AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526100 MtrunA17_Chr8g0387721 100.000 106 0 0 1 106 1 106 2.20e-76 220
Msa0526100 MtrunA17_Chr8g0342041 98.113 106 2 0 1 106 1 106 3.18e-75 217
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526100 AT5G55140.1 63.810 105 37 1 3 106 1 105 1.20e-45 143

Find 87 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCAATGTTTGCTGATA+TGG 0.161816 3_4:-79878591 Msa0526100:three_prime_UTR
ACTTAGGCATTTGAAGATTT+TGG 0.175275 3_4:+79878557 None:intergenic
GTCATAATATAGTAAATTAT+TGG 0.225889 3_4:-79878244 Msa0526100:three_prime_UTR
AGTGCGCCTATGTTGCTTTC+TGG 0.240202 3_4:+79878909 None:intergenic
AGGCCGGCGGCGCTAGGGTT+GGG 0.259210 3_4:+79881579 None:intergenic
AACGCTAGTGAGGGGTATTC+CGG 0.301510 3_4:-79878935 Msa0526100:CDS
GGCGCTAGGGTTGGGGTTGA+AGG 0.302792 3_4:+79881587 None:intergenic
GGTTTCCTCCTTCTCTTTGC+GGG 0.349900 3_4:+79878675 None:intergenic
ACAGTTTATCAATTTCAGTT+TGG 0.359298 3_4:-79878412 Msa0526100:three_prime_UTR
TCTTCAAATGCCTAAGTTTG+AGG 0.363190 3_4:-79878551 Msa0526100:three_prime_UTR
TGCGGTGGTTCCGTCAAAAC+GGG 0.378616 3_4:+79881538 None:intergenic
GTTTGAGGTTGTGCCTCATA+TGG 0.383938 3_4:-79878536 Msa0526100:three_prime_UTR
TCAACCTGCTTCTTCTGCTT+AGG 0.384301 3_4:-79878617 Msa0526100:exon
CAACCTGCTTCTTCTGCTTA+GGG 0.390606 3_4:-79878616 Msa0526100:exon
CGCTAGGGTTGGGGTTGAAG+GGG 0.397527 3_4:+79881589 None:intergenic
GATGGAACACACCTACTGTT+AGG 0.400025 3_4:-79878843 Msa0526100:CDS
CACTAGCGTTATGTAGAGAT+TGG 0.401453 3_4:+79878948 None:intergenic
GAGGCCGGCGGCGCTAGGGT+TGG 0.409277 3_4:+79881578 None:intergenic
ACGCTAGTGAGGGGTATTCC+GGG 0.415196 3_4:-79878934 Msa0526100:CDS
GGGTTTCCTCCTTCTCTTTG+CGG 0.418532 3_4:+79878674 None:intergenic
AGATTGGGGCTATAAGCAAT+TGG 0.427253 3_4:+79878964 None:intergenic
CATGAGCATGAATGCGTTCA+AGG 0.431873 3_4:-79879004 Msa0526100:CDS
CTTTCAACCAACTCCACTCC+GGG 0.433958 3_4:+79881640 None:intergenic
AAGCAGAAGAAGCAGGTTGA+TGG 0.435151 3_4:+79878620 None:intergenic
GGCCGGCGGCGCTAGGGTTG+GGG 0.438610 3_4:+79881580 None:intergenic
AAGTAGAGGCCGGCGGCGCT+AGG 0.459350 3_4:+79881573 None:intergenic
ACTAGCGTTATGTAGAGATT+GGG 0.460548 3_4:+79878949 None:intergenic
ATGGAACACACCTACTGTTA+GGG 0.464145 3_4:-79878842 Msa0526100:CDS
AGAGAAGAGACGTAAAATAG+AGG 0.464708 3_4:-79881673 Msa0526100:five_prime_UTR
GTTAGTTGTTGTTGAGACAG+AGG 0.465463 3_4:-79878710 Msa0526100:CDS
TGTACGAATAGACTGAATTT+CGG 0.468402 3_4:-79881715 Msa0526100:five_prime_UTR
CTATGTTGCTTTCTGGTCCC+CGG 0.474886 3_4:+79878916 None:intergenic
ATGCGGTGGTTCCGTCAAAA+CGG 0.475445 3_4:+79881537 None:intergenic
GAGAAGAGACGTAAAATAGA+GGG 0.475475 3_4:-79881672 Msa0526100:five_prime_UTR
AAAGCAAATAAAACCATATG+AGG 0.477102 3_4:+79878523 None:intergenic
GCGCTAGGGTTGGGGTTGAA+GGG 0.493852 3_4:+79881588 None:intergenic
CAGAGCTCTTCGTCCTCCAT+TGG 0.509479 3_4:-79878650 Msa0526100:CDS
TGTTCCATCGCATGACAGTT+CGG 0.511917 3_4:+79878857 None:intergenic
AGTAGAGGCCGGCGGCGCTA+GGG 0.513498 3_4:+79881574 None:intergenic
TGGTTCCGTCAAAACGGGGA+AGG 0.514256 3_4:+79881543 None:intergenic
GCTTTCAACCAACTCCACTC+CGG 0.516574 3_4:+79881639 None:intergenic
AAAGCAACATAGGCGCACTT+TGG 0.520220 3_4:-79878905 Msa0526100:CDS
AACCCCAACCCTAGCGCCGC+CGG 0.521091 3_4:-79881582 Msa0526100:five_prime_UTR
GGTTGATGGTTTATGACCAA+TGG 0.522943 3_4:+79878634 None:intergenic
GAAGTGACCCGGAGTGGAGT+TGG 0.525746 3_4:-79881647 Msa0526100:five_prime_UTR
CTCTAAGTACAACTTAGATT+AGG 0.526741 3_4:+79881742 None:intergenic
GATTGGGGCTATAAGCAATT+GGG 0.527244 3_4:+79878965 None:intergenic
TGTATTTGATATAGGTCAAG+AGG 0.544788 3_4:-79878732 Msa0526100:intron
GGTTCCGTCAAAACGGGGAA+GGG 0.549299 3_4:+79881544 None:intergenic
GTACCCTAAGCAGAAGAAGC+AGG 0.555500 3_4:+79878613 None:intergenic
