Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1231410 | Msa1450320 | 0.864388 | 1.260842e-64 | -8.615850e-47 |
| Msa1180880 | Msa1450320 | 0.914924 | 1.081887e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACCAGATTTGATCTTTA+AGG | 0.097101 | tig0032878:-10718 | Msa1450320:five_prime_UTR |
| TGCCATGAATAGAGAACTTT+TGG | 0.267971 | tig0032878:+9004 | None:intergenic |
| TGCAATTGCTATAAATAATA+TGG | 0.292591 | tig0032878:-8817 | Msa1450320:three_prime_UTR |
| TTCAGATCGATGTTCTTCTA+TGG | 0.299829 | tig0032878:-10504 | Msa1450320:intron |
| ACACCAGATTTGATCTTTAA+GGG | 0.313383 | tig0032878:-10717 | Msa1450320:intron |
| TACCAAAAGTTCTCTATTCA+TGG | 0.358136 | tig0032878:-9006 | Msa1450320:CDS |
| TGAGGATAGGGGTTTGAAGA+AGG | 0.369034 | tig0032878:+10846 | Msa1450330:CDS |
| TGTTTATATTTATGTTTATG+AGG | 0.370237 | tig0032878:+10828 | Msa1450330:CDS |
| CAACGATGAGTTGAAATTTG+TGG | 0.382898 | tig0032878:+9031 | None:intergenic |
| TTGCAGTTAGTGTGAGATAG+TGG | 0.386743 | tig0032878:+10930 | Msa1450330:intron |
| TATTTATGTTTATGAGGATA+GGG | 0.430449 | tig0032878:+10834 | Msa1450330:CDS |
| TTACCCTTAAAGATCAAATC+TGG | 0.433113 | tig0032878:+10714 | None:intergenic |
| CTTCTATGGATAGACAAATC+TGG | 0.438150 | tig0032878:-10490 | Msa1450320:exon |
| CATGGCAAAGACCTCACAAT+TGG | 0.442075 | tig0032878:-8988 | Msa1450320:CDS |
| GAAAACGAAAAGATAAGAAG+AGG | 0.442362 | tig0032878:+10880 | Msa1450330:CDS |
| TGGATAGACAAATCTGGCTA+TGG | 0.454461 | tig0032878:-10484 | Msa1450320:CDS |
| ATTTCAAATTTGACATACAT+TGG | 0.457961 | tig0032878:+8942 | None:intergenic |
| GATGAAGGAACGCACAGAAC+AGG | 0.465124 | tig0032878:-10453 | Msa1450320:intron |
| ATATTTATGTTTATGAGGAT+AGG | 0.489117 | tig0032878:+10833 | Msa1450330:CDS |
| TAGAGAAGACATGAATAAGC+TGG | 0.500230 | tig0032878:+8909 | None:intergenic |
| GGTTTGTTGTTGCTGTGGTT+AGG | 0.511102 | tig0032878:-10349 | Msa1450320:CDS |
| CAAATTTGACATACATTGGA+GGG | 0.513620 | tig0032878:+8946 | None:intergenic |
| GGATAGACAAATCTGGCTAT+GGG | 0.538535 | tig0032878:-10483 | Msa1450320:CDS |
| TCAAATTTGACATACATTGG+AGG | 0.539829 | tig0032878:+8945 | None:intergenic |
| TCTGTGGTTTGTTGTTGCTG+TGG | 0.545340 | tig0032878:-10354 | Msa1450320:CDS |
| ATTTATGTTTATGAGGATAG+GGG | 0.546756 | tig0032878:+10835 | Msa1450330:CDS |
| GCTATGGGAAAGAATGATGA+AGG | 0.551874 | tig0032878:-10468 | Msa1450320:CDS |
| AAAACGAAAAGATAAGAAGA+GGG | 0.559646 | tig0032878:+10881 | Msa1450330:CDS |
| TGCAGTTAGTGTGAGATAGT+GGG | 0.577153 | tig0032878:+10931 | Msa1450330:intron |
| ACATTGAGTTGATCATAAAG+AGG | 0.610727 | tig0032878:+8855 | None:intergenic |
| AACCACTCTCTTACTCTCTG+TGG | 0.633518 | tig0032878:-10370 | Msa1450320:CDS |
| AAGAATCTCAACCAATTGTG+AGG | 0.643130 | tig0032878:+8977 | None:intergenic |
| AACCACAGAGAGTAAGAGAG+TGG | 0.650013 | tig0032878:+10368 | None:intergenic |
| TGTAGATCAGTGTTGTACAA+TGG | 0.668222 | tig0032878:+10740 | None:intergenic |
| ATAAAGAAGAATGAAGAACT+CGG | 0.678421 | tig0032878:+10786 | None:intergenic |
| AATTGCTATAAATAATATGG+TGG | 0.695190 | tig0032878:-8814 | Msa1450320:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTCATCAATTTTT+TGG | - | tig0032878:8913-8932 | Msa1450320:CDS | 10.0% |
