Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232890 | XP_013444321.1 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.12e-72 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232890 | I3S856 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.01e-72 | 220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1232890 | Msa1313440 | 0.975844 | 1.054879e-140 | -8.615850e-47 |
| Msa0526100 | Msa1232890 | 0.800010 | 1.761554e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232890 | MtrunA17_Chr8g0342041 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.95e-76 | 220 |
| Msa1232890 | MtrunA17_Chr8g0387721 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 3.18e-75 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232890 | AT5G55140.1 | 64.762 | 105 | 36 | 1 | 3 | 106 | 1 | 105 | 6.71e-46 | 144 |
Find 59 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATATAGTAAATTATTCT+AGG | 0.238978 | 8_2:+9492451 | None:intergenic |
| AACTCTAGTGAGGGGTATTC+CGG | 0.253922 | 8_2:-9492988 | Msa1232890:CDS |
| ATATAAATGCTTGTTTCTTA+AGG | 0.294228 | 8_2:-9492435 | Msa1232890:three_prime_UTR |
| CCTTGTAATGTTTGCTGACA+TGG | 0.351671 | 8_2:-9492644 | Msa1232890:three_prime_UTR |
| CACTAGAGTTATATAAAGAT+TGG | 0.372018 | 8_2:+9493001 | None:intergenic |
| TGTATTTGATATAGGTTAAG+AGG | 0.379656 | 8_2:-9492785 | Msa1232890:intron |
| GAAACAACTTATAATCTAGT+TGG | 0.382896 | 8_2:-9492413 | Msa1232890:three_prime_UTR |
| TCAACCTGCTTCTTCTGCTT+AGG | 0.384301 | 8_2:-9492670 | Msa1232890:exon |
| CAACCTGCTTCTTCTGCTTA+GGG | 0.390606 | 8_2:-9492669 | Msa1232890:exon |
| CATGAGCATGAATGCGTTCA+AGG | 0.398457 | 8_2:-9493057 | Msa1232890:CDS |
| GATGGAACACACCTACTGTT+AGG | 0.400025 | 8_2:-9492896 | Msa1232890:CDS |
| GTTTGAGGCTGTGCCTCATA+TGG | 0.403158 | 8_2:-9492589 | Msa1232890:three_prime_UTR |
| ACTCTAGTGAGGGGTATTCC+GGG | 0.407993 | 8_2:-9492987 | Msa1232890:CDS |
| AGATTGGGGCTATAAGCAAT+TGG | 0.415456 | 8_2:+9493017 | None:intergenic |
| AAACAACTTATAATCTAGTT+GGG | 0.418471 | 8_2:-9492412 | Msa1232890:three_prime_UTR |
| ACTAGAGTTATATAAAGATT+GGG | 0.420712 | 8_2:+9493002 | None:intergenic |
| AGAAAGTTTCTCACTGTTTG+TGG | 0.430411 | 8_2:+9495244 | None:intergenic |
| GATGCAACACTAGTCAATTT+AGG | 0.430691 | 8_2:-9492505 | Msa1232890:three_prime_UTR |
| AAGCAGAAGAAGCAGGTTGA+TGG | 0.435151 | 8_2:+9492673 | None:intergenic |
| TGAGGCACAGCCTCAAACTT+TGG | 0.439856 | 8_2:+9492594 | None:intergenic |
| AGTGCGCCTATGTTGCTTCC+TGG | 0.448328 | 8_2:+9492962 | None:intergenic |
| CAATGCAAATAAACCATATG+AGG | 0.450473 | 8_2:+9492576 | None:intergenic |
| CTATGTTGCTTCCTGGTCCC+CGG | 0.462046 | 8_2:+9492969 | None:intergenic |
| ATGGAACACACCTACTGTTA+GGG | 0.464145 | 8_2:-9492895 | Msa1232890:CDS |
| GTACAAGGCCCGCAAAGAAA+AGG | 0.493013 | 8_2:-9492736 | Msa1232890:CDS |
| GATTGGGGCTATAAGCAATT+GGG | 0.504706 | 8_2:+9493018 | None:intergenic |
| CGGGGACCAGGAAGCAACAT+AGG | 0.508472 | 8_2:-9492968 | Msa1232890:CDS |
| TGTTCCATCGCATGACAGTT+CGG | 0.511917 | 8_2:+9492910 | None:intergenic |
| CCATGTCAGCAAACATTACA+AGG | 0.512547 | 8_2:+9492644 | None:intergenic |
| GAAGCAACATAGGCGCACTT+TGG | 0.520220 | 8_2:-9492958 | Msa1232890:CDS |
