AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1233430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233430 MtrunA17_Chr8g0342821 99.578 474 2 0 1 474 1 474 0.0 973
Msa1233430 MtrunA17_Chr2g0329981 83.438 477 74 5 1 474 1 475 0.0 809
Msa1233430 MtrunA17_Chr4g0071031 75.314 478 90 7 1 474 1 454 0.0 690
Msa1233430 MtrunA17_Chr2g0299661 68.723 470 142 4 1 469 1 466 0.0 653
Msa1233430 MtrunA17_Chr1g0183631 60.000 475 155 8 1 465 1 450 0.0 547
Msa1233430 MtrunA17_Chr7g0261501 77.538 325 64 3 1 318 1 323 0.0 540
Msa1233430 MtrunA17_Chr1g0166821 79.180 317 63 2 1 314 2 318 0.0 540
Msa1233430 MtrunA17_Chr1g0187571 79.798 297 59 1 1 296 2 298 0.0 519
Msa1233430 MtrunA17_Chr6g0486611 77.926 299 65 1 1 298 1 299 1.04e-178 507
Msa1233430 MtrunA17_Chr8g0390211 76.589 299 69 1 1 298 1 299 1.41e-174 496
Msa1233430 MtrunA17_Chr3g0140071 65.964 332 106 3 1 326 1 331 3.41e-162 465
Msa1233430 MtrunA17_Chr1g0167261 71.000 300 84 2 1 297 2 301 1.81e-161 460
Msa1233430 MtrunA17_Chr1g0146151 66.144 319 107 1 1 318 1 319 3.62e-160 460
Msa1233430 MtrunA17_Chr7g0214531 37.276 279 157 6 9 272 37 312 5.25e-57 199
Msa1233430 MtrunA17_Chr3g0140431 38.951 267 151 6 9 266 38 301 8.03e-57 198
Msa1233430 MtrunA17_Chr1g0146301 37.828 267 154 6 9 266 124 387 2.65e-56 198
Msa1233430 MtrunA17_Chr1g0213321 37.956 274 157 6 9 272 119 389 8.86e-56 197
Msa1233430 MtrunA17_Chr7g0253211 38.542 288 158 7 4 275 317 601 2.73e-55 198
Msa1233430 MtrunA17_Chr8g0340491 36.957 276 151 8 9 266 128 398 1.24e-50 182
Msa1233430 MtrunA17_Chr5g0405421 27.074 229 151 8 2 222 92 312 1.08e-13 73.2
Msa1233430 MtrunA17_Chr3g0107011 27.197 239 120 11 1 213 5 215 1.06e-11 66.6
Msa1233430 MtrunA17_Chr3g0123141 27.619 210 132 10 11 211 610 808 5.80e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233430 AT1G72710.1 76.170 470 104 6 1 467 1 465 0.0 709
Msa1233430 AT4G26100.1 69.979 473 112 9 1 470 1 446 0.0 652
Msa1233430 AT5G57015.1 69.538 476 101 9 1 474 1 434 0.0 644
Msa1233430 AT2G19470.1 69.533 407 102 5 1 404 1 388 0.0 573
Msa1233430 AT1G03930.1 60.970 474 173 6 1 467 1 469 0.0 542
Msa1233430 AT5G44100.1 82.492 297 51 1 1 296 1 297 0.0 539
Msa1233430 AT5G44100.2 82.492 297 51 1 1 296 1 297 0.0 539
Msa1233430 AT3G23340.1 64.096 415 135 6 1 414 1 402 0.0 531
Msa1233430 AT4G28540.1 73.620 326 78 2 1 318 5 330 0.0 520
Msa1233430 AT4G14340.1 63.260 411 137 5 1 410 7 404 0.0 519
Msa1233430 AT5G43320.1 56.495 485 186 9 1 469 1 476 0.0 517
Msa1233430 AT4G14340.2 78.788 297 62 1 1 296 7 303 0.0 511
Msa1233430 AT1G04440.1 69.940 336 100 1 1 335 1 336 3.31e-179 510
Msa1233430 AT5G43320.2 77.104 297 67 1 1 296 1 297 4.97e-177 501
Msa1233430 AT5G43320.3 77.104 297 67 1 1 296 1 297 4.97e-177 501
Msa1233430 AT4G28880.3 66.479 355 110 3 1 354 1 347 7.78e-176 499
Msa1233430 AT4G28880.2 66.479 355 110 3 1 354 1 347 7.78e-176 499
Msa1233430 AT4G28880.1 66.479 355 110 3 1 354 1 347 7.78e-176 499
Msa1233430 AT4G28880.4 66.479 355 110 3 1 354 1 347 7.78e-176 499
Msa1233430 AT3G23340.2 63.291 395 131 6 21 414 7 388 7.36e-175 498
Msa1233430 AT4G28860.2 69.113 327 99 2 1 326 1 326 3.19e-172 489
Msa1233430 AT4G28860.1 69.113 327 99 2 1 326 1 326 1.42e-171 489
Msa1233430 AT4G08800.1 68.525 305 63 3 1 304 1 273 3.26e-153 437
Msa1233430 AT2G25760.2 39.146 281 153 6 4 266 100 380 4.36e-61 211
Msa1233430 AT2G25760.1 38.434 281 152 7 4 266 100 377 5.71e-58 203
Msa1233430 AT3G03940.1 38.408 289 159 7 4 276 133 418 4.44e-56 198
Msa1233430 AT5G18190.2 38.062 289 160 7 4 276 123 408 5.07e-56 198
Msa1233430 AT5G18190.1 38.062 289 160 7 4 276 123 408 5.07e-56 198
Msa1233430 AT3G13670.1 36.042 283 163 6 9 276 137 416 2.30e-54 194
Msa1233430 AT2G17890.1 25.893 224 150 8 7 222 106 321 7.89e-13 71.2
Msa1233430 AT3G50530.1 25.532 235 135 8 5 218 144 359 6.96e-12 68.2
Msa1233430 AT5G39440.1 29.245 212 128 10 9 212 19 216 2.70e-11 66.2
Msa1233430 AT3G06030.1 26.941 219 134 7 8 212 67 273 6.62e-11 65.1
Msa1233430 AT3G29160.3 29.577 213 127 11 9 212 20 218 6.83e-11 64.3
Msa1233430 AT4G36070.1 25.455 220 148 7 7 218 69 280 9.50e-11 64.3
Msa1233430 AT4G36070.2 25.455 220 148 7 7 218 69 280 9.61e-11 64.3

Find 148 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATCAAACATAAATAATT+TGG 0.143188 8_2:-10202598 Msa1233430:CDS
TTTCTTTATTGTATACTTAT+AGG 0.154065 8_2:+10202379 None:intergenic
GAAGAAGAAAAGGGTATATC+TGG 0.226962 8_2:+10206889 None:intergenic
GACAATTTCCTCATGGGTTT+AGG 0.228856 8_2:-10205473 Msa1233430:CDS
TAACACATGCATACAATTAA+TGG 0.233781 8_2:+10201869 None:intergenic
ATTTATTCAATTTCTGTAAT+AGG 0.238085 8_2:-10205676 Msa1233430:CDS
ATTTGATTATTAATTAATTA+AGG 0.249420 8_2:+10207052 None:intergenic
TTCTTCATTTGTCTGAATAT+TGG 0.261094 8_2:+10206639 None:intergenic
GGAAAAGATGGTAGGAATAT+TGG 0.271839 8_2:-10203126 Msa1233430:CDS
CATATCATTGTGAACTATAT+CGG 0.303394 8_2:-10202215 Msa1233430:three_prime_UTR
AAAATTGGTAGCGGATCTTT+TGG 0.312915 8_2:-10206765 Msa1233430:CDS
CTCACGCTGGATTCAAGTTT+AGG 0.327718 8_2:-10202702 Msa1233430:CDS
TATCTGGGAAATGCTGAAAA+AGG 0.327889 8_2:+10206905 None:intergenic
CTTGCTGCTGGACCGAGTTC+TGG 0.338183 8_2:-10203373 Msa1233430:CDS
ACAATTTCCTCATGGGTTTA+GGG 0.340991 8_2:-10205472 Msa1233430:CDS
TCACATGTAAGCTTGATCTT+TGG 0.350873 8_2:+10202053 None:intergenic
AACAAAACTAGCCTCGTAAA+AGG 0.358968 8_2:-10202336 Msa1233430:three_prime_UTR
GAAAAGATGGTAGGAATATT+GGG 0.370564 8_2:-10203125 Msa1233430:CDS
ATGAATACTCATCTTGGAAT+TGG 0.372690 8_2:-10204300 Msa1233430:intron
