Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311270 | XP_003626893.1 | 95.804 | 286 | 3 | 1 | 1 | 286 | 1 | 277 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311270 | sp|Q9SRS9|CHIP_ARATH | 64.643 | 280 | 89 | 2 | 7 | 285 | 6 | 276 | 1.78e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311270 | G7LEE6 | 95.804 | 286 | 3 | 1 | 1 | 286 | 1 | 277 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044540 | Msa1311270 | -0.805146 | 1.536783e-49 | -8.615850e-47 |
| Msa0091250 | Msa1311270 | -0.803899 | 2.796665e-49 | -8.615850e-47 |
| Msa0109590 | Msa1311270 | 0.805570 | 1.252426e-49 | -8.615850e-47 |
| Msa0620620 | Msa1311270 | 0.833315 | 5.721556e-56 | -8.615850e-47 |
| Msa0715410 | Msa1311270 | 0.822075 | 2.875754e-53 | -8.615850e-47 |
| Msa0741070 | Msa1311270 | 0.818563 | 1.836124e-52 | -8.615850e-47 |
| Msa0793140 | Msa1311270 | -0.809588 | 1.756775e-50 | -8.615850e-47 |
| Msa0821190 | Msa1311270 | 0.813077 | 3.072564e-51 | -8.615850e-47 |
| Msa0826760 | Msa1311270 | 0.835059 | 2.092034e-56 | -8.615850e-47 |
| Msa0197660 | Msa1311270 | 0.816518 | 5.307068e-52 | -8.615850e-47 |
| Msa1230400 | Msa1311270 | 0.888656 | 4.865114e-73 | -8.615850e-47 |
| Msa1311270 | Msa1382790 | 0.819902 | 9.099621e-53 | -8.615850e-47 |
| Msa0428050 | Msa1311270 | 0.807678 | 4.494233e-50 | -8.615850e-47 |
| Msa0468320 | Msa1311270 | 0.811184 | 7.948695e-51 | -8.615850e-47 |
| Msa1080640 | Msa1311270 | 0.800341 | 1.508229e-48 | -8.615850e-47 |
| Msa0239800 | Msa1311270 | 0.820647 | 6.142331e-53 | -8.615850e-47 |
| Msa0307310 | Msa1311270 | 0.815796 | 7.693424e-52 | -8.615850e-47 |
| Msa0317510 | Msa1311270 | 0.823516 | 1.327880e-53 | -8.615850e-47 |
| Msa1182150 | Msa1311270 | 0.890481 | 9.476259e-74 | -8.615850e-47 |
| Msa1206310 | Msa1311270 | 0.814864 | 1.239920e-51 | -8.615850e-47 |
| Msa1206360 | Msa1311270 | 0.823600 | 1.269409e-53 | -8.615850e-47 |
| Msa0485490 | Msa1311270 | 0.803482 | 3.413203e-49 | -8.615850e-47 |
| Msa0541040 | Msa1311270 | 0.818250 | 2.162489e-52 | -8.615850e-47 |
| Msa0549590 | Msa1311270 | 0.810550 | 1.089988e-50 | -8.615850e-47 |
| Msa0597000 | Msa1311270 | 0.804935 | 1.700929e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311270 | MtrunA17_Chr8g0338781 | 95.804 | 286 | 3 | 1 | 1 | 286 | 1 | 277 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311270 | AT3G07370.1 | 64.643 | 280 | 89 | 2 | 7 | 285 | 6 | 276 | 1.81e-130 | 372 |
Find 92 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATGTTTATATCTATTA+TGG | 0.122290 | 8_4:+7984015 | None:intergenic |
| GTGAAATAAACGGGAACATT+AGG | 0.241807 | 8_4:+7983752 | None:intergenic |
| GGAAGCAGTCCATGAATATT+TGG | 0.256879 | 8_4:-7980152 | Msa1311270:CDS |
| ATGATTAAGGCTTTGGATCT+TGG | 0.294525 | 8_4:-7981004 | Msa1311270:intron |
| TAGTATCAAACTTGGCCATT+AGG | 0.302713 | 8_4:-7980174 | Msa1311270:CDS |
| GCTATATGGTTGAAGAAATA+TGG | 0.307159 | 8_4:-7980961 | Msa1311270:CDS |
| CATGTTTGTCCAAATATTCA+TGG | 0.335834 | 8_4:+7980143 | None:intergenic |
| TGTTTAAAGTCACAACATTA+AGG | 0.340045 | 8_4:+7979980 | None:intergenic |
| AGTATCAAACTTGGCCATTA+GGG | 0.343618 | 8_4:-7980173 | Msa1311270:CDS |
| AGAAAGGTAACAACGAGTTT+TGG | 0.354531 | 8_4:+7984150 | None:intergenic |
| CTAATGTTTATATCTATTAT+GGG | 0.365363 | 8_4:+7984016 | None:intergenic |
| TGATTAAGGCTTTGGATCTT+GGG | 0.370465 | 8_4:-7981003 | Msa1311270:intron |
| ATTCTACAGCATAGATGATC+TGG | 0.375119 | 8_4:+7980422 | None:intergenic |
| TGTCTCACCGCCGAAGCGTT+TGG | 0.375818 | 8_4:+7983966 | None:intergenic |
| TGCCAATCCAAAGGGCTATA+TGG | 0.378410 | 8_4:-7980975 | Msa1311270:CDS |
| AAACATATGAAGTGTACATA+TGG | 0.398153 | 8_4:-7979962 | Msa1311270:three_prime_UTR |
| AGGAAGGAACCACAGCAAAT+TGG | 0.398578 | 8_4:+7979827 | None:intergenic |
| GCTGGACAGTCATTCTGTTA+AGG | 0.400835 | 8_4:-7983456 | Msa1311270:intron |
| TGAAATAAACGGGAACATTA+GGG | 0.405625 | 8_4:+7983753 | None:intergenic |
| GTTTATATCTATTATGGGTA+TGG | 0.406386 | 8_4:+7984021 | None:intergenic |
| AGCACGATTGGTGAAATAAA+CGG | 0.411396 | 8_4:+7983742 | None:intergenic |
| TAGTGAATGGGAGAGGGTTG+AGG | 0.418045 | 8_4:-7983501 | Msa1311270:CDS |
| CAGCCTCCAACTGTTTCAAA+TGG | 0.427517 | 8_4:+7980586 | None:intergenic |
| TACTTCCCATTTGAAACAGT+TGG | 0.428647 | 8_4:-7980592 | Msa1311270:CDS |
| CTCTCATATGTATGTCCACT+TGG | 0.429519 | 8_4:+7980365 | None:intergenic |
| TTCATGGACTGCTTCCCTAA+TGG | 0.443363 | 8_4:+7980159 | None:intergenic |
| TCTTCAACCATATAGCCCTT+TGG | 0.445205 | 8_4:+7980968 | None:intergenic |
| CTGCAATTCCCATGATCGTT+GGG | 0.452825 | 8_4:+7980892 | None:intergenic |
| CATCGATGGCGGCATTAAAA+CGG | 0.453965 | 8_4:+7983898 | None:intergenic |
