTATTATGGGTA+TGG | + | chr8_2:6404587-6404606 | None:intergenic | 25.0% |
| ! | AACAAAAGGGTAAGTAAATA+TGG | + | chr8_2:6404760-6404779 | None:intergenic | 25.0% |
| ! | TATGTATGCAATTGAAATTG+TGG | - | chr8_2:6405014-6405033 | Msa1230400:CDS | 25.0% |
| !! | TTTGGTTTATTTGTAGTGAA+TGG | - | chr8_2:6405091-6405110 | Msa1230400:CDS | 25.0% |
| ! | TTGGTTTATTTGTAGTGAAT+GGG | - | chr8_2:6405092-6405111 | Msa1230400:CDS | 25.0% |
| ! | CTTAAATTTATTTATGCGTG+GGG | - | chr8_2:6405486-6405505 | Msa1230400:intron | 25.0% |
| ! | TCAAGAATCTATTAACATCA+AGG | + | chr8_2:6405521-6405540 | None:intergenic | 25.0% |
| ! | GATCAGAATTCTTAAAATTG+TGG | + | chr8_2:6405579-6405598 | None:intergenic | 25.0% |
| !! | TATTTGATAATTGAGTTGCA+AGG | + | chr8_2:6405642-6405661 | None:intergenic | 25.0% |
| ! | AATCTTACGTAAAGAAAACA+TGG | + | chr8_2:6405681-6405700 | None:intergenic | 25.0% |
| ! | TTCTTTACGTAAGATTTAGT+TGG | - | chr8_2:6405685-6405704 | Msa1230400:intron | 25.0% |
| ! | AAGAGAATAATATTAAGTCG+AGG | + | chr8_2:6405843-6405862 | None:intergenic | 25.0% |
| ! | TCTAAACCAAACAAAACTTT+GGG | - | chr8_2:6405917-6405936 | Msa1230400:intron | 25.0% |
| ! | AAAACAAGACATACATATCT+TGG | + | chr8_2:6405962-6405981 | None:intergenic | 25.0% |
| ! | TTACTTGTTTAAGTGTTAAC+TGG | - | chr8_2:6406347-6406366 | Msa1230400:intron | 25.0% |
| ! | ACAAAGTTGTAAAATACAGA+AGG | + | chr8_2:6406406-6406425 | None:intergenic | 25.0% |
| ! | CAAAATTATAGGATATTGGT+AGG | - | chr8_2:6406870-6406889 | Msa1230400:intron | 25.0% |
| !!! | TAAAGCTTTTGGCTTAAAAT+TGG | + | chr8_2:6407120-6407139 | None:intergenic | 25.0% |
| ! | TATTTGATGAACAAAAGCTA+AGG | - | chr8_2:6407202-6407221 | Msa1230400:intron | 25.0% |
| !!! | AACAGTTTGTTTGAGAATTT+TGG | - | chr8_2:6407390-6407409 | Msa1230400:intron | 25.0% |
| !!! | TTTGTTTTTGGTCATGATTA+AGG | - | chr8_2:6407559-6407578 | Msa1230400:intron | 25.0% |
| ! | ACATAAAAATAGTTGAGATG+TGG | + | chr8_2:6407823-6407842 | None:intergenic | 25.0% |
| !!! | CATCTCAACTATTTTTATGT+TGG | - | chr8_2:6407823-6407842 | Msa1230400:intron | 25.0% |
| !! | CTAAAGGAAAAACATTTTCT+TGG | - | chr8_2:6407928-6407947 | Msa1230400:intron | 25.0% |
| ! | ATAGATTCGAGAAATAAGTA+AGG | - | chr8_2:6408088-6408107 | Msa1230400:intron | 25.0% |
| ! | TATTTATTAGTCACCCAAAT+TGG | - | chr8_2:6408112-6408131 | Msa1230400:CDS | 25.0% |
| ! | TAAATTCAACAAGCCAATTT+GGG | + | chr8_2:6408128-6408147 | None:intergenic | 25.0% |
| !! | GATTTTCATGTTTCATATTC+TGG | - | chr8_2:6408269-6408288 | Msa1230400:intron | 25.0% |
| ! | ATGAATATTTGGACAAACAT+GGG | - | chr8_2:6408435-6408454 | Msa1230400:intron | 25.0% |
| ! | AGATTAACAGAATATTAAGC+TGG | - | chr8_2:6408472-6408491 | Msa1230400:intron | 25.0% |
| !! | TGTTTAAAGTCACAACATTA+AGG | + | chr8_2:6408599-6408618 | None:intergenic | 25.0% |
| ! | AAACATATGAAGTGTACATA+TGG | - | chr8_2:6408614-6408633 | Msa1230400:CDS | 25.0% |
| AGAAGAAGAAGAAGAAGAAA+CGG | + | chr8_2:6404497-6404516 | None:intergenic | 30.0% | |
| !!! | ACATGGGTTTTTTGTTTTGT+AGG | - | chr8_2:6404816-6404835 | Msa1230400:CDS | 30.0% |
