Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1231410 | Msa1411070 | 0.831915 | 1.272952e-55 | -8.615850e-47 |
| Msa1231410 | Msa1450320 | 0.864388 | 1.260842e-64 | -8.615850e-47 |
| Msa1180880 | Msa1231410 | 0.901791 | 1.873592e-78 | -8.615850e-47 |
| Msa0853540 | Msa1231410 | 0.800373 | 1.485474e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCATGAATAGAGAACTTT+TGG | 0.267971 | 8_2:+7545286 | None:intergenic |
| TGCAATTGCTATAAATAATA+TGG | 0.292591 | 8_2:-7545099 | Msa1231410:three_prime_UTR |
| TTCAGATCGATGTTCTTCTA+TGG | 0.299829 | 8_2:-7546787 | Msa1231410:exon |
| TACCAAAAGTTCTCTATTCA+TGG | 0.358136 | 8_2:-7545288 | Msa1231410:CDS |
| CAACGATGAGTTGAAATTTG+TGG | 0.382898 | 8_2:+7545313 | None:intergenic |
| CTTCTATGGATAGACAAATC+TGG | 0.438150 | 8_2:-7546773 | Msa1231410:exon |
| CATGGCAAAGACCTCACAAT+TGG | 0.442075 | 8_2:-7545270 | Msa1231410:CDS |
| TGGATAGACAAATCTGGCTA+TGG | 0.454461 | 8_2:-7546767 | Msa1231410:CDS |
| ATTTCAAATTTGACATACAT+TGG | 0.457961 | 8_2:+7545224 | None:intergenic |
| GATGAAGGAACGCACAGAAC+AGG | 0.465124 | 8_2:-7546736 | Msa1231410:intron |
| GAGTTGGTTCCAATCGGAAA+GGG | 0.479537 | 8_2:+7546917 | None:intergenic |
| TAGAGAAGACATGAATAAGC+TGG | 0.500230 | 8_2:+7545191 | None:intergenic |
| GGTTTGTTGTTGCTGTGGTT+AGG | 0.511102 | 8_2:-7546632 | Msa1231410:CDS |
| CAAATTTGACATACATTGGA+GGG | 0.513620 | 8_2:+7545228 | None:intergenic |
| GGATAGACAAATCTGGCTAT+GGG | 0.538535 | 8_2:-7546766 | Msa1231410:CDS |
| TCAAATTTGACATACATTGG+AGG | 0.539829 | 8_2:+7545227 | None:intergenic |
| CCACCACCATCGTGTTCCAC+TGG | 0.543632 | 8_2:-7546893 | Msa1231410:five_prime_UTR |
| TCTGTGGTTTGTTGTTGCTG+TGG | 0.545340 | 8_2:-7546637 | Msa1231410:CDS |
| GCTATGGGAAAGAATGATGA+AGG | 0.551874 | 8_2:-7546751 | Msa1231410:CDS |
| AGTTGGTTCCAATCGGAAAG+AGG | 0.565526 | 8_2:+7548031 | None:intergenic |
| GGTGGTGAGTTGGTTCCAAT+CGG | 0.582017 | 8_2:+7546911 | None:intergenic |
| GTTGGTTCCAATCGGAAAGA+GGG | 0.607074 | 8_2:+7548032 | None:intergenic |
| ACATTGAGTTGATCATAAAG+AGG | 0.610727 | 8_2:+7545137 | None:intergenic |
| ACACGATGGTGGTGGTGAGT+TGG | 0.612521 | 8_2:+7546901 | None:intergenic |
| AGTTGGTTCCAATCGGAAAG+GGG | 0.612934 | 8_2:+7546918 | None:intergenic |
| TGAGTTGGTTCCAATCGGAA+AGG | 0.630123 | 8_2:+7546916 | None:intergenic |
| GTTGGTTCCAATCGGAAAGG+GGG | 0.632280 | 8_2:+7546919 | None:intergenic |
| AACCACTCTCTTACTCTCTG+TGG | 0.633518 | 8_2:-7546653 | Msa1231410:CDS |
| AAGAATCTCAACCAATTGTG+AGG | 0.643130 | 8_2:+7545259 | None:intergenic |
| AACCACAGAGAGTAAGAGAG+TGG | 0.650013 | 8_2:+7546651 | None:intergenic |
| GAGAGATAAGCTATAACCAG+TGG | 0.651058 | 8_2:+7546877 | None:intergenic |
| GGTTCCAATCGGAAAGAGGG+AGG | 0.654580 | 8_2:+7548035 | None:intergenic |
| TAACCAGTGGAACACGATGG+TGG | 0.687837 | 8_2:+7546890 | None:intergenic |
| AATTGCTATAAATAATATGG+TGG | 0.695190 | 8_2:-7545096 | Msa1231410:three_prime_UTR |
