Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657670 | Msa1180880 | 0.802647 | 5.079973e-49 | -8.615850e-47 |
| Msa1180880 | Msa1205130 | 0.817613 | 3.010774e-52 | -8.615850e-47 |
| Msa1180880 | Msa1231410 | 0.901791 | 1.873592e-78 | -8.615850e-47 |
| Msa1180880 | Msa1312680 | 0.820620 | 6.230125e-53 | -8.615850e-47 |
| Msa1180880 | Msa1411070 | 0.842671 | 2.243161e-58 | -8.615850e-47 |
| Msa1180880 | Msa1450320 | 0.914924 | 1.081887e-84 | -8.615850e-47 |
| Msa0853540 | Msa1180880 | 0.827971 | 1.165072e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACCAGATTTGATCTTTA+AGG | 0.097101 | 8_1:+15109745 | Msa1180880:five_prime_UTR |
| TGCCATGAATAGAGAACTTT+TGG | 0.267971 | 8_1:-15111463 | None:intergenic |
| TGCAATTGCTATAAATAATA+TGG | 0.292591 | 8_1:+15111650 | Msa1180880:three_prime_UTR |
| TTCAGATCGATGTTCTTCTA+TGG | 0.299829 | 8_1:+15109959 | Msa1180880:intron |
| ACACCAGATTTGATCTTTAA+GGG | 0.313383 | 8_1:+15109746 | Msa1180880:five_prime_UTR |
| TACCAAAAGTTCTCTATTCA+TGG | 0.358136 | 8_1:+15111461 | Msa1180880:CDS |
| TGAGGATAGGGGTTTGAAGA+AGG | 0.369034 | 8_1:-15109616 | None:intergenic |
| TGTTTATATTTATGTTTATG+AGG | 0.370237 | 8_1:-15109634 | None:intergenic |
| CAACGATGAGTTGAAATTTG+TGG | 0.382898 | 8_1:-15111436 | None:intergenic |
| TTGCAGTTAGTGTGAGATAG+TGG | 0.386743 | 8_1:-15109532 | None:intergenic |
| TATTTATGTTTATGAGGATA+GGG | 0.430449 | 8_1:-15109628 | None:intergenic |
| TTACCCTTAAAGATCAAATC+TGG | 0.433113 | 8_1:-15109749 | None:intergenic |
| CTTCTATGGATAGACAAATC+TGG | 0.438150 | 8_1:+15109973 | Msa1180880:exon |
| CATGGCAAAGACCTCACAAT+TGG | 0.442075 | 8_1:+15111479 | Msa1180880:CDS |
| GAAAACGAAAAGATAAGAAG+AGG | 0.442362 | 8_1:-15109582 | None:intergenic |
| TGGATAGACAAATCTGGCTA+TGG | 0.454461 | 8_1:+15109979 | Msa1180880:CDS |
| ATTTCAAATTTGACATACAT+TGG | 0.457961 | 8_1:-15111525 | None:intergenic |
| GATGAAGGAACGCACAGAAC+AGG | 0.465124 | 8_1:+15110010 | Msa1180880:CDS |
| ATATTTATGTTTATGAGGAT+AGG | 0.489117 | 8_1:-15109629 | None:intergenic |
| TAGAGAAGACATGAATAAGC+TGG | 0.500230 | 8_1:-15111558 | None:intergenic |
| GGTTTGTTGTTGCTGTGGTT+AGG | 0.511102 | 8_1:+15110114 | Msa1180880:CDS |
| CAAATTTGACATACATTGGA+GGG | 0.513620 | 8_1:-15111521 | None:intergenic |
| GGATAGACAAATCTGGCTAT+GGG | 0.538535 | 8_1:+15109980 | Msa1180880:CDS |
| TCAAATTTGACATACATTGG+AGG | 0.539829 | 8_1:-15111522 | None:intergenic |
| TCTGTGGTTTGTTGTTGCTG+TGG | 0.545340 | 8_1:+15110109 | Msa1180880:CDS |
| ATTTATGTTTATGAGGATAG+GGG | 0.546756 | 8_1:-15109627 | None:intergenic |
| GCTATGGGAAAGAATGATGA+AGG | 0.551874 | 8_1:+15109995 | Msa1180880:CDS |
| AAAACGAAAAGATAAGAAGA+GGG | 0.559646 | 8_1:-15109581 | None:intergenic |
| TGCAGTTAGTGTGAGATAGT+GGG | 0.577153 | 8_1:-15109531 | None:intergenic |
| ACATTGAGTTGATCATAAAG+AGG | 0.610727 | 8_1:-15111612 | None:intergenic |
| AACCACTCTCTTACTCTCTG+TGG | 0.633518 | 8_1:+15110093 | Msa1180880:CDS |
| AAGAATCTCAACCAATTGTG+AGG | 0.643130 | 8_1:-15111490 | None:intergenic |
| AACCACAGAGAGTAAGAGAG+TGG | 0.650013 | 8_1:-15110095 | None:intergenic |
| TGTAGATCAGTGTTGTACAA+TGG | 0.668222 | 8_1:-15109723 | None:intergenic |
| ATAAAGAAGAATGAAGAACT+CGG | 0.678421 | 8_1:-15109676 | None:intergenic |