| TGAAATAAACGGGAACATTA+GGG | + | chr8_2:6404855-6404874 | None:intergenic | 30.0% | |
| !! | TTGGGTGTTTTTGATTGTTT+AGG | - | chr8_2:6404936-6404955 | Msa1230400:intron | 30.0% |
| !! | TGGGTGTTTTTGATTGTTTA+GGG | - | chr8_2:6404937-6404956 | Msa1230400:intron | 30.0% |
| !! | TTGATTTGAAATTTGGGTTG+TGG | - | chr8_2:6404968-6404987 | Msa1230400:intron | 30.0% |
| !! | TGATTTGAAATTTGGGTTGT+GGG | - | chr8_2:6404969-6404988 | Msa1230400:intron | 30.0% |
| TATGCAATTGAAATTGTGGT+TGG | - | chr8_2:6405018-6405037 | Msa1230400:CDS | 30.0% | |
| ! | TGGTTGGAATATTGAGATTT+TGG | - | chr8_2:6405034-6405053 | Msa1230400:CDS | 30.0% |
| ! | TTGGAATATTGAGATTTTGG+AGG | - | chr8_2:6405037-6405056 | Msa1230400:CDS | 30.0% |
| CAAATAAACCAAACACATTG+TGG | + | chr8_2:6405084-6405103 | None:intergenic | 30.0% | |
| GATTTAATGGCTTCATTCAT+CGG | - | chr8_2:6405230-6405249 | Msa1230400:CDS | 30.0% | |
| ACGAGAGCAATATTTATGAT+AGG | + | chr8_2:6405441-6405460 | None:intergenic | 30.0% | |
| TTCTATTGGAAAGGATCATT+TGG | - | chr8_2:6405553-6405572 | Msa1230400:CDS | 30.0% | |
| CGTAAAGAAAACATGGAAAT+AGG | + | chr8_2:6405674-6405693 | None:intergenic | 30.0% | |
| GTCTAAACCAAACAAAACTT+TGG | - | chr8_2:6405916-6405935 | Msa1230400:intron | 30.0% | |
| CTAAACCAAACAAAACTTTG+GGG | - | chr8_2:6405918-6405937 | Msa1230400:intron | 30.0% | |
| TAAACCAAACAAAACTTTGG+GGG | - | chr8_2:6405919-6405938 | Msa1230400:intron | 30.0% | |
| !!! | GTCTTGTTTTGAGTTAGTTT+TGG | - | chr8_2:6405972-6405991 | Msa1230400:intron | 30.0% |
| ! | TCTTCTTTTGCACATATTTC+AGG | - | chr8_2:6406151-6406170 | Msa1230400:intron | 30.0% |
| ! | AACAAACCTTTTGCAATTCT+CGG | + | chr8_2:6406232-6406251 | None:intergenic | 30.0% |
| !! | ATTTACACTGTTTCTGATCT+AGG | - | chr8_2:6406541-6406560 | Msa1230400:intron | 30.0% |
| ATCGTCATAAATTAAAGGGT+GGG | - | chr8_2:6406628-6406647 | Msa1230400:intron | 30.0% | |
| ATAAATTAAAGGGTGGGAAT+TGG | - | chr8_2:6406634-6406653 | Msa1230400:intron | 30.0% | |
| TAAATTAAAGGGTGGGAATT+GGG | - | chr8_2:6406635-6406654 | Msa1230400:intron | 30.0% | |
| GAATGAAGAAAAGATAGGAA+GGG | - | chr8_2:6406893-6406912 | Msa1230400:intron | 30.0% | |
| CATATCAATCCGATATTACT+GGG | + | chr8_2:6406923-6406942 | None:intergenic | 30.0% | |
| GTTATACATAATACCAACTG+AGG | - | chr8_2:6406960-6406979 | Msa1230400:intron | 30.0% | |
| ATTTCGTGTGGAAGAATAAA+GGG | + | chr8_2:6407086-6407105 | None:intergenic | 30.0% | |
| ! | GTTTGAAATTTCATTTCGTG+TGG | + | chr8_2:6407098-6407117 | None:intergenic | 30.0% |
| GAATTAGAGAGATAAAGAGA+TGG | + | chr8_2:6407166-6407185 | None:intergenic | 30.0% | |
| AATTCCTAATATTGCTTGCT+TGG | - | chr8_2:6407275-6407294 | Msa1230400:intron | 30.0% | |
| ATTCCTAATATTGCTTGCTT+GGG | - | chr8_2:6407276-6407295 | Msa1230400:intron | 30.0% | |
| TCATTTGAAAAATGAGGGTA+AGG | + | chr8_2:6407528-6407547 | None:intergenic | 30.0% | |
| GCTATATGGTTGAAGAAATA+TGG | - | chr8_2:6407615-6407634 | Msa1230400:intron | 30.0% | |
| GTAAATTCAACAAGCCAATT+TGG | + | chr8_2:6408129-6408148 | None:intergenic | 30.0% | |
| !! | AATTGGCTTGTTGAATTTAC+AGG | - | chr8_2:6408129-6408148 | Msa1230400:CDS | 30.0% |