| GTTCATCGTCCCAACGATCA+TGG | 0.454029 | 8_4:-7980901 | Msa1311270:CDS |
| CTAAAAGAATTGTGGAAGAG+AGG | 0.456100 | 8_4:-7979806 | Msa1311270:three_prime_UTR |
| GGAGATAAGATGAGAGATAG+AGG | 0.463250 | 8_4:+7979770 | None:intergenic |
| TTATTTGTAGTGAATGGGAG+AGG | 0.470473 | 8_4:-7983508 | Msa1311270:intron |
| TTTCAGGCACACTATATGTT+GGG | 0.471344 | 8_4:-7982407 | Msa1311270:CDS |
| GCACGATTGGTGAAATAAAC+GGG | 0.471720 | 8_4:+7983743 | None:intergenic |
| ATGGTTTATTATGTGAATGA+AGG | 0.472257 | 8_4:+7984040 | None:intergenic |
| TTGGTTTATTTGTAGTGAAT+GGG | 0.476814 | 8_4:-7983513 | Msa1311270:intron |
| AACCATATAGCCCTTTGGAT+TGG | 0.479080 | 8_4:+7980973 | None:intergenic |
| ATTTCAGGCACACTATATGT+TGG | 0.479123 | 8_4:-7982408 | Msa1311270:CDS |
| AGCTTGTAAGTCTGCTCTAA+AGG | 0.479880 | 8_4:-7980664 | Msa1311270:CDS |
| GATGATGTGTTGTGCAAGAT+TGG | 0.481726 | 8_4:-7980029 | Msa1311270:three_prime_UTR |
| ATAAGATGAGAGATAGAGGT+AGG | 0.481736 | 8_4:+7979774 | None:intergenic |
| AGAAATGAGGCCAAACGCTT+CGG | 0.490570 | 8_4:-7983976 | Msa1311270:exon |
| TGTGTATACATTTAAGTGCC+TGG | 0.498036 | 8_4:-7979903 | Msa1311270:three_prime_UTR |
| ATCACATTACCTTCTGAAGA+TGG | 0.509877 | 8_4:+7980327 | None:intergenic |
| TTCCCATTTGAAACAGTTGG+AGG | 0.511106 | 8_4:-7980589 | Msa1311270:CDS |
| GTTCCTTCCTAAAAGAATTG+TGG | 0.514532 | 8_4:-7979814 | Msa1311270:three_prime_UTR |
| CATGAATATTTGGACAAACA+TGG | 0.516494 | 8_4:-7980142 | Msa1311270:CDS |
| TTTCTTGGCTCTGAAATGGA+AGG | 0.516542 | 8_4:-7980633 | Msa1311270:CDS |
| ACCGTCGTTTCGCAAAAGCT+CGG | 0.522294 | 8_4:+7983941 | None:intergenic |
| TTCTAGAAGAGCAATTCAGC+TGG | 0.523922 | 8_4:-7983474 | Msa1311270:CDS |
| CGGAGAGTACCGATGAAGAA+AGG | 0.524164 | 8_4:+7984134 | None:intergenic |
| TCCTCAATTTGAATCATCAA+AGG | 0.524893 | 8_4:+7979749 | None:intergenic |
| AAGTTTGATACTAGTTGTGA+TGG | 0.528930 | 8_4:+7980184 | None:intergenic |
| AGCCTCCAACTGTTTCAAAT+GGG | 0.534587 | 8_4:+7980587 | None:intergenic |
| AAGGCTTTGGATCTTGGGAG+AGG | 0.536466 | 8_4:-7980998 | Msa1311270:CDS |
| TCGTTGTTACCTTTCTTCAT+CGG | 0.536813 | 8_4:-7984143 | Msa1311270:five_prime_UTR |
| TTCATCGTCCCAACGATCAT+GGG | 0.536937 | 8_4:-7980900 | Msa1311270:CDS |
| TTTATTTGACCAATTTGCTG+TGG | 0.538465 | 8_4:-7979836 | Msa1311270:three_prime_UTR |
| TATTTGTAGTGAATGGGAGA+GGG | 0.542095 | 8_4:-7983507 | Msa1311270:intron |
| TCAAGTGGTTCCCTCGTGAT+CGG | 0.543910 | 8_4:+7980208 | None:intergenic |
| GGAAATTTGCAGTTTGTGAG+AGG | 0.545645 | 8_4:-7980083 | Msa1311270:three_prime_UTR |
| GAGATGACACAAAGCACGAT+TGG | 0.550613 | 8_4:+7983730 | None:intergenic |
| TGTCCACTTGGAGTAATGAC+AGG | 0.556001 | 8_4:+7980377 | None:intergenic |
| GGGAGAGGTGCCAATCCAAA+GGG | 0.557516 | 8_4:-7980983 | Msa1311270:CDS |
| TCTGCAATTCCCATGATCGT+TGG | 0.558743 | 8_4:+7980891 | None:intergenic |
| TAAAAGAATTGTGGAAGAGA+GGG | 0.558914 | 8_4:-7979805 | Msa1311270:three_prime_UTR |
| AGGAATCCGAGAATTGCAAA+AGG | 0.563665 | 8_4:-7982351 | Msa1311270:intron |
| GTGAATTTGATCCGATCACG+AGG | 0.565580 | 8_4:-7980219 | Msa1311270:CDS |
| TGGGAGAGGTGCCAATCCAA+AGG | 0.568375 | 8_4:-7980984 | Msa1311270:CDS |
| CAAAGGCAAAATACAAGGAG+TGG | 0.570372 | 8_4:-7980928 | Msa1311270:CDS |
| TTCTACAGCATAGATGATCT+GGG | 0.571200 | 8_4:+7980423 | None:intergenic |
| AGATTAACAGAATATTAAGC+TGG | 0.571582 | 8_4:-7980104 | Msa1311270:exon |
| GTTTGCAAAGGCAAAATACA+AGG | 0.573081 | 8_4:-7980933 | Msa1311270:CDS |
| AACCTCAGTGTAAGCATCGA+TGG | 0.574559 | 8_4:+7983884 | None:intergenic |
| ATCACAACTAGTATCAAACT+TGG | 0.576212 | 8_4:-7980182 | Msa1311270:CDS |
| ATGAATATTTGGACAAACAT+GGG | 0.585563 | 8_4:-7980141 | Msa1311270:CDS |
| ATATTTGGACAAACATGGGT+GGG | 0.588555 | 8_4:-7980137 | Msa1311270:CDS |
| GATTCTTGACCATCTTCAGA+AGG | 0.598500 | 8_4:-7980336 | Msa1311270:intron |
| AGACACATACAGACCTCAGT+TGG | 0.598626 | 8_4:+7980525 | None:intergenic |
| AAAGGCAAAATACAAGGAGT+GGG | 0.618207 | 8_4:-7980927 | Msa1311270:CDS |
| AATGAGGCCAAACGCTTCGG+CGG | 0.621498 | 8_4:-7983973 | Msa1311270:CDS |
| ATGAAATGTTAAGTTTCACC+AGG | 0.625530 | 8_4:+7979885 | None:intergenic |
| CAGAAACAAGAACATACGAA+AGG | 0.633885 | 8_4:-7982371 | Msa1311270:CDS |
| GATCCTGTCATTACTCCAAG+TGG | 0.647756 | 8_4:-7980380 | Msa1311270:CDS |
| AATATTTGGACAAACATGGG+TGG | 0.650582 | 8_4:-7980138 | Msa1311270:CDS |
| ACTAGTTGTGATGGATCAAG+TGG | 0.661529 | 8_4:+7980193 | None:intergenic |
| CTCAGTGTAAGCATCGATGG+CGG | 0.679330 | 8_4:+7983887 | None:intergenic |
| CGCCATCGATGCTTACACTG+AGG | 0.684093 | 8_4:-7983886 | Msa1311270:intron |
| AATATGGCAAGAGTTTGCAA+AGG | 0.692026 | 8_4:-7980945 | Msa1311270:CDS |
| TGAATTTGATCCGATCACGA+GGG | 0.713022 | 8_4:-7980218 | Msa1311270:CDS |