| TGAGGGGTATTCCGGGGACC+AGG | 0.527749 | 8_2:-9492980 | Msa1232890:CDS |
| CCGAGCTCTTCGTCCTCCGT+TGG | 0.538228 | 8_2:-9492703 | Msa1232890:CDS |
| CGGAGGACGAAGAGCTCGGT+GGG | 0.539550 | 8_2:+9492707 | None:intergenic |
| CTTGAACGCATTCATGCTCA+TGG | 0.548540 | 8_2:+9493058 | None:intergenic |
| GTACCCTAAGCAGAAGAAGC+AGG | 0.555500 | 8_2:+9492666 | None:intergenic |
| GTGCTTTGCTGCACCGTCGA+CGG | 0.564260 | 8_2:+9495312 | None:intergenic |
| GCTAGTTGTTGTTGAGACAG+AGG | 0.564385 | 8_2:-9492763 | Msa1232890:CDS |
| CAGTTCTCTCTCTCCGTCGA+CGG | 0.568181 | 8_2:-9495325 | Msa1232890:five_prime_UTR |
| TGTTAGGGGAATGATCCAGC+AGG | 0.585091 | 8_2:-9492880 | Msa1232890:intron |
| GCTATAAGCAATTGGGACAC+AGG | 0.590348 | 8_2:+9493025 | None:intergenic |
| GCAAAGCACTCCATTCTAGC+CGG | 0.590680 | 8_2:-9495298 | Msa1232890:five_prime_UTR |
| GGTTGATGGTTTATGACCAA+CGG | 0.595496 | 8_2:+9492687 | None:intergenic |
| TCTTTATATAACTCTAGTGA+GGG | 0.599888 | 8_2:-9492997 | Msa1232890:CDS |
| GCAACCGAACTGTCATGCGA+TGG | 0.602415 | 8_2:-9492914 | Msa1232890:CDS |
| AATATTCTATTTAAAGACAG+AGG | 0.604664 | 8_2:+9492374 | None:intergenic |
| GGTTGAACTCTATACAGTAT+CGG | 0.607947 | 8_2:-9495368 | None:intergenic |
| CTAGAGTTATATAAAGATTG+GGG | 0.610839 | 8_2:+9493003 | None:intergenic |
| ATCTTTATATAACTCTAGTG+AGG | 0.616129 | 8_2:-9492998 | Msa1232890:CDS |
| TGGATCATTCCCCTAACAGT+AGG | 0.620579 | 8_2:+9492885 | None:intergenic |
| AAGTTTCTCACTGTTTGTGG+CGG | 0.625247 | 8_2:+9495247 | None:intergenic |
| CAAGGCCCGCAAAGAAAAGG+AGG | 0.626844 | 8_2:-9492733 | Msa1232890:CDS |
| CCAACGGAGGACGAAGAGCT+CGG | 0.633862 | 8_2:+9492703 | None:intergenic |
| TGAGACAGAGGAGATGTACA+AGG | 0.642473 | 8_2:-9492751 | Msa1232890:CDS |
| TGGAACACACCTACTGTTAG+GGG | 0.654422 | 8_2:-9492894 | Msa1232890:CDS |
| CTCTAGTGAGGGGTATTCCG+GGG | 0.659985 | 8_2:-9492986 | Msa1232890:CDS |
| ACTTTGGAAGCACTACGTCT+CGG | 0.676793 | 8_2:-9492942 | Msa1232890:CDS |
| ACGGAGGACGAAGAGCTCGG+TGG | 0.687356 | 8_2:+9492706 | None:intergenic |
| CTTTATATAACTCTAGTGAG+GGG | 0.705279 | 8_2:-9492996 | Msa1232890:CDS |
| TGATGGTTTATGACCAACGG+AGG | 0.718299 | 8_2:+9492690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATATACATACTAAA+AGG | + | chr8_2:9494160-9494179 | None:intergenic | 10.0% |
| !!! | TTTTAGTATGTATATAAATA+TGG | - | chr8_2:9494159-9494178 | Msa1232890:intron | 10.0% |
| !! | TTTATATAGTAAATTATTCT+AGG | + | chr8_2:9495214-9495233 | None:intergenic | 10.0% |
| !!! | TTAATTTTGTAAATTAGAAC+TGG | + | chr8_2:9492760-9492779 | None:intergenic | 15.0% |
| !!! | TGATATTTGAACTTATTTTT+TGG | + | chr8_2:9493192-9493211 | None:intergenic | 15.0% |
| !!! | TTTAAGATCAAATATATGAA+TGG | + | chr8_2:9493544-9493563 | None:intergenic | 15.0% |
| !! | AAATACAACTTCTATATATT+TGG | - | chr8_2:9494520-9494539 | Msa1232890:intron | 15.0% |
| !! | ACATTCATATATGAGTAATT+AGG | + | chr8_2:9492616-9492635 | None:intergenic | 20.0% |
| !! | TACAAATTTGACAAAGAATT+TGG | + | chr8_2:9492819-9492838 | None:intergenic | 20.0% |
| !! | TTGTATCAAAATGTCATTAA+TGG | - | chr8_2:9492834-9492853 | Msa1232890:intron | 20.0% |