| CCAGTGGAACACGATGGTGG+TGG | 0.726701 | 8_2:+7546893 | None:intergenic |
| CTATAACCAGTGGAACACGA+TGG | 0.755110 | 8_2:+7546887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAATACCTTTTAAAAAA+TGG | + | chr8_2:7545422-7545441 | None:intergenic | 15.0% |
| !!! | CTATATTAACATTTTTTAGT+TGG | + | chr8_2:7545669-7545688 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8_2:7546010-7546029 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8_2:7546009-7546028 | Msa1231410:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr8_2:7546033-7546052 | Msa1231410:intron | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | + | chr8_2:7545422-7545441 | None:intergenic | 15.0% |
| !!! | CTATATTAACATTTTTTAGT+TGG | + | chr8_2:7545669-7545688 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+AGG | - | chr8_2:7546923-7546942 | Msa1231410:five_prime_UTR | 15.0% |
| !! | ATTCTTTAAATGAATTCTAA+GGG | - | chr8_2:7546924-7546943 | Msa1231410:five_prime_UTR | 15.0% |
| !! | TTTGAATTTCAAAATTATAG+TGG | + | chr8_2:7547190-7547209 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTCAATATATG+TGG | - | chr8_2:7547617-7547636 | Msa1231410:intron | 15.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | + | chr8_2:7545306-7545325 | None:intergenic | 20.0% |
| !! | TGAGTAAAAAAAACGAAATT+TGG | + | chr8_2:7545312-7545331 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | + | chr8_2:7545411-7545430 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | - | chr8_2:7545411-7545430 | Msa1231410:intron | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | + | chr8_2:7545593-7545612 | None:intergenic | 20.0% |
| !!! | AAACAACACTCATTTTAAAA+CGG | + | chr8_2:7545927-7545946 | None:intergenic | 20.0% |
| !!! | TTTAAAATGAGTGTTGTTTT+AGG | - | chr8_2:7545928-7545947 | Msa1231410:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr8_2:7545976-7545995 | Msa1231410:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr8_2:7546019-7546038 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8_2:7546096-7546115 | Msa1231410:intron | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | + | chr8_2:7545306-7545325 | None:intergenic | 20.0% |
| !! | TGAGTAAAAAAAACGAAATT+TGG | + | chr8_2:7545312-7545331 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | + | chr8_2:7545411-7545430 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | - | chr8_2:7545411-7545430 | Msa1231410:intron | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | + | chr8_2:7545593-7545612 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTAAG+GGG | - | chr8_2:7546925-7546944 | Msa1231410:five_prime_UTR | 20.0% |
| !! | GATAGTTAACAAAATTATAG+TGG | + | chr8_2:7547122-7547141 | None:intergenic | 20.0% |
| !! | ATTGTAATAAAAGAGGAAAT+AGG | + | chr8_2:7547771-7547790 | None:intergenic | 20.0% |
| !! | ATTTCAAATTTGACATACAT+TGG | + | chr8_2:7547891-7547910 | None:intergenic | 20.0% |