| AGATGATGACATACCAACTG+AGG | 0.723021 | 8_4:-7980538 | Msa1311270:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTGATTTGAAATT+TGG | - | chr8_4:7980295-7980314 | Msa1311270:intron | 10.0% |
| !!! | TTTAATTTGATTTGAAATTT+GGG | - | chr8_4:7980296-7980315 | Msa1311270:intron | 10.0% |
| !!! | TATTTGATTATTTTGTAAAA+TGG | - | chr8_4:7981449-7981468 | Msa1311270:intron | 10.0% |
| !! | AATAATGAAATACTATTTAT+AGG | - | chr8_4:7982136-7982155 | Msa1311270:intron | 10.0% |
| !! | TGACATTAAAATTTAAATAA+TGG | + | chr8_4:7982813-7982832 | None:intergenic | 10.0% |
| !! | ATAGTTAATAATAAATACAA+TGG | + | chr8_4:7983148-7983167 | None:intergenic | 10.0% |
| !! | TAATGTGAATTGTAAAAAAT+TGG | + | chr8_4:7979863-7979882 | None:intergenic | 15.0% |
| !! | CTAATGTTTATATCTATTAT+GGG | + | chr8_4:7979926-7979945 | None:intergenic | 15.0% |
| !! | TCTAATGTTTATATCTATTA+TGG | + | chr8_4:7979927-7979946 | None:intergenic | 15.0% |
| !!! | TATGAAATTTGTGAATTTTT+TGG | - | chr8_4:7980251-7980270 | Msa1311270:intron | 15.0% |
| !!! | ATGAAATTTGTGAATTTTTT+GGG | - | chr8_4:7980252-7980271 | Msa1311270:intron | 15.0% |
| !! | TACAATATTAGCAAAATTAT+AGG | - | chr8_4:7982222-7982241 | Msa1311270:intron | 15.0% |
| !! | ATTATTCATTTGAAAAATGA+GGG | + | chr8_4:7982896-7982915 | None:intergenic | 15.0% |
| !!! | AATAATGATTCTTTTGTTTT+TGG | - | chr8_4:7982910-7982929 | Msa1311270:intron | 15.0% |
| !! | GTAAGTAAATATGGAAAATT+TGG | + | chr8_4:7980085-7980104 | None:intergenic | 20.0% |
| !!! | TTTTGCAATTGAAAACAAAA+GGG | + | chr8_4:7980107-7980126 | None:intergenic | 20.0% |
| !!! | TTTTTGCAATTGAAAACAAA+AGG | + | chr8_4:7980108-7980127 | None:intergenic | 20.0% |
| !! | TTCTTAAATTTATTTATGCG+TGG | - | chr8_4:7980818-7980837 | Msa1311270:intron | 20.0% |
| !! | TCTTAAATTTATTTATGCGT+GGG | - | chr8_4:7980819-7980838 | Msa1311270:intron | 20.0% |
| !! | ATCAAATATAAGATGTAATG+AGG | + | chr8_4:7981437-7981456 | None:intergenic | 20.0% |
| !! | TGATATATTAAAACTGTCAT+TGG | - | chr8_4:7981938-7981957 | Msa1311270:intron | 20.0% |
| !! | GATATATTAAAACTGTCATT+GGG | - | chr8_4:7981939-7981958 | Msa1311270:intron | 20.0% |
| !! | AAAACATCGTCATAAATTAA+AGG | - | chr8_4:7981986-7982005 | Msa1311270:intron | 20.0% |
| !! | AAACATCGTCATAAATTAAA+GGG | - | chr8_4:7981987-7982006 | Msa1311270:intron | 20.0% |
| !! | GAATATATATGTACATTGTA+AGG | - | chr8_4:7982083-7982102 | Msa1311270:intron | 20.0% |
| !! | ATTATTTGAGTCATGATTTA+CGG | + | chr8_4:7982122-7982141 | None:intergenic | 20.0% |
| !! | TTAGCAAAATTATAGGATAT+TGG | - | chr8_4:7982229-7982248 | Msa1311270:intron | 20.0% |
| !! | AAAATTATAGGATATTGGTA+GGG | - | chr8_4:7982234-7982253 | Msa1311270:intron | 20.0% |
| !!! | CCTATTTAGAATTACAAAAT+AGG | + | chr8_4:7982353-7982372 | None:intergenic | 20.0% |
| !!! | CCTATTTTGTAATTCTAAAT+AGG | - | chr8_4:7982350-7982369 | Msa1311270:intron | 20.0% |
| !! | CATTATTCATTTGAAAAATG+AGG | + | chr8_4:7982897-7982916 | None:intergenic | 20.0% |
| ! | ATGGTTTATTATGTGAATGA+AGG | + | chr8_4:7979902-7979921 | None:intergenic | 25.0% |
| ! | GTTTATATCTATTATGGGTA+TGG | + | chr8_4:7979921-7979940 | None:intergenic | 25.0% |
| ! | AACAAAAGGGTAAGTAAATA+TGG | + | chr8_4:7980094-7980113 | None:intergenic | 25.0% |
| ! | TATGTATGCAATTGAAATTG+TGG | - | chr8_4:7980348-7980367 | Msa1311270:CDS | 25.0% |
| !! | TTTGGTTTATTTGTAGTGAA+TGG | - | chr8_4:7980425-7980444 | Msa1311270:CDS | 25.0% |
| ! | TTGGTTTATTTGTAGTGAAT+GGG | - | chr8_4:7980426-7980445 | Msa1311270:CDS | 25.0% |
| ! | CTTAAATTTATTTATGCGTG+GGG | - | chr8_4:7980820-7980839 | Msa1311270:intron | 25.0% |
| ! | TCAAGAATCTATTAACATCA+AGG | + | chr8_4:7980855-7980874 | None:intergenic | 25.0% |
| ! | GATCAGAATTCTTAAAATTG+TGG | + | chr8_4:7980913-7980932 | None:intergenic | 25.0% |
| !! | TATTTGATAATTGAGTTGCA+AGG | + | chr8_4:7980976-7980995 | None:intergenic | 25.0% |
| ! | AATCTTACGTAAAGAAAACA+TGG | + | chr8_4:7981015-7981034 | None:intergenic | 25.0% |
| ! | TTCTTTACGTAAGATTTAGT+TGG | - | chr8_4:7981019-7981038 | Msa1311270:intron | 25.0% |
| ! | AAGAGAATAATATTAAGTCG+AGG | + | chr8_4:7981177-7981196 | None:intergenic | 25.0% |
| ! | TCTAAACCAAACAAAACTTT+GGG | - | chr8_4:7981251-7981270 | Msa1311270:intron | 25.0% |
| ! | AAAACAAGACATACATATCT+TGG | + | chr8_4:7981296-7981315 | None:intergenic | 25.0% |
| ! | TTACTTGTTTAAGTGTTAAC+TGG | - | chr8_4:7981712-7981731 | Msa1311270:intron | 25.0% |
| ! | ACAAAGTTGTAAAATACAGA+AGG | + | chr8_4:7981771-7981790 | None:intergenic | 25.0% |
| ! | CAAAATTATAGGATATTGGT+AGG | - | chr8_4:7982233-7982252 | Msa1311270:intron | 25.0% |
| !! | GTTTAAAATTTCATTTCGTG+TGG | + | chr8_4:7982461-7982480 | None:intergenic | 25.0% |