ACAATAAAGAAAATATGTTT+TGG 0.374535 8_2:-10202368 Msa1233430:three_prime_UTR
ATTAAACCCTAATTGAAAAT+CGG 0.386169 8_2:+10206825 None:intergenic
ACCTCAGTGACCGACAATAA+TGG 0.388781 8_2:+10203823 None:intergenic
TTTCTGCAGTCTACCTTGGC+AGG 0.394985 8_2:-10204055 Msa1233430:intron
TATCGAGTTCGAATTTCTTT+CGG 0.396736 8_2:-10202809 Msa1233430:CDS
CACTTACAGGGTCTTGCTGC+TGG 0.397023 8_2:-10203385 Msa1233430:intron
CTTCATACTTCCATTATTGT+CGG 0.399001 8_2:-10203833 Msa1233430:CDS
AATCGAAGACATAATCAAAC+TGG 0.405895 8_2:+10203550 None:intergenic
CCAAACCTTCACGGATGAAT+AGG 0.413827 8_2:+10203754 None:intergenic
GGTTTAATGGAACCTCGAAT+TGG 0.417126 8_2:-10206810 Msa1233430:exon
ATATCATTGTGAACTATATC+GGG 0.417397 8_2:-10202214 Msa1233430:three_prime_UTR
ATGCCATAAAAGTACCTATA+GGG 0.418213 8_2:+10205276 None:intergenic
TCAGAATTTACAAGGAAGAA+AGG 0.421192 8_2:+10202496 None:intergenic
ACTGGAATGGAGCGAGTAAC+GGG 0.428025 8_2:-10202029 Msa1233430:three_prime_UTR
AATTTGGATTCAACGCTTAG+AGG 0.429713 8_2:-10202582 Msa1233430:CDS
GCTAGTATGAATACTCATCT+TGG 0.435171 8_2:-10204306 Msa1233430:CDS
AAGATTCCATCATTAGCAAT+AGG 0.437123 8_2:+10203063 None:intergenic
TTGGAAATAAGTTCCGTCTT+GGG 0.443286 8_2:-10206791 Msa1233430:CDS
CGTCATCGTAGAAGAAGAAA+AGG 0.445616 8_2:+10206879 None:intergenic
GACAAAATATCTTGTGTAAG+TGG 0.446487 8_2:-10201894 Msa1233430:three_prime_UTR
ACACCGGACCATTTCACATT+CGG 0.447768 8_2:+10205752 None:intergenic
CACCATAGCATCTTTAGATC+CGG 0.452993 8_2:+10203005 None:intergenic
ATACAACAATTGAGGGTGCT+TGG 0.454552 8_2:+10205928 None:intergenic
TCTTATGCTTGCCGATCAAA+TGG 0.457248 8_2:-10205633 Msa1233430:intron
AGTTTGATTATGTCTTCGAT+TGG 0.461696 8_2:-10203548 Msa1233430:CDS
TTTGCTTCATACAACAATTG+AGG 0.464158 8_2:+10205920 None:intergenic
TCTGGACCTATTGCTAATGA+TGG 0.466720 8_2:-10203069 Msa1233430:CDS
TTGCTTCATACAACAATTGA+GGG 0.471529 8_2:+10205921 None:intergenic
ATCCTTGTGATGGATTTACT+TGG 0.473724 8_2:-10205713 Msa1233430:CDS
CCACTTACAAATGACTTAAC+CGG 0.474625 8_2:-10203024 Msa1233430:CDS
GAAAGTTTCTACATCTATTG+AGG 0.478508 8_2:-10203983 Msa1233430:intron
CTGGAATACCGAATGTGAAA+TGG 0.479886 8_2:-10205760 Msa1233430:CDS
GCAAATGCTGATGGACAGTC+AGG 0.482487 8_2:-10203334 Msa1233430:intron
GTGTTTGTAATTTGTTGTAA+TGG 0.486115 8_2:-10201945 Msa1233430:three_prime_UTR
CCCACTCGAAGGAGAACCTC+TGG 0.486536 8_2:-10203087 Msa1233430:CDS
CCGGTTAAGTCATTTGTAAG+TGG 0.488016 8_2:+10203024 None:intergenic
ATTGGAAATAAGTTCCGTCT+TGG 0.488327 8_2:-10206792 Msa1233430:CDS
GAGCACAACCGAGTATCATC+TGG 0.489104 8_2:-10202627 Msa1233430:CDS
CGGTTAAGTCATTTGTAAGT+GGG 0.492030 8_2:+10203025 None:intergenic
CTAGCTTCTGCAAATGCTGA+TGG 0.497772 8_2:-10203343 Msa1233430:CDS
AGGGATGATTTAGAGTCGCT+TGG 0.498396 8_2:-10204180 Msa1233430:CDS
GGTATTTCTGCAGTCTACCT+TGG 0.499822 8_2:-10204059 Msa1233430:intron
TCGAATTTCTTTCGGTCAAG+TGG 0.500221 8_2:-10202801 Msa1233430:CDS
CACATCAGCATATTCCCTAT+AGG 0.500725 8_2:-10205290 Msa1233430:intron
TTTACTTGGCCCTAGTCTTG+AGG 0.502228 8_2:-10205699 Msa1233430:CDS
CGGAACTTATTTCCAATTCG+AGG 0.504125 8_2:+10206798 None:intergenic
ATCAAGCTTACATGTGAGAC+TGG 0.504186 8_2:-10202047 Msa1233430:three_prime_UTR
TGTTTCTTCCAGATGATACT+CGG 0.516048 8_2:+10202619 None:intergenic
AAGCCAGACAATTTCCTCAT+GGG 0.517628 8_2:-10205479 Msa1233430:CDS
TAGGTGTACATCATTGACTT+TGG 0.518918 8_2:-10205339 Msa1233430:CDS
TTGAATAAATCCTCAAGACT+AGG 0.522442 8_2:+10205689 None:intergenic
CTCCTCTCGTCCTCTCACGC+TGG 0.525433 8_2:-10202715 Msa1233430:CDS
AAGAAGAAAAGGGTATATCT+GGG 0.527099 8_2:+10206890 None:intergenic
GACTGGAATGGAGCGAGTAA+CGG 0.528568 8_2:-10202030 Msa1233430:three_prime_UTR
GTTTCTCTCTACTGTAATTG+TGG 0.528903 8_2:-10202093 Msa1233430:three_prime_UTR
AAGAAAACAAATGATAGTAA+AGG 0.529240 8_2:+10202269 None:intergenic
TCTTCCTTGTAAATTCTGAA+AGG 0.531260 8_2:-10202492 Msa1233430:three_prime_UTR
AAACCCATGAGGAAATTGTC+TGG 0.531680 8_2:+10205476 None:intergenic
GGAGCAGTCCGTAAAAGCTC+TGG 0.533818 8_2:-10202681 Msa1233430:CDS
AACCGGATCTAAAGATGCTA+TGG 0.540198 8_2:-10203007 Msa1233430:intron
TAAACCTTTCAGAATTTACA+AGG 0.541737 8_2:+10202488 None:intergenic
AAAGCCAGACAATTTCCTCA+TGG 0.544831 8_2:-10205480 Msa1233430:CDS
TGAATAAATCCTCAAGACTA+GGG 0.545896 8_2:+10205690 None:intergenic
TTCTGCAGTCTACCTTGGCA+GGG 0.547539 8_2:-10204054 Msa1233430:intron
AAACAAGGCCCAAACCTTCA+CGG 0.553845 8_2:+10203745 None:intergenic
CAGCGTGAGAGGACGAGAGG+AGG 0.553851 8_2:+10202716 None:intergenic
CGTGACCTATTCATCCGTGA+AGG 0.553976 8_2:-10203759 Msa1233430:intron
CAGAGAGAATAAGAATCTGA+CGG 0.555069 8_2:-10204343 Msa1233430:CDS
AGCGTGAGAGGACGAGAGGA+GGG 0.556937 8_2:+10202717 None:intergenic
GAAGTATGAAGCAAATTCTG+AGG 0.560679 8_2:+10203845 None:intergenic
TGTGTAGGTGGTGGAAAAGA+TGG 0.562910 8_2:-10203138 Msa1233430:intron
GTGAAATGGTCCGGTGTGGA+AGG 0.568781 8_2:-10205746 Msa1233430:CDS
AAACTTGAATCCAGCGTGAG+AGG 0.575553 8_2:+10202705 None:intergenic
TCCAGAGGTTCTCCTTCGAG+TGG 0.576149 8_2:+10203086 None:intergenic
AAGTTCACATATCATGTCAT+CGG 0.576819 8_2:-10202649 Msa1233430:CDS
AGAGTACAACATCCTTGTGA+TGG 0.579202 8_2:-10205723 Msa1233430:CDS
AGCAGCCGTGATGCAGCTGT+TGG 0.579930 8_2:-10202753 Msa1233430:CDS
ATCATTAGCAATAGGTCCAG+AGG 0.580010 8_2:+10203071 None:intergenic
AGGGAAACCCACCATTTGAT+CGG 0.583445 8_2:+10205622 None:intergenic
CCTTGGCAGGGATTGAAAGC+AGG 0.584404 8_2:-10204042 Msa1233430:CDS
AGAGAGAATAAGAATCTGAC+GGG 0.585309 8_2:-10204342 Msa1233430:CDS
CTTTGCTAGTCTCTCTGCCG+TGG 0.586144 8_2:-10203873 Msa1233430:intron
CTTTAATAGAGCAAAGCCGT+AGG 0.589565 8_2:-10204200 Msa1233430:intron