| CATTTAACTACTCCTTTCTT+AGG | - | chr8_2:6408331-6408350 | Msa1230400:intron | 30.0% | |
| AAGTTTGATACTAGTTGTGA+TGG | + | chr8_2:6408395-6408414 | None:intergenic | 30.0% | |
| ATCACAACTAGTATCAAACT+TGG | - | chr8_2:6408394-6408413 | Msa1230400:CDS | 30.0% | |
| CATGTTTGTCCAAATATTCA+TGG | + | chr8_2:6408436-6408455 | None:intergenic | 30.0% | |
| CATGAATATTTGGACAAACA+TGG | - | chr8_2:6408434-6408453 | Msa1230400:intron | 30.0% | |
| ATGAAATGTTAAGTTTCACC+AGG | + | chr8_2:6408694-6408713 | None:intergenic | 30.0% | |
| !! | TTTATTTGACCAATTTGCTG+TGG | - | chr8_2:6408740-6408759 | Msa1230400:five_prime_UTR | 30.0% |
| TAAAAGAATTGTGGAAGAGA+GGG | - | chr8_2:6408771-6408790 | Msa1230400:five_prime_UTR | 30.0% | |
| ! | AGAAAGGTAACAACGAGTTT+TGG | + | chr8_2:6404461-6404480 | None:intergenic | 35.0% |
| TCGTTGTTACCTTTCTTCAT+CGG | - | chr8_2:6404465-6404484 | Msa1230400:three_prime_UTR | 35.0% | |
| AGCGAAGAAAAACAGAAATG+AGG | - | chr8_2:6404616-6404635 | Msa1230400:three_prime_UTR | 35.0% | |
| ACTTTGTAACGTTTCTGACA+TGG | - | chr8_2:6404799-6404818 | Msa1230400:CDS | 35.0% | |
| CTTTGTAACGTTTCTGACAT+GGG | - | chr8_2:6404800-6404819 | Msa1230400:CDS | 35.0% | |
| GTGAAATAAACGGGAACATT+AGG | + | chr8_2:6404856-6404875 | None:intergenic | 35.0% | |
| AGCACGATTGGTGAAATAAA+CGG | + | chr8_2:6404866-6404885 | None:intergenic | 35.0% | |
| !!! | ATTTGGGTTGTGGGTTTTTT+AGG | - | chr8_2:6404978-6404997 | Msa1230400:intron | 35.0% |
| !!! | TTTGGGTTGTGGGTTTTTTA+GGG | - | chr8_2:6404979-6404998 | Msa1230400:intron | 35.0% |
| AATTGTGTCCACAATGTGTT+TGG | - | chr8_2:6405073-6405092 | Msa1230400:CDS | 35.0% | |
| TTATTTGTAGTGAATGGGAG+AGG | - | chr8_2:6405097-6405116 | Msa1230400:CDS | 35.0% | |
| TATTTGTAGTGAATGGGAGA+GGG | - | chr8_2:6405098-6405117 | Msa1230400:intron | 35.0% | |
| ! | CGTGCATTTTCACGAATAAA+GGG | + | chr8_2:6405331-6405350 | None:intergenic | 35.0% |
| AATCCACGTGACTTTACATT+CGG | - | chr8_2:6405377-6405396 | Msa1230400:intron | 35.0% | |
| GATTAGGCGTAAAACAGATT+GGG | - | chr8_2:6405399-6405418 | Msa1230400:intron | 35.0% | |
| ! | GTTGAGTAGTTCTATTGGAA+AGG | - | chr8_2:6405544-6405563 | Msa1230400:intron | 35.0% |
| ! | GTAAGATTTAGTTGGTTCCT+GGG | - | chr8_2:6405693-6405712 | Msa1230400:intron | 35.0% |
| GAGAGGTTTATAGCAAACAT+AGG | + | chr8_2:6405783-6405802 | None:intergenic | 35.0% | |
| ATATTAAGTCGAGGTTTCCA+CGG | + | chr8_2:6405834-6405853 | None:intergenic | 35.0% | |
| ATTTCAGGCACACTATATGT+TGG | - | chr8_2:6406166-6406185 | Msa1230400:intron | 35.0% | |
| TTTCAGGCACACTATATGTT+GGG | - | chr8_2:6406167-6406186 | Msa1230400:intron | 35.0% | |
| CAGAAACAAGAACATACGAA+AGG | - | chr8_2:6406203-6406222 | Msa1230400:intron | 35.0% | |
| AGAAGGTCACAAACAGAAAA+GGG | + | chr8_2:6406389-6406408 | None:intergenic | 35.0% | |
| TGTCCTGCAACATTTATCAA+TGG | + | chr8_2:6406430-6406449 | None:intergenic | 35.0% | |
| CATCGTCATAAATTAAAGGG+TGG | - | chr8_2:6406627-6406646 | Msa1230400:intron | 35.0% | |
| GTAGGGAATGAAGAAAAGAT+AGG | - | chr8_2:6406888-6406907 | Msa1230400:intron | 35.0% | |