| !! | AAACAAGAAAAAGAAAAACT+AGG | - | chr8_2:9492878-9492897 | Msa1232890:intron | 20.0% |
| !! | AAATAAGTTCAAATATCATC+AGG | - | chr8_2:9493194-9493213 | Msa1232890:intron | 20.0% |
| !! | AGGAAAAATAATCAAACAAA+GGG | + | chr8_2:9493265-9493284 | None:intergenic | 20.0% |
| !! | TAGGAAAAATAATCAAACAA+AGG | + | chr8_2:9493266-9493285 | None:intergenic | 20.0% |
| !! | TTATTCTTAGTTCATTACTT+GGG | - | chr8_2:9493942-9493961 | Msa1232890:intron | 20.0% |
| !!! | TTTTTTTTACAATAAGCTGA+TGG | + | chr8_2:9494265-9494284 | None:intergenic | 20.0% |
| !! | ACTAGAGTTATATAAAGATT+GGG | + | chr8_2:9494663-9494682 | None:intergenic | 20.0% |
| !!! | ATATAAATGCTTGTTTCTTA+AGG | - | chr8_2:9495227-9495246 | Msa1232890:intron | 20.0% |
| !! | AAACAACTTATAATCTAGTT+GGG | - | chr8_2:9495250-9495269 | Msa1232890:intron | 20.0% |
| !! | AATATTCTATTTAAAGACAG+AGG | + | chr8_2:9495291-9495310 | None:intergenic | 20.0% |
| !! | ATCACATGAAATAAAAAAGT+TGG | - | chr8_2:9495322-9495341 | Msa1232890:five_prime_UTR | 20.0% |
| ! | ACAAAGAATGCAATTAAAAC+AGG | + | chr8_2:9492657-9492676 | None:intergenic | 25.0% |
| !! | ATTCAAGTTATCACTGAATA+AGG | - | chr8_2:9492687-9492706 | Msa1232890:CDS | 25.0% |
| !! | TTCAAGTTATCACTGAATAA+GGG | - | chr8_2:9492688-9492707 | Msa1232890:CDS | 25.0% |
| ! | GTCATTAATGGAATAATGAT+AGG | - | chr8_2:9492846-9492865 | Msa1232890:intron | 25.0% |
| !!! | AACTTATTTTTTGGTAAAGC+AGG | + | chr8_2:9493183-9493202 | None:intergenic | 25.0% |
| !! | GTGCTATGTTTTATATCTTT+TGG | + | chr8_2:9493499-9493518 | None:intergenic | 25.0% |
| ! | TGTAGAAATCTCAATATTGA+GGG | - | chr8_2:9493568-9493587 | Msa1232890:intron | 25.0% |
| ! | CTTATTCTTAGTTCATTACT+TGG | - | chr8_2:9493941-9493960 | Msa1232890:intron | 25.0% |
| !!! | TTTTGTTGTGCTATTATTCT+GGG | - | chr8_2:9494028-9494047 | Msa1232890:intron | 25.0% |
| ! | ATTATTATGAAGCATGAATC+AGG | + | chr8_2:9494135-9494154 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGATTTTGCGTC+TGG | - | chr8_2:9494364-9494383 | Msa1232890:intron | 25.0% |
| ! | AAATTGAAAGGCAATAGATT+GGG | + | chr8_2:9494447-9494466 | None:intergenic | 25.0% |
| ! | AAAATTGAAAGGCAATAGAT+TGG | + | chr8_2:9494448-9494467 | None:intergenic | 25.0% |
| ! | CTAGAGTTATATAAAGATTG+GGG | + | chr8_2:9494662-9494681 | None:intergenic | 25.0% |
| ! | CACTAGAGTTATATAAAGAT+TGG | + | chr8_2:9494664-9494683 | None:intergenic | 25.0% |
| ! | ATCTTTATATAACTCTAGTG+AGG | - | chr8_2:9494664-9494683 | Msa1232890:intron | 25.0% |
| ! | TCTTTATATAACTCTAGTGA+GGG | - | chr8_2:9494665-9494684 | Msa1232890:intron | 25.0% |
| ! | GCAAACTTTGTATTTGATAT+AGG | - | chr8_2:9494869-9494888 | Msa1232890:intron | 25.0% |
| ! | TGTATTTGATATAGGTTAAG+AGG | - | chr8_2:9494877-9494896 | Msa1232890:intron | 25.0% |
| ! | GAAACAACTTATAATCTAGT+TGG | - | chr8_2:9495249-9495268 | Msa1232890:intron | 25.0% |
| CTATATGCAAATGGAAAAAG+TGG | + | chr8_2:9493426-9493445 | None:intergenic | 30.0% | |
| GTGTAGAAATCTCAATATTG+AGG | - | chr8_2:9493567-9493586 | Msa1232890:intron | 30.0% | |
| GTAGAAATCTCAATATTGAG+GGG | - | chr8_2:9493569-9493588 | Msa1232890:intron | 30.0% | |
| ! | CATAACAGTTTAAGGTGTTT+CGG | - | chr8_2:9493597-9493616 | Msa1232890:intron | 30.0% |