GTACAAGGCCCGCAAAGAGA+AGG 0.555978 3_4:-79878683 Msa0526100:CDS
CGTCAAAACGGGGAAGGGCA+AGG 0.564587 3_4:+79881549 None:intergenic
CGGGGACCAGAAAGCAACAT+AGG 0.565331 3_4:-79878915 Msa0526100:CDS
ATAGACTGAATTTCGGAGAA+GGG 0.567788 3_4:-79881708 Msa0526100:five_prime_UTR
TGGAGGACGAAGAGCTCTGT+GGG 0.570519 3_4:+79878654 None:intergenic
ATCTAAGTTGTACTTAGAGA+TGG 0.572654 3_4:-79881738 Msa0526100:five_prime_UTR
AGAAGAGACGTAAAATAGAG+GGG 0.574408 3_4:-79881671 Msa0526100:five_prime_UTR
AGGGCAAGGAAAGTAGAGGC+CGG 0.576902 3_4:+79881563 None:intergenic
AATAGAGGGGAGAAGTGACC+CGG 0.577040 3_4:-79881658 Msa0526100:five_prime_UTR
AATAGACTGAATTTCGGAGA+AGG 0.579412 3_4:-79881709 Msa0526100:five_prime_UTR
AGGGGAACGCTGATTTGAGA+AGG 0.583542 3_4:+79881607 None:intergenic
TGTTAGGGGAATGATCCAGC+AGG 0.585091 3_4:-79878827 Msa0526100:intron
TGAGGCACAACCTCAAACTT+AGG 0.586101 3_4:+79878541 None:intergenic
GCTATAAGCAATTGGGACAC+AGG 0.590348 3_4:+79878972 None:intergenic
TGACGGAACCACCGCATAGG+AGG 0.593538 3_4:-79881531 Msa0526100:intron
CCATATCAGCAAACATTGCA+AGG 0.597443 3_4:+79878591 None:intergenic
GCAACCGAACTGTCATGCGA+TGG 0.602415 3_4:-79878861 Msa0526100:CDS
CAAGGCCCGCAAAGAGAAGG+AGG 0.604236 3_4:-79878680 Msa0526100:CDS
ATCTCTACATAACGCTAGTG+AGG 0.609634 3_4:-79878945 Msa0526100:CDS
CTAGCGTTATGTAGAGATTG+GGG 0.616077 3_4:+79878950 None:intergenic
TGGATCATTCCCCTAACAGT+AGG 0.620579 3_4:+79878832 None:intergenic
TGATGGTTTATGACCAATGG+AGG 0.622285 3_4:+79878637 None:intergenic
CAGTTCGGTTGCATTTGCCG+AGG 0.626107 3_4:+79878872 None:intergenic
TCTCTACATAACGCTAGTGA+GGG 0.627577 3_4:-79878944 Msa0526100:CDS
AGGGGAGAAGTGACCCGGAG+TGG 0.637707 3_4:-79881653 Msa0526100:five_prime_UTR
GGAACGCTGATTTGAGAAGG+AGG 0.641765 3_4:+79881610 None:intergenic
TGAGACAGAGGAGATGTACA+AGG 0.642473 3_4:-79878698 Msa0526100:CDS
ACTTTGGAAGCACTACGCCT+CGG 0.645701 3_4:-79878889 Msa0526100:CDS
GCAAGGAAAGTAGAGGCCGG+CGG 0.651496 3_4:+79881566 None:intergenic
TGGAACACACCTACTGTTAG+GGG 0.654422 3_4:-79878841 Msa0526100:CDS
GGGAAGGGCAAGGAAAGTAG+AGG 0.662057 3_4:+79881559 None:intergenic
ATGGAGGACGAAGAGCTCTG+TGG 0.663844 3_4:+79878653 None:intergenic
CGCTAGTGAGGGGTATTCCG+GGG 0.667158 3_4:-79878933 Msa0526100:CDS
AAGACTTACCTCCTATGCGG+TGG 0.667701 3_4:+79881523 None:intergenic
CTCTACATAACGCTAGTGAG+GGG 0.670443 3_4:-79878943 Msa0526100:CDS
GCGGTGGTTCCGTCAAAACG+GGG 0.711779 3_4:+79881539 None:intergenic
TCAAAGACTTACCTCCTATG+CGG 0.743924 3_4:+79881520 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATGATTGATATAATA+TGG - chr3_4:79879613-79879632 Msa0526100:intron 10.0%
!! AAAATTTAAATAAAATTGGA+AGG + chr3_4:79880861-79880880 None:intergenic 10.0%
!!! TTATGCTTTTATTAATTCAA+GGG - chr3_4:79878576-79878595 Msa0526100:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTACTATAGC+TGG - chr3_4:79878818-79878837 Msa0526100:intron 15.0%
!! AAATAAAAAAATAAAGAACG+TGG + chr3_4:79880096-79880115 None:intergenic 15.0%
!!! TTTTTTAGTAATAAGTCATA+AGG - chr3_4:79880270-79880289 Msa0526100:intron 15.0%
!!! ATAATTTTTAAGTTGTTTCA+AGG - chr3_4:79881523-79881542 Msa0526100:intron 15.0%
!!! TAATTTTTAAGTTGTTTCAA+GGG - chr3_4:79881524-79881543 Msa0526100:intron 15.0%
!! GTCATAATATAGTAAATTAT+TGG - chr3_4:79881753-79881772 Msa0526100:five_prime_UTR 15.0%
!!! GTTATGCTTTTATTAATTCA+AGG - chr3_4:79878575-79878594 Msa0526100:three_prime_UTR 20.0%
!! TTTATTATGAAGCATGAATT+GGG + chr3_4:79879176-79879195 None:intergenic 20.0%
!!! TTTTATTATGAAGCATGAAT+TGG + chr3_4:79879177-79879196 None:intergenic 20.0%
!!! AAATAAACAACTCCATTTTA+TGG + chr3_4:79879835-79879854 None:intergenic 20.0%
!!! TAAAATGGAGTTGTTTATTT+TGG - chr3_4:79879835-79879854 Msa0526100:intron 20.0%
!!! ATTTTTATTCCCATGAAATA+GGG - chr3_4:79880039-79880058 Msa0526100:intron 20.0%