| AATTGCTATAAATAATATGG+TGG | 0.695190 | 8_1:+15111653 | Msa1180880:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTCATCAATTTTTT+TGG | + | chr8_1:15109695-15109714 | Msa1180880:five_prime_UTR | 10.0% |
| !!! | TTATTTTTCATCAATTTTTT+TGG | + | chr8_1:15109695-15109714 | Msa1180880:five_prime_UTR | 10.0% |
| !! | TGTTTATATTTATGTTTATG+AGG | - | chr8_1:15109637-15109656 | None:intergenic | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | - | chr8_1:15110169-15110188 | None:intergenic | 15.0% |
| !!! | CTATATTAACATTTTTTAGT+TGG | - | chr8_1:15110419-15110438 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+AGG | + | chr8_1:15110561-15110580 | Msa1180880:intron | 15.0% |
| !! | ATTCTTTAAATGAATTCTAA+GGG | + | chr8_1:15110562-15110581 | Msa1180880:intron | 15.0% |
| !! | TTTGAATTTCAAAATTATAG+TGG | - | chr8_1:15110828-15110847 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTCAATATATG+TGG | + | chr8_1:15111254-15111273 | Msa1180880:intron | 15.0% |
| !! | TGTTTATATTTATGTTTATG+AGG | - | chr8_1:15109637-15109656 | None:intergenic | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | - | chr8_1:15110169-15110188 | None:intergenic | 15.0% |
| !!! | CTATATTAACATTTTTTAGT+TGG | - | chr8_1:15110419-15110438 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+AGG | + | chr8_1:15110561-15110580 | Msa1180880:intron | 15.0% |
| !! | ATTCTTTAAATGAATTCTAA+GGG | + | chr8_1:15110562-15110581 | Msa1180880:intron | 15.0% |
| !! | TTTGAATTTCAAAATTATAG+TGG | - | chr8_1:15110828-15110847 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTCAATATATG+TGG | + | chr8_1:15111254-15111273 | Msa1180880:intron | 15.0% |
| !! | TATTTATGTTTATGAGGATA+GGG | - | chr8_1:15109631-15109650 | None:intergenic | 20.0% |
| !! | ATATTTATGTTTATGAGGAT+AGG | - | chr8_1:15109632-15109651 | None:intergenic | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | - | chr8_1:15110053-15110072 | None:intergenic | 20.0% |
| !! | TGAGTAAAAAAAACGAAATT+TGG | - | chr8_1:15110059-15110078 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | - | chr8_1:15110158-15110177 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | + | chr8_1:15110158-15110177 | Msa1180880:CDS | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | - | chr8_1:15110343-15110362 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTAAG+GGG | + | chr8_1:15110563-15110582 | Msa1180880:intron | 20.0% |
| !! | GATAGTTAACAAAATTATAG+TGG | - | chr8_1:15110760-15110779 | None:intergenic | 20.0% |
| !! | ATTGTAATAAAAGAGGAAAT+AGG | - | chr8_1:15111408-15111427 | None:intergenic | 20.0% |
| !! | ATTTCAAATTTGACATACAT+TGG | - | chr8_1:15111528-15111547 | None:intergenic | 20.0% |
| !! | TGCAATTGCTATAAATAATA+TGG | + | chr8_1:15111650-15111669 | Msa1180880:three_prime_UTR | 20.0% |
| !! | AATTGCTATAAATAATATGG+TGG | + | chr8_1:15111653-15111672 | Msa1180880:three_prime_UTR | 20.0% |
| !! | AATTGAAAAATATTGCAACA+CGG | - | chr8_1:15111686-15111705 | None:intergenic | 20.0% |
| !! | TATTTATGTTTATGAGGATA+GGG | - | chr8_1:15109631-15109650 | None:intergenic | 20.0% |
| !! | ATATTTATGTTTATGAGGAT+AGG | - | chr8_1:15109632-15109651 | None:intergenic | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | - | chr8_1:15110053-15110072 | None:intergenic | 20.0% |