| CAAGTTATGCTTGAATTAGA+TGG | - | chr8_2:9493974-9493993 | Msa1232890:intron | 30.0% | |
| ! | TGAAGTGACTTTAGTTTAGT+GGG | - | chr8_2:9494005-9494024 | Msa1232890:intron | 30.0% |
| !! | GTTTTGTTGTGCTATTATTC+TGG | - | chr8_2:9494027-9494046 | Msa1232890:intron | 30.0% |
| ! | AATATGGTTGAGCATTTTTC+AGG | - | chr8_2:9494175-9494194 | Msa1232890:intron | 30.0% |
| !!! | ATTCATCAGCTGTCATTTTT+CGG | - | chr8_2:9494292-9494311 | Msa1232890:intron | 30.0% |
| AAAGCATAGTAGCAACAAAA+TGG | - | chr8_2:9494387-9494406 | Msa1232890:intron | 30.0% | |
| ! | CAAAATGGAGTGGTTTATTT+TGG | - | chr8_2:9494402-9494421 | Msa1232890:intron | 30.0% |
| CTTTATATAACTCTAGTGAG+GGG | - | chr8_2:9494666-9494685 | Msa1232890:intron | 30.0% | |
| ! | GCAGATATGTCTTTTCAAAA+TGG | + | chr8_2:9494830-9494849 | None:intergenic | 30.0% |
| ! | TTTTCAAATGCCAAAGTTTG+AGG | - | chr8_2:9495058-9495077 | Msa1232890:intron | 30.0% |
| CAATGCAAATAAACCATATG+AGG | + | chr8_2:9495089-9495108 | None:intergenic | 30.0% | |
| AGAAAGTTTCTCACTGTTTG+TGG | + | chr8_2:9492421-9492440 | None:intergenic | 35.0% | |
| TTATGGTAGCAAATCGCATT+GGG | + | chr8_2:9492497-9492516 | None:intergenic | 35.0% | |
| ATTATGGTAGCAAATCGCAT+TGG | + | chr8_2:9492498-9492517 | None:intergenic | 35.0% | |
| GTTGACAGCTTAATGCAATT+TGG | + | chr8_2:9492793-9492812 | None:intergenic | 35.0% | |
| AGAAAAACTAGGCTTACGAA+TGG | - | chr8_2:9492889-9492908 | Msa1232890:CDS | 35.0% | |
| TATCATCAACCAACATGTGT+TGG | - | chr8_2:9493007-9493026 | Msa1232890:CDS | 35.0% | |
| ! | CTTGAGTTCTTTTAAGCAAG+AGG | - | chr8_2:9493046-9493065 | Msa1232890:CDS | 35.0% |
| ! | CCAACAGAATTTGCTCTATT+CGG | + | chr8_2:9493095-9493114 | None:intergenic | 35.0% |
| TAATCCCTCGAAATACTGTT+GGG | + | chr8_2:9493135-9493154 | None:intergenic | 35.0% | |
| TTAATCCCTCGAAATACTGT+TGG | + | chr8_2:9493136-9493155 | None:intergenic | 35.0% | |
| TTCCTAATAACCACCCTAAA+TGG | - | chr8_2:9493280-9493299 | Msa1232890:intron | 35.0% | |
| AAGGGAGAAAACTCCATTTA+GGG | + | chr8_2:9493296-9493315 | None:intergenic | 35.0% | |
| TAAGGGAGAAAACTCCATTT+AGG | + | chr8_2:9493297-9493316 | None:intergenic | 35.0% | |
| ACTATGATGTAAGAGGAGTA+TGG | + | chr8_2:9493324-9493343 | None:intergenic | 35.0% | |
| GGTATCTACTATGATGTAAG+AGG | + | chr8_2:9493331-9493350 | None:intergenic | 35.0% | |
| TCCATTTGCATATAGTAACC+AGG | - | chr8_2:9493431-9493450 | Msa1232890:intron | 35.0% | |
| TCCTGGTTACTATATGCAAA+TGG | + | chr8_2:9493435-9493454 | None:intergenic | 35.0% | |
| AGTCATTCAATCAACATTCC+TGG | + | chr8_2:9493452-9493471 | None:intergenic | 35.0% | |
| GGGCATTACATAACAGTTTA+AGG | - | chr8_2:9493589-9493608 | Msa1232890:intron | 35.0% | |
| AGTGAACTGCATAACATAAC+AGG | + | chr8_2:9493635-9493654 | None:intergenic | 35.0% | |
| TGTTATGTTATGCAGTTCAC+TGG | - | chr8_2:9493634-9493653 | Msa1232890:intron | 35.0% | |
| ! | TCTTTTATTGCGTTGTGTGT+AGG | - | chr8_2:9493705-9493724 | Msa1232890:intron | 35.0% |
| TTGTATGTCTTGTGGTTGTT+AGG | - | chr8_2:9493780-9493799 | Msa1232890:intron | 35.0% | |
| TGTATGTCTTGTGGTTGTTA+GGG | - | chr8_2:9493781-9493800 | Msa1232890:intron | 35.0% | |
| ! | TGAACTAAGAATAAGCATCG+AGG | + | chr8_2:9493936-9493955 | None:intergenic | 35.0% |