| !! | TGCAATTGCTATAAATAATA+TGG | - | chr8_2:7548013-7548032 | Msa1231410:intron | 20.0% |
| !! | AATTGCTATAAATAATATGG+TGG | - | chr8_2:7548016-7548035 | Msa1231410:intron | 20.0% |
| !! | AATTGAAAAATATTGCAACA+CGG | + | chr8_2:7548049-7548068 | None:intergenic | 20.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | - | chr8_2:7545544-7545563 | Msa1231410:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | + | chr8_2:7545594-7545613 | None:intergenic | 25.0% |
| !!! | ACATGTTTTAGACTATTAGA+AGG | - | chr8_2:7545745-7545764 | Msa1231410:intron | 25.0% |
| !! | TAGATTTTGTGATGTATAAG+TGG | + | chr8_2:7545815-7545834 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAATGTCACTTT+CGG | + | chr8_2:7546125-7546144 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | - | chr8_2:7545544-7545563 | Msa1231410:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | + | chr8_2:7545594-7545613 | None:intergenic | 25.0% |
| ! | AGTTAACAAAATTATAGTGG+AGG | + | chr8_2:7547119-7547138 | None:intergenic | 25.0% |
| !! | ATTTCAAAATTATAGTGGAG+AGG | + | chr8_2:7547185-7547204 | None:intergenic | 25.0% |
| ! | CTATGAGAAATAAAGATAGT+GGG | + | chr8_2:7547219-7547238 | None:intergenic | 25.0% |
| ! | ACTATGAGAAATAAAGATAG+TGG | + | chr8_2:7547220-7547239 | None:intergenic | 25.0% |
| ! | TGAAATTTGCAAACATGAAT+TGG | + | chr8_2:7547263-7547282 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAAACCACACAAT+TGG | + | chr8_2:7547437-7547456 | None:intergenic | 25.0% |
| !! | ATATGTAGCAAACCTTTTAA+TGG | - | chr8_2:7547498-7547517 | Msa1231410:intron | 25.0% |
| ! | CACACATATTATCCATTAAA+AGG | + | chr8_2:7547513-7547532 | None:intergenic | 25.0% |
| ! | ACTAATGACTAAGATAGAAA+AGG | + | chr8_2:7547574-7547593 | None:intergenic | 25.0% |
| !!! | ATAGGTTGGTTTGTATATAT+TGG | + | chr8_2:7547753-7547772 | None:intergenic | 25.0% |
| ! | TAATAAAAGAGGAAATAGGT+TGG | + | chr8_2:7547767-7547786 | None:intergenic | 25.0% |
| !! | TCCTCTTTTATTACAATAAC+AGG | - | chr8_2:7547774-7547793 | Msa1231410:intron | 25.0% |
| !! | CCTCTTTTATTACAATAACA+GGG | - | chr8_2:7547775-7547794 | Msa1231410:intron | 25.0% |
| !! | AAGCGACACTCATTTTAAAA+CGG | - | chr8_2:7545049-7545068 | Msa1231410:three_prime_UTR | 30.0% |
| GTGAGAGAAGAAAAAATAGA+GGG | + | chr8_2:7545147-7545166 | None:intergenic | 30.0% | |
| ATTCCAGTCACAAAATAACT+TGG | + | chr8_2:7545507-7545526 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACTGGAATTCAA+TGG | - | chr8_2:7545511-7545530 | Msa1231410:intron | 30.0% |
| AATGAAGCAACTAAACAATG+AGG | - | chr8_2:7545631-7545650 | Msa1231410:intron | 30.0% | |
| !!! | TTTTTAGTTGGCATAAACCA+AGG | + | chr8_2:7545657-7545676 | None:intergenic | 30.0% |
| ! | TGTCAAAACATGTCTAAAAC+AGG | + | chr8_2:7545771-7545790 | None:intergenic | 30.0% |
| ATTTCAAAAGAATGAGTTCG+CGG | + | chr8_2:7545879-7545898 | None:intergenic | 30.0% | |