| !!! | TTTATTTTTCATCAATTTTT+TGG | - | tig0032878:8913-8932 | Msa1450320:CDS | 10.0% |
| !! | TGTTTATATTTATGTTTATG+AGG | + | tig0032878:8856-8875 | None:intergenic | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | + | tig0032878:9387-9406 | None:intergenic | 15.0% |
| !!! | CTATATTAACATTTTTTAGT+TGG | + | tig0032878:9634-9653 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+AGG | - | tig0032878:9776-9795 | Msa1450320:intron | 15.0% |
| !! | ATTCTTTAAATGAATTCTAA+GGG | - | tig0032878:9777-9796 | Msa1450320:intron | 15.0% |
| !! | TTTGAATTTCAAAATTATAG+TGG | + | tig0032878:10043-10062 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTCAATATATG+TGG | - | tig0032878:10468-10487 | Msa1450320:CDS | 15.0% |
| !! | TTAACATTTAAATGTGTTTA+TGG | - | tig0032878:10505-10524 | Msa1450320:intron | 15.0% |
| !! | TAACATTTAAATGTGTTTAT+GGG | - | tig0032878:10506-10525 | Msa1450320:intron | 15.0% |
| !! | TGTTTATATTTATGTTTATG+AGG | + | tig0032878:8856-8875 | None:intergenic | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | + | tig0032878:9387-9406 | None:intergenic | 15.0% |
| !!! | CTATATTAACATTTTTTAGT+TGG | + | tig0032878:9634-9653 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+AGG | - | tig0032878:9776-9795 | Msa1450320:intron | 15.0% |
| !! | ATTCTTTAAATGAATTCTAA+GGG | - | tig0032878:9777-9796 | Msa1450320:intron | 15.0% |
| !! | TTTGAATTTCAAAATTATAG+TGG | + | tig0032878:10043-10062 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTCAATATATG+TGG | - | tig0032878:10468-10487 | Msa1450320:CDS | 15.0% |
| !! | TTAACATTTAAATGTGTTTA+TGG | - | tig0032878:10505-10524 | Msa1450320:intron | 15.0% |
| !! | TAACATTTAAATGTGTTTAT+GGG | - | tig0032878:10506-10525 | Msa1450320:intron | 15.0% |
| !! | TATTTATGTTTATGAGGATA+GGG | + | tig0032878:8850-8869 | None:intergenic | 20.0% |
| !! | ATATTTATGTTTATGAGGAT+AGG | + | tig0032878:8851-8870 | None:intergenic | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | + | tig0032878:9271-9290 | None:intergenic | 20.0% |
| !! | TGAGTAAAAAAAACGAAATT+TGG | + | tig0032878:9277-9296 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | + | tig0032878:9376-9395 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | - | tig0032878:9376-9395 | Msa1450320:intron | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | + | tig0032878:9558-9577 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTAAG+GGG | - | tig0032878:9778-9797 | Msa1450320:intron | 20.0% |
| !! | GATAGTTAACAAAATTATAG+TGG | + | tig0032878:9975-9994 | None:intergenic | 20.0% |
| !! | ATTGTAATAAAAGAGGAAAT+AGG | + | tig0032878:10622-10641 | None:intergenic | 20.0% |
| !! | ATTTCAAATTTGACATACAT+TGG | + | tig0032878:10742-10761 | None:intergenic | 20.0% |
| !! | TGCAATTGCTATAAATAATA+TGG | - | tig0032878:10864-10883 | Msa1450320:five_prime_UTR | 20.0% |
| !! | AATTGCTATAAATAATATGG+TGG | - | tig0032878:10867-10886 | Msa1450320:five_prime_UTR | 20.0% |
| !! | AATTGAAAAATATTGCAACA+CGG | + | tig0032878:10900-10919 | Msa1450330:CDS | 20.0% |
| !! | TATTTATGTTTATGAGGATA+GGG | + | tig0032878:8850-8869 | None:intergenic | 20.0% |
| !! | ATATTTATGTTTATGAGGAT+AGG | + | tig0032878:8851-8870 | None:intergenic | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | + | tig0032878:9271-9290 | None:intergenic | 20.0% |
| !! | TGAGTAAAAAAAACGAAATT+TGG | + | tig0032878:9277-9296 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | + | tig0032878:9376-9395 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | - | tig0032878:9376-9395 | Msa1450320:intron | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | + | tig0032878:9558-9577 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTAAG+GGG | - | tig0032878:9778-9797 | Msa1450320:intron | 20.0% |
| !! | GATAGTTAACAAAATTATAG+TGG | + | tig0032878:9975-9994 | None:intergenic | 20.0% |
| !! | ATTGTAATAAAAGAGGAAAT+AGG | + | tig0032878:10622-10641 | None:intergenic | 20.0% |
| !! | ATTTCAAATTTGACATACAT+TGG | + | tig0032878:10742-10761 | None:intergenic | 20.0% |
| !! | TGCAATTGCTATAAATAATA+TGG | - | tig0032878:10864-10883 | Msa1450320:five_prime_UTR | 20.0% |
| !! | AATTGCTATAAATAATATGG+TGG | - | tig0032878:10867-10886 | Msa1450320:five_prime_UTR | 20.0% |
| !! | AATTGAAAAATATTGCAACA+CGG | + | tig0032878:10900-10919 | Msa1450330:CDS | 20.0% |
| ! | AAAACGAAAAGATAAGAAGA+GGG | + | tig0032878:8803-8822 | None:intergenic | 25.0% |
| ! | ATTTATGTTTATGAGGATAG+GGG | + | tig0032878:8849-8868 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAATGAAGAACT+CGG | + | tig0032878:8898-8917 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | - | tig0032878:9509-9528 | Msa1450320:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | + | tig0032878:9559-9578 | None:intergenic | 25.0% |
| !!! | TTTTGGAATAAGTTCATACA+AGG | - | tig0032878:9808-9827 | Msa1450320:intron | 25.0% |
| ! | AGTTAACAAAATTATAGTGG+AGG | + | tig0032878:9972-9991 | None:intergenic | 25.0% |
| !! | ATTTCAAAATTATAGTGGAG+AGG | + | tig0032878:10038-10057 | None:intergenic | 25.0% |
| ! | CTATGAGAAATAAAGATAGT+GGG | + | tig0032878:10072-10091 | None:intergenic | 25.0% |
| ! | ACTATGAGAAATAAAGATAG+TGG | + | tig0032878:10073-10092 | None:intergenic | 25.0% |
| ! | TGAAATTTGCAAACATGAAT+TGG | + | tig0032878:10116-10135 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAAACCACACAAT+TGG | + | tig0032878:10288-10307 | None:intergenic | 25.0% |
| !! | ATATGTAGCAAACCTTTTAA+TGG | - | tig0032878:10349-10368 | Msa1450320:CDS | 25.0% |
| ! | CACACATATTATCCATTAAA+AGG | + | tig0032878:10364-10383 | None:intergenic | 25.0% |
| ! | ACTAATGACTAAGATAGAAA+AGG | + | tig0032878:10425-10444 | None:intergenic | 25.0% |
| !!! | ATAGGTTGGTTTGTATATAT+TGG | + | tig0032878:10604-10623 | None:intergenic | 25.0% |
| ! | TAATAAAAGAGGAAATAGGT+TGG | + | tig0032878:10618-10637 | None:intergenic | 25.0% |
| !! | TCCTCTTTTATTACAATAAC+AGG | - | tig0032878:10625-10644 | Msa1450320:intron | 25.0% |
| !! | CCTCTTTTATTACAATAACA+GGG | - | tig0032878:10626-10645 | Msa1450320:intron | 25.0% |
| ! | AAAACGAAAAGATAAGAAGA+GGG | + | tig0032878:8803-8822 | None:intergenic | 25.0% |
| ! | ATTTATGTTTATGAGGATAG+GGG | + | tig0032878:8849-8868 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAATGAAGAACT+CGG | + | tig0032878:8898-8917 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | - | tig0032878:9509-9528 | Msa1450320:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | + | tig0032878:9559-9578 | None:intergenic | 25.0% |