| ! | TATTTGATGAACAAAAGCTA+AGG | - | chr8_4:7982565-7982584 | Msa1311270:intron | 25.0% |
| !!! | AACAGTTTGTTTGAGAATTT+TGG | - | chr8_4:7982753-7982772 | Msa1311270:intron | 25.0% |
| !!! | TTTGTTTTTGGTCATGATTA+AGG | - | chr8_4:7982922-7982941 | Msa1311270:intron | 25.0% |
| ! | ACATAAAAATAGTTGAGATG+TGG | + | chr8_4:7983186-7983205 | None:intergenic | 25.0% |
| !!! | CATCTCAACTATTTTTATGT+TGG | - | chr8_4:7983186-7983205 | Msa1311270:intron | 25.0% |
| !! | CTAAAGGAAAAACATTTTCT+TGG | - | chr8_4:7983291-7983310 | Msa1311270:intron | 25.0% |
| ! | ATAGATTCGAGAAATAAGTA+AGG | - | chr8_4:7983451-7983470 | Msa1311270:intron | 25.0% |
| ! | TATTTATTAGTCACCCAAAT+TGG | - | chr8_4:7983475-7983494 | Msa1311270:CDS | 25.0% |
| ! | TAAATTCAACAAGCCAATTT+GGG | + | chr8_4:7983491-7983510 | None:intergenic | 25.0% |
| !! | GATTTTCATGTTTCATATTC+TGG | - | chr8_4:7983632-7983651 | Msa1311270:intron | 25.0% |
| ! | ATGAATATTTGGACAAACAT+GGG | - | chr8_4:7983798-7983817 | Msa1311270:intron | 25.0% |
| ! | AGATTAACAGAATATTAAGC+TGG | - | chr8_4:7983835-7983854 | Msa1311270:intron | 25.0% |
| !! | TGTTTAAAGTCACAACATTA+AGG | + | chr8_4:7983962-7983981 | None:intergenic | 25.0% |
| ! | AAACATATGAAGTGTACATA+TGG | - | chr8_4:7983977-7983996 | Msa1311270:exon | 25.0% |
| AGAAGAAGAAGAAGAAGAAA+CGG | + | chr8_4:7979828-7979847 | None:intergenic | 30.0% | |
| !!! | ACATGGGTTTTTTGTTTTGT+AGG | - | chr8_4:7980150-7980169 | Msa1311270:CDS | 30.0% |
| TGAAATAAACGGGAACATTA+GGG | + | chr8_4:7980189-7980208 | None:intergenic | 30.0% | |
| !! | TTGGGTGTTTTTGATTGTTT+AGG | - | chr8_4:7980270-7980289 | Msa1311270:intron | 30.0% |
| !! | TGGGTGTTTTTGATTGTTTA+GGG | - | chr8_4:7980271-7980290 | Msa1311270:intron | 30.0% |
| !! | TTGATTTGAAATTTGGGTTG+TGG | - | chr8_4:7980302-7980321 | Msa1311270:intron | 30.0% |
| !! | TGATTTGAAATTTGGGTTGT+GGG | - | chr8_4:7980303-7980322 | Msa1311270:intron | 30.0% |
| TATGCAATTGAAATTGTGGT+TGG | - | chr8_4:7980352-7980371 | Msa1311270:CDS | 30.0% | |
| ! | TGGTTGGAATATTGAGATTT+TGG | - | chr8_4:7980368-7980387 | Msa1311270:CDS | 30.0% |
| ! | TTGGAATATTGAGATTTTGG+AGG | - | chr8_4:7980371-7980390 | Msa1311270:CDS | 30.0% |
| CAAATAAACCAAACACATTG+TGG | + | chr8_4:7980418-7980437 | None:intergenic | 30.0% | |
| GATTTAATGGCTTCATTCAT+CGG | - | chr8_4:7980564-7980583 | Msa1311270:CDS | 30.0% | |
| ACGAGAGCAATATTTATGAT+AGG | + | chr8_4:7980775-7980794 | None:intergenic | 30.0% | |
| TTCTATTGGAAAGGATCATT+TGG | - | chr8_4:7980887-7980906 | Msa1311270:CDS | 30.0% | |
| CGTAAAGAAAACATGGAAAT+AGG | + | chr8_4:7981008-7981027 | None:intergenic | 30.0% | |
| GTCTAAACCAAACAAAACTT+TGG | - | chr8_4:7981250-7981269 | Msa1311270:intron | 30.0% | |
| CTAAACCAAACAAAACTTTG+GGG | - | chr8_4:7981252-7981271 | Msa1311270:intron | 30.0% | |
| TAAACCAAACAAAACTTTGG+GGG | - | chr8_4:7981253-7981272 | Msa1311270:intron | 30.0% | |
| !!! | GTCTTGTTTTGAGTTAGTTT+TGG | - | chr8_4:7981306-7981325 | Msa1311270:intron | 30.0% |
| ! | TCTTCTTTTGCACATATTTC+AGG | - | chr8_4:7981516-7981535 | Msa1311270:intron | 30.0% |
| ! | AACAAACCTTTTGCAATTCT+CGG | + | chr8_4:7981597-7981616 | None:intergenic | 30.0% |
| CAATTTACAGTTTCTGATCT+AGG | - | chr8_4:7981904-7981923 | Msa1311270:intron | 30.0% | |
| ATCGTCATAAATTAAAGGGT+GGG | - | chr8_4:7981991-7982010 | Msa1311270:intron | 30.0% | |
| ATAAATTAAAGGGTGGGAAT+TGG | - | chr8_4:7981997-7982016 | Msa1311270:intron | 30.0% | |
| TAAATTAAAGGGTGGGAATT+GGG | - | chr8_4:7981998-7982017 | Msa1311270:intron | 30.0% | |
| GAATGAAGAAAAGATAGGAA+GGG | - | chr8_4:7982256-7982275 | Msa1311270:intron | 30.0% | |
| CATATCAATCCGATATTACT+GGG | + | chr8_4:7982286-7982305 | None:intergenic | 30.0% | |
| GTTATACATAATACCAACTG+AGG | - | chr8_4:7982323-7982342 | Msa1311270:intron | 30.0% | |
| ATTTCGTGTGGAAGAATAAA+GGG | + | chr8_4:7982449-7982468 | None:intergenic | 30.0% | |
| !!! | CAAAGCTTTTGGCTTAAAAT+TGG | + | chr8_4:7982483-7982502 | None:intergenic | 30.0% |
| GAATTAGAGAGATAAAGAGA+TGG | + | chr8_4:7982529-7982548 | None:intergenic | 30.0% | |
| AATTCCTAATATTGCTTGCT+TGG | - | chr8_4:7982638-7982657 | Msa1311270:intron | 30.0% | |
| ATTCCTAATATTGCTTGCTT+GGG | - | chr8_4:7982639-7982658 | Msa1311270:intron | 30.0% | |
| TCATTTGAAAAATGAGGGTA+AGG | + | chr8_4:7982891-7982910 | None:intergenic | 30.0% | |
| GCTATATGGTTGAAGAAATA+TGG | - | chr8_4:7982978-7982997 | Msa1311270:intron | 30.0% | |
| GTAAATTCAACAAGCCAATT+TGG | + | chr8_4:7983492-7983511 | None:intergenic | 30.0% | |
| !! | AATTGGCTTGTTGAATTTAC+AGG | - | chr8_4:7983492-7983511 | Msa1311270:CDS | 30.0% |
| CATTTAACTACTCCTTTCTT+AGG | - | chr8_4:7983694-7983713 | Msa1311270:intron | 30.0% | |