TTGATCGGCAAGCATAAGAA+CGG 0.592423 8_2:+10205637 None:intergenic
ATACCGAATGTGAAATGGTC+CGG 0.593452 8_2:-10205755 Msa1233430:CDS
GCTTACATGTGAGACTGGAA+TGG 0.595249 8_2:-10202042 Msa1233430:three_prime_UTR
ACCATCACTTACAATACCAC+GGG 0.602147 8_2:+10203482 None:intergenic
TTTAATAGAGCAAAGCCGTA+GGG 0.604857 8_2:-10204199 Msa1233430:intron
CACCATCACTTACAATACCA+CGG 0.605886 8_2:+10203481 None:intergenic
GGTTAAGTCATTTGTAAGTG+GGG 0.606360 8_2:+10203026 None:intergenic
GTCTGCATTTAAACGATGAG+AGG 0.609688 8_2:-10202551 Msa1233430:CDS
CTTCGTCTGATCCCACTCGA+AGG 0.610986 8_2:-10203098 Msa1233430:CDS
AAGCTGTATAAAATACTGCA+AGG 0.612393 8_2:-10205899 Msa1233430:CDS
ATCGCCACTCCTCCTTCCCG+TGG 0.613928 8_2:-10203498 Msa1233430:CDS
TCACAAAGTGCGGAGTGGAG+TGG 0.616198 8_2:-10202456 Msa1233430:three_prime_UTR
CCTGCTTTCAATCCCTGCCA+AGG 0.616580 8_2:+10204042 None:intergenic
CCAGAGGTTCTCCTTCGAGT+GGG 0.619887 8_2:+10203087 None:intergenic
ATCCAGCGTGAGAGGACGAG+AGG 0.620493 8_2:+10202713 None:intergenic
TCCATTATTGTCGGTCACTG+AGG 0.621842 8_2:-10203824 Msa1233430:CDS
TTCGGTCAAGTGGATCTGCA+AGG 0.626728 8_2:-10202791 Msa1233430:CDS
TGCAGCTGTTGGCAGTGAGA+CGG 0.627439 8_2:-10202742 Msa1233430:CDS
ATTTCCTCATGGGTTTAGGG+AGG 0.628140 8_2:-10205469 Msa1233430:CDS
CTTACAATACCACGGGAAGG+AGG 0.631667 8_2:+10203489 None:intergenic
AATACCACGGGAAGGAGGAG+TGG 0.634617 8_2:+10203494 None:intergenic
TCTGCATTTAAACGATGAGA+GGG 0.635819 8_2:-10202550 Msa1233430:CDS
AAGTATGAAGCAAATTCTGA+GGG 0.637275 8_2:+10203846 None:intergenic
GCGACTCTAAATCATCCCTA+CGG 0.637624 8_2:+10204184 None:intergenic
TCAAGTGGATCTGCAAGGCG+AGG 0.638769 8_2:-10202786 Msa1233430:CDS
TCAGCATTTGCAGAAGCTAG+CGG 0.639218 8_2:+10203346 None:intergenic
TACAGTAGAGAGAAACGCGG+TGG 0.641361 8_2:+10202100 None:intergenic
GTCATCGTAGAAGAAGAAAA+GGG 0.644208 8_2:+10206880 None:intergenic
TAGGTGGTGGAAAAGATGGT+AGG 0.644820 8_2:-10203134 Msa1233430:CDS
ACAGTAGAGAGAAACGCGGT+GGG 0.646446 8_2:+10202101 None:intergenic
GCTAGCGGCAGACCAGAACT+CGG 0.647842 8_2:+10203361 None:intergenic
GTTGTACTCTCCTTCCACAC+CGG 0.649985 8_2:+10205736 None:intergenic
CACTGCCAACAGCTGCATCA+CGG 0.650486 8_2:+10202748 None:intergenic
TATCATTGTGAACTATATCG+GGG 0.650629 8_2:-10202213 Msa1233430:three_prime_UTR
ATCATTGTGAACTATATCGG+GGG 0.657737 8_2:-10202212 Msa1233430:three_prime_UTR
CTGGAATGGAGCGAGTAACG+GGG 0.663375 8_2:-10202028 Msa1233430:three_prime_UTR
GGCCAAGTAAATCCATCACA+AGG 0.666479 8_2:+10205711 None:intergenic
TCACTTACAATACCACGGGA+AGG 0.675431 8_2:+10203486 None:intergenic
CAAATTCTGAGGGATAGCCA+CGG 0.686783 8_2:+10203856 None:intergenic
ACAACAAATTACAAACACAA+CGG 0.687735 8_2:+10201950 None:intergenic
GAATGTGAAATGGTCCGGTG+TGG 0.716403 8_2:-10205750 Msa1233430:CDS
CACGCCTCCCTAAACCCATG+AGG 0.721724 8_2:+10205465 None:intergenic
AAGATGGTAGGAATATTGGG+TGG 0.729848 8_2:-10203122 Msa1233430:CDS
CTGTATAAAATACTGCAAGG+AGG 0.737729 8_2:-10205896 Msa1233430:CDS
TATGCTTTATATCATCCCTG+AGG 0.757607 8_2:+10202234 None:intergenic
AATTACAGTAGAGAGAAACG+CGG 0.835990 8_2:+10202097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTCTTTTGAATTTT+TGG - chr8_2:10202333-10202352 Msa1233430:three_prime_UTR 10.0%
!!! TCCTATTTATATTTTATTTT+TGG - chr8_2:10205167-10205186 Msa1233430:intron 10.0%
!! TCCAAAAATAAAATATAAAT+AGG + chr8_2:10205171-10205190 None:intergenic 10.0%
!!! TTAAGTTATTTAATTTTTAG+TGG - chr8_2:10205467-10205486 Msa1233430:CDS 10.0%
!!! AATATTTTTCATTTTCTTAA+CGG + chr8_2:10207053-10207072 None:intergenic 10.0%
!!! TCATTTTCTTTTTCAAAATT+CGG + chr8_2:10202299-10202318 None:intergenic 15.0%
!! AAATAAAGTAATGATTGATT+AGG - chr8_2:10202662-10202681 Msa1233430:CDS 15.0%
!! TAAATTTACAAACTGATATT+TGG - chr8_2:10202742-10202761 Msa1233430:CDS 15.0%
!! ATTTATTCAATTTCTGTAAT+AGG - chr8_2:10203213-10203232 Msa1233430:intron 15.0%
!!! TTTTGTAAAATCTATTATCA+TGG - chr8_2:10203723-10203742 Msa1233430:intron 15.0%
!!! TGAATCCTTTAATATTATTT+TGG - chr8_2:10204102-10204121 Msa1233430:intron 15.0%
!! GATTACCAAAATAATATTAA+AGG + chr8_2:10204110-10204129 None:intergenic 15.0%
!! AAAAACTAATTGATACTTAA+TGG + chr8_2:10204231-10204250 None:intergenic 15.0%
!! GTGAATAAAAAGTTATTAAA+AGG - chr8_2:10204325-10204344 Msa1233430:CDS 15.0%
!!! AATGATTTTAAAAGACATAA+TGG + chr8_2:10204978-10204997 None:intergenic 15.0%
!! AAAATATAAATAGGAAAACA+AGG + chr8_2:10205162-10205181 None:intergenic 15.0%
!! TTTCTTTATTGTATACTTAT+AGG + chr8_2:10206513-10206532 None:intergenic 15.0%
!!! ACAATAAAGAAAATATGTTT+TGG - chr8_2:10206521-10206540 Msa1233430:intron 15.0%
!! GTTAAGAAAATGAAAAATAT+TGG - chr8_2:10207052-10207071 Msa1233430:five_prime_UTR 15.0%
!! ATTAAACCCTAATTGAAAAT+CGG + chr8_2:10202067-10202086 None:intergenic 20.0%
!!! TTTTTGTTGTTGTGAATTTT+AGG - chr8_2:10202198-10202217 Msa1233430:three_prime_UTR 20.0%
!!! TTTTGTTGTTGTGAATTTTA+GGG - chr8_2:10202199-10202218 Msa1233430:three_prime_UTR 20.0%
!!! CATTTTCTTTTTCAAAATTC+GGG + chr8_2:10202298-10202317 None:intergenic 20.0%
!!! TCAATAACAACAAAAGTATT+CGG + chr8_2:10202371-10202390 None:intergenic 20.0%
!! AAACAAAGAGTTGTATATAT+GGG - chr8_2:10202465-10202484 Msa1233430:three_prime_UTR 20.0%
!!! ATTTTTGTTTTGTTTGATTC+AGG - chr8_2:10202926-10202945 Msa1233430:intron 20.0%
!! AGTTATTATGTTTGTAAGTA+TGG + chr8_2:10204067-10204086 None:intergenic 20.0%
!! TTGATTGTATACCTATTATA+TGG + chr8_2:10204163-10204182 None:intergenic 20.0%
!! GAATTTATGCCAATTAAATT+TGG - chr8_2:10204349-10204368 Msa1233430:intron 20.0%
!! AATAAATAATCGTAAAGACT+AGG + chr8_2:10204428-10204447 None:intergenic 20.0%
!!! GTTCTTATGTATTTTTTAAG+AGG - chr8_2:10204736-10204755 Msa1233430:intron 20.0%
!!! TTATGTATTTTTTAAGAGGA+AGG - chr8_2:10204740-10204759 Msa1233430:intron 20.0%
!! TGTCAAATGCTAAATAATAA+AGG + chr8_2:10204780-10204799 None:intergenic 20.0%
!!! CATTTGACATATCTTTTAAT+TGG - chr8_2:10204791-10204810 Msa1233430:intron 20.0%
!!! TTTAAAATCATTGTTGATTG+TGG - chr8_2:10204986-10205005 Msa1233430:intron 20.0%
!!! TTAAAATCATTGTTGATTGT+GGG - chr8_2:10204987-10205006 Msa1233430:intron 20.0%
!!! TTTTTTCTTTGTCATAGTTT+AGG - chr8_2:10205254-10205273 Msa1233430:intron 20.0%
!! TAACAAATGAAAATCATTCA+AGG + chr8_2:10205704-10205723 None:intergenic 20.0%
!! CACATCAAACATAAATAATT+TGG - chr8_2:10206291-10206310 Msa1233430:intron 20.0%
!!! ATAAAGAAAATATGTTTTGG+TGG - chr8_2:10206524-10206543 Msa1233430:intron 20.0%
!! AAGAAAACAAATGATAGTAA+AGG + chr8_2:10206623-10206642 None:intergenic 20.0%
!! TTCAATTCCGATTTTCAATT+AGG - chr8_2:10202057-10202076 Msa1233430:three_prime_UTR 25.0%
!! TCAATTCCGATTTTCAATTA+GGG - chr8_2:10202058-10202077 Msa1233430:three_prime_UTR 25.0%
!! GATTTTCAATTAGGGTTTAA+TGG - chr8_2:10202066-10202085 Msa1233430:three_prime_UTR 25.0%
! ATCACAAAAATGCAAGAAAT+TGG + chr8_2:10202177-10202196 None:intergenic 25.0%
!!! TTAATTTGTGTTTTTGTTGC+AGG - chr8_2:10202225-10202244 Msa1233430:three_prime_UTR 25.0%
! TTCTTCATTTGTCTGAATAT+TGG + chr8_2:10202253-10202272 None:intergenic 25.0%
! TTATTGAAGTTTGATGAGAA+GGG - chr8_2:10202384-10202403 Msa1233430:three_prime_UTR 25.0%
! GAAACAAAGAGTTGTATATA+TGG - chr8_2:10202464-10202483 Msa1233430:three_prime_UTR 25.0%
! TATGGGATATTGAATTTCAT+TGG - chr8_2:10202482-10202501 Msa1233430:three_prime_UTR 25.0%
! TCAGTTAAGTTAATGATTAC+TGG - chr8_2:10202635-10202654 Msa1233430:CDS 25.0%
! TATAACTTCAAATACCAAAC+CGG + chr8_2:10202700-10202719 None:intergenic 25.0%
! ATACACAAATTCACTAAGTT+GGG + chr8_2:10203028-10203047 None:intergenic 25.0%
! AATACACAAATTCACTAAGT+TGG + chr8_2:10203029-10203048 None:intergenic 25.0%
!! CTTAGTGAATTTGTGTATTT+TGG - chr8_2:10203030-10203049 Msa1233430:CDS 25.0%
!!! TTGGCTTAAATGTTTTTTGT+TGG - chr8_2:10203088-10203107 Msa1233430:CDS 25.0%
!!! TGGCTTAAATGTTTTTTGTT+GGG - chr8_2:10203089-10203108 Msa1233430:CDS 25.0%
! TTGAGACATTATAAGAAAAC+TGG + chr8_2:10203322-10203341 None:intergenic 25.0%
!!! ATACCAAGTCATTTTTACAT+CGG - chr8_2:10203381-10203400 Msa1233430:intron 25.0%
!! TTTTCTGATTTTATTCAGCA+TGG - chr8_2:10203642-10203661 Msa1233430:intron 25.0%
!! CAAAATAAGAAAGCATGATA+GGG + chr8_2:10203708-10203727 None:intergenic 25.0%
!! ACAAAATAAGAAAGCATGAT+AGG + chr8_2:10203709-10203728 None:intergenic 25.0%
! AATTTGGACATCCATATAAT+AGG - chr8_2:10204149-10204168 Msa1233430:intron 25.0%
! CCAATGAAACCAAATTTAAT+TGG + chr8_2:10204361-10204380 None:intergenic 25.0%
!! CCAATTAAATTTGGTTTCAT+TGG - chr8_2:10204358-10204377 Msa1233430:intron 25.0%
! AATCAATGGCTATTAAGAAA+GGG + chr8_2:10204644-10204663 None:intergenic 25.0%
! AAATCAATGGCTATTAAGAA+AGG + chr8_2:10204645-10204664 None:intergenic 25.0%
!!! CATTTTCAGGTAAAAATCAA+TGG + chr8_2:10204658-10204677 None:intergenic 25.0%
! ATTGGATACTCTTTCTTATT+TGG - chr8_2:10204809-10204828 Msa1233430:intron 25.0%
! AAAGAGAAGTTAAAACAACA+AGG + chr8_2:10205584-10205603 None:intergenic 25.0%
! TCCAACATCATATATGATTA+AGG - chr8_2:10206029-10206048 Msa1233430:intron 25.0%
! TCCTTAATCATATATGATGT+TGG + chr8_2:10206033-10206052 None:intergenic 25.0%
! TAAACCTTTCAGAATTTACA+AGG + chr8_2:10206404-10206423 None:intergenic 25.0%
! AGGTTACGAAAAATATTCAT+CGG + chr8_2:10206603-10206622 None:intergenic 25.0%
! CATATCATTGTGAACTATAT+CGG - chr8_2:10206674-10206693 Msa1233430:intron 25.0%
! ATATCATTGTGAACTATATC+GGG - chr8_2:10206675-10206694 Msa1233430:intron 25.0%
! ACAACAAATTACAAACACAA+CGG + chr8_2:10206942-10206961 None:intergenic 25.0%
!!! GTGTTTGTAATTTGTTGTAA+TGG - chr8_2:10206944-10206963 Msa1233430:five_prime_UTR 25.0%
! TAACACATGCATACAATTAA+TGG + chr8_2:10207023-10207042 None:intergenic 25.0%
!! ATTTTTCATTTTCTTAACGG+TGG + chr8_2:10207050-10207069 None:intergenic 25.0%
AAATTCCAAAAAACAGCGTT+AGG - chr8_2:10201856-10201875 Msa1233430:three_prime_UTR 30.0%
GAAAAAGGAAAGGACAAAAT+AGG + chr8_2:10201972-10201991 None:intergenic 30.0%
! AAGAAGAAAAGGGTATATCT+GGG + chr8_2:10202002-10202021 None:intergenic 30.0%
!! TCTTTTGGAGAGATCTATTT+AGG - chr8_2:10202139-10202158 Msa1233430:three_prime_UTR 30.0%
GTTATTGAAGTTTGATGAGA+AGG - chr8_2:10202383-10202402 Msa1233430:three_prime_UTR 30.0%
TATTGAAGTTTGATGAGAAG+GGG - chr8_2:10202385-10202404 Msa1233430:three_prime_UTR 30.0%
TAATCGATACTTCGATTACA+AGG + chr8_2:10202550-10202569 None:intergenic 30.0%
AGGTAATTAGATGATTGATC+AGG - chr8_2:10202577-10202596 Msa1233430:CDS 30.0%
TGATTAACCAAGTCTGATTA+TGG + chr8_2:10202618-10202637 None:intergenic 30.0%
TTGCTTCATACAACAATTGA+GGG + chr8_2:10202971-10202990 None:intergenic 30.0%
TTTGCTTCATACAACAATTG+AGG + chr8_2:10202972-10202991 None:intergenic 30.0%
AAGCTGTATAAAATACTGCA+AGG - chr8_2:10202990-10203009 Msa1233430:intron 30.0%
TAGACTTCATATTACTCACT+TGG - chr8_2:10203069-10203088 Msa1233430:CDS 30.0%
! TTTGTTGGGTTTCTTTTCTT+TGG - chr8_2:10203103-10203122 Msa1233430:CDS 30.0%
TGAATAAATCCTCAAGACTA+GGG + chr8_2:10203202-10203221 None:intergenic 30.0%
TTGAATAAATCCTCAAGACT+AGG + chr8_2:10203203-10203222 None:intergenic 30.0%
TTACAAGCTTATGCAATACA+GGG + chr8_2:10203289-10203308 None:intergenic 30.0%
ATTACAAGCTTATGCAATAC+AGG + chr8_2:10203290-10203309 None:intergenic 30.0%
!!! TACCAAGTCATTTTTACATC+GGG - chr8_2:10203382-10203401 Msa1233430:intron 30.0%
TTCATATTTGCCTCTTATGT+AGG - chr8_2:10203531-10203550 Msa1233430:CDS 30.0%
! ATTCCCTATAGGTACTTTTA+TGG - chr8_2:10203610-10203629 Msa1233430:intron 30.0%
!! ATGCCATAAAAGTACCTATA+GGG + chr8_2:10203616-10203635 None:intergenic 30.0%
ATGATAGGGAATATATCGAT+GGG + chr8_2:10203694-10203713 None:intergenic 30.0%
ATCATGGAAAATCCTATATC+TGG - chr8_2:10203739-10203758 Msa1233430:intron 30.0%
! AAAATCCTATATCTGGAATC+TGG - chr8_2:10203746-10203765 Msa1233430:intron 30.0%
GCTGATTACTACTATTTAGT+AGG - chr8_2:10203802-10203821 Msa1233430:CDS 30.0%
GATTACTACTATTTAGTAGG+AGG - chr8_2:10203805-10203824 Msa1233430:CDS 30.0%
AAGAAAATAGAATCAATGCC+AGG + chr8_2:10203930-10203949 None:intergenic 30.0%
AATGGATCTTAGTTCAAACA+AGG + chr8_2:10204040-10204059 None:intergenic 30.0%
ATAACTTATGTTGCTGTAAG+TGG - chr8_2:10204466-10204485 Msa1233430:intron 30.0%
ATGAATACTCATCTTGGAAT+TGG - chr8_2:10204589-10204608 Msa1233430:intron 30.0%
! AGCAAAAAACTCACATTTTC+AGG + chr8_2:10204671-10204690 None:intergenic 30.0%
GAAAGTTTCTACATCTATTG+AGG - chr8_2:10204906-10204925 Msa1233430:intron 30.0%
TACATCTATTGAGGTATGAT+TGG - chr8_2:10204915-10204934 Msa1233430:intron 30.0%
AAGTATGAAGCAAATTCTGA+GGG + chr8_2:10205046-10205065 None:intergenic 30.0%
CTTCATACTTCCATTATTGT+CGG - chr8_2:10205056-10205075 Msa1233430:intron 30.0%
! CTTTTCAGATAAGCATAATC+TGG + chr8_2:10205103-10205122 None:intergenic 30.0%
! AACCTAAACTATGGTTTTCA+AGG + chr8_2:10205209-10205228 None:intergenic 30.0%
!! TCATAGTTTAGGTTCTAGAT+GGG - chr8_2:10205265-10205284 Msa1233430:intron 30.0%
AATCGAAGACATAATCAAAC+TGG + chr8_2:10205342-10205361 None:intergenic 30.0%
AGTTTGATTATGTCTTCGAT+TGG - chr8_2:10205341-10205360 Msa1233430:intron 30.0%
!!! TACCAGTGCATTTTTTAATG+TGG - chr8_2:10205722-10205741 Msa1233430:CDS 30.0%
GAAAAGATGGTAGGAATATT+GGG - chr8_2:10205764-10205783 Msa1233430:intron 30.0%
AAGATTCCATCATTAGCAAT+AGG + chr8_2:10205829-10205848 None:intergenic 30.0%
! TATGGTGCGTGTTTTATATA+TGG - chr8_2:10205900-10205919 Msa1233430:CDS 30.0%
! ATGGTGCGTGTTTTATATAT+GGG - chr8_2:10205901-10205920 Msa1233430:CDS 30.0%
TATCGAGTTCGAATTTCTTT+CGG - chr8_2:10206080-10206099 Msa1233430:intron 30.0%
AAGTTCACATATCATGTCAT+CGG - chr8_2:10206240-10206259 Msa1233430:intron 30.0%
TCAGAATTTACAAGGAAGAA+AGG + chr8_2:10206396-10206415 None:intergenic 30.0%
TCTTCCTTGTAAATTCTGAA+AGG - chr8_2:10206397-10206416 Msa1233430:intron 30.0%
! ATACTCATTTTCACAAAGTG+CGG - chr8_2:10206423-10206442 Msa1233430:intron 30.0%
!!! TCTTTGATATTTTTAGCCTC+AGG - chr8_2:10206639-10206658 Msa1233430:CDS 30.0%
!!! CTTTGATATTTTTAGCCTCA+GGG - chr8_2:10206640-10206659 Msa1233430:CDS 30.0%
TATCATTGTGAACTATATCG+GGG - chr8_2:10206676-10206695 Msa1233430:intron 30.0%
! TTTTTGACAGAAGCTATTTG+TGG + chr8_2:10206901-10206920 None:intergenic 30.0%
GACAAAATATCTTGTGTAAG+TGG - chr8_2:10206995-10207014 Msa1233430:five_prime_UTR 30.0%
TATCTGGGAAATGCTGAAAA+AGG + chr8_2:10201987-10202006 None:intergenic 35.0%
! GAAGAAGAAAAGGGTATATC+TGG + chr8_2:10202003-10202022 None:intergenic 35.0%
GTCATCGTAGAAGAAGAAAA+GGG + chr8_2:10202012-10202031 None:intergenic 35.0%
ATTGGAAATAAGTTCCGTCT+TGG - chr8_2:10202097-10202116 Msa1233430:three_prime_UTR 35.0%
TTGGAAATAAGTTCCGTCTT+GGG - chr8_2:10202098-10202117 Msa1233430:three_prime_UTR 35.0%
! TACCAATTTTTCTCCCAAGA+CGG + chr8_2:10202114-10202133 None:intergenic 35.0%
!!! AAAATTGGTAGCGGATCTTT+TGG - chr8_2:10202124-10202143 Msa1233430:three_prime_UTR 35.0%
GTAATCACCATAATCAGACT+TGG - chr8_2:10202608-10202627 Msa1233430:CDS 35.0%
! GATTAGGTGATGTTGATTAC+CGG - chr8_2:10202678-10202697 Msa1233430:CDS 35.0%
CTGTATAAAATACTGCAAGG+AGG - chr8_2:10202993-10203012 Msa1233430:intron 35.0%
!! ATCCTTGTGATGGATTTACT+TGG - chr8_2:10203176-10203195 Msa1233430:intron 35.0%
ACAATTTCCTCATGGGTTTA+GGG - chr8_2:10203417-10203436 Msa1233430:intron 35.0%
AACTGATACATAACAAGCGT+TGG + chr8_2:10203512-10203531 None:intergenic 35.0%
ATGATGTACACCTACATAAG+AGG + chr8_2:10203544-10203563 None:intergenic 35.0%
!! TAGGTGTACATCATTGACTT+TGG - chr8_2:10203550-10203569 Msa1233430:CDS 35.0%
!! GATGCCATAAAAGTACCTAT+AGG + chr8_2:10203617-10203636 None:intergenic 35.0%
TGATAGGGAATATATCGATG+GGG + chr8_2:10203693-10203712 None:intergenic 35.0%
CATGATAGGGAATATATCGA+TGG + chr8_2:10203695-10203714 None:intergenic 35.0%
AACATCCAGATTCCAGATAT+AGG + chr8_2:10203754-10203773 None:intergenic 35.0%
! AACTAATTTTGAGCTTTGCG+CGG - chr8_2:10203882-10203901 Msa1233430:intron 35.0%
GGCTAACAAAACTATCATCA+AGG + chr8_2:10204019-10204038 None:intergenic 35.0%
GTTTGTAAGTATGGCATCAA+TGG + chr8_2:10204058-10204077 None:intergenic 35.0%
GATTCTTATTCTCTCTGCAA+GGG + chr8_2:10204543-10204562 None:intergenic 35.0%
AGATTCTTATTCTCTCTGCA+AGG + chr8_2:10204544-10204563 None:intergenic 35.0%
CAGAGAGAATAAGAATCTGA+CGG - chr8_2:10204546-10204565 Msa1233430:intron 35.0%
AGAGAGAATAAGAATCTGAC+GGG - chr8_2:10204547-10204566 Msa1233430:intron 35.0%
GCTAGTATGAATACTCATCT+TGG - chr8_2:10204583-10204602 Msa1233430:intron 35.0%
TTTAATAGAGCAAAGCCGTA+GGG - chr8_2:10204690-10204709 Msa1233430:intron 35.0%
GAAGTATGAAGCAAATTCTG+AGG + chr8_2:10205047-10205066 None:intergenic 35.0%
GTCCTTGAAAACCATAGTTT+AGG - chr8_2:10205204-10205223 Msa1233430:intron 35.0%
!! ACCATAGTTTAGGTTCTAGA+TGG - chr8_2:10205214-10205233 Msa1233430:intron 35.0%
!! CCATAGTTTAGGTTCTAGAT+GGG - chr8_2:10205215-10205234 Msa1233430:intron 35.0%
!! GTCATAGTTTAGGTTCTAGA+TGG - chr8_2:10205264-10205283 Msa1233430:intron 35.0%
ACATAATCAAACTGGAATCC+TGG + chr8_2:10205334-10205353 None:intergenic 35.0%