| !!! | AACACTCATTTTAAAACGGA+GGG | + | chr8_2:7545923-7545942 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | - | chr8_2:7546058-7546077 | Msa1231410:intron | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+GGG | - | chr8_2:7546062-7546081 | Msa1231410:intron | 30.0% |
| !! | AAGCGACACTCATTTTAAAA+CGG | - | chr8_2:7545049-7545068 | Msa1231410:three_prime_UTR | 30.0% |
| GTGAGAGAAGAAAAAATAGA+GGG | + | chr8_2:7545147-7545166 | None:intergenic | 30.0% | |
| ATTCCAGTCACAAAATAACT+TGG | + | chr8_2:7545507-7545526 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACTGGAATTCAA+TGG | - | chr8_2:7545511-7545530 | Msa1231410:intron | 30.0% |
| AATGAAGCAACTAAACAATG+AGG | - | chr8_2:7545631-7545650 | Msa1231410:intron | 30.0% | |
| !!! | TTTTTAGTTGGCATAAACCA+AGG | + | chr8_2:7545657-7545676 | None:intergenic | 30.0% |
| !! | TTACTTACTTAAGAGCATCA+TGG | + | chr8_2:7546872-7546891 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGTAACTCACAT+AGG | + | chr8_2:7547474-7547493 | None:intergenic | 30.0% |
| ! | AAAGGAATACCTTTTCATAG+AGG | + | chr8_2:7547556-7547575 | None:intergenic | 30.0% |
| TATTGGAAAGATTCACTTGA+TGG | + | chr8_2:7547736-7547755 | None:intergenic | 30.0% | |
| CCCTGTTATTGTAATAAAAG+AGG | + | chr8_2:7547778-7547797 | None:intergenic | 30.0% | |
| TACCAAAAGTTCTCTATTCA+TGG | - | chr8_2:7547824-7547843 | Msa1231410:intron | 30.0% | |
| CAAATTTGACATACATTGGA+GGG | + | chr8_2:7547887-7547906 | None:intergenic | 30.0% | |
| TCAAATTTGACATACATTGG+AGG | + | chr8_2:7547888-7547907 | None:intergenic | 30.0% | |
| !! | ACATTGAGTTGATCATAAAG+AGG | + | chr8_2:7547978-7547997 | None:intergenic | 30.0% |
| CGTGAGAGAAGAAAAAATAG+AGG | + | chr8_2:7545148-7545167 | None:intergenic | 35.0% | |
| TTCAGATCGATGTTCTTCTA+TGG | - | chr8_2:7545212-7545231 | Msa1231410:CDS | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | - | chr8_2:7545226-7545245 | Msa1231410:CDS | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | + | chr8_2:7545401-7545420 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+TGG | - | chr8_2:7545501-7545520 | Msa1231410:intron | 35.0% |
| !!! | CAACACTCATTTTAAAACGG+AGG | + | chr8_2:7545924-7545943 | None:intergenic | 35.0% |
| ! | GTGTGTAGAGTATTAATTGG+AGG | - | chr8_2:7546061-7546080 | Msa1231410:intron | 35.0% |
| CGTGAGAGAAGAAAAAATAG+AGG | + | chr8_2:7545148-7545167 | None:intergenic | 35.0% | |
| TTCAGATCGATGTTCTTCTA+TGG | - | chr8_2:7545212-7545231 | Msa1231410:CDS | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | - | chr8_2:7545226-7545245 | Msa1231410:CDS | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | + | chr8_2:7545401-7545420 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+TGG | - | chr8_2:7545501-7545520 | Msa1231410:intron | 35.0% |
| !! | TTCTAAGGGGCTTAAGTTTT+TGG | - | chr8_2:7546938-7546957 | Msa1231410:intron | 35.0% |
| ATATGTACTTTGACTGCACA+TGG | - | chr8_2:7547289-7547308 | Msa1231410:intron | 35.0% | |
