Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313440 | XP_013444321.1 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.12e-72 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313440 | I3S856 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.01e-72 | 220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1232890 | Msa1313440 | 0.975844 | 1.054879e-140 | -8.615850e-47 |
| Msa1313440 | Msa1359920 | -0.801042 | 1.084940e-48 | -8.615850e-47 |
| Msa1098270 | Msa1313440 | -0.806032 | 1.001644e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313440 | MtrunA17_Chr8g0342041 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.95e-76 | 220 |
| Msa1313440 | MtrunA17_Chr8g0387721 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 3.18e-75 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313440 | AT5G55140.1 | 64.762 | 105 | 36 | 1 | 3 | 106 | 1 | 105 | 6.71e-46 | 144 |
Find 59 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATATAGTAAATTATTCT+AGG | 0.238978 | 8_4:-11379369 | None:intergenic |
| AACTCTAGTGAGGGGTATTC+CGG | 0.253922 | 8_4:+11378832 | Msa1313440:CDS |
| ATATAAATGCTTGTTTCTTA+AGG | 0.294228 | 8_4:+11379385 | Msa1313440:three_prime_UTR |
| CCTTGTAATGTTTGCTGACA+TGG | 0.351671 | 8_4:+11379176 | Msa1313440:three_prime_UTR |
| CACTAGAGTTATATAAAGAT+TGG | 0.372018 | 8_4:-11378819 | None:intergenic |
| TGTATTTGATATAGGTTAAG+AGG | 0.379656 | 8_4:+11379035 | Msa1313440:intron |
| GAAACAACTTATAATCTAGT+TGG | 0.382896 | 8_4:+11379407 | Msa1313440:three_prime_UTR |
| TCAACCTGCTTCTTCTGCTT+AGG | 0.384301 | 8_4:+11379150 | Msa1313440:CDS |
| CAACCTGCTTCTTCTGCTTA+GGG | 0.390606 | 8_4:+11379151 | Msa1313440:CDS |
| CATGAGCATGAATGCGTTCA+AGG | 0.398457 | 8_4:+11378763 | Msa1313440:exon |
| GATGGAACACACCTACTGTT+AGG | 0.400025 | 8_4:+11378924 | Msa1313440:CDS |
| GTTTGAGGCTGTGCCTCATA+TGG | 0.403158 | 8_4:+11379231 | Msa1313440:three_prime_UTR |
| ACTCTAGTGAGGGGTATTCC+GGG | 0.407993 | 8_4:+11378833 | Msa1313440:CDS |
| AGATTGGGGCTATAAGCAAT+TGG | 0.415456 | 8_4:-11378803 | None:intergenic |
| AAACAACTTATAATCTAGTT+GGG | 0.418471 | 8_4:+11379408 | Msa1313440:three_prime_UTR |
| ACTAGAGTTATATAAAGATT+GGG | 0.420712 | 8_4:-11378818 | None:intergenic |
| AGAAAGTTTCTCACTGTTTG+TGG | 0.430411 | 8_4:-11376602 | None:intergenic |
| GATGCAACACTAGTCAATTT+AGG | 0.430691 | 8_4:+11379315 | Msa1313440:three_prime_UTR |
| AAGCAGAAGAAGCAGGTTGA+TGG | 0.435151 | 8_4:-11379147 | None:intergenic |
| TGAGGCACAGCCTCAAACTT+TGG | 0.439856 | 8_4:-11379226 | None:intergenic |
| AGTGCGCCTATGTTGCTTCC+TGG | 0.448328 | 8_4:-11378858 | None:intergenic |
| CAATGCAAATAAACCATATG+AGG | 0.450473 | 8_4:-11379244 | None:intergenic |
| CTATGTTGCTTCCTGGTCCC+CGG | 0.462046 | 8_4:-11378851 | None:intergenic |
| ATGGAACACACCTACTGTTA+GGG | 0.464145 | 8_4:+11378925 | Msa1313440:CDS |
| GTACAAGGCCCGCAAAGAAA+AGG | 0.493013 | 8_4:+11379084 | Msa1313440:CDS |
| GATTGGGGCTATAAGCAATT+GGG | 0.504706 | 8_4:-11378802 | None:intergenic |
| CGGGGACCAGGAAGCAACAT+AGG | 0.508472 | 8_4:+11378852 | Msa1313440:CDS |
| TGTTCCATCGCATGACAGTT+CGG | 0.511917 | 8_4:-11378910 | None:intergenic |
| CCATGTCAGCAAACATTACA+AGG | 0.512547 | 8_4:-11379176 | None:intergenic |