| GGAATGAAGAAAAGATAGGA+AGG | - | chr8_2:6406892-6406911 | Msa1230400:intron | 35.0% | |
| CCATATCAATCCGATATTAC+TGG | + | chr8_2:6406924-6406943 | None:intergenic | 35.0% | |
| CCAGTAATATCGGATTGATA+TGG | - | chr8_2:6406921-6406940 | Msa1230400:intron | 35.0% | |
| AATATCGGATTGATATGGTG+TGG | - | chr8_2:6406926-6406945 | Msa1230400:intron | 35.0% | |
| GTGTATGAATTATTGGGCTA+GGG | + | chr8_2:6407044-6407063 | None:intergenic | 35.0% | |
| AGTGTATGAATTATTGGGCT+AGG | + | chr8_2:6407045-6407064 | None:intergenic | 35.0% | |
| AGCCCAATAATTCATACACT+CGG | - | chr8_2:6407045-6407064 | Msa1230400:CDS | 35.0% | |
| TGCCGAGTGTATGAATTATT+GGG | + | chr8_2:6407050-6407069 | None:intergenic | 35.0% | |
| TGGAAGAATAAAGGGGATTA+GGG | + | chr8_2:6407078-6407097 | None:intergenic | 35.0% | |
| TTTCGTGTGGAAGAATAAAG+GGG | + | chr8_2:6407085-6407104 | None:intergenic | 35.0% | |
| CATTTCGTGTGGAAGAATAA+AGG | + | chr8_2:6407087-6407106 | None:intergenic | 35.0% | |
| TAAGCCAAAAGCTTTACCTT+AGG | - | chr8_2:6407124-6407143 | Msa1230400:intron | 35.0% | |
| AAGCCAAAAGCTTTACCTTA+GGG | - | chr8_2:6407125-6407144 | Msa1230400:intron | 35.0% | |
| CATCCATGTATATTACGTGA+GGG | - | chr8_2:6407228-6407247 | Msa1230400:intron | 35.0% | |
| TTTGGTCATGATTAAGGCTT+TGG | - | chr8_2:6407565-6407584 | Msa1230400:intron | 35.0% | |
| !! | ATGATTAAGGCTTTGGATCT+TGG | - | chr8_2:6407572-6407591 | Msa1230400:intron | 35.0% |
| !! | TGATTAAGGCTTTGGATCTT+GGG | - | chr8_2:6407573-6407592 | Msa1230400:intron | 35.0% |
| AATATGGCAAGAGTTTGCAA+AGG | - | chr8_2:6407631-6407650 | Msa1230400:intron | 35.0% | |
| GTTTGCAAAGGCAAAATACA+AGG | - | chr8_2:6407643-6407662 | Msa1230400:intron | 35.0% | |
| AAAGGCAAAATACAAGGAGT+GGG | - | chr8_2:6407649-6407668 | Msa1230400:intron | 35.0% | |
| AAAAATAGTTGAGATGTGGC+TGG | + | chr8_2:6407819-6407838 | None:intergenic | 35.0% | |
| ! | TACTTCCCATTTGAAACAGT+TGG | - | chr8_2:6407984-6408003 | Msa1230400:intron | 35.0% |
| TTCTACAGCATAGATGATCT+GGG | + | chr8_2:6408156-6408175 | None:intergenic | 35.0% | |
| ATTCTACAGCATAGATGATC+TGG | + | chr8_2:6408157-6408176 | None:intergenic | 35.0% | |
| ! | ATCACATTACCTTCTGAAGA+TGG | + | chr8_2:6408252-6408271 | None:intergenic | 35.0% |
| !! | ATGTTTTTCGATATCGATCG+AGG | - | chr8_2:6408297-6408316 | Msa1230400:intron | 35.0% |
| TAACTACTCCTTTCTTAGGT+TGG | - | chr8_2:6408335-6408354 | Msa1230400:intron | 35.0% | |
| CAAATTCACCAACCTAAGAA+AGG | + | chr8_2:6408346-6408365 | None:intergenic | 35.0% | |
| TAGTATCAAACTTGGCCATT+AGG | - | chr8_2:6408402-6408421 | Msa1230400:CDS | 35.0% | |
| AGTATCAAACTTGGCCATTA+GGG | - | chr8_2:6408403-6408422 | Msa1230400:CDS | 35.0% | |
| AATATTTGGACAAACATGGG+TGG | - | chr8_2:6408438-6408457 | Msa1230400:intron | 35.0% | |
| ATATTTGGACAAACATGGGT+GGG | - | chr8_2:6408439-6408458 | Msa1230400:intron | 35.0% | |
| TGTGTATACATTTAAGTGCC+TGG | - | chr8_2:6408673-6408692 | Msa1230400:five_prime_UTR | 35.0% | |
| GTTCCTTCCTAAAAGAATTG+TGG | - | chr8_2:6408762-6408781 | Msa1230400:five_prime_UTR | 35.0% | |