| ATGGATAATATGTGTGCTCT+AGG | - | chr8_2:7547517-7547536 | Msa1231410:intron | 35.0% | |
| ! | CAACGATGAGTTGAAATTTG+TGG | + | chr8_2:7547802-7547821 | None:intergenic | 35.0% |
| ! | TGCCATGAATAGAGAACTTT+TGG | + | chr8_2:7547829-7547848 | None:intergenic | 35.0% |
| AAGAATCTCAACCAATTGTG+AGG | + | chr8_2:7547856-7547875 | None:intergenic | 35.0% | |
| TAGAGAAGACATGAATAAGC+TGG | + | chr8_2:7547924-7547943 | None:intergenic | 35.0% | |
| GAGAGATAAGCTATAACCAG+TGG | + | chr8_2:7545125-7545144 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | - | chr8_2:7545232-7545251 | Msa1231410:CDS | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | - | chr8_2:7545233-7545252 | Msa1231410:CDS | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | - | chr8_2:7545248-7545267 | Msa1231410:CDS | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | - | chr8_2:7545710-7545729 | Msa1231410:intron | 40.0% |
| !! | TTAGCCAAATTTAGCTCTCG+TGG | - | chr8_2:7545847-7545866 | Msa1231410:intron | 40.0% |
| TAAGCCACGAGAGCTAAATT+TGG | + | chr8_2:7545854-7545873 | None:intergenic | 40.0% | |
| !! | AAATTTAGCTCTCGTGGCTT+AGG | - | chr8_2:7545853-7545872 | Msa1231410:intron | 40.0% |
| !!! | AACGGAGGGAGTATTTTAGT+GGG | + | chr8_2:7545909-7545928 | None:intergenic | 40.0% |
| !!! | AAACGGAGGGAGTATTTTAG+TGG | + | chr8_2:7545910-7545929 | None:intergenic | 40.0% |
| GAGAGATAAGCTATAACCAG+TGG | + | chr8_2:7545125-7545144 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | - | chr8_2:7545232-7545251 | Msa1231410:CDS | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | - | chr8_2:7545233-7545252 | Msa1231410:CDS | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | - | chr8_2:7545248-7545267 | Msa1231410:CDS | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | - | chr8_2:7545710-7545729 | Msa1231410:intron | 40.0% |
| TGGATGGGGAAATTAACATG+TGG | - | chr8_2:7545730-7545749 | Msa1231410:intron | 40.0% | |
| TGGGGAAATTAACATGTGGT+TGG | - | chr8_2:7546846-7546865 | Msa1231410:five_prime_UTR | 40.0% | |
| GTGAAAGTAAAAGCCGTTAG+AGG | - | chr8_2:7547410-7547429 | Msa1231410:intron | 40.0% | |
| TATTCCTCCCTCTTTCCGAT+TGG | - | chr8_2:7545073-7545092 | Msa1231410:three_prime_UTR | 45.0% | |
| ! | GTTGGTTCCAATCGGAAAGA+GGG | + | chr8_2:7545083-7545102 | None:intergenic | 45.0% |
| ! | AGTTGGTTCCAATCGGAAAG+AGG | + | chr8_2:7545084-7545103 | None:intergenic | 45.0% |
| CTATAACCAGTGGAACACGA+TGG | + | chr8_2:7545115-7545134 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTG+TGG | - | chr8_2:7545346-7545365 | Msa1231410:intron | 45.0% | |
| AACCACAGAGAGTAAGAGAG+TGG | + | chr8_2:7545351-7545370 | None:intergenic | 45.0% | |
| !! | TCTGTGGTTTGTTGTTGCTG+TGG | - | chr8_2:7545362-7545381 | Msa1231410:intron | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | - | chr8_2:7545367-7545386 | Msa1231410:intron | 45.0% |