| GAAGCAACATAGGCGCACTT+TGG | 0.520220 | 8_4:+11378862 | Msa1313440:CDS |
| TGAGGGGTATTCCGGGGACC+AGG | 0.527749 | 8_4:+11378840 | Msa1313440:CDS |
| CCGAGCTCTTCGTCCTCCGT+TGG | 0.538228 | 8_4:+11379117 | Msa1313440:CDS |
| CGGAGGACGAAGAGCTCGGT+GGG | 0.539550 | 8_4:-11379113 | None:intergenic |
| CTTGAACGCATTCATGCTCA+TGG | 0.548540 | 8_4:-11378762 | None:intergenic |
| GTACCCTAAGCAGAAGAAGC+AGG | 0.555500 | 8_4:-11379154 | None:intergenic |
| GTGCTTTGCTGCACCGTCGA+CGG | 0.564260 | 8_4:-11376534 | None:intergenic |
| GCTAGTTGTTGTTGAGACAG+AGG | 0.564385 | 8_4:+11379057 | Msa1313440:CDS |
| CAGTTCTCTCTCTCCGTCGA+CGG | 0.568181 | 8_4:+11376521 | Msa1313440:five_prime_UTR |
| GGTTGAACTCTATACAGTAT+CGG | 0.577385 | 8_4:+11376478 | None:intergenic |
| TGTTAGGGGAATGATCCAGC+AGG | 0.585091 | 8_4:+11378940 | Msa1313440:CDS |
| GCTATAAGCAATTGGGACAC+AGG | 0.590348 | 8_4:-11378795 | None:intergenic |
| GCAAAGCACTCCATTCTAGC+CGG | 0.590680 | 8_4:+11376548 | Msa1313440:five_prime_UTR |
| GGTTGATGGTTTATGACCAA+CGG | 0.595496 | 8_4:-11379133 | None:intergenic |
| TCTTTATATAACTCTAGTGA+GGG | 0.599888 | 8_4:+11378823 | Msa1313440:CDS |
| GCAACCGAACTGTCATGCGA+TGG | 0.602415 | 8_4:+11378906 | Msa1313440:CDS |
| AATATTCTATTTAAAGACAG+AGG | 0.604664 | 8_4:-11379446 | None:intergenic |
| CTAGAGTTATATAAAGATTG+GGG | 0.610839 | 8_4:-11378817 | None:intergenic |
| ATCTTTATATAACTCTAGTG+AGG | 0.616129 | 8_4:+11378822 | Msa1313440:CDS |
| TGGATCATTCCCCTAACAGT+AGG | 0.620579 | 8_4:-11378935 | None:intergenic |
| AAGTTTCTCACTGTTTGTGG+CGG | 0.625247 | 8_4:-11376599 | None:intergenic |
| CAAGGCCCGCAAAGAAAAGG+AGG | 0.626844 | 8_4:+11379087 | Msa1313440:CDS |
| CCAACGGAGGACGAAGAGCT+CGG | 0.633862 | 8_4:-11379117 | None:intergenic |
| TGAGACAGAGGAGATGTACA+AGG | 0.642473 | 8_4:+11379069 | Msa1313440:CDS |
| TGGAACACACCTACTGTTAG+GGG | 0.654422 | 8_4:+11378926 | Msa1313440:CDS |
| CTCTAGTGAGGGGTATTCCG+GGG | 0.659985 | 8_4:+11378834 | Msa1313440:CDS |
| ACTTTGGAAGCACTACGTCT+CGG | 0.676793 | 8_4:+11378878 | Msa1313440:CDS |
| ACGGAGGACGAAGAGCTCGG+TGG | 0.687356 | 8_4:-11379114 | None:intergenic |
| CTTTATATAACTCTAGTGAG+GGG | 0.705279 | 8_4:+11378824 | Msa1313440:CDS |
| TGATGGTTTATGACCAACGG+AGG | 0.718299 | 8_4:-11379130 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATATACATACTAAA+AGG | - | chr8_4:11378318-11378337 | None:intergenic | 10.0% |
| !!! | TTTTAGTATGTATATAAATA+TGG | + | chr8_4:11378317-11378336 | Msa1313440:intron | 10.0% |
| !! | TTTATATAGTAAATTATTCT+AGG | - | chr8_4:11379372-11379391 | None:intergenic | 10.0% |
| !!! | TTAATTTTGTAAATTAGAAC+TGG | - | chr8_4:11376913-11376932 | None:intergenic | 15.0% |
| !!! | TGATATTTGAACTTATTTTT+TGG | - | chr8_4:11377350-11377369 | None:intergenic | 15.0% |
| !!! | TTTAAGATCAAATATATGAA+TGG | - | chr8_4:11377702-11377721 | None:intergenic | 15.0% |
| !! | AAATACAACTTCTATATATT+TGG | + | chr8_4:11378678-11378697 | Msa1313440:intron | 15.0% |
| !! | ACATTCATATATGAGTAATT+AGG | - | chr8_4:11376801-11376820 | None:intergenic | 20.0% |
| !! | TACAAATTTGACAAAGAATT+TGG | - | chr8_4:11376972-11376991 | None:intergenic | 20.0% |