| !! | CTTCCACAATTCTTTTAGGA+AGG | + | chr8_2:6408768-6408787 | None:intergenic | 35.0% |
| ! | CTCTCTTCCACAATTCTTTT+AGG | + | chr8_2:6408772-6408791 | None:intergenic | 35.0% |
| CTAAAAGAATTGTGGAAGAG+AGG | - | chr8_2:6408770-6408789 | Msa1230400:five_prime_UTR | 35.0% | |
| ATAAGATGAGAGATAGAGGT+AGG | + | chr8_2:6408805-6408824 | None:intergenic | 35.0% | |
| GCACGATTGGTGAAATAAAC+GGG | + | chr8_2:6404865-6404884 | None:intergenic | 40.0% | |
| ! | TTCTAGAAGAGCAATTCAGC+TGG | - | chr8_2:6405131-6405150 | Msa1230400:intron | 40.0% |
| ! | GCGTGCATTTTCACGAATAA+AGG | + | chr8_2:6405332-6405351 | None:intergenic | 40.0% |
| AATCCGAATGTAAAGTCACG+TGG | + | chr8_2:6405383-6405402 | None:intergenic | 40.0% | |
| CGTGACTTTACATTCGGATT+AGG | - | chr8_2:6405383-6405402 | Msa1230400:intron | 40.0% | |
| GGATTAGGCGTAAAACAGAT+TGG | - | chr8_2:6405398-6405417 | Msa1230400:intron | 40.0% | |
| GCGTAAAACAGATTGGGTAT+TGG | - | chr8_2:6405405-6405424 | Msa1230400:intron | 40.0% | |
| ! | GAGACGTTGAGTAGTTCTAT+TGG | - | chr8_2:6405539-6405558 | Msa1230400:intron | 40.0% |
| ! | CGTAAGATTTAGTTGGTTCC+TGG | - | chr8_2:6405692-6405711 | Msa1230400:intron | 40.0% |
| AAACCTCTCAGATGATGTAC+AGG | - | chr8_2:6405794-6405813 | Msa1230400:intron | 40.0% | |
| !!! | AGATCCCCCAAAGTTTTGTT+TGG | + | chr8_2:6405926-6405945 | None:intergenic | 40.0% |
| TGTGCAAAAGAAGATTCAGC+TGG | + | chr8_2:6406145-6406164 | None:intergenic | 40.0% | |
| AGGAATCCGAGAATTGCAAA+AGG | - | chr8_2:6406223-6406242 | Msa1230400:intron | 40.0% | |
| AAACACCCTTGTCTGTTTCA+TGG | - | chr8_2:6406258-6406277 | Msa1230400:intron | 40.0% | |
| GATGTCCATGAAACAGACAA+GGG | + | chr8_2:6406266-6406285 | None:intergenic | 40.0% | |
| TGATGTCCATGAAACAGACA+AGG | + | chr8_2:6406267-6406286 | None:intergenic | 40.0% | |
| CAGAAGGTCACAAACAGAAA+AGG | + | chr8_2:6406390-6406409 | None:intergenic | 40.0% | |
| ! | GTGCCATTGATAAATGTTGC+AGG | - | chr8_2:6406424-6406443 | Msa1230400:intron | 40.0% |
| ! | GGAAGGAAGCATAAAATGTG+GGG | + | chr8_2:6406490-6406509 | None:intergenic | 40.0% |
| ! | GGGAAGGAAGCATAAAATGT+GGG | + | chr8_2:6406491-6406510 | None:intergenic | 40.0% |
| ! | ATTTTATGCTTCCTTCCCCT+GGG | - | chr8_2:6406493-6406512 | Msa1230400:intron | 40.0% |
| ATAAACCACATCCAATCCCA+GGG | + | chr8_2:6406512-6406531 | None:intergenic | 40.0% | |
| AATAAACCACATCCAATCCC+AGG | + | chr8_2:6406513-6406532 | None:intergenic | 40.0% | |
| CATGTAGCAAATGATGCAAC+AGG | + | chr8_2:6406828-6406847 | None:intergenic | 40.0% | |
| AAGGGACATCCCAGTAATAT+CGG | - | chr8_2:6406911-6406930 | Msa1230400:intron | 40.0% | |
| GATTGATATGGTGTGGTGAA+TGG | - | chr8_2:6406933-6406952 | Msa1230400:intron | 40.0% | |
| CAAAATAGGTCATCCTCAGT+TGG | + | chr8_2:6406976-6406995 | None:intergenic | 40.0% | |
| CTGCCGAGTGTATGAATTAT+TGG | + | chr8_2:6407051-6407070 | None:intergenic | 40.0% | |
| GGAAGAATAAAGGGGATTAG+GGG | + | chr8_2:6407077-6407096 | None:intergenic | 40.0% | |
| GTGGAAGAATAAAGGGGATT+AGG | + | chr8_2:6407079-6407098 | None:intergenic | 40.0% | |
| ! | ACACCCTAAGGTAAAGCTTT+TGG | + | chr8_2:6407131-6407150 | None:intergenic | 40.0% |