CACCACATTAAAAAATGCAC+TGG + chr8_2:10205727-10205746 None:intergenic 35.0%
GGAAAAGATGGTAGGAATAT+TGG - chr8_2:10205763-10205782 Msa1233430:CDS 35.0%
GGTTAAGTCATTTGTAAGTG+GGG + chr8_2:10205866-10205885 None:intergenic 35.0%
CGGTTAAGTCATTTGTAAGT+GGG + chr8_2:10205867-10205886 None:intergenic 35.0%
CCACTTACAAATGACTTAAC+CGG - chr8_2:10205865-10205884 Msa1233430:intron 35.0%
TGTTTCTTCCAGATGATACT+CGG + chr8_2:10206273-10206292 None:intergenic 35.0%
AATTTGGATTCAACGCTTAG+AGG - chr8_2:10206307-10206326 Msa1233430:intron 35.0%
TCTGCATTTAAACGATGAGA+GGG - chr8_2:10206339-10206358 Msa1233430:intron 35.0%
AGAAAAAGCTGCAAGCAAAT+TGG - chr8_2:10206479-10206498 Msa1233430:intron 35.0%
GAAAAAGCTGCAAGCAAATT+GGG - chr8_2:10206480-10206499 Msa1233430:intron 35.0%
!!! TTTACGAGGCTAGTTTTGTT+AGG + chr8_2:10206553-10206572 None:intergenic 35.0%
! AACAAAACTAGCCTCGTAAA+AGG - chr8_2:10206553-10206572 Msa1233430:intron 35.0%
TATGCTTTATATCATCCCTG+AGG + chr8_2:10206658-10206677 None:intergenic 35.0%
ATCATTGTGAACTATATCGG+GGG - chr8_2:10206677-10206696 Msa1233430:intron 35.0%
AATTACAGTAGAGAGAAACG+CGG + chr8_2:10206795-10206814 None:intergenic 35.0%
GTTTCTCTCTACTGTAATTG+TGG - chr8_2:10206796-10206815 Msa1233430:CDS 35.0%
TCACATGTAAGCTTGATCTT+TGG + chr8_2:10206839-10206858 None:intergenic 35.0%
TTCCAAAAAACAGCGTTAGG+TGG - chr8_2:10201859-10201878 Msa1233430:three_prime_UTR 40.0%
!!! TACCACCTAACGCTGTTTTT+TGG + chr8_2:10201864-10201883 None:intergenic 40.0%
GGGAAATGCTGAAAAAGGAA+AGG + chr8_2:10201982-10202001 None:intergenic 40.0%
CGTCATCGTAGAAGAAGAAA+AGG + chr8_2:10202013-10202032 None:intergenic 40.0%
GGTTTAATGGAACCTCGAAT+TGG - chr8_2:10202079-10202098 Msa1233430:three_prime_UTR 40.0%
CGGAACTTATTTCCAATTCG+AGG + chr8_2:10202094-10202113 None:intergenic 40.0%
TTCCGTCTTGGGAGAAAAAT+TGG - chr8_2:10202109-10202128 Msa1233430:three_prime_UTR 40.0%
CTTGGGAGAAAAATTGGTAG+CGG - chr8_2:10202115-10202134 Msa1233430:three_prime_UTR 40.0%
!! GAAGTATCGATTACAGACGT+AGG - chr8_2:10202557-10202576 Msa1233430:CDS 40.0%
! GATGATTGATCAGGTTAGTC+AGG - chr8_2:10202586-10202605 Msa1233430:CDS 40.0%
!! ATACAACAATTGAGGGTGCT+TGG + chr8_2:10202964-10202983 None:intergenic 40.0%
!! GGTTTCTTTTCTTTGGAAGC+TGG - chr8_2:10203110-10203129 Msa1233430:CDS 40.0%
CTGGAATACCGAATGTGAAA+TGG - chr8_2:10203129-10203148 Msa1233430:CDS 40.0%
ATACCGAATGTGAAATGGTC+CGG - chr8_2:10203134-10203153 Msa1233430:CDS 40.0%
AGAGTACAACATCCTTGTGA+TGG - chr8_2:10203166-10203185 Msa1233430:intron 40.0%
TTGATCGGCAAGCATAAGAA+CGG + chr8_2:10203255-10203274 None:intergenic 40.0%
TCTTATGCTTGCCGATCAAA+TGG - chr8_2:10203256-10203275 Msa1233430:intron 40.0%
GTCCCGATGTAAAAATGACT+TGG + chr8_2:10203387-10203406 None:intergenic 40.0%
AAAGCCAGACAATTTCCTCA+TGG - chr8_2:10203409-10203428 Msa1233430:intron 40.0%
AAGCCAGACAATTTCCTCAT+GGG - chr8_2:10203410-10203429 Msa1233430:intron 40.0%
AAACCCATGAGGAAATTGTC+TGG + chr8_2:10203416-10203435 None:intergenic 40.0%
GACAATTTCCTCATGGGTTT+AGG - chr8_2:10203416-10203435 Msa1233430:intron 40.0%
CACATCAGCATATTCCCTAT+AGG - chr8_2:10203599-10203618 Msa1233430:intron 40.0%
! ACTAATTTTGAGCTTTGCGC+GGG - chr8_2:10203883-10203902 Msa1233430:intron 40.0%
ACTGGTGTAACAATCATGCA+AGG + chr8_2:10203981-10204000 None:intergenic 40.0%
AGGCAAATAGCTTAACGAAC+TGG + chr8_2:10203999-10204018 None:intergenic 40.0%
TATGTTGCTGTAAGTGGTCA+AGG - chr8_2:10204472-10204491 Msa1233430:intron 40.0%
CTTTAATAGAGCAAAGCCGT+AGG - chr8_2:10204689-10204708 Msa1233430:intron 40.0%
CTATTCATCCGTGAAGGTTT+GGG - chr8_2:10205136-10205155 Msa1233430:intron 40.0%
! CCCATCTAGAACCTAAACTA+TGG + chr8_2:10205218-10205237 None:intergenic 40.0%
ACCATCACTTACAATACCAC+GGG + chr8_2:10205410-10205429 None:intergenic 40.0%
CACCATCACTTACAATACCA+CGG + chr8_2:10205411-10205430 None:intergenic 40.0%
AGTGACAATGTGACACTTAC+AGG - chr8_2:10205491-10205510 Msa1233430:CDS 40.0%
GTGACAATGTGACACTTACA+GGG - chr8_2:10205492-10205511 Msa1233430:CDS 40.0%
GGATGAGTCAGATGACAAAA+AGG + chr8_2:10205683-10205702 None:intergenic 40.0%
AAGATGGTAGGAATATTGGG+TGG - chr8_2:10205767-10205786 Msa1233430:intron 40.0%
ATCATTAGCAATAGGTCCAG+AGG + chr8_2:10205821-10205840 None:intergenic 40.0%
TCTGGACCTATTGCTAATGA+TGG - chr8_2:10205820-10205839 Msa1233430:intron 40.0%
CCGGTTAAGTCATTTGTAAG+TGG + chr8_2:10205868-10205887 None:intergenic 40.0%
AACCGGATCTAAAGATGCTA+TGG - chr8_2:10205882-10205901 Msa1233430:intron 40.0%
CACCATAGCATCTTTAGATC+CGG + chr8_2:10205887-10205906 None:intergenic 40.0%
CTTGCAGAAGTCAAAGATGA+TGG - chr8_2:10205954-10205973 Msa1233430:intron 40.0%
TCGAATTTCTTTCGGTCAAG+TGG - chr8_2:10206088-10206107 Msa1233430:intron 40.0%
! TATGAGCACCAGAGCTTTTA+CGG + chr8_2:10206219-10206238 None:intergenic 40.0%
GTCTGCATTTAAACGATGAG+AGG - chr8_2:10206338-10206357 Msa1233430:intron 40.0%
! ATGAACAGAAGCCTTTTACG+AGG + chr8_2:10206567-10206586 None:intergenic 40.0%
ATCAAGCTTACATGTGAGAC+TGG - chr8_2:10206842-10206861 Msa1233430:five_prime_UTR 40.0%
! GGTGATGTTGATTACCGGTT+TGG - chr8_2:10202683-10202702 Msa1233430:CDS 45.0%
ACACCGGACCATTTCACATT+CGG + chr8_2:10203140-10203159 None:intergenic 45.0%
GGCCAAGTAAATCCATCACA+AGG + chr8_2:10203181-10203200 None:intergenic 45.0%
!! TTTACTTGGCCCTAGTCTTG+AGG - chr8_2:10203190-10203209 Msa1233430:intron 45.0%
TATGCTTGCCGATCAAATGG+TGG - chr8_2:10203259-10203278 Msa1233430:intron 45.0%
ATGCTTGCCGATCAAATGGT+GGG - chr8_2:10203260-10203279 Msa1233430:intron 45.0%
AGGGAAACCCACCATTTGAT+CGG + chr8_2:10203270-10203289 None:intergenic 45.0%