| ! | CTGAAGTGACTTTAGTTTAG+TGG | - | chr8_2:9494004-9494023 | Msa1232890:intron | 35.0% |
| !!! | GCATTTTTCAGGAAGTTGTT+AGG | - | chr8_2:9494186-9494205 | Msa1232890:intron | 35.0% |
| ! | AGGAAGTTGTTAGGATTTTC+AGG | - | chr8_2:9494195-9494214 | Msa1232890:intron | 35.0% |
| !! | AGGATTTTCAGGAAGTTGTT+AGG | - | chr8_2:9494206-9494225 | Msa1232890:intron | 35.0% |
| ATAGTAGCAACAAAATGGAG+TGG | - | chr8_2:9494392-9494411 | Msa1232890:intron | 35.0% | |
| TGCCTGTATACTAACAACAT+CGG | - | chr8_2:9494847-9494866 | Msa1232890:intron | 35.0% | |
| GATGCAACACTAGTCAATTT+AGG | - | chr8_2:9495157-9495176 | Msa1232890:intron | 35.0% | |
| !!! | ACTACTTTTTCCGGCTAGAA+TGG | + | chr8_2:9492377-9492396 | None:intergenic | 40.0% |
| AAGTTTCTCACTGTTTGTGG+CGG | + | chr8_2:9492418-9492437 | None:intergenic | 40.0% | |
| AGATATAATGCTTGCCCAGA+AGG | - | chr8_2:9492970-9492989 | Msa1232890:CDS | 40.0% | |
| GATATAATGCTTGCCCAGAA+GGG | - | chr8_2:9492971-9492990 | Msa1232890:CDS | 40.0% | |
| ATATAATGCTTGCCCAGAAG+GGG | - | chr8_2:9492972-9492991 | Msa1232890:CDS | 40.0% | |
| TTATTTGATCCTCCCCTTCT+GGG | + | chr8_2:9492987-9493006 | None:intergenic | 40.0% | |
| ATTATTTGATCCTCCCCTTC+TGG | + | chr8_2:9492988-9493007 | None:intergenic | 40.0% | |
| CACTTAAGACCAACACATGT+TGG | + | chr8_2:9493019-9493038 | None:intergenic | 40.0% | |
| !! | CAACATGTGTTGGTCTTAAG+TGG | - | chr8_2:9493017-9493036 | Msa1232890:CDS | 40.0% |
| !! | ATGTGTTGGTCTTAAGTGGA+AGG | - | chr8_2:9493021-9493040 | Msa1232890:CDS | 40.0% |
| !! | TGTGTTGGTCTTAAGTGGAA+GGG | - | chr8_2:9493022-9493041 | Msa1232890:CDS | 40.0% |
| ! | TCTTTTAAGCAAGAGGTCCA+AGG | - | chr8_2:9493053-9493072 | Msa1232890:CDS | 40.0% |
| CCGAATAGAGCAAATTCTGT+TGG | - | chr8_2:9493092-9493111 | Msa1232890:intron | 40.0% | |
| AGAGCAAATTCTGTTGGAAG+AGG | - | chr8_2:9493098-9493117 | Msa1232890:intron | 40.0% | |
| AAATACTGTTGGGCACAATG+GGG | + | chr8_2:9493125-9493144 | None:intergenic | 40.0% | |
| GAAATACTGTTGGGCACAAT+GGG | + | chr8_2:9493126-9493145 | None:intergenic | 40.0% | |
| ! | CTCCATTTAGGGTGGTTATT+AGG | + | chr8_2:9493285-9493304 | None:intergenic | 40.0% |
| ! | AAGAGGAGTATGGTGCATAA+GGG | + | chr8_2:9493314-9493333 | None:intergenic | 40.0% |
| ! | TAAGAGGAGTATGGTGCATA+AGG | + | chr8_2:9493315-9493334 | None:intergenic | 40.0% |
| ! | AGTTTAAGGTGTTTCGGTTC+TGG | - | chr8_2:9493603-9493622 | Msa1232890:intron | 40.0% |
| ACTGGTGCGTTTGTTCTATT+GGG | - | chr8_2:9493652-9493671 | Msa1232890:intron | 40.0% | |
| ! | AGAAGCTCAGATGTTTTGTC+AGG | - | chr8_2:9493746-9493765 | Msa1232890:intron | 40.0% |
| ! | GAAGCTCAGATGTTTTGTCA+GGG | - | chr8_2:9493747-9493766 | Msa1232890:intron | 40.0% |
| ! | ATGTTTTGTCAGGGTTTAGC+AGG | - | chr8_2:9493756-9493775 | Msa1232890:intron | 40.0% |
| TAGCAGGATTGTATGTCTTG+TGG | - | chr8_2:9493772-9493791 | Msa1232890:intron | 40.0% | |
| GTATGTCTTGTGGTTGTTAG+GGG | - | chr8_2:9493782-9493801 | Msa1232890:intron | 40.0% | |
| TATGTCTTGTGGTTGTTAGG+GGG | - | chr8_2:9493783-9493802 | Msa1232890:intron | 40.0% | |
| ! | TGTTGTGCTATTATTCTGGG+AGG | - | chr8_2:9494031-9494050 | Msa1232890:intron | 40.0% |