| GCAACTAAACAATGAGGCCT+TGG | - | chr8_2:7545637-7545656 | Msa1231410:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | - | chr8_2:7545715-7545734 | Msa1231410:intron | 45.0% | |
| AGCCTCAACATGTATGGATG+GGG | - | chr8_2:7545716-7545735 | Msa1231410:intron | 45.0% | |
| TTCCCCATCCATACATGTTG+AGG | + | chr8_2:7545721-7545740 | None:intergenic | 45.0% | |
| !!! | ACGGAGGGAGTATTTTAGTG+GGG | + | chr8_2:7545908-7545927 | None:intergenic | 45.0% |
| ! | AGTTGGTTCCAATCGGAAAG+GGG | + | chr8_2:7545084-7545103 | None:intergenic | 45.0% |
| ! | GAGTTGGTTCCAATCGGAAA+GGG | + | chr8_2:7545085-7545104 | None:intergenic | 45.0% |
| !! | TGAGTTGGTTCCAATCGGAA+AGG | + | chr8_2:7545086-7545105 | None:intergenic | 45.0% |
| CTATAACCAGTGGAACACGA+TGG | + | chr8_2:7545115-7545134 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTG+TGG | - | chr8_2:7545346-7545365 | Msa1231410:intron | 45.0% | |
| AACCACAGAGAGTAAGAGAG+TGG | + | chr8_2:7545351-7545370 | None:intergenic | 45.0% | |
| !! | TCTGTGGTTTGTTGTTGCTG+TGG | - | chr8_2:7545362-7545381 | Msa1231410:intron | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | - | chr8_2:7545367-7545386 | Msa1231410:intron | 45.0% |
| GCAACTAAACAATGAGGCCT+TGG | - | chr8_2:7545637-7545656 | Msa1231410:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | - | chr8_2:7545715-7545734 | Msa1231410:intron | 45.0% | |
| AGCCTCAACATGTATGGATG+GGG | - | chr8_2:7545716-7545735 | Msa1231410:intron | 45.0% | |
| TTCCCCATCCATACATGTTG+AGG | + | chr8_2:7545721-7545740 | None:intergenic | 45.0% | |
| CCACACAATTGGACCTCTAA+CGG | + | chr8_2:7547426-7547445 | None:intergenic | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | - | chr8_2:7547528-7547547 | Msa1231410:intron | 45.0% |
| TCCACGGTACCTCTATGAAA+AGG | - | chr8_2:7547544-7547563 | Msa1231410:intron | 45.0% | |
| !!! | ACCTTTTCATAGAGGTACCG+TGG | + | chr8_2:7547548-7547567 | None:intergenic | 45.0% |
| GGTAAGTCTGCAGGGATAAA+GGG | + | chr8_2:7547715-7547734 | None:intergenic | 45.0% | |
| TGGTAAGTCTGCAGGGATAA+AGG | + | chr8_2:7547716-7547735 | None:intergenic | 45.0% | |
| ! | CACTTGATGGTAAGTCTGCA+GGG | + | chr8_2:7547723-7547742 | None:intergenic | 45.0% |
| ! | TCACTTGATGGTAAGTCTGC+AGG | + | chr8_2:7547724-7547743 | None:intergenic | 45.0% |
| CATGGCAAAGACCTCACAAT+TGG | - | chr8_2:7547842-7547861 | Msa1231410:intron | 45.0% | |
| !!! | TTTTTTTTTTTTATCAATTT+TGG | + | chr8_2:7547348-7547367 | None:intergenic | 5.0% |
| !! | GGTGGTGAGTTGGTTCCAAT+CGG | + | chr8_2:7545091-7545110 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | + | chr8_2:7545112-7545131 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | - | chr8_2:7545263-7545282 | Msa1231410:CDS | 50.0% | |
| !! | ACAGAACAGGTAGCGGAAGT+AGG | - | chr8_2:7545276-7545295 | Msa1231410:CDS | 50.0% |
| GCAGCCTCAACATGTATGGA+TGG | - | chr8_2:7545714-7545733 | Msa1231410:intron | 50.0% | |
| TATTCCTCCCCCTTTCCGAT+TGG | - | chr8_2:7546186-7546205 | Msa1231410:intron | 50.0% | |