ATTTCCTCATGGGTTTAGGG+AGG - chr8_2:10203420-10203439 Msa1233430:intron 45.0%
! CTAATTTTGAGCTTTGCGCG+GGG - chr8_2:10203884-10203903 Msa1233430:intron 45.0%
!!! CTTTCCTGGTTTTGCATTCC+TGG - chr8_2:10203909-10203928 Msa1233430:intron 45.0%
AATGCCAGGAATGCAAAACC+AGG + chr8_2:10203916-10203935 None:intergenic 45.0%
TATTACACACCCCAGAGAGA+GGG + chr8_2:10204397-10204416 None:intergenic 45.0%
ATATTACACACCCCAGAGAG+AGG + chr8_2:10204398-10204417 None:intergenic 45.0%
GCGACTCTAAATCATCCCTA+CGG + chr8_2:10204708-10204727 None:intergenic 45.0%
! AGGGATGATTTAGAGTCGCT+TGG - chr8_2:10204709-10204728 Msa1233430:intron 45.0%
! GGTATTTCTGCAGTCTACCT+TGG - chr8_2:10204830-10204849 Msa1233430:intron 45.0%
! CAAATTCTGAGGGATAGCCA+CGG + chr8_2:10205036-10205055 None:intergenic 45.0%
TCCATTATTGTCGGTCACTG+AGG - chr8_2:10205065-10205084 Msa1233430:intron 45.0%
ACCTCAGTGACCGACAATAA+TGG + chr8_2:10205069-10205088 None:intergenic 45.0%
CCAAACCTTCACGGATGAAT+AGG + chr8_2:10205138-10205157 None:intergenic 45.0%
CCTATTCATCCGTGAAGGTT+TGG - chr8_2:10205135-10205154 Msa1233430:intron 45.0%
AAACAAGGCCCAAACCTTCA+CGG + chr8_2:10205147-10205166 None:intergenic 45.0%
TCACTTACAATACCACGGGA+AGG + chr8_2:10205406-10205425 None:intergenic 45.0%
TCCCGTGGTATTGTAAGTGA+TGG - chr8_2:10205406-10205425 Msa1233430:intron 45.0%
TGCTGTCTCATTACGTTAGC+TGG - chr8_2:10205431-10205450 Msa1233430:intron 45.0%
TCAGCATTTGCAGAAGCTAG+CGG + chr8_2:10205546-10205565 None:intergenic 45.0%
CTAGCTTCTGCAAATGCTGA+TGG - chr8_2:10205546-10205565 Msa1233430:intron 45.0%
TTAATGTGGTGCCTCTGTGT+AGG - chr8_2:10205736-10205755 Msa1233430:CDS 45.0%
!! TGTGTAGGTGGTGGAAAAGA+TGG - chr8_2:10205751-10205770 Msa1233430:CDS 45.0%
!! TAGGTGGTGGAAAAGATGGT+AGG - chr8_2:10205755-10205774 Msa1233430:CDS 45.0%
AAACTTGAATCCAGCGTGAG+AGG + chr8_2:10206187-10206206 None:intergenic 45.0%
! CTCACGCTGGATTCAAGTTT+AGG - chr8_2:10206187-10206206 Msa1233430:intron 45.0%
! CATTTTCACAAAGTGCGGAG+TGG - chr8_2:10206428-10206447 Msa1233430:intron 45.0%
GCTTACATGTGAGACTGGAA+TGG - chr8_2:10206847-10206866 Msa1233430:five_prime_UTR 45.0%
!! ATTTGATTATTAATTAATTA+AGG + chr8_2:10201840-10201859 None:intergenic 5.0%
!!! TATAATTTTTTTAGATAATT+TGG - chr8_2:10204133-10204152 Msa1233430:intron 5.0%
GAATGTGAAATGGTCCGGTG+TGG - chr8_2:10203139-10203158 Msa1233430:intron 50.0%
GTTGTACTCTCCTTCCACAC+CGG + chr8_2:10203156-10203175 None:intergenic 50.0%
TTTCTGCAGTCTACCTTGGC+AGG - chr8_2:10204834-10204853 Msa1233430:intron 50.0%
TTCTGCAGTCTACCTTGGCA+GGG - chr8_2:10204835-10204854 Msa1233430:intron 50.0%
CGTGACCTATTCATCCGTGA+AGG - chr8_2:10205130-10205149 Msa1233430:intron 50.0%
! TGTTCTTGCCTTGTTGCTCC+AGG - chr8_2:10205313-10205332 Msa1233430:CDS 50.0%
ACTGGAATCCTGGAGCAACA+AGG + chr8_2:10205324-10205343 None:intergenic 50.0%
CTTACAATACCACGGGAAGG+AGG + chr8_2:10205403-10205422 None:intergenic 50.0%
! GCAAATGCTGATGGACAGTC+AGG - chr8_2:10205555-10205574 Msa1233430:intron 50.0%
! CTTTTCCACCACCTACACAG+AGG + chr8_2:10205750-10205769 None:intergenic 50.0%
TTCGGTCAAGTGGATCTGCA+AGG - chr8_2:10206098-10206117 Msa1233430:intron 50.0%
GAGCACAACCGAGTATCATC+TGG - chr8_2:10206262-10206281 Msa1233430:intron 50.0%
ACAGTAGAGAGAAACGCGGT+GGG + chr8_2:10206791-10206810 None:intergenic 50.0%
TACAGTAGAGAGAAACGCGG+TGG + chr8_2:10206792-10206811 None:intergenic 50.0%
GACTGGAATGGAGCGAGTAA+CGG - chr8_2:10206859-10206878 Msa1233430:five_prime_UTR 50.0%
ACTGGAATGGAGCGAGTAAC+GGG - chr8_2:10206860-10206879 Msa1233430:five_prime_UTR 50.0%
GTGAAATGGTCCGGTGTGGA+AGG - chr8_2:10203143-10203162 Msa1233430:intron 55.0%
CCTGCTTTCAATCCCTGCCA+AGG + chr8_2:10204850-10204869 None:intergenic 55.0%
CCTTGGCAGGGATTGAAAGC+AGG - chr8_2:10204847-10204866 Msa1233430:intron 55.0%
! CTTTGCTAGTCTCTCTGCCG+TGG - chr8_2:10205016-10205035 Msa1233430:intron 55.0%
AATACCACGGGAAGGAGGAG+TGG + chr8_2:10205398-10205417 None:intergenic 55.0%
CACTTACAGGGTCTTGCTGC+TGG - chr8_2:10205504-10205523 Msa1233430:CDS 55.0%
ATGTGGTGCCTCTGTGTAGG+TGG - chr8_2:10205739-10205758 Msa1233430:CDS 55.0%
CTTCGTCTGATCCCACTCGA+AGG - chr8_2:10205791-10205810 Msa1233430:intron 55.0%
CCAGAGGTTCTCCTTCGAGT+GGG + chr8_2:10205805-10205824 None:intergenic 55.0%
TCCAGAGGTTCTCCTTCGAG+TGG + chr8_2:10205806-10205825 None:intergenic 55.0%
TCAAGTGGATCTGCAAGGCG+AGG - chr8_2:10206103-10206122 Msa1233430:intron 55.0%
CACTGCCAACAGCTGCATCA+CGG + chr8_2:10206144-10206163 None:intergenic 55.0%
TGCAGCTGTTGGCAGTGAGA+CGG - chr8_2:10206147-10206166 Msa1233430:intron 55.0%
GGAGCAGTCCGTAAAAGCTC+TGG - chr8_2:10206208-10206227 Msa1233430:intron 55.0%
TCACAAAGTGCGGAGTGGAG+TGG - chr8_2:10206433-10206452 Msa1233430:intron 55.0%
CTGGAATGGAGCGAGTAACG+GGG - chr8_2:10206861-10206880 Msa1233430:five_prime_UTR 55.0%
CACGCCTCCCTAAACCCATG+AGG + chr8_2:10203427-10203446 None:intergenic 60.0%
CTTTGCGCGGGGAACTTTCC+TGG - chr8_2:10203895-10203914 Msa1233430:intron 60.0%
CCAGAGAGAGGGAGAGAGTC+GGG + chr8_2:10204386-10204405 None:intergenic 60.0%
CCCAGAGAGAGGGAGAGAGT+CGG + chr8_2:10204387-10204406 None:intergenic 60.0%
CCGACTCTCTCCCTCTCTCT+GGG - chr8_2:10204384-10204403 Msa1233430:intron 60.0%
CGACTCTCTCCCTCTCTCTG+GGG - chr8_2:10204385-10204404 Msa1233430:intron 60.0%
CTTGCTGCTGGACCGAGTTC+TGG - chr8_2:10205516-10205535 Msa1233430:CDS 60.0%
GCTAGCGGCAGACCAGAACT+CGG + chr8_2:10205531-10205550 None:intergenic 60.0%
TGGTGCCTCTGTGTAGGTGG+TGG - chr8_2:10205742-10205761 Msa1233430:CDS 60.0%
CCCACTCGAAGGAGAACCTC+TGG - chr8_2:10205802-10205821 Msa1233430:intron 60.0%
AGCAGCCGTGATGCAGCTGT+TGG - chr8_2:10206136-10206155 Msa1233430:intron 60.0%