| AAGTTTGATACTAGTTGTGA+TGG | + | chr8_4:7983758-7983777 | None:intergenic | 30.0% | |
| ATCACAACTAGTATCAAACT+TGG | - | chr8_4:7983757-7983776 | Msa1311270:CDS | 30.0% | |
| CATGTTTGTCCAAATATTCA+TGG | + | chr8_4:7983799-7983818 | None:intergenic | 30.0% | |
| CATGAATATTTGGACAAACA+TGG | - | chr8_4:7983797-7983816 | Msa1311270:intron | 30.0% | |
| ATGAAATGTTAAGTTTCACC+AGG | + | chr8_4:7984057-7984076 | None:intergenic | 30.0% | |
| !! | TTTATTTGACCAATTTGCTG+TGG | - | chr8_4:7984103-7984122 | Msa1311270:five_prime_UTR | 30.0% |
| TAAAAGAATTGTGGAAGAGA+GGG | - | chr8_4:7984134-7984153 | Msa1311270:five_prime_UTR | 30.0% | |
| ! | AGAAAGGTAACAACGAGTTT+TGG | + | chr8_4:7979792-7979811 | None:intergenic | 35.0% |
| TCGTTGTTACCTTTCTTCAT+CGG | - | chr8_4:7979796-7979815 | Msa1311270:three_prime_UTR | 35.0% | |
| AGCGAAGAAAAACAGAAATG+AGG | - | chr8_4:7979950-7979969 | Msa1311270:three_prime_UTR | 35.0% | |
| ACTTTGTAACGTTTCTGACA+TGG | - | chr8_4:7980133-7980152 | Msa1311270:CDS | 35.0% | |
| CTTTGTAACGTTTCTGACAT+GGG | - | chr8_4:7980134-7980153 | Msa1311270:CDS | 35.0% | |
| GTGAAATAAACGGGAACATT+AGG | + | chr8_4:7980190-7980209 | None:intergenic | 35.0% | |
| AGCACGATTGGTGAAATAAA+CGG | + | chr8_4:7980200-7980219 | None:intergenic | 35.0% | |
| !!! | ATTTGGGTTGTGGGTTTTTT+AGG | - | chr8_4:7980312-7980331 | Msa1311270:intron | 35.0% |
| !!! | TTTGGGTTGTGGGTTTTTTA+GGG | - | chr8_4:7980313-7980332 | Msa1311270:intron | 35.0% |
| AATTGTGTCCACAATGTGTT+TGG | - | chr8_4:7980407-7980426 | Msa1311270:CDS | 35.0% | |
| TTATTTGTAGTGAATGGGAG+AGG | - | chr8_4:7980431-7980450 | Msa1311270:intron | 35.0% | |
| TATTTGTAGTGAATGGGAGA+GGG | - | chr8_4:7980432-7980451 | Msa1311270:intron | 35.0% | |
| ! | CGTGCATTTTCACGAATAAA+GGG | + | chr8_4:7980665-7980684 | None:intergenic | 35.0% |
| AATCCACGTGACTTTACATT+CGG | - | chr8_4:7980711-7980730 | Msa1311270:intron | 35.0% | |
| GATTAGGCGTAAAACAGATT+GGG | - | chr8_4:7980733-7980752 | Msa1311270:intron | 35.0% | |
| ! | GTTGAGTAGTTCTATTGGAA+AGG | - | chr8_4:7980878-7980897 | Msa1311270:intron | 35.0% |
| ! | GTAAGATTTAGTTGGTTCCT+GGG | - | chr8_4:7981027-7981046 | Msa1311270:intron | 35.0% |
| GAGAGGTTTATAGCAAACAT+AGG | + | chr8_4:7981117-7981136 | None:intergenic | 35.0% | |
| ATATTAAGTCGAGGTTTCCA+CGG | + | chr8_4:7981168-7981187 | None:intergenic | 35.0% | |
| ATTTCAGGCACACTATATGT+TGG | - | chr8_4:7981531-7981550 | Msa1311270:intron | 35.0% | |
| TTTCAGGCACACTATATGTT+GGG | - | chr8_4:7981532-7981551 | Msa1311270:intron | 35.0% | |
| CAGAAACAAGAACATACGAA+AGG | - | chr8_4:7981568-7981587 | Msa1311270:intron | 35.0% | |
| AGAAGGTCACAAACAGAAAA+GGG | + | chr8_4:7981754-7981773 | None:intergenic | 35.0% | |
| TGTCCTGCAACATTTATCAA+TGG | + | chr8_4:7981795-7981814 | None:intergenic | 35.0% | |
| CATCGTCATAAATTAAAGGG+TGG | - | chr8_4:7981990-7982009 | Msa1311270:intron | 35.0% | |
| GTAGGGAATGAAGAAAAGAT+AGG | - | chr8_4:7982251-7982270 | Msa1311270:intron | 35.0% | |
| GGAATGAAGAAAAGATAGGA+AGG | - | chr8_4:7982255-7982274 | Msa1311270:intron | 35.0% | |
| CCATATCAATCCGATATTAC+TGG | + | chr8_4:7982287-7982306 | None:intergenic | 35.0% | |
| CCAGTAATATCGGATTGATA+TGG | - | chr8_4:7982284-7982303 | Msa1311270:intron | 35.0% | |
| AATATCGGATTGATATGGTG+TGG | - | chr8_4:7982289-7982308 | Msa1311270:intron | 35.0% | |
| GTGTATGAATTATTGGGCTA+GGG | + | chr8_4:7982407-7982426 | None:intergenic | 35.0% | |
| AGTGTATGAATTATTGGGCT+AGG | + | chr8_4:7982408-7982427 | None:intergenic | 35.0% | |
| AGCCCAATAATTCATACACT+CGG | - | chr8_4:7982408-7982427 | Msa1311270:CDS | 35.0% | |
| TGCCGAGTGTATGAATTATT+GGG | + | chr8_4:7982413-7982432 | None:intergenic | 35.0% | |
| TGGAAGAATAAAGGGGATTA+GGG | + | chr8_4:7982441-7982460 | None:intergenic | 35.0% | |
| TTTCGTGTGGAAGAATAAAG+GGG | + | chr8_4:7982448-7982467 | None:intergenic | 35.0% | |
| CATTTCGTGTGGAAGAATAA+AGG | + | chr8_4:7982450-7982469 | None:intergenic | 35.0% | |
| CATCCATGTATATTACGTGA+GGG | - | chr8_4:7982591-7982610 | Msa1311270:intron | 35.0% | |
| TTTGGTCATGATTAAGGCTT+TGG | - | chr8_4:7982928-7982947 | Msa1311270:intron | 35.0% | |
| !! | ATGATTAAGGCTTTGGATCT+TGG | - | chr8_4:7982935-7982954 | Msa1311270:intron | 35.0% |
| !! | TGATTAAGGCTTTGGATCTT+GGG | - | chr8_4:7982936-7982955 | Msa1311270:intron | 35.0% |
| AATATGGCAAGAGTTTGCAA+AGG | - | chr8_4:7982994-7983013 | Msa1311270:intron | 35.0% | |
| GTTTGCAAAGGCAAAATACA+AGG | - | chr8_4:7983006-7983025 | Msa1311270:intron | 35.0% | |
| AAAGGCAAAATACAAGGAGT+GGG | - | chr8_4:7983012-7983031 | Msa1311270:intron | 35.0% | |
| AAAAATAGTTGAGATGTGGC+TGG | + | chr8_4:7983182-7983201 | None:intergenic | 35.0% | |