| GATTGGGGCTATAAGCAATT+GGG | + | chr8_2:9494647-9494666 | None:intergenic | 40.0% | |
| AGATTGGGGCTATAAGCAAT+TGG | + | chr8_2:9494648-9494667 | None:intergenic | 40.0% | |
| ATGGAACACACCTACTGTTA+GGG | - | chr8_2:9494767-9494786 | Msa1232890:intron | 40.0% | |
| TGCCGATGTTGTTAGTATAC+AGG | + | chr8_2:9494852-9494871 | None:intergenic | 40.0% | |
| !! | GGTTGATGGTTTATGACCAA+CGG | + | chr8_2:9494978-9494997 | None:intergenic | 40.0% |
| CCATGTCAGCAAACATTACA+AGG | + | chr8_2:9495021-9495040 | None:intergenic | 40.0% | |
| ! | CCTTGTAATGTTTGCTGACA+TGG | - | chr8_2:9495018-9495037 | Msa1232890:intron | 40.0% |
| !!! | CGACGAGGAACTACTTTTTC+CGG | + | chr8_2:9492386-9492405 | None:intergenic | 45.0% |
| CGGAAAAAGTAGTTCCTCGT+CGG | - | chr8_2:9492384-9492403 | Msa1232890:three_prime_UTR | 45.0% | |
| AACTAGGCTTACGAATGGAG+AGG | - | chr8_2:9492894-9492913 | Msa1232890:CDS | 45.0% | |
| !! | GTGTTGGTCTTAAGTGGAAG+GGG | - | chr8_2:9493023-9493042 | Msa1232890:CDS | 45.0% |
| CGAAATACTGTTGGGCACAA+TGG | + | chr8_2:9493127-9493146 | None:intergenic | 45.0% | |
| TTGTGCCCAACAGTATTTCG+AGG | - | chr8_2:9493127-9493146 | Msa1232890:intron | 45.0% | |
| TGTGCCCAACAGTATTTCGA+GGG | - | chr8_2:9493128-9493147 | Msa1232890:intron | 45.0% | |
| TATGTTCTGCACAACTGCGA+AGG | + | chr8_2:9493159-9493178 | None:intergenic | 45.0% | |
| GGAGAAAACTCCATTTAGGG+TGG | + | chr8_2:9493293-9493312 | None:intergenic | 45.0% | |
| GGAGAGTTAGTCAGCAATAG+AGG | + | chr8_2:9493352-9493371 | None:intergenic | 45.0% | |
| ! | TGCTGACTAACTCTCCCAAT+TGG | - | chr8_2:9493356-9493375 | Msa1232890:intron | 45.0% |
| ACGCGTAACTCATGCCAATT+GGG | + | chr8_2:9493373-9493392 | None:intergenic | 45.0% | |
| GAATGACTGCACACTTCTCA+TGG | - | chr8_2:9493464-9493483 | Msa1232890:intron | 45.0% | |
| !!! | AGGTGTTTCGGTTCTGGTTT+TGG | - | chr8_2:9493609-9493628 | Msa1232890:intron | 45.0% |
| CACTGGTGCGTTTGTTCTAT+TGG | - | chr8_2:9493651-9493670 | Msa1232890:intron | 45.0% | |
| CTGGTGCGTTTGTTCTATTG+GGG | - | chr8_2:9493653-9493672 | Msa1232890:intron | 45.0% | |
| TGGTGCGTTTGTTCTATTGG+GGG | - | chr8_2:9493654-9493673 | Msa1232890:intron | 45.0% | |
| TTGGGGGAGTTTAAGTAGCT+TGG | - | chr8_2:9493670-9493689 | Msa1232890:intron | 45.0% | |
| TGGGGGAGTTTAAGTAGCTT+GGG | - | chr8_2:9493671-9493690 | Msa1232890:intron | 45.0% | |
| GTTTAAGTAGCTTGGGGTCT+TGG | - | chr8_2:9493678-9493697 | Msa1232890:intron | 45.0% | |
| TTGAAGCCACTGTGACTGAA+TGG | - | chr8_2:9493806-9493825 | Msa1232890:intron | 45.0% | |
| GCAATAGATTGGGTCATGCT+CGG | + | chr8_2:9494437-9494456 | None:intergenic | 45.0% | |
| CTTGAACGCATTCATGCTCA+TGG | + | chr8_2:9494607-9494626 | None:intergenic | 45.0% | |
| CATGAGCATGAATGCGTTCA+AGG | - | chr8_2:9494605-9494624 | Msa1232890:intron | 45.0% | |
| GCTATAAGCAATTGGGACAC+AGG | + | chr8_2:9494640-9494659 | None:intergenic | 45.0% | |
| !! | AACTCTAGTGAGGGGTATTC+CGG | - | chr8_2:9494674-9494693 | Msa1232890:intron | 45.0% |
| !! | ACTTTGGAAGCACTACGTCT+CGG | - | chr8_2:9494720-9494739 | Msa1232890:intron | 45.0% |
| TGTTCCATCGCATGACAGTT+CGG | + | chr8_2:9494755-9494774 | None:intergenic | 45.0% | |