AGCGTGAGAGGACGAGAGGA+GGG + chr8_2:10206175-10206194 None:intergenic 60.0%
ATCCAGCGTGAGAGGACGAG+AGG + chr8_2:10206179-10206198 None:intergenic 60.0%
CCCGACTCTCTCCCTCTCTC+TGG - chr8_2:10204383-10204402 Msa1233430:intron 65.0%
ATCGCCACTCCTCCTTCCCG+TGG - chr8_2:10205391-10205410 Msa1233430:intron 65.0%
CAGCGTGAGAGGACGAGAGG+AGG + chr8_2:10206176-10206195 None:intergenic 65.0%
CTCCTCTCGTCCTCTCACGC+TGG - chr8_2:10206174-10206193 Msa1233430:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 10201799 10207112 10201799 ID=Msa1233430;Name=Msa1233430
chr8_2 mRNA 10201799 10207112 10201799 ID=Msa1233430-mRNA-1;Parent=Msa1233430;Name=Msa1233430-mRNA-1;_AED=0.18;_eAED=0.18;_QI=286|1|1|1|1|1|14|740|474
chr8_2 exon 10201799 10202832 10201799 ID=Msa1233430-mRNA-1:exon:4032;Parent=Msa1233430-mRNA-1
chr8_2 exon 10203008 10203153 10203008 ID=Msa1233430-mRNA-1:exon:4031;Parent=Msa1233430-mRNA-1
chr8_2 exon 10203335 10203398 10203335 ID=Msa1233430-mRNA-1:exon:4030;Parent=Msa1233430-mRNA-1
chr8_2 exon 10203494 10203576 10203494 ID=Msa1233430-mRNA-1:exon:4029;Parent=Msa1233430-mRNA-1
chr8_2 exon 10203760 10203886 10203760 ID=Msa1233430-mRNA-1:exon:4028;Parent=Msa1233430-mRNA-1
chr8_2 exon 10203984 10204068 10203984 ID=Msa1233430-mRNA-1:exon:4027;Parent=Msa1233430-mRNA-1
chr8_2 exon 10204150 10204213 10204150 ID=Msa1233430-mRNA-1:exon:4026;Parent=Msa1233430-mRNA-1
chr8_2 exon 10204301 10204362 10204301 ID=Msa1233430-mRNA-1:exon:4025;Parent=Msa1233430-mRNA-1
chr8_2 exon 10205291 10205358 10205291 ID=Msa1233430-mRNA-1:exon:4024;Parent=Msa1233430-mRNA-1
chr8_2 exon 10205457 10205552 10205457 ID=Msa1233430-mRNA-1:exon:4023;Parent=Msa1233430-mRNA-1
chr8_2 exon 10205634 10205782 10205634 ID=Msa1233430-mRNA-1:exon:4022;Parent=Msa1233430-mRNA-1
chr8_2 exon 10205894 10205963 10205894 ID=Msa1233430-mRNA-1:exon:4021;Parent=Msa1233430-mRNA-1
chr8_2 exon 10206624 10206664 10206624 ID=Msa1233430-mRNA-1:exon:4020;Parent=Msa1233430-mRNA-1
chr8_2 exon 10206751 10207112 10206751 ID=Msa1233430-mRNA-1:exon:4019;Parent=Msa1233430-mRNA-1
chr8_2 five_prime_UTR 10206827 10207112 10206827 ID=Msa1233430-mRNA-1:five_prime_utr;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10206751 10206826 10206751 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10206624 10206664 10206624 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10205894 10205963 10205894 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10205634 10205782 10205634 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10205457 10205552 10205457 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10205291 10205358 10205291 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10204301 10204362 10204301 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10204150 10204213 10204150 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10203984 10204068 10203984 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10203760 10203886 10203760 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10203494 10203576 10203494 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10203335 10203398 10203335 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10203008 10203153 10203008 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 CDS 10202539 10202832 10202539 ID=Msa1233430-mRNA-1:cds;Parent=Msa1233430-mRNA-1
chr8_2 three_prime_UTR 10201799 10202538 10201799 ID=Msa1233430-mRNA-1:three_prime_utr;Parent=Msa1233430-mRNA-1
Gene Sequence

>Msa1233430

ATGGAACCTCGAATTGGAAATAAGTTCCGTCTTGGGAGAAAAATTGGTAGCGGATCTTTTGGAGAGATCTATTTAGGTACCAATATTCAGACAAATGAAGAAGTTGCGATTAAGCTTGAAAATGTTAAAACCAAGCACCCTCAATTGTTGTATGAAGCAAAGCTGTATAAAATACTGCAAGGAGGAACTGGAATACCGAATGTGAAATGGTCCGGTGTGGAAGGAGAGTACAACATCCTTGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAATAGGAAATTGTCTCTCAAAACCGTTCTTATGCTTGCCGATCAAATGATAAATCGAGTTGAATTTGTTCATACCAAGTCATTTTTACATCGGGACATAAAGCCAGACAATTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTACATCATTGACTTTGGTCTTGCTAAGAAATTCAGAGACAGTGCACATCAGCATATTCCCTATAGAGAGAATAAGAATCTGACGGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCGCTTGGATATGTTCTTATGTATTTTTTAAGAGGAAGTCTACCTTGGCAGGGATTGAAAGCAGGTACTAAAAAGCAGAAGTATGAGAGAATCAGTGAGAAGAAAGTTTCTACATCTATTGAGTCTCTCTGCCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTATTGTCGGTCACTGAGGTTTGATGATAAGCCAGATTATGCTTATCTGAAAAGACTTTTGCGTGACCTATTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTCGATTGGACTATCTTGAAATATCAGCAGTCTCAAATCGCCACTCCTCCTTCCCGTGGTATTGGTCTTGCTGCTGGACCGAGTTCTGGTCTGCCGCTAGCTTCTGCAAATGCTGATGGACAGTCAGGTGGTGGAAAAGATGGTAGGAATATTGGGTGGTCTTCGTCTGATCCCACTCGAAGGAGAACCTCTGGACCTATTGCTAATGATGGAATCTTATCTAGAGAAAAAGCCCCACTTACAAATGACTTAACCGGATCTAAAGATGCTATGTTATCGAGTTCGAATTTCTTTCGGTCAAGTGGATCTGCAAGGCGAGGTGCTATGTTAAGCAGCCGTGATGCAGCTGTTGGCAGTGAGACGGAGCCCTCCTCTCGTCCTCTCACGCTGGATTCAAGTTTAGGAGCAGTCCGTAAAAGCTCTGGTGCTCATAGAAGTTCACATATCATGTCATCGGAGCACAACCGAGTATCATCTGGAAGAAACACATCAAACATAAATAATTTGGATTCAACGCTTAGAGGTATTGAGAGTCTGCATTTAAACGATGAGAGGGCACAGTATTAG

Protein sequence

>Msa1233430

MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYEAKLYKILQGGTGIPNVKWSGVEGEYNILVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFVHTKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKFRDSAHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIATPPSRGIGLAAGPSSGLPLASANADGQSGGGKDGRNIGWSSSDPTRRRTSGPIANDGILSREKAPLTNDLTGSKDAMLSSSNFFRSSGSARRGAMLSSRDAAVGSETEPSSRPLTLDSSLGAVRKSSGAHRSSHIMSSEHNRVSSGRNTSNINNLDSTLRGIESLHLNDERAQY*