| !! | TGAGTAAAAAAAACGAAATT+TGG | - | chr8_1:15110059-15110078 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | - | chr8_1:15110158-15110177 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | + | chr8_1:15110158-15110177 | Msa1180880:CDS | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | - | chr8_1:15110343-15110362 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTAAG+GGG | + | chr8_1:15110563-15110582 | Msa1180880:intron | 20.0% |
| !! | GATAGTTAACAAAATTATAG+TGG | - | chr8_1:15110760-15110779 | None:intergenic | 20.0% |
| !! | ATTGTAATAAAAGAGGAAAT+AGG | - | chr8_1:15111408-15111427 | None:intergenic | 20.0% |
| !! | ATTTCAAATTTGACATACAT+TGG | - | chr8_1:15111528-15111547 | None:intergenic | 20.0% |
| !! | TGCAATTGCTATAAATAATA+TGG | + | chr8_1:15111650-15111669 | Msa1180880:three_prime_UTR | 20.0% |
| !! | AATTGCTATAAATAATATGG+TGG | + | chr8_1:15111653-15111672 | Msa1180880:three_prime_UTR | 20.0% |
| !! | AATTGAAAAATATTGCAACA+CGG | - | chr8_1:15111686-15111705 | None:intergenic | 20.0% |
| ! | AAAACGAAAAGATAAGAAGA+GGG | - | chr8_1:15109584-15109603 | None:intergenic | 25.0% |
| ! | ATTTATGTTTATGAGGATAG+GGG | - | chr8_1:15109630-15109649 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAATGAAGAACT+CGG | - | chr8_1:15109679-15109698 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | + | chr8_1:15110291-15110310 | Msa1180880:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | - | chr8_1:15110344-15110363 | None:intergenic | 25.0% |
| ! | AGTTAACAAAATTATAGTGG+AGG | - | chr8_1:15110757-15110776 | None:intergenic | 25.0% |
| !! | ATTTCAAAATTATAGTGGAG+AGG | - | chr8_1:15110823-15110842 | None:intergenic | 25.0% |
| ! | CTATGAGAAATAAAGATAGT+GGG | - | chr8_1:15110857-15110876 | None:intergenic | 25.0% |
| ! | ACTATGAGAAATAAAGATAG+TGG | - | chr8_1:15110858-15110877 | None:intergenic | 25.0% |
| ! | TGAAATTTGCAAACATGAAT+TGG | - | chr8_1:15110901-15110920 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAAACCACACAAT+TGG | - | chr8_1:15111074-15111093 | None:intergenic | 25.0% |
| !! | ATATGTAGCAAACCTTTTAA+TGG | + | chr8_1:15111135-15111154 | Msa1180880:intron | 25.0% |
| ! | CACACATATTATCCATTAAA+AGG | - | chr8_1:15111150-15111169 | None:intergenic | 25.0% |
| ! | ACTAATGACTAAGATAGAAA+AGG | - | chr8_1:15111211-15111230 | None:intergenic | 25.0% |
| !!! | ATAGGTTGGTTTGTATATAT+TGG | - | chr8_1:15111390-15111409 | None:intergenic | 25.0% |
| ! | TAATAAAAGAGGAAATAGGT+TGG | - | chr8_1:15111404-15111423 | None:intergenic | 25.0% |
| !! | TCCTCTTTTATTACAATAAC+AGG | + | chr8_1:15111411-15111430 | Msa1180880:intron | 25.0% |
| !! | CCTCTTTTATTACAATAACA+GGG | + | chr8_1:15111412-15111431 | Msa1180880:intron | 25.0% |
| ! | AAAACGAAAAGATAAGAAGA+GGG | - | chr8_1:15109584-15109603 | None:intergenic | 25.0% |
| ! | ATTTATGTTTATGAGGATAG+GGG | - | chr8_1:15109630-15109649 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAATGAAGAACT+CGG | - | chr8_1:15109679-15109698 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | + | chr8_1:15110291-15110310 | Msa1180880:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | - | chr8_1:15110344-15110363 | None:intergenic | 25.0% |
| ! | AGTTAACAAAATTATAGTGG+AGG | - | chr8_1:15110757-15110776 | None:intergenic | 25.0% |