| !!! | ACATTTTCTTGGCTCTGAAA+TGG | - | chr8_4:7983302-7983321 | Msa1311270:intron | 35.0% |
| ! | TACTTCCCATTTGAAACAGT+TGG | - | chr8_4:7983347-7983366 | Msa1311270:intron | 35.0% |
| TTCTACAGCATAGATGATCT+GGG | + | chr8_4:7983519-7983538 | None:intergenic | 35.0% | |
| ATTCTACAGCATAGATGATC+TGG | + | chr8_4:7983520-7983539 | None:intergenic | 35.0% | |
| ! | ATCACATTACCTTCTGAAGA+TGG | + | chr8_4:7983615-7983634 | None:intergenic | 35.0% |
| !! | ATGTTTTTCGATATCGATCG+AGG | - | chr8_4:7983660-7983679 | Msa1311270:intron | 35.0% |
| TAACTACTCCTTTCTTAGGT+TGG | - | chr8_4:7983698-7983717 | Msa1311270:intron | 35.0% | |
| CAAATTCACCAACCTAAGAA+AGG | + | chr8_4:7983709-7983728 | None:intergenic | 35.0% | |
| TAGTATCAAACTTGGCCATT+AGG | - | chr8_4:7983765-7983784 | Msa1311270:CDS | 35.0% | |
| AGTATCAAACTTGGCCATTA+GGG | - | chr8_4:7983766-7983785 | Msa1311270:CDS | 35.0% | |
| AATATTTGGACAAACATGGG+TGG | - | chr8_4:7983801-7983820 | Msa1311270:intron | 35.0% | |
| ATATTTGGACAAACATGGGT+GGG | - | chr8_4:7983802-7983821 | Msa1311270:intron | 35.0% | |
| TGTGTATACATTTAAGTGCC+TGG | - | chr8_4:7984036-7984055 | Msa1311270:five_prime_UTR | 35.0% | |
| GTTCCTTCCTAAAAGAATTG+TGG | - | chr8_4:7984125-7984144 | Msa1311270:five_prime_UTR | 35.0% | |
| !! | CTTCCACAATTCTTTTAGGA+AGG | + | chr8_4:7984131-7984150 | None:intergenic | 35.0% |
| ! | CTCTCTTCCACAATTCTTTT+AGG | + | chr8_4:7984135-7984154 | None:intergenic | 35.0% |
| CTAAAAGAATTGTGGAAGAG+AGG | - | chr8_4:7984133-7984152 | Msa1311270:five_prime_UTR | 35.0% | |
| ATAAGATGAGAGATAGAGGT+AGG | + | chr8_4:7984168-7984187 | None:intergenic | 35.0% | |
| GCACGATTGGTGAAATAAAC+GGG | + | chr8_4:7980199-7980218 | None:intergenic | 40.0% | |
| ! | TTCTAGAAGAGCAATTCAGC+TGG | - | chr8_4:7980465-7980484 | Msa1311270:intron | 40.0% |
| ! | GCGTGCATTTTCACGAATAA+AGG | + | chr8_4:7980666-7980685 | None:intergenic | 40.0% |
| AATCCGAATGTAAAGTCACG+TGG | + | chr8_4:7980717-7980736 | None:intergenic | 40.0% | |
| CGTGACTTTACATTCGGATT+AGG | - | chr8_4:7980717-7980736 | Msa1311270:intron | 40.0% | |
| GGATTAGGCGTAAAACAGAT+TGG | - | chr8_4:7980732-7980751 | Msa1311270:intron | 40.0% | |
| GCGTAAAACAGATTGGGTAT+TGG | - | chr8_4:7980739-7980758 | Msa1311270:intron | 40.0% | |
| ! | GAGACGTTGAGTAGTTCTAT+TGG | - | chr8_4:7980873-7980892 | Msa1311270:intron | 40.0% |
| ! | CGTAAGATTTAGTTGGTTCC+TGG | - | chr8_4:7981026-7981045 | Msa1311270:intron | 40.0% |
| AAACCTCTCAGATGATGTAC+AGG | - | chr8_4:7981128-7981147 | Msa1311270:intron | 40.0% | |
| !!! | AGATCCCCCAAAGTTTTGTT+TGG | + | chr8_4:7981260-7981279 | None:intergenic | 40.0% |
| TTGAAGTGACATCCTGAGTT+TGG | - | chr8_4:7981384-7981403 | Msa1311270:intron | 40.0% | |
| GAAAATATTCACACAGCCAG+TGG | + | chr8_4:7981415-7981434 | None:intergenic | 40.0% | |
| TGTGCAAAAGAAGATTCAGC+TGG | + | chr8_4:7981510-7981529 | None:intergenic | 40.0% | |
| AGGAATCCGAGAATTGCAAA+AGG | - | chr8_4:7981588-7981607 | Msa1311270:intron | 40.0% | |
| AAACACCCTTGTCTGTTTCA+TGG | - | chr8_4:7981623-7981642 | Msa1311270:intron | 40.0% | |
| GATGTCCATGAAACAGACAA+GGG | + | chr8_4:7981631-7981650 | None:intergenic | 40.0% | |
| TGATGTCCATGAAACAGACA+AGG | + | chr8_4:7981632-7981651 | None:intergenic | 40.0% | |
| CAGAAGGTCACAAACAGAAA+AGG | + | chr8_4:7981755-7981774 | None:intergenic | 40.0% | |
| ! | GTGCCATTGATAAATGTTGC+AGG | - | chr8_4:7981789-7981808 | Msa1311270:intron | 40.0% |
| ! | GGAAGGAAGCATAAAATGTG+GGG | + | chr8_4:7981855-7981874 | None:intergenic | 40.0% |
| ! | GGGAAGGAAGCATAAAATGT+GGG | + | chr8_4:7981856-7981875 | None:intergenic | 40.0% |
| ! | ATTTTATGCTTCCTTCCCCT+GGG | - | chr8_4:7981858-7981877 | Msa1311270:intron | 40.0% |
| ATAAACCACATCCAATCCCA+GGG | + | chr8_4:7981877-7981896 | None:intergenic | 40.0% | |
| AATAAACCACATCCAATCCC+AGG | + | chr8_4:7981878-7981897 | None:intergenic | 40.0% | |
| CATGTAGCAAATGATGCAAC+AGG | + | chr8_4:7982191-7982210 | None:intergenic | 40.0% | |
| AAGGGACATCCCAGTAATAT+CGG | - | chr8_4:7982274-7982293 | Msa1311270:intron | 40.0% | |
| GATTGATATGGTGTGGTGAA+TGG | - | chr8_4:7982296-7982315 | Msa1311270:intron | 40.0% | |
| CAAAATAGGTCATCCTCAGT+TGG | + | chr8_4:7982339-7982358 | None:intergenic | 40.0% | |
| CTGCCGAGTGTATGAATTAT+TGG | + | chr8_4:7982414-7982433 | None:intergenic | 40.0% | |
| GGAAGAATAAAGGGGATTAG+GGG | + | chr8_4:7982440-7982459 | None:intergenic | 40.0% | |
| GTGGAAGAATAAAGGGGATT+AGG | + | chr8_4:7982442-7982461 | None:intergenic | 40.0% | |
| TAAGCCAAAAGCTTTGCCTT+AGG | - | chr8_4:7982487-7982506 | Msa1311270:intron | 40.0% | |
| AAGCCAAAAGCTTTGCCTTA+GGG | - | chr8_4:7982488-7982507 | Msa1311270:intron | 40.0% | |
| GCATCCATGTATATTACGTG+AGG | - | chr8_4:7982590-7982609 | Msa1311270:intron | 40.0% | |