| GCATCCATGTATATTACGTG+AGG | - | chr8_2:6407227-6407246 | Msa1230400:intron | 40.0% | |
| CATCCCTCACGTAATATACA+TGG | + | chr8_2:6407234-6407253 | None:intergenic | 40.0% | |
| CATGTATATTACGTGAGGGA+TGG | - | chr8_2:6407232-6407251 | Msa1230400:intron | 40.0% | |
| ATATTACGTGAGGGATGGTT+TGG | - | chr8_2:6407237-6407256 | Msa1230400:intron | 40.0% | |
| GAACCCAAGCAAGCAATATT+AGG | + | chr8_2:6407282-6407301 | None:intergenic | 40.0% | |
| !!! | ATTCCTGCTGATTTTCAGTG+TGG | - | chr8_2:6407488-6407507 | Msa1230400:intron | 40.0% |
| AACCATATAGCCCTTTGGAT+TGG | + | chr8_2:6407606-6407625 | None:intergenic | 40.0% | |
| TCTTCAACCATATAGCCCTT+TGG | + | chr8_2:6407611-6407630 | None:intergenic | 40.0% | |
| CAAAGGCAAAATACAAGGAG+TGG | - | chr8_2:6407648-6407667 | Msa1230400:intron | 40.0% | |
| AGCTTGTAAGTCTGCTCTAA+AGG | - | chr8_2:6407912-6407931 | Msa1230400:intron | 40.0% | |
| !!! | ACATTTTCTTGGCTCTGACA+TGG | - | chr8_2:6407939-6407958 | Msa1230400:intron | 40.0% |
| ! | TTCCCATTTGAAACAGTTGG+AGG | - | chr8_2:6407987-6408006 | Msa1230400:intron | 40.0% |
| AGCCTCCAACTGTTTCAAAT+GGG | + | chr8_2:6407992-6408011 | None:intergenic | 40.0% | |
| AGATGATGACATACCAACTG+AGG | - | chr8_2:6408038-6408057 | Msa1230400:intron | 40.0% | |
| CTCTCATATGTATGTCCACT+TGG | + | chr8_2:6408214-6408233 | None:intergenic | 40.0% | |
| GATTCTTGACCATCTTCAGA+AGG | - | chr8_2:6408240-6408259 | Msa1230400:intron | 40.0% | |
| TGAATTTGATCCGATCACGA+GGG | - | chr8_2:6408358-6408377 | Msa1230400:intron | 40.0% | |
| !! | ACTAGTTGTGATGGATCAAG+TGG | + | chr8_2:6408386-6408405 | None:intergenic | 40.0% |
| GGAAGCAGTCCATGAATATT+TGG | - | chr8_2:6408424-6408443 | Msa1230400:intron | 40.0% | |
| GGAAATTTGCAGTTTGTGAG+AGG | - | chr8_2:6408493-6408512 | Msa1230400:intron | 40.0% | |
| GATGATGTGTTGTGCAAGAT+TGG | - | chr8_2:6408547-6408566 | Msa1230400:CDS | 40.0% | |
| GGAGATAAGATGAGAGATAG+AGG | + | chr8_2:6408809-6408828 | None:intergenic | 40.0% | |
| AGAAATGAGGCCAAACGCTT+CGG | - | chr8_2:6404629-6404648 | Msa1230400:three_prime_UTR | 45.0% | |
| ! | CATCGATGGCGGCATTAAAA+CGG | + | chr8_2:6404710-6404729 | None:intergenic | 45.0% |
| !! | AACCTCAGTGTAAGCATCGA+TGG | + | chr8_2:6404724-6404743 | None:intergenic | 45.0% |
| GAGATGACACAAAGCACGAT+TGG | + | chr8_2:6404878-6404897 | None:intergenic | 45.0% | |
| GCTGGACAGTCATTCTGTTA+AGG | - | chr8_2:6405149-6405168 | Msa1230400:intron | 45.0% | |
| ! | CTCGCTCGTGGTTGATTTAA+TGG | - | chr8_2:6405217-6405236 | Msa1230400:CDS | 45.0% |
| CTGATCATTGCAGATCTCTG+AGG | - | chr8_2:6405593-6405612 | Msa1230400:CDS | 45.0% | |
| ! | ATTGCAGATCTCTGAGGAGT+TGG | - | chr8_2:6405599-6405618 | Msa1230400:CDS | 45.0% |
| ACACCTGTACATCATCTGAG+AGG | + | chr8_2:6405800-6405819 | None:intergenic | 45.0% | |
| AGGTTTCCACGGAGATTGTT+CGG | + | chr8_2:6405823-6405842 | None:intergenic | 45.0% | |
| ! | GGGGAAGGAAGCATAAAATG+TGG | + | chr8_2:6406492-6406511 | None:intergenic | 45.0% |
| ! | CATTTTATGCTTCCTTCCCC+TGG | - | chr8_2:6406492-6406511 | Msa1230400:intron | 45.0% |