| !!! | TTTTGGAATAAGTTCATACA+AGG | - | tig0032878:9808-9827 | Msa1450320:intron | 25.0% |
| ! | AGTTAACAAAATTATAGTGG+AGG | + | tig0032878:9972-9991 | None:intergenic | 25.0% |
| !! | ATTTCAAAATTATAGTGGAG+AGG | + | tig0032878:10038-10057 | None:intergenic | 25.0% |
| ! | CTATGAGAAATAAAGATAGT+GGG | + | tig0032878:10072-10091 | None:intergenic | 25.0% |
| ! | ACTATGAGAAATAAAGATAG+TGG | + | tig0032878:10073-10092 | None:intergenic | 25.0% |
| ! | TGAAATTTGCAAACATGAAT+TGG | + | tig0032878:10116-10135 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAAACCACACAAT+TGG | + | tig0032878:10288-10307 | None:intergenic | 25.0% |
| !! | ATATGTAGCAAACCTTTTAA+TGG | - | tig0032878:10349-10368 | Msa1450320:CDS | 25.0% |
| ! | CACACATATTATCCATTAAA+AGG | + | tig0032878:10364-10383 | None:intergenic | 25.0% |
| ! | ACTAATGACTAAGATAGAAA+AGG | + | tig0032878:10425-10444 | None:intergenic | 25.0% |
| !!! | ATAGGTTGGTTTGTATATAT+TGG | + | tig0032878:10604-10623 | None:intergenic | 25.0% |
| ! | TAATAAAAGAGGAAATAGGT+TGG | + | tig0032878:10618-10637 | None:intergenic | 25.0% |
| !! | TCCTCTTTTATTACAATAAC+AGG | - | tig0032878:10625-10644 | Msa1450320:intron | 25.0% |
| !! | CCTCTTTTATTACAATAACA+GGG | - | tig0032878:10626-10645 | Msa1450320:intron | 25.0% |
| GAAAACGAAAAGATAAGAAG+AGG | + | tig0032878:8804-8823 | None:intergenic | 30.0% | |
| AACACCAGATTTGATCTTTA+AGG | - | tig0032878:8963-8982 | Msa1450320:CDS | 30.0% | |
| ACACCAGATTTGATCTTTAA+GGG | - | tig0032878:8964-8983 | Msa1450320:CDS | 30.0% | |
| TTACCCTTAAAGATCAAATC+TGG | + | tig0032878:8970-8989 | None:intergenic | 30.0% | |
| GTGAGAGAAGAAAAAATAGA+GGG | + | tig0032878:9112-9131 | None:intergenic | 30.0% | |
| ATTCCAGTCACAAAATAACT+TGG | + | tig0032878:9472-9491 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACTGGAATTCAA+TGG | - | tig0032878:9476-9495 | Msa1450320:intron | 30.0% |
| AATGAAGCAACTAAACAATG+AGG | - | tig0032878:9596-9615 | Msa1450320:intron | 30.0% | |
| !!! | TTTTTAGTTGGCATAAACCA+AGG | + | tig0032878:9622-9641 | None:intergenic | 30.0% |
| !! | TTACTTACTTAAGAGCATCA+AGG | + | tig0032878:9725-9744 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGTAACTCACAT+AGG | + | tig0032878:10325-10344 | None:intergenic | 30.0% |
| ! | AAAGGAATACCTTTTCATAG+AGG | + | tig0032878:10407-10426 | None:intergenic | 30.0% |
| TATTGGAAAGATTCACTTGA+TGG | + | tig0032878:10587-10606 | None:intergenic | 30.0% | |
| CCCTGTTATTGTAATAAAAG+AGG | + | tig0032878:10629-10648 | None:intergenic | 30.0% | |
| TACCAAAAGTTCTCTATTCA+TGG | - | tig0032878:10675-10694 | Msa1450320:intron | 30.0% | |
| CAAATTTGACATACATTGGA+GGG | + | tig0032878:10738-10757 | None:intergenic | 30.0% | |
| TCAAATTTGACATACATTGG+AGG | + | tig0032878:10739-10758 | None:intergenic | 30.0% | |
| !! | ACATTGAGTTGATCATAAAG+AGG | + | tig0032878:10829-10848 | Msa1450330:CDS | 30.0% |
| GAAAACGAAAAGATAAGAAG+AGG | + | tig0032878:8804-8823 | None:intergenic | 30.0% | |
| AACACCAGATTTGATCTTTA+AGG | - | tig0032878:8963-8982 | Msa1450320:CDS | 30.0% | |
| ACACCAGATTTGATCTTTAA+GGG | - | tig0032878:8964-8983 | Msa1450320:CDS | 30.0% | |