| CATCCCTCACGTAATATACA+TGG | + | chr8_4:7982597-7982616 | None:intergenic | 40.0% | |
| CATGTATATTACGTGAGGGA+TGG | - | chr8_4:7982595-7982614 | Msa1311270:intron | 40.0% | |
| ATATTACGTGAGGGATGGTT+TGG | - | chr8_4:7982600-7982619 | Msa1311270:intron | 40.0% | |
| GAACCCAAGCAAGCAATATT+AGG | + | chr8_4:7982645-7982664 | None:intergenic | 40.0% | |
| !!! | ATTCCTGCTGATTTTCAGTG+TGG | - | chr8_4:7982851-7982870 | Msa1311270:intron | 40.0% |
| AACCATATAGCCCTTTGGAT+TGG | + | chr8_4:7982969-7982988 | None:intergenic | 40.0% | |
| TCTTCAACCATATAGCCCTT+TGG | + | chr8_4:7982974-7982993 | None:intergenic | 40.0% | |
| CAAAGGCAAAATACAAGGAG+TGG | - | chr8_4:7983011-7983030 | Msa1311270:intron | 40.0% | |
| AGCTTGTAAGTCTGCTCTAA+AGG | - | chr8_4:7983275-7983294 | Msa1311270:intron | 40.0% | |
| !! | TTTCTTGGCTCTGAAATGGA+AGG | - | chr8_4:7983306-7983325 | Msa1311270:intron | 40.0% |
| ! | TTCCCATTTGAAACAGTTGG+AGG | - | chr8_4:7983350-7983369 | Msa1311270:intron | 40.0% |
| AGCCTCCAACTGTTTCAAAT+GGG | + | chr8_4:7983355-7983374 | None:intergenic | 40.0% | |
| AGATGATGACATACCAACTG+AGG | - | chr8_4:7983401-7983420 | Msa1311270:intron | 40.0% | |
| CTCTCATATGTATGTCCACT+TGG | + | chr8_4:7983577-7983596 | None:intergenic | 40.0% | |
| GATTCTTGACCATCTTCAGA+AGG | - | chr8_4:7983603-7983622 | Msa1311270:intron | 40.0% | |
| TGAATTTGATCCGATCACGA+GGG | - | chr8_4:7983721-7983740 | Msa1311270:intron | 40.0% | |
| !! | ACTAGTTGTGATGGATCAAG+TGG | + | chr8_4:7983749-7983768 | None:intergenic | 40.0% |
| GGAAGCAGTCCATGAATATT+TGG | - | chr8_4:7983787-7983806 | Msa1311270:intron | 40.0% | |
| GGAAATTTGCAGTTTGTGAG+AGG | - | chr8_4:7983856-7983875 | Msa1311270:intron | 40.0% | |
| GATGATGTGTTGTGCAAGAT+TGG | - | chr8_4:7983910-7983929 | Msa1311270:CDS | 40.0% | |
| GGAGATAAGATGAGAGATAG+AGG | + | chr8_4:7984172-7984191 | None:intergenic | 40.0% | |
| AGAAATGAGGCCAAACGCTT+CGG | - | chr8_4:7979963-7979982 | Msa1311270:three_prime_UTR | 45.0% | |
| ! | CATCGATGGCGGCATTAAAA+CGG | + | chr8_4:7980044-7980063 | None:intergenic | 45.0% |
| !! | AACCTCAGTGTAAGCATCGA+TGG | + | chr8_4:7980058-7980077 | None:intergenic | 45.0% |
| GAGATGACACAAAGCACGAT+TGG | + | chr8_4:7980212-7980231 | None:intergenic | 45.0% | |
| GCTGGACAGTCATTCTGTTA+AGG | - | chr8_4:7980483-7980502 | Msa1311270:intron | 45.0% | |
| ! | CTCGCTCGTGGTTGATTTAA+TGG | - | chr8_4:7980551-7980570 | Msa1311270:CDS | 45.0% |
| CTGATCATTGCAGATCTCTG+AGG | - | chr8_4:7980927-7980946 | Msa1311270:CDS | 45.0% | |
| ! | ATTGCAGATCTCTGAGGAGT+TGG | - | chr8_4:7980933-7980952 | Msa1311270:CDS | 45.0% |
| ACACCTGTACATCATCTGAG+AGG | + | chr8_4:7981134-7981153 | None:intergenic | 45.0% | |
| AGGTTTCCACGGAGATTGTT+CGG | + | chr8_4:7981157-7981176 | None:intergenic | 45.0% | |
| ! | GGGGAAGGAAGCATAAAATG+TGG | + | chr8_4:7981857-7981876 | None:intergenic | 45.0% |
| ! | CATTTTATGCTTCCTTCCCC+TGG | - | chr8_4:7981857-7981876 | Msa1311270:intron | 45.0% |
| TAAACCACATCCAATCCCAG+GGG | + | chr8_4:7981876-7981895 | None:intergenic | 45.0% | |
| ! | ACACCCTAAGGCAAAGCTTT+TGG | + | chr8_4:7982494-7982513 | None:intergenic | 45.0% |
| !! | CTTGCTATTGAGCTGTCAAC+AGG | - | chr8_4:7982776-7982795 | Msa1311270:intron | 45.0% |
| ATTGAGCTGTCAACAGGACA+TGG | - | chr8_4:7982782-7982801 | Msa1311270:intron | 45.0% | |
| TGCCAATCCAAAGGGCTATA+TGG | - | chr8_4:7982964-7982983 | Msa1311270:intron | 45.0% | |
| TTCATCGTCCCAACGATCAT+GGG | - | chr8_4:7983039-7983058 | Msa1311270:intron | 45.0% | |
| CTGCAATTCCCATGATCGTT+GGG | + | chr8_4:7983050-7983069 | None:intergenic | 45.0% | |
| TCTGCAATTCCCATGATCGT+TGG | + | chr8_4:7983051-7983070 | None:intergenic | 45.0% | |
| CAGCCTCCAACTGTTTCAAA+TGG | + | chr8_4:7983356-7983375 | None:intergenic | 45.0% | |
| AGACACATACAGACCTCAGT+TGG | + | chr8_4:7983417-7983436 | None:intergenic | 45.0% | |
| GATCCTGTCATTACTCCAAG+TGG | - | chr8_4:7983559-7983578 | Msa1311270:intron | 45.0% | |
| TGTCCACTTGGAGTAATGAC+AGG | + | chr8_4:7983565-7983584 | None:intergenic | 45.0% | |
| GTGAATTTGATCCGATCACG+AGG | - | chr8_4:7983720-7983739 | Msa1311270:intron | 45.0% | |
| ! | TTCATGGACTGCTTCCCTAA+TGG | + | chr8_4:7983783-7983802 | None:intergenic | 45.0% |
| AGGAAGGAACCACAGCAAAT+TGG | + | chr8_4:7984115-7984134 | None:intergenic | 45.0% | |
| !! | CGGAGAGTACCGATGAAGAA+AGG | + | chr8_4:7979808-7979827 | None:intergenic | 50.0% |
| ACCGTCGTTTCGCAAAAGCT+CGG | + | chr8_4:7980001-7980020 | None:intergenic | 50.0% | |
| !! | CTCAGTGTAAGCATCGATGG+CGG | + | chr8_4:7980055-7980074 | None:intergenic | 50.0% |
| TAGTGAATGGGAGAGGGTTG+AGG | - | chr8_4:7980438-7980457 | Msa1311270:intron | 50.0% | |
| TCAACCACGAGCGAGACAAA+AGG | + | chr8_4:7980546-7980565 | None:intergenic | 50.0% | |
| CCAGTGGTTTCACCAAACTC+AGG | + | chr8_4:7981399-7981418 | None:intergenic | 50.0% | |
| ! | CCTGAGTTTGGTGAAACCAC+TGG | - | chr8_4:7981396-7981415 | Msa1311270:intron | 50.0% |
| AAGCTTTGCCTTAGGGTGTG+TGG | - | chr8_4:7982495-7982514 | Msa1311270:intron | 50.0% | |
| !! | AAAAGCGTCCACACACCCTA+AGG | + | chr8_4:7982506-7982525 | None:intergenic | 50.0% |
| GCACCACACTGAAAATCAGC+AGG | + | chr8_4:7982857-7982876 | None:intergenic | 50.0% | |
| !! | AAGGCTTTGGATCTTGGGAG+AGG | - | chr8_4:7982941-7982960 | Msa1311270:intron | 50.0% |
| GTTCATCGTCCCAACGATCA+TGG | - | chr8_4:7983038-7983057 | Msa1311270:intron | 50.0% | |
| TCAAGTGGTTCCCTCGTGAT+CGG | + | chr8_4:7983734-7983753 | None:intergenic | 50.0% | |
| AATGAGGCCAAACGCTTCGG+CGG | - | chr8_4:7979966-7979985 | Msa1311270:three_prime_UTR | 55.0% | |
| ! | GCCGAGCTTTTGCGAAACGA+CGG | - | chr8_4:7979997-7980016 | Msa1311270:three_prime_UTR | 55.0% |
| CGCCATCGATGCTTACACTG+AGG | - | chr8_4:7980053-7980072 | Msa1311270:three_prime_UTR | 55.0% | |
| ! | TCCTCCTTTTGTCTCGCTCG+TGG | - | chr8_4:7980539-7980558 | Msa1311270:CDS | 55.0% |
| ACCACGAGCGAGACAAAAGG+AGG | + | chr8_4:7980543-7980562 | None:intergenic | 55.0% | |
| ! | TGCACGCGCGATGCACATTT+TGG | - | chr8_4:7980679-7980698 | Msa1311270:intron | 55.0% |
| ! | GCACGCGCGATGCACATTTT+GGG | - | chr8_4:7980680-7980699 | Msa1311270:intron | 55.0% |
| TGGTTCCTGGGCTGCGTTAA+AGG | - | chr8_4:7981039-7981058 | Msa1311270:intron | 55.0% | |
| GGTTCCTGGGCTGCGTTAAA+GGG | - | chr8_4:7981040-7981059 | Msa1311270:intron | 55.0% | |
| GTTCCTGGGCTGCGTTAAAG+GGG | - | chr8_4:7981041-7981060 | Msa1311270:intron | 55.0% | |
| TTCCTGGGCTGCGTTAAAGG+GGG | - | chr8_4:7981042-7981061 | Msa1311270:intron | 55.0% | |
| AGGTGTCCGAACAATCTCCG+TGG | - | chr8_4:7981148-7981167 | Msa1311270:intron | 55.0% | |
| ATGCTTCCTTCCCCTGGGAT+TGG | - | chr8_4:7981863-7981882 | Msa1311270:intron | 55.0% | |
| !! | TGGGAGAGGTGCCAATCCAA+AGG | - | chr8_4:7982955-7982974 | Msa1311270:intron | 55.0% |
| !! | GGGAGAGGTGCCAATCCAAA+GGG | - | chr8_4:7982956-7982975 | Msa1311270:intron | 55.0% |
| ! | TGTCTCACCGCCGAAGCGTT+TGG | + | chr8_4:7979976-7979995 | None:intergenic | 60.0% |
| AACCCCCTTTAACGCAGCCC+AGG | + | chr8_4:7981047-7981066 | None:intergenic | 60.0% | |
| CCACATCCAATCCCAGGGGA+AGG | + | chr8_4:7981872-7981891 | None:intergenic | 60.0% | |
| CCTTCCCCTGGGATTGGATG+TGG | - | chr8_4:7981869-7981888 | Msa1311270:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 7979754 | 7984207 | 7979754 | ID=Msa1311270;Name=Msa1311270 |
| chr8_4 | mRNA | 7979754 | 7984207 | 7979754 | ID=Msa1311270-mRNA-1;Parent=Msa1311270;Name=Msa1311270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=213|0.85|0.87|1|1|1|8|366|286 |
| chr8_4 | exon | 7979754 | 7980245 | 7979754 | ID=Msa1311270-mRNA-1:exon:2940;Parent=Msa1311270-mRNA-1 |
| chr8_4 | exon | 7980337 | 7980447 | 7980337 | ID=Msa1311270-mRNA-1:exon:2939;Parent=Msa1311270-mRNA-1 |
| chr8_4 | exon | 7980539 | 7980689 | 7980539 | ID=Msa1311270-mRNA-1:exon:2938;Parent=Msa1311270-mRNA-1 |
| chr8_4 | exon | 7980884 | 7981017 | 7980884 | ID=Msa1311270-mRNA-1:exon:2937;Parent=Msa1311270-mRNA-1 |
| chr8_4 | exon | 7982352 | 7982450 | 7982352 | ID=Msa1311270-mRNA-1:exon:2936;Parent=Msa1311270-mRNA-1 |
| chr8_4 | exon | 7983457 | 7983520 | 7983457 | ID=Msa1311270-mRNA-1:exon:2935;Parent=Msa1311270-mRNA-1 |
| chr8_4 | exon | 7983722 | 7983789 | 7983722 | ID=Msa1311270-mRNA-1:exon:2934;Parent=Msa1311270-mRNA-1 |
| chr8_4 | exon | 7983887 | 7984207 | 7983887 | ID=Msa1311270-mRNA-1:exon:2933;Parent=Msa1311270-mRNA-1 |
| chr8_4 | five_prime_UTR | 7983995 | 7984207 | 7983995 | ID=Msa1311270-mRNA-1:five_prime_utr;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7983887 | 7983994 | 7983887 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7983722 | 7983789 | 7983722 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7983457 | 7983520 | 7983457 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7982352 | 7982450 | 7982352 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7980884 | 7981017 | 7980884 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7980539 | 7980689 | 7980539 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7980337 | 7980447 | 7980337 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | CDS | 7980120 | 7980245 | 7980120 | ID=Msa1311270-mRNA-1:cds;Parent=Msa1311270-mRNA-1 |
| chr8_4 | three_prime_UTR | 7979754 | 7980119 | 7979754 | ID=Msa1311270-mRNA-1:three_prime_utr;Parent=Msa1311270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