| TAAACCACATCCAATCCCAG+GGG | + | chr8_2:6406511-6406530 | None:intergenic | 45.0% | |
| AAGCTTTACCTTAGGGTGTG+TGG | - | chr8_2:6407132-6407151 | Msa1230400:intron | 45.0% | |
| !! | CTTGCTATTGAGCTGTCAAC+AGG | - | chr8_2:6407413-6407432 | Msa1230400:intron | 45.0% |
| ATTGAGCTGTCAACAGGACA+TGG | - | chr8_2:6407419-6407438 | Msa1230400:intron | 45.0% | |
| TGCCAATCCAAAGGGCTATA+TGG | - | chr8_2:6407601-6407620 | Msa1230400:intron | 45.0% | |
| TTCATCGTCCCAACGATCAT+GGG | - | chr8_2:6407676-6407695 | Msa1230400:intron | 45.0% | |
| CTGCAATTCCCATGATCGTT+GGG | + | chr8_2:6407687-6407706 | None:intergenic | 45.0% | |
| TCTGCAATTCCCATGATCGT+TGG | + | chr8_2:6407688-6407707 | None:intergenic | 45.0% | |
| !! | TTTCTTGGCTCTGACATGGA+AGG | - | chr8_2:6407943-6407962 | Msa1230400:intron | 45.0% |
| CAGCCTCCAACTGTTTCAAA+TGG | + | chr8_2:6407993-6408012 | None:intergenic | 45.0% | |
| AGACACATACAGACCTCAGT+TGG | + | chr8_2:6408054-6408073 | None:intergenic | 45.0% | |
| GATCCTGTCATTACTCCAAG+TGG | - | chr8_2:6408196-6408215 | Msa1230400:intron | 45.0% | |
| TGTCCACTTGGAGTAATGAC+AGG | + | chr8_2:6408202-6408221 | None:intergenic | 45.0% | |
| GTGAATTTGATCCGATCACG+AGG | - | chr8_2:6408357-6408376 | Msa1230400:intron | 45.0% | |
| ! | TTCATGGACTGCTTCCCTAA+TGG | + | chr8_2:6408420-6408439 | None:intergenic | 45.0% |
| AGGAAGGAACCACAGCAAAT+TGG | + | chr8_2:6408752-6408771 | None:intergenic | 45.0% | |
| !! | CGGAGAGTACCGATGAAGAA+AGG | + | chr8_2:6404477-6404496 | None:intergenic | 50.0% |
| ACCGTCGTTTCGCAAAAGCT+CGG | + | chr8_2:6404667-6404686 | None:intergenic | 50.0% | |
| !! | CTCAGTGTAAGCATCGATGG+CGG | + | chr8_2:6404721-6404740 | None:intergenic | 50.0% |
| TAGTGAATGGGAGAGGGTTG+AGG | - | chr8_2:6405104-6405123 | Msa1230400:intron | 50.0% | |
| TCAACCACGAGCGAGACAAA+AGG | + | chr8_2:6405212-6405231 | None:intergenic | 50.0% | |
| !! | AAAAGCGTCCACACACCCTA+AGG | + | chr8_2:6407143-6407162 | None:intergenic | 50.0% |
| GCACCACACTGAAAATCAGC+AGG | + | chr8_2:6407494-6407513 | None:intergenic | 50.0% | |
| !! | AAGGCTTTGGATCTTGGGAG+AGG | - | chr8_2:6407578-6407597 | Msa1230400:intron | 50.0% |
| GTTCATCGTCCCAACGATCA+TGG | - | chr8_2:6407675-6407694 | Msa1230400:intron | 50.0% | |
| TCAAGTGGTTCCCTCGTGAT+CGG | + | chr8_2:6408371-6408390 | None:intergenic | 50.0% | |
| AATGAGGCCAAACGCTTCGG+CGG | - | chr8_2:6404632-6404651 | Msa1230400:three_prime_UTR | 55.0% | |
| ! | GCCGAGCTTTTGCGAAACGA+CGG | - | chr8_2:6404663-6404682 | Msa1230400:three_prime_UTR | 55.0% |
| CGCCATCGATGCTTACACTG+AGG | - | chr8_2:6404719-6404738 | Msa1230400:three_prime_UTR | 55.0% | |
| ! | TCCTCCTTTTGTCTCGCTCG+TGG | - | chr8_2:6405205-6405224 | Msa1230400:intron | 55.0% |
| ACCACGAGCGAGACAAAAGG+AGG | + | chr8_2:6405209-6405228 | None:intergenic | 55.0% | |
| ! | TGCACGCGCGATGCACATTT+TGG | - | chr8_2:6405345-6405364 | Msa1230400:intron | 55.0% |
| ! | GCACGCGCGATGCACATTTT+GGG | - | chr8_2:6405346-6405365 | Msa1230400:intron | 55.0% |
| TGGTTCCTGGGCTGCGTTAA+AGG | - | chr8_2:6405705-6405724 | Msa1230400:intron | 55.0% | |