| TTACCCTTAAAGATCAAATC+TGG | + | tig0032878:8970-8989 | None:intergenic | 30.0% | |
| GTGAGAGAAGAAAAAATAGA+GGG | + | tig0032878:9112-9131 | None:intergenic | 30.0% | |
| ATTCCAGTCACAAAATAACT+TGG | + | tig0032878:9472-9491 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACTGGAATTCAA+TGG | - | tig0032878:9476-9495 | Msa1450320:intron | 30.0% |
| AATGAAGCAACTAAACAATG+AGG | - | tig0032878:9596-9615 | Msa1450320:intron | 30.0% | |
| !!! | TTTTTAGTTGGCATAAACCA+AGG | + | tig0032878:9622-9641 | None:intergenic | 30.0% |
| !! | TTACTTACTTAAGAGCATCA+AGG | + | tig0032878:9725-9744 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGTAACTCACAT+AGG | + | tig0032878:10325-10344 | None:intergenic | 30.0% |
| ! | AAAGGAATACCTTTTCATAG+AGG | + | tig0032878:10407-10426 | None:intergenic | 30.0% |
| TATTGGAAAGATTCACTTGA+TGG | + | tig0032878:10587-10606 | None:intergenic | 30.0% | |
| CCCTGTTATTGTAATAAAAG+AGG | + | tig0032878:10629-10648 | None:intergenic | 30.0% | |
| TACCAAAAGTTCTCTATTCA+TGG | - | tig0032878:10675-10694 | Msa1450320:intron | 30.0% | |
| CAAATTTGACATACATTGGA+GGG | + | tig0032878:10738-10757 | None:intergenic | 30.0% | |
| TCAAATTTGACATACATTGG+AGG | + | tig0032878:10739-10758 | None:intergenic | 30.0% | |
| !! | ACATTGAGTTGATCATAAAG+AGG | + | tig0032878:10829-10848 | Msa1450330:CDS | 30.0% |
| TGTAGATCAGTGTTGTACAA+TGG | + | tig0032878:8944-8963 | None:intergenic | 35.0% | |
| CGTGAGAGAAGAAAAAATAG+AGG | + | tig0032878:9113-9132 | None:intergenic | 35.0% | |
| TTCAGATCGATGTTCTTCTA+TGG | - | tig0032878:9177-9196 | Msa1450320:intron | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | - | tig0032878:9191-9210 | Msa1450320:intron | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | + | tig0032878:9366-9385 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+TGG | - | tig0032878:9466-9485 | Msa1450320:intron | 35.0% |
| !! | TTCTAAGGGGCTTAAGTTTT+TGG | - | tig0032878:9791-9810 | Msa1450320:intron | 35.0% |
| ATATGTACTTTGACTGCACA+TGG | - | tig0032878:10142-10161 | Msa1450320:intron | 35.0% | |
| ATGGATAATATGTGTGCTCT+AGG | - | tig0032878:10368-10387 | Msa1450320:CDS | 35.0% | |
| ! | CAACGATGAGTTGAAATTTG+TGG | + | tig0032878:10653-10672 | None:intergenic | 35.0% |
| ! | TGCCATGAATAGAGAACTTT+TGG | + | tig0032878:10680-10699 | None:intergenic | 35.0% |
| AAGAATCTCAACCAATTGTG+AGG | + | tig0032878:10707-10726 | None:intergenic | 35.0% | |
| TAGAGAAGACATGAATAAGC+TGG | + | tig0032878:10775-10794 | None:intergenic | 35.0% | |
| TGTAGATCAGTGTTGTACAA+TGG | + | tig0032878:8944-8963 | None:intergenic | 35.0% | |
| CGTGAGAGAAGAAAAAATAG+AGG | + | tig0032878:9113-9132 | None:intergenic | 35.0% | |
| TTCAGATCGATGTTCTTCTA+TGG | - | tig0032878:9177-9196 | Msa1450320:intron | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | - | tig0032878:9191-9210 | Msa1450320:intron | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | + | tig0032878:9366-9385 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+TGG | - | tig0032878:9466-9485 | Msa1450320:intron | 35.0% |
| !! | TTCTAAGGGGCTTAAGTTTT+TGG | - | tig0032878:9791-9810 | Msa1450320:intron | 35.0% |