| !! | ATTTCAAAATTATAGTGGAG+AGG | - | chr8_1:15110823-15110842 | None:intergenic | 25.0% |
| ! | CTATGAGAAATAAAGATAGT+GGG | - | chr8_1:15110857-15110876 | None:intergenic | 25.0% |
| ! | ACTATGAGAAATAAAGATAG+TGG | - | chr8_1:15110858-15110877 | None:intergenic | 25.0% |
| ! | TGAAATTTGCAAACATGAAT+TGG | - | chr8_1:15110901-15110920 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAAACCACACAAT+TGG | - | chr8_1:15111074-15111093 | None:intergenic | 25.0% |
| !! | ATATGTAGCAAACCTTTTAA+TGG | + | chr8_1:15111135-15111154 | Msa1180880:intron | 25.0% |
| ! | CACACATATTATCCATTAAA+AGG | - | chr8_1:15111150-15111169 | None:intergenic | 25.0% |
| ! | ACTAATGACTAAGATAGAAA+AGG | - | chr8_1:15111211-15111230 | None:intergenic | 25.0% |
| !!! | ATAGGTTGGTTTGTATATAT+TGG | - | chr8_1:15111390-15111409 | None:intergenic | 25.0% |
| ! | TAATAAAAGAGGAAATAGGT+TGG | - | chr8_1:15111404-15111423 | None:intergenic | 25.0% |
| !! | TCCTCTTTTATTACAATAAC+AGG | + | chr8_1:15111411-15111430 | Msa1180880:intron | 25.0% |
| !! | CCTCTTTTATTACAATAACA+GGG | + | chr8_1:15111412-15111431 | Msa1180880:intron | 25.0% |
| GAAAACGAAAAGATAAGAAG+AGG | - | chr8_1:15109585-15109604 | None:intergenic | 30.0% | |
| AACACCAGATTTGATCTTTA+AGG | + | chr8_1:15109745-15109764 | Msa1180880:five_prime_UTR | 30.0% | |
| ACACCAGATTTGATCTTTAA+GGG | + | chr8_1:15109746-15109765 | Msa1180880:five_prime_UTR | 30.0% | |
| TTACCCTTAAAGATCAAATC+TGG | - | chr8_1:15109752-15109771 | None:intergenic | 30.0% | |
| GTGAGAGAAGAAAAAATAGA+GGG | - | chr8_1:15109893-15109912 | None:intergenic | 30.0% | |
| ATTCCAGTCACAAAATAACT+TGG | - | chr8_1:15110254-15110273 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACTGGAATTCAA+TGG | + | chr8_1:15110258-15110277 | Msa1180880:intron | 30.0% |
| AATGAAGCAACTAAACAATG+AGG | + | chr8_1:15110381-15110400 | Msa1180880:intron | 30.0% | |
| !!! | TTTTTAGTTGGCATAAACCA+AGG | - | chr8_1:15110407-15110426 | None:intergenic | 30.0% |
| !! | TTACTTACTTAAGAGCATCA+AGG | - | chr8_1:15110510-15110529 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGTAACTCACAT+AGG | - | chr8_1:15111111-15111130 | None:intergenic | 30.0% |
| ! | AAAGGAATACCTTTTCATAG+AGG | - | chr8_1:15111193-15111212 | None:intergenic | 30.0% |
| TATTGGAAAGATTCACTTGA+TGG | - | chr8_1:15111373-15111392 | None:intergenic | 30.0% | |
| CCCTGTTATTGTAATAAAAG+AGG | - | chr8_1:15111415-15111434 | None:intergenic | 30.0% | |
| TACCAAAAGTTCTCTATTCA+TGG | + | chr8_1:15111461-15111480 | Msa1180880:CDS | 30.0% | |
| CAAATTTGACATACATTGGA+GGG | - | chr8_1:15111524-15111543 | None:intergenic | 30.0% | |
| TCAAATTTGACATACATTGG+AGG | - | chr8_1:15111525-15111544 | None:intergenic | 30.0% | |
| !! | ACATTGAGTTGATCATAAAG+AGG | - | chr8_1:15111615-15111634 | None:intergenic | 30.0% |
| GAAAACGAAAAGATAAGAAG+AGG | - | chr8_1:15109585-15109604 | None:intergenic | 30.0% | |
| AACACCAGATTTGATCTTTA+AGG | + | chr8_1:15109745-15109764 | Msa1180880:five_prime_UTR | 30.0% | |
| ACACCAGATTTGATCTTTAA+GGG | + | chr8_1:15109746-15109765 | Msa1180880:five_prime_UTR | 30.0% | |
| TTACCCTTAAAGATCAAATC+TGG | - | chr8_1:15109752-15109771 | None:intergenic | 30.0% | |
| GTGAGAGAAGAAAAAATAGA+GGG | - | chr8_1:15109893-15109912 | None:intergenic | 30.0% | |