!! TTAAAAAAAAATCAAGAACG+TGG + chr3_4:79880159-79880178 None:intergenic 20.0%
!!! TATGTTAATTTTTACAACCT+GGG + chr3_4:79880239-79880258 None:intergenic 20.0%
!!! TTATGTTAATTTTTACAACC+TGG + chr3_4:79880240-79880259 None:intergenic 20.0%
!!! GAATTTTTAAGAAAAGTGTT+TGG + chr3_4:79880353-79880372 None:intergenic 20.0%
!!! ATAATGAGAATTTTATTCCT+AGG + chr3_4:79880375-79880394 None:intergenic 20.0%
!! ATCTGATAAAAAAACATTCT+TGG - chr3_4:79881731-79881750 Msa0526100:five_prime_UTR 20.0%
! TTTCATACTTGATTGATTGA+TGG - chr3_4:79878525-79878544 Msa0526100:three_prime_UTR 25.0%
! CTAAATGATTAATCTCATAC+TGG + chr3_4:79878651-79878670 None:intergenic 25.0%
!! CATTTTCTTAAATTACTGTC+AGG + chr3_4:79878700-79878719 None:intergenic 25.0%
! TAATGAAGAAAACAAAAGCA+AGG + chr3_4:79878929-79878948 None:intergenic 25.0%
!! TTTAACATAACATCGATTGA+TGG - chr3_4:79879131-79879150 Msa0526100:intron 25.0%
! TAGTATATACTGAAACTGAA+AGG + chr3_4:79879204-79879223 None:intergenic 25.0%
! TATATACTATCGTTGAATAG+CGG - chr3_4:79879215-79879234 Msa0526100:intron 25.0%
!!! GTATTTTTTGAAATGTCATG+AGG - chr3_4:79879698-79879717 Msa0526100:intron 25.0%
! TCTTAATATAACAATCCGAT+CGG - chr3_4:79879739-79879758 Msa0526100:intron 25.0%
! ATAAAAATGACGAGAATGTA+AGG + chr3_4:79880027-79880046 None:intergenic 25.0%
!! CATTTTTATTCCCATGAAAT+AGG - chr3_4:79880038-79880057 Msa0526100:intron 25.0%
!! CACTTTTCTTAAAAATTCCT+AGG - chr3_4:79880355-79880374 Msa0526100:intron 25.0%
!! AAATTCTCATTATGTTTTCC+TGG - chr3_4:79880382-79880401 Msa0526100:intron 25.0%
!! AATTCTCATTATGTTTTCCT+GGG - chr3_4:79880383-79880402 Msa0526100:intron 25.0%
! GAACTAAAAAATTGTATTGG+AGG - chr3_4:79880603-79880622 Msa0526100:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG - chr3_4:79880607-79880626 Msa0526100:intron 25.0%
! GGTAACTTTGTATTTGATAT+AGG - chr3_4:79881257-79881276 Msa0526100:intron 25.0%
! AAAGCAAATAAAACCATATG+AGG + chr3_4:79881477-79881496 None:intergenic 25.0%
! ACAGTTTATCAATTTCAGTT+TGG - chr3_4:79881585-79881604 Msa0526100:five_prime_UTR 25.0%
CTCTAAGTACAACTTAGATT+AGG + chr3_4:79878258-79878277 None:intergenic 30.0%
ATCTAAGTTGTACTTAGAGA+TGG - chr3_4:79878259-79878278 Msa0526100:three_prime_UTR 30.0%
TGTACGAATAGACTGAATTT+CGG - chr3_4:79878282-79878301 Msa0526100:three_prime_UTR 30.0%
AAGAACCTAAACCTTAACAT+TGG + chr3_4:79878553-79878572 None:intergenic 30.0%
! ATGTTAAGGTTTAGGTTCTT+TGG - chr3_4:79878553-79878572 Msa0526100:three_prime_UTR 30.0%
! TGCTTTTATTAATTCAAGGG+AGG - chr3_4:79878579-79878598 Msa0526100:three_prime_UTR 30.0%
! CTAATCATATGTGTTGATGT+TGG - chr3_4:79878732-79878751 Msa0526100:intron 30.0%
!!! AATTTGCTGCCTATGTTTTA+TGG + chr3_4:79878787-79878806 None:intergenic 30.0%
TCTTCATTAAAACTTCAGCA+AGG - chr3_4:79878940-79878959 Msa0526100:CDS 30.0%
!! GCTTTTGTTGTGCTATATTT+CGG - chr3_4:79879068-79879087 Msa0526100:intron 30.0%
!! TTGTTTTTCAGTTAGTTGTC+AGG - chr3_4:79879425-79879444 Msa0526100:intron 30.0%
! ATGCATCAGTTGTCAATTTT+AGG - chr3_4:79879479-79879498 Msa0526100:intron 30.0%
! AGTACAACTTTTAGTATGGA+AGG - chr3_4:79879505-79879524 Msa0526100:intron 30.0%
AAAACTCAAAACTAGTGTGA+GGG - chr3_4:79879778-79879797 Msa0526100:intron 30.0%
AGAGATAAAAAACACATTCC+TGG - chr3_4:79879909-79879928 Msa0526100:intron 30.0%
GAGATAAAAAACACATTCCT+GGG - chr3_4:79879910-79879929 Msa0526100:intron 30.0%
GAAAGAAGAATACCTATGTT+TGG - chr3_4:79879945-79879964 Msa0526100:intron 30.0%
AATACCTATGTTTGGTAGAA+AGG - chr3_4:79879953-79879972 Msa0526100:intron 30.0%
GGAACAAAAATAATATGCCT+AGG - chr3_4:79879974-79879993 Msa0526100:intron 30.0%
AAAAAAATCAAGAACGTGGT+TGG + chr3_4:79880155-79880174 None:intergenic 30.0%
! ATGAGTTTTTATCAAGAACG+TGG + chr3_4:79880191-79880210 None:intergenic 30.0%