| !! | TTGTATCAAAATGTCATTAA+TGG | + | chr8_4:11376987-11377006 | Msa1313440:intron | 20.0% |
| !! | AAACAAGAAAAAGAAAAACT+AGG | + | chr8_4:11377031-11377050 | Msa1313440:intron | 20.0% |
| !! | AAATAAGTTCAAATATCATC+AGG | + | chr8_4:11377352-11377371 | Msa1313440:intron | 20.0% |
| !! | AGGAAAAATAATCAAACAAA+GGG | - | chr8_4:11377423-11377442 | None:intergenic | 20.0% |
| !! | TAGGAAAAATAATCAAACAA+AGG | - | chr8_4:11377424-11377443 | None:intergenic | 20.0% |
| !! | TTATTCTTAGTTCATTACTT+GGG | + | chr8_4:11378100-11378119 | Msa1313440:intron | 20.0% |
| !!! | TTTTTTTTACAATAAGCTGA+TGG | - | chr8_4:11378423-11378442 | None:intergenic | 20.0% |
| !! | ACTAGAGTTATATAAAGATT+GGG | - | chr8_4:11378821-11378840 | None:intergenic | 20.0% |
| !!! | ATATAAATGCTTGTTTCTTA+AGG | + | chr8_4:11379385-11379404 | Msa1313440:three_prime_UTR | 20.0% |
| !! | AAACAACTTATAATCTAGTT+GGG | + | chr8_4:11379408-11379427 | Msa1313440:three_prime_UTR | 20.0% |
| !! | AATATTCTATTTAAAGACAG+AGG | - | chr8_4:11379449-11379468 | None:intergenic | 20.0% |
| !! | ATCACATGAAATAAAAAAGT+TGG | + | chr8_4:11379480-11379499 | Msa1313440:three_prime_UTR | 20.0% |
| !! | TTAAAACAGGAAGCATAAAT+CGG | - | chr8_4:11376830-11376849 | None:intergenic | 25.0% |
| ! | ACAAAGAATGCAATTAAAAC+AGG | - | chr8_4:11376843-11376862 | None:intergenic | 25.0% |
| ! | GTCATTAATGGAAAAATGAT+AGG | + | chr8_4:11376999-11377018 | Msa1313440:intron | 25.0% |
| !!! | AACTTATTTTTTGGTAAAGC+AGG | - | chr8_4:11377341-11377360 | None:intergenic | 25.0% |
| !! | GTGCTATGTTTTATATCTTT+TGG | - | chr8_4:11377657-11377676 | None:intergenic | 25.0% |
| ! | TGTAGAAATCTCAATATTGA+GGG | + | chr8_4:11377726-11377745 | Msa1313440:intron | 25.0% |
| ! | CTTATTCTTAGTTCATTACT+TGG | + | chr8_4:11378099-11378118 | Msa1313440:intron | 25.0% |
| !!! | TTTTGTTGTGCTATTATTCT+GGG | + | chr8_4:11378186-11378205 | Msa1313440:intron | 25.0% |
| ! | ATTATTATGAAGCATGAATC+AGG | - | chr8_4:11378293-11378312 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGATTTTGCGTC+TGG | + | chr8_4:11378522-11378541 | Msa1313440:intron | 25.0% |
| ! | AAATTGAAAGGCAATAGATT+GGG | - | chr8_4:11378605-11378624 | None:intergenic | 25.0% |
| ! | AAAATTGAAAGGCAATAGAT+TGG | - | chr8_4:11378606-11378625 | None:intergenic | 25.0% |
| ! | CTAGAGTTATATAAAGATTG+GGG | - | chr8_4:11378820-11378839 | None:intergenic | 25.0% |
| ! | CACTAGAGTTATATAAAGAT+TGG | - | chr8_4:11378822-11378841 | None:intergenic | 25.0% |
| ! | ATCTTTATATAACTCTAGTG+AGG | + | chr8_4:11378822-11378841 | Msa1313440:CDS | 25.0% |
| ! | TCTTTATATAACTCTAGTGA+GGG | + | chr8_4:11378823-11378842 | Msa1313440:CDS | 25.0% |
| ! | GCAAACTTTGTATTTGATAT+AGG | + | chr8_4:11379027-11379046 | Msa1313440:intron | 25.0% |
| ! | TGTATTTGATATAGGTTAAG+AGG | + | chr8_4:11379035-11379054 | Msa1313440:intron | 25.0% |
| ! | GAAACAACTTATAATCTAGT+TGG | + | chr8_4:11379407-11379426 | Msa1313440:three_prime_UTR | 25.0% |
| !! | GTTGATAGCTTAATGCAATT+TGG | - | chr8_4:11376946-11376965 | None:intergenic | 30.0% |
| AGAAAAACTAGGTTTACGAA+TGG | + | chr8_4:11377042-11377061 | Msa1313440:intron | 30.0% | |
| CTATATGCAAATGGAAAAAG+TGG | - | chr8_4:11377584-11377603 | None:intergenic | 30.0% | |