| ! | GTTGGTTCCAATCGGAAAGG+GGG | + | chr8_2:7546196-7546215 | None:intergenic | 50.0% |
| !! | GGTGGTGAGTTGGTTCCAAT+CGG | + | chr8_2:7545091-7545110 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | + | chr8_2:7545112-7545131 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | - | chr8_2:7545263-7545282 | Msa1231410:CDS | 50.0% | |
| !! | ACAGAACAGGTAGCGGAAGT+AGG | - | chr8_2:7545276-7545295 | Msa1231410:CDS | 50.0% |
| GCAGCCTCAACATGTATGGA+TGG | - | chr8_2:7545714-7545733 | Msa1231410:intron | 50.0% | |
| CCGTTAGAGGTCCAATTGTG+TGG | - | chr8_2:7547423-7547442 | Msa1231410:intron | 50.0% | |
| GGTTCCAATCGGAAAGAGGG+AGG | + | chr8_2:7545080-7545099 | None:intergenic | 55.0% | |
| !! | ACACGATGGTGGTGGTGAGT+TGG | + | chr8_2:7545101-7545120 | None:intergenic | 55.0% |
| GGAACGCACAGAACAGGTAG+CGG | - | chr8_2:7545269-7545288 | Msa1231410:CDS | 55.0% | |
| !! | ACACGATGGTGGTGGTGAGT+TGG | + | chr8_2:7545101-7545120 | None:intergenic | 55.0% |
| GGAACGCACAGAACAGGTAG+CGG | - | chr8_2:7545269-7545288 | Msa1231410:CDS | 55.0% | |
| ! | CCAGTGGAACACGATGGTGG+TGG | + | chr8_2:7545109-7545128 | None:intergenic | 60.0% |
| CCACCACCATCGTGTTCCAC+TGG | - | chr8_2:7545106-7545125 | Msa1231410:three_prime_UTR | 60.0% | |
| GGTTCCAATCGGAAAGGGGG+AGG | + | chr8_2:7546193-7546212 | None:intergenic | 60.0% | |
| ! | CCAGTGGAACACGATGGTGG+TGG | + | chr8_2:7545109-7545128 | None:intergenic | 60.0% |
| CCACCACCATCGTGTTCCAC+TGG | - | chr8_2:7545106-7545125 | Msa1231410:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 7545033 | 7548101 | 7545033 | ID=Msa1231410;Name=Msa1231410 |
| chr8_2 | mRNA | 7545033 | 7548101 | 7545033 | ID=Msa1231410-mRNA-1;Parent=Msa1231410;Name=Msa1231410-mRNA-1;_AED=0.30;_eAED=0.30;_QI=216|0.33|0.75|1|0.66|0.5|4|142|103 |
| chr8_2 | exon | 7545033 | 7545338 | 7545033 | ID=Msa1231410-mRNA-1:exon:2845;Parent=Msa1231410-mRNA-1 |
| chr8_2 | exon | 7546589 | 7546682 | 7546589 | ID=Msa1231410-mRNA-1:exon:2844;Parent=Msa1231410-mRNA-1 |
| chr8_2 | exon | 7546737 | 7546949 | 7546737 | ID=Msa1231410-mRNA-1:exon:2843;Parent=Msa1231410-mRNA-1 |
| chr8_2 | exon | 7548045 | 7548101 | 7548045 | ID=Msa1231410-mRNA-1:exon:2842;Parent=Msa1231410-mRNA-1 |
| chr8_2 | five_prime_UTR | 7548045 | 7548101 | 7548045 | ID=Msa1231410-mRNA-1:five_prime_utr;Parent=Msa1231410-mRNA-1 |
| chr8_2 | five_prime_UTR | 7546791 | 7546949 | 7546791 | ID=Msa1231410-mRNA-1:five_prime_utr;Parent=Msa1231410-mRNA-1 |
| chr8_2 | CDS | 7546737 | 7546790 | 7546737 | ID=Msa1231410-mRNA-1:cds;Parent=Msa1231410-mRNA-1 |
| chr8_2 | CDS | 7546589 | 7546682 | 7546589 | ID=Msa1231410-mRNA-1:cds;Parent=Msa1231410-mRNA-1 |
| chr8_2 | CDS | 7545175 | 7545338 | 7545175 | ID=Msa1231410-mRNA-1:cds;Parent=Msa1231410-mRNA-1 |
| chr8_2 | three_prime_UTR | 7545033 | 7545174 | 7545033 | ID=Msa1231410-mRNA-1:three_prime_utr;Parent=Msa1231410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