TGGGAACACAATAGTAAAAT+TGG + chr3_4:79880220-79880239 None:intergenic 30.0%
! AATTTTACTATTGTGTTCCC+AGG - chr3_4:79880219-79880238 Msa0526100:intron 30.0%
! AGGATTCTTTTCAAAGAAGT+GGG + chr3_4:79880312-79880331 None:intergenic 30.0%
! TAGGATTCTTTTCAAAGAAG+TGG + chr3_4:79880313-79880332 None:intergenic 30.0%
! ACTTCTTTGAAAAGAATCCT+AGG - chr3_4:79880312-79880331 Msa0526100:intron 30.0%
! GGTTGTCAATTTTTATTCCT+AGG + chr3_4:79880332-79880351 None:intergenic 30.0%
TGGAAAAAATAGAGGACATT+GGG - chr3_4:79880521-79880540 Msa0526100:intron 30.0%
!!! ATTTTTTAGTTCCCCCAAAT+GGG + chr3_4:79880595-79880614 None:intergenic 30.0%
!!! AATTTTTTAGTTCCCCCAAA+TGG + chr3_4:79880596-79880615 None:intergenic 30.0%
GGGGAACTAAAAAATTGTAT+TGG - chr3_4:79880600-79880619 Msa0526100:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG - chr3_4:79880606-79880625 Msa0526100:intron 30.0%
AAATTGGAAGGAAAACACTT+TGG + chr3_4:79880849-79880868 None:intergenic 30.0%
ACCAATGTTGTTAGTATACA+GGG + chr3_4:79881240-79881259 None:intergenic 30.0%
TACCAATGTTGTTAGTATAC+AGG + chr3_4:79881241-79881260 None:intergenic 30.0%
TGTATTTGATATAGGTCAAG+AGG - chr3_4:79881265-79881284 Msa0526100:intron 30.0%
! ACTTAGGCATTTGAAGATTT+TGG + chr3_4:79881443-79881462 None:intergenic 30.0%
AATAGACTGAATTTCGGAGA+AGG - chr3_4:79878288-79878307 Msa0526100:three_prime_UTR 35.0%
ATAGACTGAATTTCGGAGAA+GGG - chr3_4:79878289-79878308 Msa0526100:three_prime_UTR 35.0%
AGAGAAGAGACGTAAAATAG+AGG - chr3_4:79878324-79878343 Msa0526100:three_prime_UTR 35.0%
GAGAAGAGACGTAAAATAGA+GGG - chr3_4:79878325-79878344 Msa0526100:three_prime_UTR 35.0%
AGAAGAGACGTAAAATAGAG+GGG - chr3_4:79878326-79878345 Msa0526100:three_prime_UTR 35.0%
! GATTGATGGATCCAATGTTA+AGG - chr3_4:79878539-79878558 Msa0526100:three_prime_UTR 35.0%
TGGATCCAATGTTAAGGTTT+AGG - chr3_4:79878545-79878564 Msa0526100:three_prime_UTR 35.0%
TTATGGACACTTCTGATTGA+AGG + chr3_4:79878770-79878789 None:intergenic 35.0%
!! CAGAAGTGTCCATAAAACAT+AGG - chr3_4:79878775-79878794 Msa0526100:intron 35.0%
CCAATTTAAGCATATGTTGC+AGG + chr3_4:79879015-79879034 None:intergenic 35.0%
CCTGCAACATATGCTTAAAT+TGG - chr3_4:79879012-79879031 Msa0526100:intron 35.0%
!! CTCTGTCATCTTTTGTTTAG+TGG - chr3_4:79879046-79879065 Msa0526100:intron 35.0%
! GTGCAGTACAACTTTTAGTA+TGG - chr3_4:79879501-79879520 Msa0526100:intron 35.0%
! TGAACCAGTTTAAAACCGAT+CGG + chr3_4:79879757-79879776 None:intergenic 35.0%
CAAAACTCAAAACTAGTGTG+AGG - chr3_4:79879777-79879796 Msa0526100:intron 35.0%
AAACTCAAAACTAGTGTGAG+GGG - chr3_4:79879779-79879798 Msa0526100:intron 35.0%
! AACAACTCCATTTTATGGTC+CGG + chr3_4:79879830-79879849 None:intergenic 35.0%
TTGGTTCAGTTAATTGAACC+AGG - chr3_4:79879854-79879873 Msa0526100:intron 35.0%
TGTTCCTTTCTACCAAACAT+AGG + chr3_4:79879960-79879979 None:intergenic 35.0%
TGTAAGGTAAGTAGATTCCT+GGG + chr3_4:79880011-79880030 None:intergenic 35.0%
ATGTAAGGTAAGTAGATTCC+TGG + chr3_4:79880012-79880031 None:intergenic 35.0%
TTATTCCCATGAAATAGGGA+TGG - chr3_4:79880043-79880062 Msa0526100:intron 35.0%
TATTCCCATGAAATAGGGAT+GGG - chr3_4:79880044-79880063 Msa0526100:intron 35.0%
! TTTTCCCATCCCTATTTCAT+GGG + chr3_4:79880051-79880070 None:intergenic 35.0%
! ATTTTCCCATCCCTATTTCA+TGG + chr3_4:79880052-79880071 None:intergenic 35.0%
GATGGGAAAATTATATTCCC+AGG - chr3_4:79880061-79880080 Msa0526100:intron 35.0%
! GTTTTTATCAAGAACGTGGT+TGG + chr3_4:79880187-79880206 None:intergenic 35.0%
! ATTCTTTTCAAAGAAGTGGG+TGG + chr3_4:79880309-79880328 None:intergenic 35.0%
GAAAAAGATGAAGGAGTAAG+TGG - chr3_4:79880501-79880520 Msa0526100:intron 35.0%
GGAGTAAGTGGAAAAAATAG+AGG - chr3_4:79880513-79880532 Msa0526100:intron 35.0%
GTGGAAAAAATAGAGGACAT+TGG - chr3_4:79880520-79880539 Msa0526100:intron 35.0%