| GTGTAGAAATCTCAATATTG+AGG | + | chr8_4:11377725-11377744 | Msa1313440:intron | 30.0% | |
| GTAGAAATCTCAATATTGAG+GGG | + | chr8_4:11377727-11377746 | Msa1313440:intron | 30.0% | |
| ! | CATAACAGTTTAAGGTGTTT+CGG | + | chr8_4:11377755-11377774 | Msa1313440:intron | 30.0% |
| CAAGTTATGCTTGAATTAGA+TGG | + | chr8_4:11378132-11378151 | Msa1313440:intron | 30.0% | |
| ! | TGAAGTGACTTTAGTTTAGT+GGG | + | chr8_4:11378163-11378182 | Msa1313440:intron | 30.0% |
| !! | GTTTTGTTGTGCTATTATTC+TGG | + | chr8_4:11378185-11378204 | Msa1313440:intron | 30.0% |
| ! | AATATGGTTGAGCATTTTTC+AGG | + | chr8_4:11378333-11378352 | Msa1313440:intron | 30.0% |
| !!! | ATTCATCAGCTGTCATTTTT+CGG | + | chr8_4:11378450-11378469 | Msa1313440:intron | 30.0% |
| AAAGCATAGTAGCAACAAAA+TGG | + | chr8_4:11378545-11378564 | Msa1313440:intron | 30.0% | |
| ! | CAAAATGGAGTGGTTTATTT+TGG | + | chr8_4:11378560-11378579 | Msa1313440:intron | 30.0% |
| CTTTATATAACTCTAGTGAG+GGG | + | chr8_4:11378824-11378843 | Msa1313440:CDS | 30.0% | |
| ! | GCAGATATGTCTTTTCAAAA+TGG | - | chr8_4:11378988-11379007 | None:intergenic | 30.0% |
| ! | TTTTCAAATGCCAAAGTTTG+AGG | + | chr8_4:11379216-11379235 | Msa1313440:three_prime_UTR | 30.0% |
| CAATGCAAATAAACCATATG+AGG | - | chr8_4:11379247-11379266 | None:intergenic | 30.0% | |
| AGAAAGTTTCTCACTGTTTG+TGG | - | chr8_4:11376605-11376624 | None:intergenic | 35.0% | |
| TTATGGTAGCAAATCGCATT+GGG | - | chr8_4:11376682-11376701 | None:intergenic | 35.0% | |
| ATTATGGTAGCAAATCGCAT+TGG | - | chr8_4:11376683-11376702 | None:intergenic | 35.0% | |
| TTATTTGATCCTCTCCTTCT+GGG | - | chr8_4:11377145-11377164 | None:intergenic | 35.0% | |
| ATTATTTGATCCTCTCCTTC+TGG | - | chr8_4:11377146-11377165 | None:intergenic | 35.0% | |
| ! | CTTGAGTTCTTTTAAGCAAG+AGG | + | chr8_4:11377204-11377223 | Msa1313440:intron | 35.0% |
| CTGAATAGAGCAAATTCTGT+TGG | + | chr8_4:11377250-11377269 | Msa1313440:intron | 35.0% | |
| AAATACAGTTAGGCACAATG+GGG | - | chr8_4:11377283-11377302 | None:intergenic | 35.0% | |
| GAAATACAGTTAGGCACAAT+GGG | - | chr8_4:11377284-11377303 | None:intergenic | 35.0% | |
| TAATCCCTCGAAATACAGTT+AGG | - | chr8_4:11377293-11377312 | None:intergenic | 35.0% | |
| TTCCTAATAACCACCCTAAA+TGG | + | chr8_4:11377438-11377457 | Msa1313440:intron | 35.0% | |
| AAGGGAGAAAACTCCATTTA+GGG | - | chr8_4:11377454-11377473 | None:intergenic | 35.0% | |
| TAAGGGAGAAAACTCCATTT+AGG | - | chr8_4:11377455-11377474 | None:intergenic | 35.0% | |
| ACTATGATGTAAGAGGAGTA+TGG | - | chr8_4:11377482-11377501 | None:intergenic | 35.0% | |
| GGTATCTACTATGATGTAAG+AGG | - | chr8_4:11377489-11377508 | None:intergenic | 35.0% | |
| TCCATTTGCATATAGTAACC+AGG | + | chr8_4:11377589-11377608 | Msa1313440:intron | 35.0% | |
| TCCTGGTTACTATATGCAAA+TGG | - | chr8_4:11377593-11377612 | None:intergenic | 35.0% | |
| AGTCATTCAATCAACATTCC+TGG | - | chr8_4:11377610-11377629 | None:intergenic | 35.0% | |
| GGGCATTACATAACAGTTTA+AGG | + | chr8_4:11377747-11377766 | Msa1313440:intron | 35.0% | |
| AGTGAACTGCATAACATAAC+AGG | - | chr8_4:11377793-11377812 | None:intergenic | 35.0% | |
| TGTTATGTTATGCAGTTCAC+TGG | + | chr8_4:11377792-11377811 | Msa1313440:intron | 35.0% | |