| ATTCCAGTCACAAAATAACT+TGG | - | chr8_1:15110254-15110273 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACTGGAATTCAA+TGG | + | chr8_1:15110258-15110277 | Msa1180880:intron | 30.0% |
| AATGAAGCAACTAAACAATG+AGG | + | chr8_1:15110381-15110400 | Msa1180880:intron | 30.0% | |
| !!! | TTTTTAGTTGGCATAAACCA+AGG | - | chr8_1:15110407-15110426 | None:intergenic | 30.0% |
| !! | TTACTTACTTAAGAGCATCA+AGG | - | chr8_1:15110510-15110529 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGTAACTCACAT+AGG | - | chr8_1:15111111-15111130 | None:intergenic | 30.0% |
| ! | AAAGGAATACCTTTTCATAG+AGG | - | chr8_1:15111193-15111212 | None:intergenic | 30.0% |
| TATTGGAAAGATTCACTTGA+TGG | - | chr8_1:15111373-15111392 | None:intergenic | 30.0% | |
| CCCTGTTATTGTAATAAAAG+AGG | - | chr8_1:15111415-15111434 | None:intergenic | 30.0% | |
| TACCAAAAGTTCTCTATTCA+TGG | + | chr8_1:15111461-15111480 | Msa1180880:CDS | 30.0% | |
| CAAATTTGACATACATTGGA+GGG | - | chr8_1:15111524-15111543 | None:intergenic | 30.0% | |
| TCAAATTTGACATACATTGG+AGG | - | chr8_1:15111525-15111544 | None:intergenic | 30.0% | |
| !! | ACATTGAGTTGATCATAAAG+AGG | - | chr8_1:15111615-15111634 | None:intergenic | 30.0% |
| TGTAGATCAGTGTTGTACAA+TGG | - | chr8_1:15109726-15109745 | None:intergenic | 35.0% | |
| CGTGAGAGAAGAAAAAATAG+AGG | - | chr8_1:15109894-15109913 | None:intergenic | 35.0% | |
| TTCAGATCGATGTTCTTCTA+TGG | + | chr8_1:15109959-15109978 | Msa1180880:intron | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | + | chr8_1:15109973-15109992 | Msa1180880:exon | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | - | chr8_1:15110148-15110167 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+TGG | + | chr8_1:15110248-15110267 | Msa1180880:intron | 35.0% |
| !! | TTCTAAGGGGCTTAAGTTTT+TGG | + | chr8_1:15110576-15110595 | Msa1180880:intron | 35.0% |
| ATGGATAATATGTGTGCTCT+AGG | + | chr8_1:15111154-15111173 | Msa1180880:intron | 35.0% | |
| ! | CAACGATGAGTTGAAATTTG+TGG | - | chr8_1:15111439-15111458 | None:intergenic | 35.0% |
| ! | TGCCATGAATAGAGAACTTT+TGG | - | chr8_1:15111466-15111485 | None:intergenic | 35.0% |
| AAGAATCTCAACCAATTGTG+AGG | - | chr8_1:15111493-15111512 | None:intergenic | 35.0% | |
| TAGAGAAGACATGAATAAGC+TGG | - | chr8_1:15111561-15111580 | None:intergenic | 35.0% | |
| TGTAGATCAGTGTTGTACAA+TGG | - | chr8_1:15109726-15109745 | None:intergenic | 35.0% | |
| CGTGAGAGAAGAAAAAATAG+AGG | - | chr8_1:15109894-15109913 | None:intergenic | 35.0% | |
| TTCAGATCGATGTTCTTCTA+TGG | + | chr8_1:15109959-15109978 | Msa1180880:intron | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | + | chr8_1:15109973-15109992 | Msa1180880:exon | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | - | chr8_1:15110148-15110167 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+TGG | + | chr8_1:15110248-15110267 | Msa1180880:intron | 35.0% |
| !! | TTCTAAGGGGCTTAAGTTTT+TGG | + | chr8_1:15110576-15110595 | Msa1180880:intron | 35.0% |
| ATGGATAATATGTGTGCTCT+AGG | + | chr8_1:15111154-15111173 | Msa1180880:intron | 35.0% | |
| ! | CAACGATGAGTTGAAATTTG+TGG | - | chr8_1:15111439-15111458 | None:intergenic | 35.0% |
| ! | TGCCATGAATAGAGAACTTT+TGG | - | chr8_1:15111466-15111485 | None:intergenic | 35.0% |