AAAAAATAGAGGACATTGGG+AGG - chr3_4:79880524-79880543 Msa0526100:intron 35.0%
AATATAAAACCCTCCCCATT+TGG - chr3_4:79880578-79880597 Msa0526100:intron 35.0%
ATATAAAACCCTCCCCATTT+GGG - chr3_4:79880579-79880598 Msa0526100:intron 35.0%
!!! TTTTTTAGTTCCCCCAAATG+GGG + chr3_4:79880594-79880613 None:intergenic 35.0%
ACTAGCGTTATGTAGAGATT+GGG + chr3_4:79881051-79881070 None:intergenic 35.0%
GGAGATAGGTAGTTTCAAAA+TGG + chr3_4:79881219-79881238 None:intergenic 35.0%
TTGTTAGTATACAGGGAGAT+AGG + chr3_4:79881233-79881252 None:intergenic 35.0%
TCCCTGTATACTAACAACAT+TGG - chr3_4:79881236-79881255 Msa0526100:intron 35.0%
TCTTCAAATGCCTAAGTTTG+AGG - chr3_4:79881446-79881465 Msa0526100:intron 35.0%
!! TAAACTGTTTTCAAGCACAG+AGG + chr3_4:79881573-79881592 None:intergenic 35.0%
TCAAAGACTTACCTCCTATG+CGG + chr3_4:79878480-79878499 None:intergenic 40.0%
! TATGTGTTGATGTTGGACAC+CGG - chr3_4:79878739-79878758 Msa0526100:intron 40.0%
TTGTGAAGTAGCTGCTATAG+CGG - chr3_4:79879307-79879326 Msa0526100:intron 40.0%
TCGCATATTGCAGAAAAGAG+CGG + chr3_4:79879369-79879388 None:intergenic 40.0%
! GAAGGCATAACTGTGATGTT+TGG - chr3_4:79879523-79879542 Msa0526100:intron 40.0%
! GAAAGCATAACCGTGATGTT+TGG - chr3_4:79879645-79879664 Msa0526100:intron 40.0%
TACAGTGACACCAAACATCA+CGG + chr3_4:79879658-79879677 None:intergenic 40.0%
!!! CAATCCGATCGGTTTTAAAC+TGG - chr3_4:79879750-79879769 Msa0526100:intron 40.0%
AGGCATGAACCAATCTCTAA+GGG - chr3_4:79879874-79879893 Msa0526100:intron 40.0%
AAACACATTCCTGGGAATAG+AGG - chr3_4:79879918-79879937 Msa0526100:intron 40.0%
CCTGGGCATTAATTATTCCT+AGG + chr3_4:79879994-79880013 None:intergenic 40.0%
CCTAGGAATAATTAATGCCC+AGG - chr3_4:79879991-79880010 Msa0526100:intron 40.0%
TTCCTGGGAAAGTTAATTCC+AGG - chr3_4:79880398-79880417 Msa0526100:intron 40.0%
TCCTGGGAAAGTTAATTCCA+GGG - chr3_4:79880399-79880418 Msa0526100:intron 40.0%
! CAGGGAGTAATTTTTGCATC+CGG - chr3_4:79880417-79880436 Msa0526100:intron 40.0%
! AGGGAGTAATTTTTGCATCC+GGG - chr3_4:79880418-79880437 Msa0526100:intron 40.0%
AACTCGCAAAGAAAGCCTTA+GGG + chr3_4:79880455-79880474 None:intergenic 40.0%
TAAGGCTTTCTTTGCGAGTT+CGG - chr3_4:79880455-79880474 Msa0526100:intron 40.0%
GAGGGTTTGGAAAAAGATGA+AGG - chr3_4:79880492-79880511 Msa0526100:intron 40.0%
TATAAAACCCTCCCCATTTG+GGG - chr3_4:79880580-79880599 Msa0526100:intron 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - chr3_4:79880613-79880632 Msa0526100:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG - chr3_4:79880614-79880633 Msa0526100:intron 40.0%
CTGTGGGGTGAGAAATATAT+GGG + chr3_4:79880787-79880806 None:intergenic 40.0%
TCTGTGGGGTGAGAAATATA+TGG + chr3_4:79880788-79880807 None:intergenic 40.0%
TTTGGCATTGTTTGCGAGTT+TGG + chr3_4:79880831-79880850 None:intergenic 40.0%
CTGTTCTGACTTCAACTTGT+AGG - chr3_4:79880970-79880989 Msa0526100:intron 40.0%
GATTGGGGCTATAAGCAATT+GGG + chr3_4:79881035-79881054 None:intergenic 40.0%
AGATTGGGGCTATAAGCAAT+TGG + chr3_4:79881036-79881055 None:intergenic 40.0%
CTAGCGTTATGTAGAGATTG+GGG + chr3_4:79881050-79881069 None:intergenic 40.0%
CACTAGCGTTATGTAGAGAT+TGG + chr3_4:79881052-79881071 None:intergenic 40.0%
ATCTCTACATAACGCTAGTG+AGG - chr3_4:79881052-79881071 Msa0526100:intron 40.0%
TCTCTACATAACGCTAGTGA+GGG - chr3_4:79881053-79881072 Msa0526100:intron 40.0%
ATGGAACACACCTACTGTTA+GGG - chr3_4:79881155-79881174 Msa0526100:intron 40.0%
! GTTAGTTGTTGTTGAGACAG+AGG - chr3_4:79881287-79881306 Msa0526100:intron 40.0%
TGATGGTTTATGACCAATGG+AGG + chr3_4:79881363-79881382 None:intergenic 40.0%
!! GGTTGATGGTTTATGACCAA+TGG + chr3_4:79881366-79881385 None:intergenic 40.0%
CCATATCAGCAAACATTGCA+AGG + chr3_4:79881409-79881428 None:intergenic 40.0%
! CCTTGCAATGTTTGCTGATA+TGG - chr3_4:79881406-79881425 Msa0526100:intron 40.0%