| ! | TCTTTTATTGCGTTGTGTGT+AGG | + | chr8_4:11377863-11377882 | Msa1313440:intron | 35.0% |
| TTGTATGTCTTGTGGTTGTT+AGG | + | chr8_4:11377938-11377957 | Msa1313440:intron | 35.0% | |
| TGTATGTCTTGTGGTTGTTA+GGG | + | chr8_4:11377939-11377958 | Msa1313440:intron | 35.0% | |
| ! | TGAACTAAGAATAAGCATCG+AGG | - | chr8_4:11378094-11378113 | None:intergenic | 35.0% |
| ! | GTGAAGTGACTTTAGTTTAG+TGG | + | chr8_4:11378162-11378181 | Msa1313440:intron | 35.0% |
| !!! | GCATTTTTCAGGAAGTTGTT+AGG | + | chr8_4:11378344-11378363 | Msa1313440:intron | 35.0% |
| ! | AGGAAGTTGTTAGGATTTTC+AGG | + | chr8_4:11378353-11378372 | Msa1313440:intron | 35.0% |
| !! | AGGATTTTCAGGAAGTTGTT+AGG | + | chr8_4:11378364-11378383 | Msa1313440:intron | 35.0% |
| ATAGTAGCAACAAAATGGAG+TGG | + | chr8_4:11378550-11378569 | Msa1313440:intron | 35.0% | |
| TGCCTGTATACTAACAACAT+CGG | + | chr8_4:11379005-11379024 | Msa1313440:intron | 35.0% | |
| GATGCAACACTAGTCAATTT+AGG | + | chr8_4:11379315-11379334 | Msa1313440:three_prime_UTR | 35.0% | |
| !!! | ACTACTTTTTCCGGCTAGAA+TGG | - | chr8_4:11376561-11376580 | None:intergenic | 40.0% |
| AAGTTTCTCACTGTTTGTGG+CGG | - | chr8_4:11376602-11376621 | None:intergenic | 40.0% | |
| AACTAGGTTTACGAATGGAG+AGG | + | chr8_4:11377047-11377066 | Msa1313440:intron | 40.0% | |
| ATTGTAAATGCTTGCCCAGA+AGG | + | chr8_4:11377128-11377147 | Msa1313440:intron | 40.0% | |
| TATCATCAACCAACATGCGT+TGG | + | chr8_4:11377165-11377184 | Msa1313440:intron | 40.0% | |
| ! | TCTTTTAAGCAAGAGGTCCA+AGG | + | chr8_4:11377211-11377230 | Msa1313440:intron | 40.0% |
| ! | TTTGCTCTATTCAGAAGCAC+CGG | - | chr8_4:11377244-11377263 | None:intergenic | 40.0% |
| AGAGCAAATTCTGTTGGAAG+AGG | + | chr8_4:11377256-11377275 | Msa1313440:intron | 40.0% | |
| CGAAATACAGTTAGGCACAA+TGG | - | chr8_4:11377285-11377304 | None:intergenic | 40.0% | |
| TTGTGCCTAACTGTATTTCG+AGG | + | chr8_4:11377285-11377304 | Msa1313440:intron | 40.0% | |
| TGTGCCTAACTGTATTTCGA+GGG | + | chr8_4:11377286-11377305 | Msa1313440:intron | 40.0% | |
| ! | CTCCATTTAGGGTGGTTATT+AGG | - | chr8_4:11377443-11377462 | None:intergenic | 40.0% |
| ! | AAGAGGAGTATGGTGCATAA+GGG | - | chr8_4:11377472-11377491 | None:intergenic | 40.0% |
| ! | TAAGAGGAGTATGGTGCATA+AGG | - | chr8_4:11377473-11377492 | None:intergenic | 40.0% |
| ! | AGTTTAAGGTGTTTCGGTTC+TGG | + | chr8_4:11377761-11377780 | Msa1313440:intron | 40.0% |
| ACTGGTGCGTTTGTTCTATT+GGG | + | chr8_4:11377810-11377829 | Msa1313440:intron | 40.0% | |
| ! | AGAAGCTCAGATGTTTTGTC+AGG | + | chr8_4:11377904-11377923 | Msa1313440:intron | 40.0% |
| ! | GAAGCTCAGATGTTTTGTCA+GGG | + | chr8_4:11377905-11377924 | Msa1313440:intron | 40.0% |
| ! | ATGTTTTGTCAGGGTTTAGC+AGG | + | chr8_4:11377914-11377933 | Msa1313440:intron | 40.0% |
| TAGCAGGATTGTATGTCTTG+TGG | + | chr8_4:11377930-11377949 | Msa1313440:intron | 40.0% | |
| GTATGTCTTGTGGTTGTTAG+GGG | + | chr8_4:11377940-11377959 | Msa1313440:intron | 40.0% | |
| TATGTCTTGTGGTTGTTAGG+GGG | + | chr8_4:11377941-11377960 | Msa1313440:intron | 40.0% | |
| ! | TGTTGTGCTATTATTCTGGG+AGG | + | chr8_4:11378189-11378208 | Msa1313440:intron | 40.0% |
| GATTGGGGCTATAAGCAATT+GGG | - | chr8_4:11378805-11378824 | None:intergenic | 40.0% | |
| AGATTGGGGCTATAAGCAAT+TGG | - | chr8_4:11378806-11378825 | None:intergenic | 40.0% | |
| ATGGAACACACCTACTGTTA+GGG | + | chr8_4:11378925-11378944 | Msa1313440:CDS | 40.0% | |
| TGCCGATGTTGTTAGTATAC+AGG | - | chr8_4:11379010-11379029 | None:intergenic | 40.0% | |
| !! | GGTTGATGGTTTATGACCAA+CGG | - | chr8_4:11379136-11379155 | None:intergenic | 40.0% |
| CCATGTCAGCAAACATTACA+AGG | - | chr8_4:11379179-11379198 | None:intergenic | 40.0% | |
| ! | CCTTGTAATGTTTGCTGACA+TGG | + | chr8_4:11379176-11379195 | Msa1313440:three_prime_UTR | 40.0% |
| !!! | CGACGAGGAACTACTTTTTC+CGG | - | chr8_4:11376570-11376589 | None:intergenic | 45.0% |
| CGGAAAAAGTAGTTCCTCGT+CGG | + | chr8_4:11376568-11376587 | Msa1313440:five_prime_UTR | 45.0% | |
| CACTTAAGACCAACGCATGT+TGG | - | chr8_4:11377177-11377196 | None:intergenic | 45.0% | |
| !! | CAACATGCGTTGGTCTTAAG+TGG | + | chr8_4:11377175-11377194 | Msa1313440:intron | 45.0% |
| !! | ATGCGTTGGTCTTAAGTGGA+AGG | + | chr8_4:11377179-11377198 | Msa1313440:intron | 45.0% |
| !! | TGCGTTGGTCTTAAGTGGAA+GGG | + | chr8_4:11377180-11377199 | Msa1313440:intron | 45.0% |
| !! | TTGCTCTATTCAGAAGCACC+GGG | - | chr8_4:11377243-11377262 | None:intergenic | 45.0% |
| TATGTTCTGCACAACTGCGA+AGG | - | chr8_4:11377317-11377336 | None:intergenic | 45.0% | |
| GGAGAAAACTCCATTTAGGG+TGG | - | chr8_4:11377451-11377470 | None:intergenic | 45.0% | |
| GGAGAGTTAGTCAGCAATAG+AGG | - | chr8_4:11377510-11377529 | None:intergenic | 45.0% | |
| ! | TGCTGACTAACTCTCCCAAT+TGG | + | chr8_4:11377514-11377533 | Msa1313440:intron | 45.0% |
| ACGCGTAACTCATGCCAATT+GGG | - | chr8_4:11377531-11377550 | None:intergenic | 45.0% | |
| GAATGACTGCACACTTCTCA+TGG | + | chr8_4:11377622-11377641 | Msa1313440:intron | 45.0% | |
| !!! | AGGTGTTTCGGTTCTGGTTT+TGG | + | chr8_4:11377767-11377786 | Msa1313440:intron | 45.0% |
| CACTGGTGCGTTTGTTCTAT+TGG | + | chr8_4:11377809-11377828 | Msa1313440:intron | 45.0% | |
| CTGGTGCGTTTGTTCTATTG+GGG | + | chr8_4:11377811-11377830 | Msa1313440:intron | 45.0% | |
| TGGTGCGTTTGTTCTATTGG+GGG | + | chr8_4:11377812-11377831 | Msa1313440:intron | 45.0% | |
| TTGGGGGAGTTTAAGTAGCT+TGG | + | chr8_4:11377828-11377847 | Msa1313440:intron | 45.0% | |
| TGGGGGAGTTTAAGTAGCTT+GGG | + | chr8_4:11377829-11377848 | Msa1313440:intron | 45.0% | |
| GTTTAAGTAGCTTGGGGTCT+TGG | + | chr8_4:11377836-11377855 | Msa1313440:intron | 45.0% | |
| TTGAAGCCACTGTGACTGAA+TGG | + | chr8_4:11377964-11377983 | Msa1313440:intron | 45.0% | |
| GCAATAGATTGGGTCATGCT+CGG | - | chr8_4:11378595-11378614 | None:intergenic | 45.0% | |
| CTTGAACGCATTCATGCTCA+TGG | - | chr8_4:11378765-11378784 | None:intergenic | 45.0% | |
| CATGAGCATGAATGCGTTCA+AGG | + | chr8_4:11378763-11378782 | Msa1313440:exon | 45.0% | |
| GCTATAAGCAATTGGGACAC+AGG | - | chr8_4:11378798-11378817 | None:intergenic | 45.0% | |
| !! | AACTCTAGTGAGGGGTATTC+CGG | + | chr8_4:11378832-11378851 | Msa1313440:CDS | 45.0% |
| !! | ACTTTGGAAGCACTACGTCT+CGG | + | chr8_4:11378878-11378897 | Msa1313440:CDS | 45.0% |
| TGTTCCATCGCATGACAGTT+CGG | - | chr8_4:11378913-11378932 | None:intergenic | 45.0% | |
| GATGGAACACACCTACTGTT+AGG | + | chr8_4:11378924-11378943 | Msa1313440:CDS | 45.0% | |