| GATGGAACACACCTACTGTT+AGG | - | chr8_2:9494766-9494785 | Msa1232890:intron | 45.0% | |
| TGGAACACACCTACTGTTAG+GGG | - | chr8_2:9494768-9494787 | Msa1232890:intron | 45.0% | |
| TGGATCATTCCCCTAACAGT+AGG | + | chr8_2:9494780-9494799 | None:intergenic | 45.0% | |
| AGAGCTATGTTGAAACCTGC+TGG | + | chr8_2:9494800-9494819 | None:intergenic | 45.0% | |
| ! | GCTAGTTGTTGTTGAGACAG+AGG | - | chr8_2:9494899-9494918 | Msa1232890:intron | 45.0% |
| TGAGACAGAGGAGATGTACA+AGG | - | chr8_2:9494911-9494930 | Msa1232890:intron | 45.0% | |
| TGATGGTTTATGACCAACGG+AGG | + | chr8_2:9494975-9494994 | None:intergenic | 45.0% | |
| ! | AAGCAGAAGAAGCAGGTTGA+TGG | + | chr8_2:9494992-9495011 | None:intergenic | 45.0% |
| TCAACCTGCTTCTTCTGCTT+AGG | - | chr8_2:9494992-9495011 | Msa1232890:intron | 45.0% | |
| CAACCTGCTTCTTCTGCTTA+GGG | - | chr8_2:9494993-9495012 | Msa1232890:intron | 45.0% | |
| !! | AAAAAAAAATAAAAATTGAA+AGG | + | chr8_2:9494459-9494478 | None:intergenic | 5.0% |
| ! | GCAAAGCACTCCATTCTAGC+CGG | - | chr8_2:9492364-9492383 | Msa1232890:three_prime_UTR | 50.0% |
| !! | TGCTCTATTCGGAAGCACCA+GGG | + | chr8_2:9493084-9493103 | None:intergenic | 50.0% |
| !! | TTGCTCTATTCGGAAGCACC+AGG | + | chr8_2:9493085-9493104 | None:intergenic | 50.0% |
| CACGCGTAACTCATGCCAAT+TGG | + | chr8_2:9493374-9493393 | None:intergenic | 50.0% | |
| ATTGGCATGAGTTACGCGTG+AGG | - | chr8_2:9493374-9493393 | Msa1232890:intron | 50.0% | |
| GGGGGAGTTTAAGTAGCTTG+GGG | - | chr8_2:9493672-9493691 | Msa1232890:intron | 50.0% | |
| AGCACACCATTCAGTCACAG+TGG | + | chr8_2:9493815-9493834 | None:intergenic | 50.0% | |
| CTGAATGGTGTGCTGTATCG+TGG | - | chr8_2:9493821-9493840 | Msa1232890:intron | 50.0% | |
| ! | GTGCTATTATTCTGGGAGGC+AGG | - | chr8_2:9494035-9494054 | Msa1232890:intron | 50.0% |
| !! | ACTCTAGTGAGGGGTATTCC+GGG | - | chr8_2:9494675-9494694 | Msa1232890:intron | 50.0% |
| GAAGCAACATAGGCGCACTT+TGG | - | chr8_2:9494704-9494723 | Msa1232890:intron | 50.0% | |
| TGTTAGGGGAATGATCCAGC+AGG | - | chr8_2:9494782-9494801 | Msa1232890:intron | 50.0% | |
| GTACAAGGCCCGCAAAGAAA+AGG | - | chr8_2:9494926-9494945 | Msa1232890:intron | 50.0% | |
| ! | GGCTTCCTCCTTTTCTTTGC+GGG | + | chr8_2:9494937-9494956 | None:intergenic | 50.0% |
| ! | GGGCTTCCTCCTTTTCTTTG+CGG | + | chr8_2:9494938-9494957 | None:intergenic | 50.0% |
| GTACCCTAAGCAGAAGAAGC+AGG | + | chr8_2:9494999-9495018 | None:intergenic | 50.0% | |
| TGAGGCACAGCCTCAAACTT+TGG | + | chr8_2:9495071-9495090 | None:intergenic | 50.0% | |
| ! | GTTTGAGGCTGTGCCTCATA+TGG | - | chr8_2:9495073-9495092 | Msa1232890:intron | 50.0% |
| CAGTTCTCTCTCTCCGTCGA+CGG | - | chr8_2:9492337-9492356 | Msa1232890:three_prime_UTR | 55.0% | |
| TCACGCGCGATACAAGAGTG+GGG | + | chr8_2:9492465-9492484 | None:intergenic | 55.0% | |
| CTCACGCGCGATACAAGAGT+GGG | + | chr8_2:9492466-9492485 | None:intergenic | 55.0% | |
| GAGCTGAGCGACGGCTATTA+TGG | + | chr8_2:9492514-9492533 | None:intergenic | 55.0% | |
| ! | CATTTTGCGGAGCTGAGCGA+CGG | + | chr8_2:9492523-9492542 | None:intergenic | 55.0% |
| TAATGCTTGCCCAGAAGGGG+AGG | - | chr8_2:9492975-9492994 | Msa1232890:CDS | 55.0% | |
| AGAGGTCCAAGGTTCAACCC+TGG | - | chr8_2:9493064-9493083 | Msa1232890:exon | 55.0% | |