| ATATGTACTTTGACTGCACA+TGG | - | tig0032878:10142-10161 | Msa1450320:intron | 35.0% | |
| ATGGATAATATGTGTGCTCT+AGG | - | tig0032878:10368-10387 | Msa1450320:CDS | 35.0% | |
| ! | CAACGATGAGTTGAAATTTG+TGG | + | tig0032878:10653-10672 | None:intergenic | 35.0% |
| ! | TGCCATGAATAGAGAACTTT+TGG | + | tig0032878:10680-10699 | None:intergenic | 35.0% |
| AAGAATCTCAACCAATTGTG+AGG | + | tig0032878:10707-10726 | None:intergenic | 35.0% | |
| TAGAGAAGACATGAATAAGC+TGG | + | tig0032878:10775-10794 | None:intergenic | 35.0% | |
| TTGCAGTTAGTGTGAGATAG+TGG | + | tig0032878:8754-8773 | None:intergenic | 40.0% | |
| GAGAGATAAGCTATAACCAG+TGG | + | tig0032878:9090-9109 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | - | tig0032878:9197-9216 | Msa1450320:intron | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | - | tig0032878:9198-9217 | Msa1450320:intron | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | - | tig0032878:9213-9232 | Msa1450320:intron | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | - | tig0032878:9675-9694 | Msa1450320:intron | 40.0% |
| TGGATGGGGAAATTAACATG+TGG | - | tig0032878:9695-9714 | Msa1450320:intron | 40.0% | |
| TGGGGAAATTAACATGTGGT+TGG | - | tig0032878:9699-9718 | Msa1450320:intron | 40.0% | |
| GTGAAAGTAAAAGCCGTTAG+AGG | - | tig0032878:10261-10280 | Msa1450320:intron | 40.0% | |
| TTGCAGTTAGTGTGAGATAG+TGG | + | tig0032878:8754-8773 | None:intergenic | 40.0% | |
| GAGAGATAAGCTATAACCAG+TGG | + | tig0032878:9090-9109 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | - | tig0032878:9197-9216 | Msa1450320:intron | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | - | tig0032878:9198-9217 | Msa1450320:intron | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | - | tig0032878:9213-9232 | Msa1450320:intron | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | - | tig0032878:9675-9694 | Msa1450320:intron | 40.0% |
| TGGATGGGGAAATTAACATG+TGG | - | tig0032878:9695-9714 | Msa1450320:intron | 40.0% | |
| TGGGGAAATTAACATGTGGT+TGG | - | tig0032878:9699-9718 | Msa1450320:intron | 40.0% | |
| GTGAAAGTAAAAGCCGTTAG+AGG | - | tig0032878:10261-10280 | Msa1450320:intron | 40.0% | |
| TGAGGATAGGGGTTTGAAGA+AGG | + | tig0032878:8838-8857 | None:intergenic | 45.0% | |
| AATTCCTCCCTCTTTCCGAT+TGG | - | tig0032878:9038-9057 | Msa1450320:intron | 45.0% | |
| ! | GTTGGTTCCAATCGGAAAGA+GGG | + | tig0032878:9048-9067 | None:intergenic | 45.0% |
| ! | AGTTGGTTCCAATCGGAAAG+AGG | + | tig0032878:9049-9068 | None:intergenic | 45.0% |
| CTATAACCAGTGGAACACGA+TGG | + | tig0032878:9080-9099 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTG+TGG | - | tig0032878:9311-9330 | Msa1450320:intron | 45.0% | |
| AACCACAGAGAGTAAGAGAG+TGG | + | tig0032878:9316-9335 | None:intergenic | 45.0% | |
| !! | TCTGTGGTTTGTTGTTGCTG+TGG | - | tig0032878:9327-9346 | Msa1450320:intron | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | - | tig0032878:9332-9351 | Msa1450320:intron | 45.0% |
| GCAACTAAACAATGAGGCCT+TGG | - | tig0032878:9602-9621 | Msa1450320:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | - | tig0032878:9680-9699 | Msa1450320:intron | 45.0% | |
| AGCCTCAACATGTATGGATG+GGG | - | tig0032878:9681-9700 | Msa1450320:intron | 45.0% | |
| TTCCCCATCCATACATGTTG+AGG | + | tig0032878:9686-9705 | None:intergenic | 45.0% | |
| CCACACAATTGGACCTCTAA+CGG | + | tig0032878:10277-10296 | None:intergenic | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | - | tig0032878:10379-10398 | Msa1450320:CDS | 45.0% |
| TCCACGGTACCTCTATGAAA+AGG | - | tig0032878:10395-10414 | Msa1450320:intron | 45.0% | |
| !!! | ACCTTTTCATAGAGGTACCG+TGG | + | tig0032878:10399-10418 | None:intergenic | 45.0% |
| GGTAAGTCTGCAGGGATAAA+GGG | + | tig0032878:10566-10585 | None:intergenic | 45.0% | |
| TGGTAAGTCTGCAGGGATAA+AGG | + | tig0032878:10567-10586 | None:intergenic | 45.0% | |
| ! | CACTTGATGGTAAGTCTGCA+GGG | + | tig0032878:10574-10593 | None:intergenic | 45.0% |
| ! | TCACTTGATGGTAAGTCTGC+AGG | + | tig0032878:10575-10594 | None:intergenic | 45.0% |
| CATGGCAAAGACCTCACAAT+TGG | - | tig0032878:10693-10712 | Msa1450320:intron | 45.0% | |
| TGAGGATAGGGGTTTGAAGA+AGG | + | tig0032878:8838-8857 | None:intergenic | 45.0% | |
| AATTCCTCCCTCTTTCCGAT+TGG | - | tig0032878:9038-9057 | Msa1450320:intron | 45.0% | |
| ! | GTTGGTTCCAATCGGAAAGA+GGG | + | tig0032878:9048-9067 | None:intergenic | 45.0% |
| ! | AGTTGGTTCCAATCGGAAAG+AGG | + | tig0032878:9049-9068 | None:intergenic | 45.0% |
| CTATAACCAGTGGAACACGA+TGG | + | tig0032878:9080-9099 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTG+TGG | - | tig0032878:9311-9330 | Msa1450320:intron | 45.0% | |
| AACCACAGAGAGTAAGAGAG+TGG | + | tig0032878:9316-9335 | None:intergenic | 45.0% | |
| !! | TCTGTGGTTTGTTGTTGCTG+TGG | - | tig0032878:9327-9346 | Msa1450320:intron | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | - | tig0032878:9332-9351 | Msa1450320:intron | 45.0% |
| GCAACTAAACAATGAGGCCT+TGG | - | tig0032878:9602-9621 | Msa1450320:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | - | tig0032878:9680-9699 | Msa1450320:intron | 45.0% | |
| AGCCTCAACATGTATGGATG+GGG | - | tig0032878:9681-9700 | Msa1450320:intron | 45.0% | |
| TTCCCCATCCATACATGTTG+AGG | + | tig0032878:9686-9705 | None:intergenic | 45.0% | |
| CCACACAATTGGACCTCTAA+CGG | + | tig0032878:10277-10296 | None:intergenic | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | - | tig0032878:10379-10398 | Msa1450320:CDS | 45.0% |
| TCCACGGTACCTCTATGAAA+AGG | - | tig0032878:10395-10414 | Msa1450320:intron | 45.0% | |
| !!! | ACCTTTTCATAGAGGTACCG+TGG | + | tig0032878:10399-10418 | None:intergenic | 45.0% |
| GGTAAGTCTGCAGGGATAAA+GGG | + | tig0032878:10566-10585 | None:intergenic | 45.0% | |
| TGGTAAGTCTGCAGGGATAA+AGG | + | tig0032878:10567-10586 | None:intergenic | 45.0% | |
| ! | CACTTGATGGTAAGTCTGCA+GGG | + | tig0032878:10574-10593 | None:intergenic | 45.0% |
| ! | TCACTTGATGGTAAGTCTGC+AGG | + | tig0032878:10575-10594 | None:intergenic | 45.0% |
| CATGGCAAAGACCTCACAAT+TGG | - | tig0032878:10693-10712 | Msa1450320:intron | 45.0% | |
| !!! | TTTTTTTTTTTTATCAATTT+TGG | + | tig0032878:10201-10220 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTATCAATTT+TGG | + | tig0032878:10201-10220 | None:intergenic | 5.0% |
| !! | GGTGGTGAGTTGGTTCCAAT+CGG | + | tig0032878:9056-9075 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | + | tig0032878:9077-9096 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | - | tig0032878:9228-9247 | Msa1450320:intron | 50.0% | |
| !! | ACAGAACAGGTAGCGGAAGT+AGG | - | tig0032878:9241-9260 | Msa1450320:intron | 50.0% |
| GCAGCCTCAACATGTATGGA+TGG | - | tig0032878:9679-9698 | Msa1450320:intron | 50.0% | |
| CCGTTAGAGGTCCAATTGTG+TGG | - | tig0032878:10274-10293 | Msa1450320:intron | 50.0% | |
| !! | GGTGGTGAGTTGGTTCCAAT+CGG | + | tig0032878:9056-9075 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | + | tig0032878:9077-9096 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | - | tig0032878:9228-9247 | Msa1450320:intron | 50.0% | |
| !! | ACAGAACAGGTAGCGGAAGT+AGG | - | tig0032878:9241-9260 | Msa1450320:intron | 50.0% |
| GCAGCCTCAACATGTATGGA+TGG | - | tig0032878:9679-9698 | Msa1450320:intron | 50.0% | |
| CCGTTAGAGGTCCAATTGTG+TGG | - | tig0032878:10274-10293 | Msa1450320:intron | 50.0% | |
| GGTTCCAATCGGAAAGAGGG+AGG | + | tig0032878:9045-9064 | None:intergenic | 55.0% | |
| !! | ACACGATGGTGGTGGTGAGT+TGG | + | tig0032878:9066-9085 | None:intergenic | 55.0% |
| GGAACGCACAGAACAGGTAG+CGG | - | tig0032878:9234-9253 | Msa1450320:intron | 55.0% | |
| GGTTCCAATCGGAAAGAGGG+AGG | + | tig0032878:9045-9064 | None:intergenic | 55.0% | |
| !! | ACACGATGGTGGTGGTGAGT+TGG | + | tig0032878:9066-9085 | None:intergenic | 55.0% |
| GGAACGCACAGAACAGGTAG+CGG | - | tig0032878:9234-9253 | Msa1450320:intron | 55.0% | |
| ! | CCAGTGGAACACGATGGTGG+TGG | + | tig0032878:9074-9093 | None:intergenic | 60.0% |
| CCACCACCATCGTGTTCCAC+TGG | - | tig0032878:9071-9090 | Msa1450320:intron | 60.0% | |
| ! | CCAGTGGAACACGATGGTGG+TGG | + | tig0032878:9074-9093 | None:intergenic | 60.0% |
| CCACCACCATCGTGTTCCAC+TGG | - | tig0032878:9071-9090 | Msa1450320:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032878 | gene | 8751 | 10952 | 8751 | ID=Msa1450320;Name=Msa1450320 |
| tig0032878 | mRNA | 8751 | 10952 | 8751 | ID=Msa1450320-mRNA-1;Parent=Msa1450320;Name=Msa1450320-mRNA-1;_AED=0.31;_eAED=0.31;_QI=249|0.33|0.75|1|0|0|4|142|103 |
| tig0032878 | exon | 8751 | 9056 | 8751 | ID=Msa1450320-mRNA-1:exon:17434;Parent=Msa1450320-mRNA-1 |
| tig0032878 | exon | 10306 | 10399 | 10306 | ID=Msa1450320-mRNA-1:exon:17433;Parent=Msa1450320-mRNA-1 |
| tig0032878 | exon | 10454 | 10521 | 10454 | ID=Msa1450320-mRNA-1:exon:17432;Parent=Msa1450320-mRNA-1 |
| tig0032878 | exon | 10718 | 10952 | 10718 | ID=Msa1450320-mRNA-1:exon:17431;Parent=Msa1450320-mRNA-1 |
| tig0032878 | five_prime_UTR | 10718 | 10952 | 10718 | ID=Msa1450320-mRNA-1:five_prime_utr;Parent=Msa1450320-mRNA-1 |
| tig0032878 | five_prime_UTR | 10508 | 10521 | 10508 | ID=Msa1450320-mRNA-1:five_prime_utr;Parent=Msa1450320-mRNA-1 |
| tig0032878 | CDS | 10454 | 10507 | 10454 | ID=Msa1450320-mRNA-1:cds;Parent=Msa1450320-mRNA-1 |
| tig0032878 | CDS | 10306 | 10399 | 10306 | ID=Msa1450320-mRNA-1:cds;Parent=Msa1450320-mRNA-1 |
| tig0032878 | CDS | 8893 | 9056 | 8893 | ID=Msa1450320-mRNA-1:cds;Parent=Msa1450320-mRNA-1 |
| tig0032878 | three_prime_UTR | 8751 | 8892 | 8751 | ID=Msa1450320-mRNA-1:three_prime_utr;Parent=Msa1450320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