| TGGAACACACCTACTGTTAG+GGG | + | chr8_4:11378926-11378945 | Msa1313440:CDS | 45.0% | |
| TGGATCATTCCCCTAACAGT+AGG | - | chr8_4:11378938-11378957 | None:intergenic | 45.0% | |
| AGAGCTATGTTGAAACCTGC+TGG | - | chr8_4:11378958-11378977 | None:intergenic | 45.0% | |
| ! | GCTAGTTGTTGTTGAGACAG+AGG | + | chr8_4:11379057-11379076 | Msa1313440:CDS | 45.0% |
| TGAGACAGAGGAGATGTACA+AGG | + | chr8_4:11379069-11379088 | Msa1313440:CDS | 45.0% | |
| TGATGGTTTATGACCAACGG+AGG | - | chr8_4:11379133-11379152 | None:intergenic | 45.0% | |
| ! | AAGCAGAAGAAGCAGGTTGA+TGG | - | chr8_4:11379150-11379169 | None:intergenic | 45.0% |
| TCAACCTGCTTCTTCTGCTT+AGG | + | chr8_4:11379150-11379169 | Msa1313440:CDS | 45.0% | |
| CAACCTGCTTCTTCTGCTTA+GGG | + | chr8_4:11379151-11379170 | Msa1313440:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | - | chr8_4:11378617-11378636 | None:intergenic | 5.0% |
| ! | GCAAAGCACTCCATTCTAGC+CGG | + | chr8_4:11376548-11376567 | Msa1313440:five_prime_UTR | 50.0% |
| AAATGCTTGCCCAGAAGGAG+AGG | + | chr8_4:11377133-11377152 | Msa1313440:intron | 50.0% | |
| !! | GCGTTGGTCTTAAGTGGAAG+GGG | + | chr8_4:11377181-11377200 | Msa1313440:intron | 50.0% |
| !! | TGCTCTATTCAGAAGCACCG+GGG | - | chr8_4:11377242-11377261 | None:intergenic | 50.0% |
| CACGCGTAACTCATGCCAAT+TGG | - | chr8_4:11377532-11377551 | None:intergenic | 50.0% | |
| ATTGGCATGAGTTACGCGTG+AGG | + | chr8_4:11377532-11377551 | Msa1313440:intron | 50.0% | |
| GGGGGAGTTTAAGTAGCTTG+GGG | + | chr8_4:11377830-11377849 | Msa1313440:intron | 50.0% | |
| AGCACACCATTCAGTCACAG+TGG | - | chr8_4:11377973-11377992 | None:intergenic | 50.0% | |
| CTGAATGGTGTGCTGTATCG+TGG | + | chr8_4:11377979-11377998 | Msa1313440:intron | 50.0% | |
| ! | GTGCTATTATTCTGGGAGGC+AGG | + | chr8_4:11378193-11378212 | Msa1313440:intron | 50.0% |
| !! | ACTCTAGTGAGGGGTATTCC+GGG | + | chr8_4:11378833-11378852 | Msa1313440:CDS | 50.0% |
| GAAGCAACATAGGCGCACTT+TGG | + | chr8_4:11378862-11378881 | Msa1313440:CDS | 50.0% | |
| TGTTAGGGGAATGATCCAGC+AGG | + | chr8_4:11378940-11378959 | Msa1313440:CDS | 50.0% | |
| GTACAAGGCCCGCAAAGAAA+AGG | + | chr8_4:11379084-11379103 | Msa1313440:CDS | 50.0% | |
| ! | GGCTTCCTCCTTTTCTTTGC+GGG | - | chr8_4:11379095-11379114 | None:intergenic | 50.0% |
| ! | GGGCTTCCTCCTTTTCTTTG+CGG | - | chr8_4:11379096-11379115 | None:intergenic | 50.0% |
| GTACCCTAAGCAGAAGAAGC+AGG | - | chr8_4:11379157-11379176 | None:intergenic | 50.0% | |
| TGAGGCACAGCCTCAAACTT+TGG | - | chr8_4:11379229-11379248 | None:intergenic | 50.0% | |
| ! | GTTTGAGGCTGTGCCTCATA+TGG | + | chr8_4:11379231-11379250 | Msa1313440:three_prime_UTR | 50.0% |
| CAGTTCTCTCTCTCCGTCGA+CGG | + | chr8_4:11376521-11376540 | Msa1313440:five_prime_UTR | 55.0% | |
| TCACGCGCGATACAAGAGTG+GGG | - | chr8_4:11376649-11376668 | None:intergenic | 55.0% | |
| CTCACGCGCGATACAAGAGT+GGG | - | chr8_4:11376650-11376669 | None:intergenic | 55.0% | |
| GAGCTGAGCGACGGCTATTA+TGG | - | chr8_4:11376699-11376718 | None:intergenic | 55.0% | |
| ! | CATTTTGCGGAGCTGAGCGA+CGG | - | chr8_4:11376708-11376727 | None:intergenic | 55.0% |
| AGAGGTCCAAGGTTCAACCC+CGG | + | chr8_4:11377222-11377241 | Msa1313440:intron | 55.0% | |
| GGAGGCAGGTCTGAATCTGT+TGG | + | chr8_4:11378207-11378226 | Msa1313440:intron | 55.0% | |
| !! | CTCTAGTGAGGGGTATTCCG+GGG | + | chr8_4:11378834-11378853 | Msa1313440:CDS | 55.0% |
| ! | CTATGTTGCTTCCTGGTCCC+CGG | - | chr8_4:11378854-11378873 | None:intergenic | 55.0% |
| ! | AGTGCGCCTATGTTGCTTCC+TGG | - | chr8_4:11378861-11378880 | None:intergenic | 55.0% |
| GCAACCGAACTGTCATGCGA+TGG | + | chr8_4:11378906-11378925 | Msa1313440:CDS | 55.0% | |
| CAAGGCCCGCAAAGAAAAGG+AGG | + | chr8_4:11379087-11379106 | Msa1313440:CDS | 55.0% | |
| GTGCTTTGCTGCACCGTCGA+CGG | - | chr8_4:11376537-11376556 | None:intergenic | 60.0% | |
| ! | TGGCGGCTTTTCTTCCGACG+AGG | - | chr8_4:11376585-11376604 | None:intergenic | 60.0% |
| CCTCACGCGCGATACAAGAG+TGG | - | chr8_4:11376651-11376670 | None:intergenic | 60.0% | |
| CCACTCTTGTATCGCGCGTG+AGG | + | chr8_4:11376648-11376667 | Msa1313440:intron | 60.0% | |
| CGTCGCTCAGCTCCGCAAAA+TGG | + | chr8_4:11376706-11376725 | Msa1313440:intron | 60.0% | |
| CGCTCAGCTCCGCAAAATGG+CGG | + | chr8_4:11376709-11376728 | Msa1313440:intron | 60.0% | |
| !! | GAAGCACCGGGGTTGAACCT+TGG | - | chr8_4:11377231-11377250 | None:intergenic | 60.0% |
| CGGGGACCAGGAAGCAACAT+AGG | + | chr8_4:11378852-11378871 | Msa1313440:CDS | 60.0% | |
| CCAACGGAGGACGAAGAGCT+CGG | - | chr8_4:11379120-11379139 | None:intergenic | 60.0% | |
| !! | AACCGCGCGCCGCCATTTTG+CGG | - | chr8_4:11376721-11376740 | None:intergenic | 65.0% |
| !! | TGAGGGGTATTCCGGGGACC+AGG | + | chr8_4:11378840-11378859 | Msa1313440:CDS | 65.0% |
| CGGAGGACGAAGAGCTCGGT+GGG | - | chr8_4:11379116-11379135 | None:intergenic | 65.0% | |
| ACGGAGGACGAAGAGCTCGG+TGG | - | chr8_4:11379117-11379136 | None:intergenic | 65.0% | |
| CCGAGCTCTTCGTCCTCCGT+TGG | + | chr8_4:11379117-11379136 | Msa1313440:CDS | 65.0% | |
| CTCCGCAAAATGGCGGCGCG+CGG | + | chr8_4:11376716-11376735 | Msa1313440:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 11376488 | 11379538 | 11376488 | ID=Msa1313440;Name=Msa1313440 |
| chr8_4 | mRNA | 11376488 | 11379538 | 11376488 | ID=Msa1313440-mRNA-1;Parent=Msa1313440;Name=Msa1313440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=131|1|1|1|0.5|0.33|3|367|106 |
| chr8_4 | exon | 11376488 | 11376610 | 11376488 | ID=Msa1313440-mRNA-1:exon:4257;Parent=Msa1313440-mRNA-1 |
| chr8_4 | exon | 11378756 | 11378961 | 11378756 | ID=Msa1313440-mRNA-1:exon:4258;Parent=Msa1313440-mRNA-1 |
| chr8_4 | exon | 11379049 | 11379538 | 11379049 | ID=Msa1313440-mRNA-1:exon:4259;Parent=Msa1313440-mRNA-1 |
| chr8_4 | five_prime_UTR | 11376488 | 11376610 | 11376488 | ID=Msa1313440-mRNA-1:five_prime_utr;Parent=Msa1313440-mRNA-1 |
| chr8_4 | five_prime_UTR | 11378756 | 11378763 | 11378756 | ID=Msa1313440-mRNA-1:five_prime_utr;Parent=Msa1313440-mRNA-1 |
| chr8_4 | CDS | 11378764 | 11378961 | 11378764 | ID=Msa1313440-mRNA-1:cds;Parent=Msa1313440-mRNA-1 |
| chr8_4 | CDS | 11379049 | 11379171 | 11379049 | ID=Msa1313440-mRNA-1:cds;Parent=Msa1313440-mRNA-1 |
| chr8_4 | three_prime_UTR | 11379172 | 11379538 | 11379172 | ID=Msa1313440-mRNA-1:three_prime_utr;Parent=Msa1313440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