! CTTCTGATTGAAGGCATGTC+CGG + chr3_4:79878761-79878780 None:intergenic 45.0%
TGTGCTATATTTCGGCAAGC+AGG - chr3_4:79879076-79879095 Msa0526100:intron 45.0%
! CTTAGAGATTGGTTCATGCC+TGG + chr3_4:79879875-79879894 None:intergenic 45.0%
CAGGCATGAACCAATCTCTA+AGG - chr3_4:79879873-79879892 Msa0526100:intron 45.0%
GGCATGAACCAATCTCTAAG+GGG - chr3_4:79879875-79879894 Msa0526100:intron 45.0%
! GCATGAACCAATCTCTAAGG+GGG - chr3_4:79879876-79879895 Msa0526100:intron 45.0%
ACATTCCTGGGAATAGAGGT+TGG - chr3_4:79879922-79879941 Msa0526100:intron 45.0%
CATTCCTGGGAATAGAGGTT+GGG - chr3_4:79879923-79879942 Msa0526100:intron 45.0%
TCCCTGGAATTAACTTTCCC+AGG + chr3_4:79880403-79880422 None:intergenic 45.0%
CGGATGCAAAAATTACTCCC+TGG + chr3_4:79880419-79880438 None:intergenic 45.0%
ACTCGCAAAGAAAGCCTTAG+GGG + chr3_4:79880454-79880473 None:intergenic 45.0%
GAACTCGCAAAGAAAGCCTT+AGG + chr3_4:79880456-79880475 None:intergenic 45.0%
ATAAAACCCTCCCCATTTGG+GGG - chr3_4:79880581-79880600 Msa0526100:intron 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG - chr3_4:79880615-79880634 Msa0526100:intron 45.0%
CATTGTTTGCGAGTTTGGAG+GGG + chr3_4:79880826-79880845 None:intergenic 45.0%
GCATTGTTTGCGAGTTTGGA+GGG + chr3_4:79880827-79880846 None:intergenic 45.0%
CATGAGCATGAATGCGTTCA+AGG - chr3_4:79880993-79881012 Msa0526100:intron 45.0%
GCTATAAGCAATTGGGACAC+AGG + chr3_4:79881028-79881047 None:intergenic 45.0%
CTCTACATAACGCTAGTGAG+GGG - chr3_4:79881054-79881073 Msa0526100:intron 45.0%
AAAGCAACATAGGCGCACTT+TGG - chr3_4:79881092-79881111 Msa0526100:intron 45.0%
TGTTCCATCGCATGACAGTT+CGG + chr3_4:79881143-79881162 None:intergenic 45.0%
GATGGAACACACCTACTGTT+AGG - chr3_4:79881154-79881173 Msa0526100:intron 45.0%
TGGAACACACCTACTGTTAG+GGG - chr3_4:79881156-79881175 Msa0526100:intron 45.0%
TGGATCATTCCCCTAACAGT+AGG + chr3_4:79881168-79881187 None:intergenic 45.0%
TGAGACAGAGGAGATGTACA+AGG - chr3_4:79881299-79881318 Msa0526100:intron 45.0%
! AAGCAGAAGAAGCAGGTTGA+TGG + chr3_4:79881380-79881399 None:intergenic 45.0%
TCAACCTGCTTCTTCTGCTT+AGG - chr3_4:79881380-79881399 Msa0526100:intron 45.0%
CAACCTGCTTCTTCTGCTTA+GGG - chr3_4:79881381-79881400 Msa0526100:intron 45.0%
TGAGGCACAACCTCAAACTT+AGG + chr3_4:79881459-79881478 None:intergenic 45.0%
! GTTTGAGGTTGTGCCTCATA+TGG - chr3_4:79881461-79881480 Msa0526100:intron 45.0%
!! CAATATATTATATATAAATA+TGG - chr3_4:79879393-79879412 Msa0526100:intron 5.0%
!! AGATAAAATTTAAATAAAAT+TGG + chr3_4:79880865-79880884 None:intergenic 5.0%
AATAGAGGGGAGAAGTGACC+CGG - chr3_4:79878339-79878358 Msa0526100:three_prime_UTR 50.0%
CTTTCAACCAACTCCACTCC+GGG + chr3_4:79878360-79878379 None:intergenic 50.0%
GCTTTCAACCAACTCCACTC+CGG + chr3_4:79878361-79878380 None:intergenic 50.0%
!! GGAACGCTGATTTGAGAAGG+AGG + chr3_4:79878390-79878409 None:intergenic 50.0%
!! AGGGGAACGCTGATTTGAGA+AGG + chr3_4:79878393-79878412 None:intergenic 50.0%
ATGCGGTGGTTCCGTCAAAA+CGG + chr3_4:79878463-79878482 None:intergenic 50.0%
! TTTTGACGGAACCACCGCAT+AGG - chr3_4:79878463-79878482 Msa0526100:three_prime_UTR 50.0%
AAGACTTACCTCCTATGCGG+TGG + chr3_4:79878477-79878496 None:intergenic 50.0%
CTCAAAACTAGTGTGAGGGG+AGG - chr3_4:79879782-79879801 Msa0526100:intron 50.0%
CTAGTGTGAGGGGAGGAAAA+TGG - chr3_4:79879789-79879808 Msa0526100:intron 50.0%
ATGGCTCAGTTTGCGAAAGC+CGG - chr3_4:79879808-79879827 Msa0526100:intron 50.0%
GCGAAAGCCGGACCATAAAA+TGG - chr3_4:79879820-79879839 Msa0526100:intron 50.0%
ACAAACGCCCCCTTAGAGAT+TGG + chr3_4:79879886-79879905 None:intergenic 50.0%
CTTTCCCAACCTCTATTCCC+AGG + chr3_4:79879930-79879949 None:intergenic 50.0%
! GAACGTGGCACTCTTTTCCT+GGG + chr3_4:79880081-79880100 None:intergenic 50.0%
! AGAACGTGGCACTCTTTTCC+TGG + chr3_4:79880082-79880101 None:intergenic 50.0%