| GGTTCCTGGGCTGCGTTAAA+GGG | - | chr8_2:6405706-6405725 | Msa1230400:intron | 55.0% | |
| GTTCCTGGGCTGCGTTAAAG+GGG | - | chr8_2:6405707-6405726 | Msa1230400:intron | 55.0% | |
| TTCCTGGGCTGCGTTAAAGG+GGG | - | chr8_2:6405708-6405727 | Msa1230400:intron | 55.0% | |
| AGGTGTCCGAACAATCTCCG+TGG | - | chr8_2:6405814-6405833 | Msa1230400:intron | 55.0% | |
| ATGCTTCCTTCCCCTGGGAT+TGG | - | chr8_2:6406498-6406517 | Msa1230400:intron | 55.0% | |
| !! | TGGGAGAGGTGCCAATCCAA+AGG | - | chr8_2:6407592-6407611 | Msa1230400:intron | 55.0% |
| !! | GGGAGAGGTGCCAATCCAAA+GGG | - | chr8_2:6407593-6407612 | Msa1230400:intron | 55.0% |
| ! | TGTCTCACCGCCGAAGCGTT+TGG | + | chr8_2:6404642-6404661 | None:intergenic | 60.0% |
| AACCCCCTTTAACGCAGCCC+AGG | + | chr8_2:6405713-6405732 | None:intergenic | 60.0% | |
| CCACATCCAATCCCAGGGGA+AGG | + | chr8_2:6406507-6406526 | None:intergenic | 60.0% | |
| CCTTCCCCTGGGATTGGATG+TGG | - | chr8_2:6406504-6406523 | Msa1230400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 6404423 | 6408844 | 6404423 | ID=Msa1230400;Name=Msa1230400 |
| chr8_2 | mRNA | 6404423 | 6408844 | 6404423 | ID=Msa1230400-mRNA-1;Parent=Msa1230400;Name=Msa1230400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=210|1|1|1|1|1|8|366|277 |
| chr8_2 | exon | 6404423 | 6404914 | 6404423 | ID=Msa1230400-mRNA-1:exon:2410;Parent=Msa1230400-mRNA-1 |
| chr8_2 | exon | 6405006 | 6405116 | 6405006 | ID=Msa1230400-mRNA-1:exon:2409;Parent=Msa1230400-mRNA-1 |
| chr8_2 | exon | 6405208 | 6405358 | 6405208 | ID=Msa1230400-mRNA-1:exon:2408;Parent=Msa1230400-mRNA-1 |
| chr8_2 | exon | 6405553 | 6405686 | 6405553 | ID=Msa1230400-mRNA-1:exon:2407;Parent=Msa1230400-mRNA-1 |
| chr8_2 | exon | 6407023 | 6407094 | 6407023 | ID=Msa1230400-mRNA-1:exon:2406;Parent=Msa1230400-mRNA-1 |
| chr8_2 | exon | 6408097 | 6408160 | 6408097 | ID=Msa1230400-mRNA-1:exon:2405;Parent=Msa1230400-mRNA-1 |
| chr8_2 | exon | 6408362 | 6408429 | 6408362 | ID=Msa1230400-mRNA-1:exon:2404;Parent=Msa1230400-mRNA-1 |
| chr8_2 | exon | 6408527 | 6408844 | 6408527 | ID=Msa1230400-mRNA-1:exon:2403;Parent=Msa1230400-mRNA-1 |
| chr8_2 | five_prime_UTR | 6408635 | 6408844 | 6408635 | ID=Msa1230400-mRNA-1:five_prime_utr;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6408527 | 6408634 | 6408527 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6408362 | 6408429 | 6408362 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6408097 | 6408160 | 6408097 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6407023 | 6407094 | 6407023 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6405553 | 6405686 | 6405553 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6405208 | 6405358 | 6405208 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6405006 | 6405116 | 6405006 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | CDS | 6404789 | 6404914 | 6404789 | ID=Msa1230400-mRNA-1:cds;Parent=Msa1230400-mRNA-1 |
| chr8_2 | three_prime_UTR | 6404423 | 6404788 | 6404423 | ID=Msa1230400-mRNA-1:three_prime_utr;Parent=Msa1230400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