| AAGAATCTCAACCAATTGTG+AGG | - | chr8_1:15111493-15111512 | None:intergenic | 35.0% | |
| TAGAGAAGACATGAATAAGC+TGG | - | chr8_1:15111561-15111580 | None:intergenic | 35.0% | |
| TTGCAGTTAGTGTGAGATAG+TGG | - | chr8_1:15109535-15109554 | None:intergenic | 40.0% | |
| GAGAGATAAGCTATAACCAG+TGG | - | chr8_1:15109871-15109890 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | + | chr8_1:15109979-15109998 | Msa1180880:CDS | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | + | chr8_1:15109980-15109999 | Msa1180880:CDS | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | + | chr8_1:15109995-15110014 | Msa1180880:CDS | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | + | chr8_1:15110460-15110479 | Msa1180880:intron | 40.0% |
| TGGATGGGGAAATTAACATG+TGG | + | chr8_1:15110480-15110499 | Msa1180880:intron | 40.0% | |
| TGGGGAAATTAACATGTGGT+TGG | + | chr8_1:15110484-15110503 | Msa1180880:intron | 40.0% | |
| ATATGTGCTTTGACTGCACA+TGG | + | chr8_1:15110927-15110946 | Msa1180880:intron | 40.0% | |
| GTGAAAGTAAAAGCCGTTAG+AGG | + | chr8_1:15111047-15111066 | Msa1180880:intron | 40.0% | |
| TTGCAGTTAGTGTGAGATAG+TGG | - | chr8_1:15109535-15109554 | None:intergenic | 40.0% | |
| GAGAGATAAGCTATAACCAG+TGG | - | chr8_1:15109871-15109890 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | + | chr8_1:15109979-15109998 | Msa1180880:CDS | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | + | chr8_1:15109980-15109999 | Msa1180880:CDS | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | + | chr8_1:15109995-15110014 | Msa1180880:CDS | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | + | chr8_1:15110460-15110479 | Msa1180880:intron | 40.0% |
| TGGATGGGGAAATTAACATG+TGG | + | chr8_1:15110480-15110499 | Msa1180880:intron | 40.0% | |
| TGGGGAAATTAACATGTGGT+TGG | + | chr8_1:15110484-15110503 | Msa1180880:intron | 40.0% | |
| ATATGTGCTTTGACTGCACA+TGG | + | chr8_1:15110927-15110946 | Msa1180880:intron | 40.0% | |
| GTGAAAGTAAAAGCCGTTAG+AGG | + | chr8_1:15111047-15111066 | Msa1180880:intron | 40.0% | |
| TGAGGATAGGGGTTTGAAGA+AGG | - | chr8_1:15109619-15109638 | None:intergenic | 45.0% | |
| TATTCCTCCCTCTTTCCGAT+TGG | + | chr8_1:15109819-15109838 | Msa1180880:intron | 45.0% | |
| ! | GTTGGTTCCAATCGGAAAGA+GGG | - | chr8_1:15109829-15109848 | None:intergenic | 45.0% |
| ! | AGTTGGTTCCAATCGGAAAG+AGG | - | chr8_1:15109830-15109849 | None:intergenic | 45.0% |
| CTATAACCAGTGGAACACGA+TGG | - | chr8_1:15109861-15109880 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTG+TGG | + | chr8_1:15110093-15110112 | Msa1180880:CDS | 45.0% | |
| AACCACAGAGAGTAAGAGAG+TGG | - | chr8_1:15110098-15110117 | None:intergenic | 45.0% | |
| !! | TCTGTGGTTTGTTGTTGCTG+TGG | + | chr8_1:15110109-15110128 | Msa1180880:CDS | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | + | chr8_1:15110114-15110133 | Msa1180880:CDS | 45.0% |
| GCAACTAAACAATGAGGCCT+TGG | + | chr8_1:15110387-15110406 | Msa1180880:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | + | chr8_1:15110465-15110484 | Msa1180880:intron | 45.0% | |
| AGCCTCAACATGTATGGATG+GGG | + | chr8_1:15110466-15110485 | Msa1180880:intron | 45.0% | |
| TTCCCCATCCATACATGTTG+AGG | - | chr8_1:15110471-15110490 | None:intergenic | 45.0% | |