!! CTTAGGGGGTGTTTGTTTCC+CGG + chr3_4:79880439-79880458 None:intergenic 50.0%
CTCGCAAAGAAAGCCTTAGG+GGG + chr3_4:79880453-79880472 None:intergenic 50.0%
GCTTTCTTTGCGAGTTCGGA+GGG - chr3_4:79880459-79880478 Msa0526100:intron 50.0%
CTTTCTTTGCGAGTTCGGAG+GGG - chr3_4:79880460-79880479 Msa0526100:intron 50.0%
ATAGAGGACATTGGGAGGAG+AGG - chr3_4:79880529-79880548 Msa0526100:intron 50.0%
TAGAGGACATTGGGAGGAGA+GGG - chr3_4:79880530-79880549 Msa0526100:intron 50.0%
TTAGTTCCCCCAAATGGGGA+GGG + chr3_4:79880590-79880609 None:intergenic 50.0%
! TTTAGTTCCCCCAAATGGGG+AGG + chr3_4:79880591-79880610 None:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG - chr3_4:79880616-79880635 Msa0526100:intron 50.0%
!!! TATTGGAGGAGGGTTTTGGG+GGG - chr3_4:79880617-79880636 Msa0526100:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + chr3_4:79880821-79880840 None:intergenic 50.0%
GGCATTGTTTGCGAGTTTGG+AGG + chr3_4:79880828-79880847 None:intergenic 50.0%
!! AACGCTAGTGAGGGGTATTC+CGG - chr3_4:79881062-79881081 Msa0526100:intron 50.0%
!! CTATGTTGCTTTCTGGTCCC+CGG + chr3_4:79881084-79881103 None:intergenic 50.0%
!! AGTGCGCCTATGTTGCTTTC+TGG + chr3_4:79881091-79881110 None:intergenic 50.0%
!! ACTTTGGAAGCACTACGCCT+CGG - chr3_4:79881108-79881127 Msa0526100:intron 50.0%
TGTTAGGGGAATGATCCAGC+AGG - chr3_4:79881170-79881189 Msa0526100:intron 50.0%
GATCTTGTGCTGAAACCTGC+TGG + chr3_4:79881188-79881207 None:intergenic 50.0%
GGTTTCCTCCTTCTCTTTGC+GGG + chr3_4:79881325-79881344 None:intergenic 50.0%
GGGTTTCCTCCTTCTCTTTG+CGG + chr3_4:79881326-79881345 None:intergenic 50.0%
GTACCCTAAGCAGAAGAAGC+AGG + chr3_4:79881387-79881406 None:intergenic 50.0%
AGGGCAAGGAAAGTAGAGGC+CGG + chr3_4:79878437-79878456 None:intergenic 55.0%
GGGAAGGGCAAGGAAAGTAG+AGG + chr3_4:79878441-79878460 None:intergenic 55.0%
! CTTGCCCTTCCCCGTTTTGA+CGG - chr3_4:79878449-79878468 Msa0526100:three_prime_UTR 55.0%
GGTTCCGTCAAAACGGGGAA+GGG + chr3_4:79878456-79878475 None:intergenic 55.0%
TGGTTCCGTCAAAACGGGGA+AGG + chr3_4:79878457-79878476 None:intergenic 55.0%
TGCGGTGGTTCCGTCAAAAC+GGG + chr3_4:79878462-79878481 None:intergenic 55.0%
!! GGTGTCGACGTGTAAGTGTG+AGG + chr3_4:79878679-79878698 None:intergenic 55.0%
GCAAGCAGGTCTGAATCTGC+TGG - chr3_4:79879090-79879109 Msa0526100:intron 55.0%
CGGGAAACAAACACCCCCTA+AGG - chr3_4:79880437-79880456 Msa0526100:intron 55.0%
GGCTTTCTTTGCGAGTTCGG+AGG - chr3_4:79880458-79880477 Msa0526100:intron 55.0%
TTTGCGAGTTCGGAGGGGAA+GGG - chr3_4:79880465-79880484 Msa0526100:intron 55.0%
! TTGGGAGGAGAGGGCTTTGA+CGG - chr3_4:79880539-79880558 Msa0526100:intron 55.0%
!!! AGGAGGGTTTTGGGGGGTTT+GGG - chr3_4:79880623-79880642 Msa0526100:intron 55.0%
AAGGGAAGGAAGGGCTCTGT+GGG + chr3_4:79880803-79880822 None:intergenic 55.0%
TTGGAGGGGAAGGGAAGGAA+GGG + chr3_4:79880812-79880831 None:intergenic 55.0%
TTTGGAGGGGAAGGGAAGGA+AGG + chr3_4:79880813-79880832 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + chr3_4:79880822-79880841 None:intergenic 55.0%
!! ACGCTAGTGAGGGGTATTCC+GGG - chr3_4:79881063-79881082 Msa0526100:intron 55.0%
CGGGGACCAGAAAGCAACAT+AGG - chr3_4:79881082-79881101 Msa0526100:intron 55.0%
CAGTTCGGTTGCATTTGCCG+AGG + chr3_4:79881128-79881147 None:intergenic 55.0%
GCAACCGAACTGTCATGCGA+TGG - chr3_4:79881136-79881155 Msa0526100:intron 55.0%
GTACAAGGCCCGCAAAGAGA+AGG - chr3_4:79881314-79881333 Msa0526100:intron 55.0%
TGGAGGACGAAGAGCTCTGT+GGG + chr3_4:79881346-79881365 None:intergenic 55.0%
ATGGAGGACGAAGAGCTCTG+TGG + chr3_4:79881347-79881366 None:intergenic 55.0%
CAGAGCTCTTCGTCCTCCAT+TGG - chr3_4:79881347-79881366 Msa0526100:intron 55.0%
GAAGTGACCCGGAGTGGAGT+TGG - chr3_4:79878350-79878369 Msa0526100:three_prime_UTR 60.0%