| ! | GAAGCACCAGGGTTGAACCT+TGG | + | chr8_2:9493073-9493092 | None:intergenic | 55.0% |
| GGAGGCAGGTCTGAATCTGT+TGG | - | chr8_2:9494049-9494068 | Msa1232890:intron | 55.0% | |
| !! | CTCTAGTGAGGGGTATTCCG+GGG | - | chr8_2:9494676-9494695 | Msa1232890:intron | 55.0% |
| ! | CTATGTTGCTTCCTGGTCCC+CGG | + | chr8_2:9494696-9494715 | None:intergenic | 55.0% |
| ! | AGTGCGCCTATGTTGCTTCC+TGG | + | chr8_2:9494703-9494722 | None:intergenic | 55.0% |
| GCAACCGAACTGTCATGCGA+TGG | - | chr8_2:9494748-9494767 | Msa1232890:intron | 55.0% | |
| CAAGGCCCGCAAAGAAAAGG+AGG | - | chr8_2:9494929-9494948 | Msa1232890:intron | 55.0% | |
| GTGCTTTGCTGCACCGTCGA+CGG | + | chr8_2:9492353-9492372 | None:intergenic | 60.0% | |
| ! | TGGCGGCTTTTCTTCCGACG+AGG | + | chr8_2:9492401-9492420 | None:intergenic | 60.0% |
| CCTCACGCGCGATACAAGAG+TGG | + | chr8_2:9492467-9492486 | None:intergenic | 60.0% | |
| CCACTCTTGTATCGCGCGTG+AGG | - | chr8_2:9492464-9492483 | Msa1232890:three_prime_UTR | 60.0% | |
| CGTCGCTCAGCTCCGCAAAA+TGG | - | chr8_2:9492521-9492540 | Msa1232890:three_prime_UTR | 60.0% | |
| CGCTCAGCTCCGCAAAATGG+CGG | - | chr8_2:9492524-9492543 | Msa1232890:three_prime_UTR | 60.0% | |
| CGGGGACCAGGAAGCAACAT+AGG | - | chr8_2:9494694-9494713 | Msa1232890:intron | 60.0% | |
| CCAACGGAGGACGAAGAGCT+CGG | + | chr8_2:9494962-9494981 | None:intergenic | 60.0% | |
| !! | AACCGCGCGCCGCCATTTTG+CGG | + | chr8_2:9492536-9492555 | None:intergenic | 65.0% |
| !! | TGAGGGGTATTCCGGGGACC+AGG | - | chr8_2:9494682-9494701 | Msa1232890:intron | 65.0% |
| CGGAGGACGAAGAGCTCGGT+GGG | + | chr8_2:9494958-9494977 | None:intergenic | 65.0% | |
| ACGGAGGACGAAGAGCTCGG+TGG | + | chr8_2:9494959-9494978 | None:intergenic | 65.0% | |
| CCGAGCTCTTCGTCCTCCGT+TGG | - | chr8_2:9494959-9494978 | Msa1232890:intron | 65.0% | |
| CTCCGCAAAATGGCGGCGCG+CGG | - | chr8_2:9492531-9492550 | Msa1232890:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 9492304 | 9495380 | 9492304 | ID=Msa1232890;Name=Msa1232890 |
| chr8_2 | mRNA | 9492304 | 9495380 | 9492304 | ID=Msa1232890-mRNA-1;Parent=Msa1232890;Name=Msa1232890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=131|1|1|1|0.5|0.66|3|367|106 |
| chr8_2 | exon | 9492304 | 9492793 | 9492304 | ID=Msa1232890-mRNA-1:exon:3786;Parent=Msa1232890-mRNA-1 |
| chr8_2 | exon | 9492881 | 9493086 | 9492881 | ID=Msa1232890-mRNA-1:exon:3785;Parent=Msa1232890-mRNA-1 |
| chr8_2 | exon | 9495258 | 9495380 | 9495258 | ID=Msa1232890-mRNA-1:exon:3784;Parent=Msa1232890-mRNA-1 |
| chr8_2 | five_prime_UTR | 9495258 | 9495380 | 9495258 | ID=Msa1232890-mRNA-1:five_prime_utr;Parent=Msa1232890-mRNA-1 |
| chr8_2 | five_prime_UTR | 9493079 | 9493086 | 9493079 | ID=Msa1232890-mRNA-1:five_prime_utr;Parent=Msa1232890-mRNA-1 |
| chr8_2 | CDS | 9492881 | 9493078 | 9492881 | ID=Msa1232890-mRNA-1:cds;Parent=Msa1232890-mRNA-1 |
| chr8_2 | CDS | 9492671 | 9492793 | 9492671 | ID=Msa1232890-mRNA-1:cds;Parent=Msa1232890-mRNA-1 |
| chr8_2 | three_prime_UTR | 9492304 | 9492670 | 9492304 | ID=Msa1232890-mRNA-1:three_prime_utr;Parent=Msa1232890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