| CCACACAATTGGACCTCTAA+CGG | - | chr8_1:15111063-15111082 | None:intergenic | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | + | chr8_1:15111165-15111184 | Msa1180880:intron | 45.0% |
| TCCACGGTACCTCTATGAAA+AGG | + | chr8_1:15111181-15111200 | Msa1180880:intron | 45.0% | |
| !!! | ACCTTTTCATAGAGGTACCG+TGG | - | chr8_1:15111185-15111204 | None:intergenic | 45.0% |
| GGTAAGTCTGCAGGGATAAA+GGG | - | chr8_1:15111352-15111371 | None:intergenic | 45.0% | |
| TGGTAAGTCTGCAGGGATAA+AGG | - | chr8_1:15111353-15111372 | None:intergenic | 45.0% | |
| ! | CACTTGATGGTAAGTCTGCA+GGG | - | chr8_1:15111360-15111379 | None:intergenic | 45.0% |
| ! | TCACTTGATGGTAAGTCTGC+AGG | - | chr8_1:15111361-15111380 | None:intergenic | 45.0% |
| CATGGCAAAGACCTCACAAT+TGG | + | chr8_1:15111479-15111498 | Msa1180880:CDS | 45.0% | |
| TGAGGATAGGGGTTTGAAGA+AGG | - | chr8_1:15109619-15109638 | None:intergenic | 45.0% | |
| TATTCCTCCCTCTTTCCGAT+TGG | + | chr8_1:15109819-15109838 | Msa1180880:intron | 45.0% | |
| ! | GTTGGTTCCAATCGGAAAGA+GGG | - | chr8_1:15109829-15109848 | None:intergenic | 45.0% |
| ! | AGTTGGTTCCAATCGGAAAG+AGG | - | chr8_1:15109830-15109849 | None:intergenic | 45.0% |
| CTATAACCAGTGGAACACGA+TGG | - | chr8_1:15109861-15109880 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTG+TGG | + | chr8_1:15110093-15110112 | Msa1180880:CDS | 45.0% | |
| AACCACAGAGAGTAAGAGAG+TGG | - | chr8_1:15110098-15110117 | None:intergenic | 45.0% | |
| !! | TCTGTGGTTTGTTGTTGCTG+TGG | + | chr8_1:15110109-15110128 | Msa1180880:CDS | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | + | chr8_1:15110114-15110133 | Msa1180880:CDS | 45.0% |
| GCAACTAAACAATGAGGCCT+TGG | + | chr8_1:15110387-15110406 | Msa1180880:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | + | chr8_1:15110465-15110484 | Msa1180880:intron | 45.0% | |
| AGCCTCAACATGTATGGATG+GGG | + | chr8_1:15110466-15110485 | Msa1180880:intron | 45.0% | |
| TTCCCCATCCATACATGTTG+AGG | - | chr8_1:15110471-15110490 | None:intergenic | 45.0% | |
| CCACACAATTGGACCTCTAA+CGG | - | chr8_1:15111063-15111082 | None:intergenic | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | + | chr8_1:15111165-15111184 | Msa1180880:intron | 45.0% |
| TCCACGGTACCTCTATGAAA+AGG | + | chr8_1:15111181-15111200 | Msa1180880:intron | 45.0% | |
| !!! | ACCTTTTCATAGAGGTACCG+TGG | - | chr8_1:15111185-15111204 | None:intergenic | 45.0% |
| GGTAAGTCTGCAGGGATAAA+GGG | - | chr8_1:15111352-15111371 | None:intergenic | 45.0% | |
| TGGTAAGTCTGCAGGGATAA+AGG | - | chr8_1:15111353-15111372 | None:intergenic | 45.0% | |
| ! | CACTTGATGGTAAGTCTGCA+GGG | - | chr8_1:15111360-15111379 | None:intergenic | 45.0% |
| ! | TCACTTGATGGTAAGTCTGC+AGG | - | chr8_1:15111361-15111380 | None:intergenic | 45.0% |
| CATGGCAAAGACCTCACAAT+TGG | + | chr8_1:15111479-15111498 | Msa1180880:CDS | 45.0% | |
| !!! | TTTTTTTTTTTTATCAATTT+TGG | - | chr8_1:15110986-15111005 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTATCAATTT+TGG | - | chr8_1:15110986-15111005 | None:intergenic | 5.0% |
| !! | GGTGGTGAGTTGGTTCCAAT+CGG | - | chr8_1:15109837-15109856 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | - | chr8_1:15109858-15109877 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | + | chr8_1:15110010-15110029 | Msa1180880:CDS | 50.0% | |
| !! | ACAGAACAGGTAGCGGAAGT+AGG | + | chr8_1:15110023-15110042 | Msa1180880:intron | 50.0% |
| GCAGCCTCAACATGTATGGA+TGG | + | chr8_1:15110464-15110483 | Msa1180880:intron | 50.0% | |
| CCGTTAGAGGTCCAATTGTG+TGG | + | chr8_1:15111060-15111079 | Msa1180880:intron | 50.0% | |
| !! | GGTGGTGAGTTGGTTCCAAT+CGG | - | chr8_1:15109837-15109856 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | - | chr8_1:15109858-15109877 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | + | chr8_1:15110010-15110029 | Msa1180880:CDS | 50.0% | |
| !! | ACAGAACAGGTAGCGGAAGT+AGG | + | chr8_1:15110023-15110042 | Msa1180880:intron | 50.0% |
| GCAGCCTCAACATGTATGGA+TGG | + | chr8_1:15110464-15110483 | Msa1180880:intron | 50.0% | |
| CCGTTAGAGGTCCAATTGTG+TGG | + | chr8_1:15111060-15111079 | Msa1180880:intron | 50.0% | |
| GGTTCCAATCGGAAAGAGGG+AGG | - | chr8_1:15109826-15109845 | None:intergenic | 55.0% | |
| !! | ACACGATGGTGGTGGTGAGT+TGG | - | chr8_1:15109847-15109866 | None:intergenic | 55.0% |
| GGAACGCACAGAACAGGTAG+CGG | + | chr8_1:15110016-15110035 | Msa1180880:intron | 55.0% | |
| GGTTCCAATCGGAAAGAGGG+AGG | - | chr8_1:15109826-15109845 | None:intergenic | 55.0% | |
| !! | ACACGATGGTGGTGGTGAGT+TGG | - | chr8_1:15109847-15109866 | None:intergenic | 55.0% |
| GGAACGCACAGAACAGGTAG+CGG | + | chr8_1:15110016-15110035 | Msa1180880:intron | 55.0% | |
| ! | CCAGTGGAACACGATGGTGG+TGG | - | chr8_1:15109855-15109874 | None:intergenic | 60.0% |
| CCACCACCATCGTGTTCCAC+TGG | + | chr8_1:15109852-15109871 | Msa1180880:intron | 60.0% | |
| ! | CCAGTGGAACACGATGGTGG+TGG | - | chr8_1:15109855-15109874 | None:intergenic | 60.0% |
| CCACCACCATCGTGTTCCAC+TGG | + | chr8_1:15109852-15109871 | Msa1180880:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 15109532 | 15111738 | 15109532 | ID=Msa1180880;Name=Msa1180880 |
| chr8_1 | mRNA | 15109532 | 15111738 | 15109532 | ID=Msa1180880-mRNA-1;Parent=Msa1180880;Name=Msa1180880-mRNA-1;_AED=0.31;_eAED=0.31;_QI=250|0.33|0.75|1|0|0|4|142|103 |
| chr8_1 | exon | 15109532 | 15109767 | 15109532 | ID=Msa1180880-mRNA-1:exon:5681;Parent=Msa1180880-mRNA-1 |
| chr8_1 | exon | 15109964 | 15110031 | 15109964 | ID=Msa1180880-mRNA-1:exon:5682;Parent=Msa1180880-mRNA-1 |
| chr8_1 | exon | 15110086 | 15110179 | 15110086 | ID=Msa1180880-mRNA-1:exon:5683;Parent=Msa1180880-mRNA-1 |
| chr8_1 | exon | 15111433 | 15111738 | 15111433 | ID=Msa1180880-mRNA-1:exon:5684;Parent=Msa1180880-mRNA-1 |
| chr8_1 | five_prime_UTR | 15109532 | 15109767 | 15109532 | ID=Msa1180880-mRNA-1:five_prime_utr;Parent=Msa1180880-mRNA-1 |
| chr8_1 | five_prime_UTR | 15109964 | 15109977 | 15109964 | ID=Msa1180880-mRNA-1:five_prime_utr;Parent=Msa1180880-mRNA-1 |
| chr8_1 | CDS | 15109978 | 15110031 | 15109978 | ID=Msa1180880-mRNA-1:cds;Parent=Msa1180880-mRNA-1 |
| chr8_1 | CDS | 15110086 | 15110179 | 15110086 | ID=Msa1180880-mRNA-1:cds;Parent=Msa1180880-mRNA-1 |
| chr8_1 | CDS | 15111433 | 15111596 | 15111433 | ID=Msa1180880-mRNA-1:cds;Parent=Msa1180880-mRNA-1 |
| chr8_1 | three_prime_UTR | 15111597 | 15111738 | 15111597 | ID=Msa1180880-mRNA-1:three_prime_utr;Parent=Msa1180880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