CGCTAGGGTTGGGGTTGAAG+GGG + chr3_4:79878411-79878430 None:intergenic 60.0%
GCGCTAGGGTTGGGGTTGAA+GGG + chr3_4:79878412-79878431 None:intergenic 60.0%
GCAAGGAAAGTAGAGGCCGG+CGG + chr3_4:79878434-79878453 None:intergenic 60.0%
CGTCAAAACGGGGAAGGGCA+AGG + chr3_4:79878451-79878470 None:intergenic 60.0%
GCGGTGGTTCCGTCAAAACG+GGG + chr3_4:79878461-79878480 None:intergenic 60.0%
TGACGGAACCACCGCATAGG+AGG - chr3_4:79878466-79878485 Msa0526100:three_prime_UTR 60.0%
CTTTGCGAGTTCGGAGGGGA+AGG - chr3_4:79880464-79880483 Msa0526100:intron 60.0%
GAGTTCGGAGGGGAAGGGAA+TGG - chr3_4:79880470-79880489 Msa0526100:intron 60.0%
TTCGGAGGGGAAGGGAATGG+AGG - chr3_4:79880473-79880492 Msa0526100:intron 60.0%
TCGGAGGGGAAGGGAATGGA+GGG - chr3_4:79880474-79880493 Msa0526100:intron 60.0%
GGGGAAGGGAATGGAGGGTT+TGG - chr3_4:79880479-79880498 Msa0526100:intron 60.0%
! TGGGAGGAGAGGGCTTTGAC+GGG - chr3_4:79880540-79880559 Msa0526100:intron 60.0%
!!! GAGGAGGGTTTTGGGGGGTT+TGG - chr3_4:79880622-79880641 Msa0526100:intron 60.0%
!!! AGGGTTTTGGGGGGTTTGGG+AGG - chr3_4:79880626-79880645 Msa0526100:intron 60.0%
!!! GGGTTTTGGGGGGTTTGGGA+GGG - chr3_4:79880627-79880646 Msa0526100:intron 60.0%
AGGGAAGGAAGGGCTCTGTG+GGG + chr3_4:79880802-79880821 None:intergenic 60.0%
GAAGGGAAGGAAGGGCTCTG+TGG + chr3_4:79880804-79880823 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+AGG + chr3_4:79880817-79880836 None:intergenic 60.0%
!! CGCTAGTGAGGGGTATTCCG+GGG - chr3_4:79881064-79881083 Msa0526100:intron 60.0%
CAAGGCCCGCAAAGAGAAGG+AGG - chr3_4:79881317-79881336 Msa0526100:intron 60.0%
AGGGGAGAAGTGACCCGGAG+TGG - chr3_4:79878344-79878363 Msa0526100:three_prime_UTR 65.0%
GGCGCTAGGGTTGGGGTTGA+AGG + chr3_4:79878413-79878432 None:intergenic 65.0%
AACCCCAACCCTAGCGCCGC+CGG - chr3_4:79878415-79878434 Msa0526100:three_prime_UTR 70.0%
AGTAGAGGCCGGCGGCGCTA+GGG + chr3_4:79878426-79878445 None:intergenic 70.0%
AAGTAGAGGCCGGCGGCGCT+AGG + chr3_4:79878427-79878446 None:intergenic 70.0%
AGGCCGGCGGCGCTAGGGTT+GGG + chr3_4:79878421-79878440 None:intergenic 75.0%
! GGCCGGCGGCGCTAGGGTTG+GGG + chr3_4:79878420-79878439 None:intergenic 80.0%
! GAGGCCGGCGGCGCTAGGGT+TGG + chr3_4:79878422-79878441 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 79878236 79881783 79878236 ID=Msa0526100;Name=Msa0526100
chr3_4 mRNA 79878236 79881783 79878236 ID=Msa0526100-mRNA-1;Parent=Msa0526100;Name=Msa0526100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=254|1|1|1|0.5|0.66|3|382|106
chr3_4 exon 79878236 79878740 79878236 ID=Msa0526100-mRNA-1:exon:23952;Parent=Msa0526100-mRNA-1
chr3_4 exon 79878828 79879027 79878828 ID=Msa0526100-mRNA-1:exon:23951;Parent=Msa0526100-mRNA-1
chr3_4 exon 79881532 79881783 79881532 ID=Msa0526100-mRNA-1:exon:23950;Parent=Msa0526100-mRNA-1
chr3_4 five_prime_UTR 79881532 79881783 79881532 ID=Msa0526100-mRNA-1:five_prime_utr;Parent=Msa0526100-mRNA-1
chr3_4 five_prime_UTR 79879026 79879027 79879026 ID=Msa0526100-mRNA-1:five_prime_utr;Parent=Msa0526100-mRNA-1
chr3_4 CDS 79878828 79879025 79878828 ID=Msa0526100-mRNA-1:cds;Parent=Msa0526100-mRNA-1
chr3_4 CDS 79878618 79878740 79878618 ID=Msa0526100-mRNA-1:cds;Parent=Msa0526100-mRNA-1
chr3_4 three_prime_UTR 79878236 79878617 79878236 ID=Msa0526100-mRNA-1:three_prime_utr;Parent=Msa0526100-mRNA-1
Gene Sequence

>Msa0526100

ATGAGCATGAATGCGTTCAAGGCATATAAGTCCTGTGTCCCAATTGCTTATAGCCCCAATCTCTACATAACGCTAGTGAGGGGTATTCCGGGGACCAGAAAGCAACATAGGCGCACTTTGGAAGCACTACGCCTCGGCAAATGCAACCGAACTGTCATGCGATGGAACACACCTACTGTTAGGGGAATGATCCAGCAGGTCAAGAGGTTAGTTGTTGTTGAGACAGAGGAGATGTACAAGGCCCGCAAAGAGAAGGAGGAAACCCACAGAGCTCTTCGTCCTCCATTGGTCATAAACCATCAACCTGCTTCTTCTGCTTAG
Protein sequence

>Msa0526100

MSMNAFKAYKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKEKEETHRALRPPLVINHQPASSA*