Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233870 | XP_003610307.1 | 96.939 | 98 | 2 | 1 | 78 | 175 | 76 | 172 | 1.12e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233870 | sp|Q9M098|EBFC1_ARATH | 82.979 | 94 | 15 | 1 | 82 | 175 | 69 | 161 | 7.93e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233870 | G7JFM1 | 96.939 | 98 | 2 | 1 | 78 | 175 | 76 | 172 | 5.36e-58 | 189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657970 | Msa1233870 | 0.812669 | 3.774647e-51 | -8.615850e-47 |
| Msa0661870 | Msa1233870 | 0.801169 | 1.022307e-48 | -8.615850e-47 |
| Msa1020720 | Msa1233870 | 0.800448 | 1.434408e-48 | -8.615850e-47 |
| Msa1082500 | Msa1233870 | 0.810608 | 1.059190e-50 | -8.615850e-47 |
| Msa1172670 | Msa1233870 | 0.819239 | 1.289466e-52 | -8.615850e-47 |
| Msa0936270 | Msa1233870 | 0.802273 | 6.066939e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233870 | MtrunA17_Chr4g0073861 | 96.939 | 98 | 2 | 1 | 78 | 175 | 76 | 172 | 1.03e-61 | 189 |
| Msa1233870 | MtrunA17_Chr2g0305661 | 58.537 | 164 | 46 | 5 | 26 | 175 | 13 | 168 | 6.90e-53 | 166 |
| Msa1233870 | MtrunA17_Chr4g0073841 | 90.541 | 74 | 7 | 0 | 1 | 74 | 17 | 90 | 1.03e-42 | 145 |
| Msa1233870 | MtrunA17_Chr4g0073261 | 60.870 | 69 | 18 | 1 | 6 | 74 | 23 | 82 | 4.31e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233870 | AT4G30620.1 | 82.979 | 94 | 15 | 1 | 82 | 175 | 69 | 161 | 8.06e-50 | 159 |
| Msa1233870 | AT2G24020.1 | 81.915 | 94 | 16 | 1 | 82 | 175 | 70 | 162 | 1.79e-48 | 155 |
| Msa1233870 | AT2G24020.2 | 81.915 | 94 | 16 | 1 | 82 | 175 | 68 | 160 | 2.24e-48 | 155 |
Find 45 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGACGAGCCTTATGAAAT+TGG | 0.208867 | 8_2:-10954340 | Msa1233870:CDS |
| AGTCACAGAGGCTTACATTA+AGG | 0.296471 | 8_2:-10951851 | Msa1233870:CDS |
| AGTGATCTTGCTCAGAGTTT+AGG | 0.315621 | 8_2:-10951701 | Msa1233870:exon |
| ACCGAGGCTGCTATGGAATT+AGG | 0.336676 | 8_2:-10952169 | Msa1233870:CDS |
| TCACAACTCCACTCTTCCTT+TGG | 0.340735 | 8_2:+10954304 | None:intergenic |
| ATTTCATAAGGCTCGTCATT+AGG | 0.345456 | 8_2:+10954343 | None:intergenic |
| TCTCACTCGTGGCTTTGATT+TGG | 0.375387 | 8_2:+10954275 | None:intergenic |
| GTACATATGCATTTATGAAA+TGG | 0.385316 | 8_2:+10951606 | None:intergenic |
| CTATGCAGAGCCGAGTTTGA+TGG | 0.393847 | 8_2:-10952549 | Msa1233870:intron |
| GCAAGATCACTCATCCTTCA+TGG | 0.394486 | 8_2:+10951713 | None:intergenic |
| AAGCACAAGGCCAAGGAAGC+AGG | 0.394860 | 8_2:-10954223 | Msa1233870:CDS |
| TTCTTCAAACCAATTTCATA+AGG | 0.405524 | 8_2:+10954331 | None:intergenic |
| ACAAATTACCGAGGCTGCTA+TGG | 0.426700 | 8_2:-10952176 | Msa1233870:CDS |
| GTATCCGATTTGATTCTACT+TGG | 0.436674 | 8_2:+10952682 | None:intergenic |
| GGCTCGTCATTAGGAGCATC+AGG | 0.436835 | 8_2:+10954352 | None:intergenic |
| GGAAGATTGATAAGTGCAAC+AGG | 0.444425 | 8_2:-10954192 | Msa1233870:CDS |
| CTGTGAGGGTGAGTTAATAA+AGG | 0.456581 | 8_2:-10952523 | Msa1233870:intron |
| TCGGTAATTTGTGTTCGTAC+AGG | 0.488513 | 8_2:+10952187 | None:intergenic |
| TGATTATAGGGCGGAATGCT+CGG | 0.498257 | 8_2:-10952762 | Msa1233870:intron |
| AGCACAAGGCCAAGGAAGCA+GGG | 0.500528 | 8_2:-10954222 | Msa1233870:CDS |
| TTAGGAATGCCACCAGGTCT+CGG | 0.506708 | 8_2:-10951683 | Msa1233870:three_prime_UTR |
| TCCTAATTCCATAGCAGCCT+CGG | 0.521629 | 8_2:+10952168 | None:intergenic |
| TCTGTTCGAGACTGTGAAGA+AGG | 0.525704 | 8_2:-10952718 | Msa1233870:CDS |
| GGCTTGAATGCTCATCTGAA+TGG | 0.527599 | 8_2:-10954250 | Msa1233870:CDS |
| TTGTCCAAGTAGAATCAAAT+CGG | 0.528710 | 8_2:-10952686 | Msa1233870:CDS |
| ATGCCACCAGGTCTCGGTGA+AGG | 0.535474 | 8_2:-10951677 | Msa1233870:three_prime_UTR |
| GGCGGAATGCTCGGTCAGCT+CGG | 0.544938 | 8_2:-10952753 | Msa1233870:CDS |
| TGCCACCAGGTCTCGGTGAA+GGG | 0.550963 | 8_2:-10951676 | Msa1233870:three_prime_UTR |
| TTCAACCCTTCACCGAGACC+TGG | 0.556038 | 8_2:+10951671 | None:intergenic |
| TGCACACCAGAAGAGTGTCC+AGG | 0.557903 | 8_2:-10951827 | Msa1233870:intron |
| TGCTGAAAAGATTACTGAAG+CGG | 0.566990 | 8_2:-10954155 | Msa1233870:intron |
| TGGCAAGAAGCACAAGGCCA+AGG | 0.574163 | 8_2:-10954230 | Msa1233870:CDS |
| GACTGTGAAGAAGGCGCAGG+CGG | 0.578245 | 8_2:-10952709 | Msa1233870:CDS |
| ATCAAAGCCACGAGTGAGAG+TGG | 0.583066 | 8_2:-10954271 | Msa1233870:CDS |
| CTCACAGTAACCATCAAACT+CGG | 0.600828 | 8_2:+10952539 | None:intergenic |
| CGAGACTGTGAAGAAGGCGC+AGG | 0.604007 | 8_2:-10952712 | Msa1233870:CDS |
| GGTTGAAGTGATGACAGAGA+AGG | 0.611077 | 8_2:-10951655 | Msa1233870:three_prime_UTR |
| CAGAGTTTAGGAATGCCACC+AGG | 0.628036 | 8_2:-10951689 | Msa1233870:three_prime_UTR |
| GAGTTTGATGGTTACTGTGA+GGG | 0.628368 | 8_2:-10952537 | Msa1233870:CDS |
| TCTGAATGGCAAGAAGCACA+AGG | 0.637711 | 8_2:-10954236 | Msa1233870:CDS |
| AACCCTTCACCGAGACCTGG+TGG | 0.649082 | 8_2:+10951674 | None:intergenic |
| ATTCAAGCCACTCTCACTCG+TGG | 0.655211 | 8_2:+10954264 | None:intergenic |
| GAAGTGATGACAGAGAAGGA+TGG | 0.670547 | 8_2:-10951651 | Msa1233870:three_prime_UTR |
| CGAGTTTGATGGTTACTGTG+AGG | 0.677449 | 8_2:-10952538 | Msa1233870:CDS |
| TGTACGAACACAAATTACCG+AGG | 0.748644 | 8_2:-10952185 | Msa1233870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATACACATACAAAAAA+AGG | - | chr8_2:10952504-10952523 | Msa1233870:intron | 15.0% |
| !! | TCGTAATATTCATAATATAA+GGG | - | chr8_2:10953164-10953183 | Msa1233870:intron | 15.0% |
| !!! | GTAAATTCTTTGATTTTTTT+AGG | - | chr8_2:10953964-10953983 | Msa1233870:intron | 15.0% |
| !!! | ACTTTTCAATAATCTAAATA+TGG | - | chr8_2:10954038-10954057 | Msa1233870:intron | 15.0% |
| !! | ATTTGATATTTAAACATCTT+TGG | - | chr8_2:10954074-10954093 | Msa1233870:intron | 15.0% |
| !! | TTTGATATTTAAACATCTTT+GGG | - | chr8_2:10954075-10954094 | Msa1233870:intron | 15.0% |
| !! | ATAGCTCACTATATTTATTT+AGG | + | chr8_2:10952141-10952160 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr8_2:10952461-10952480 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr8_2:10952462-10952481 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr8_2:10952463-10952482 | None:intergenic | 20.0% |
| !!! | ATTTTATAAGGTTCTTAGTT+AGG | - | chr8_2:10952855-10952874 | Msa1233870:intron | 20.0% |
| !!! | TTTTATATTTCGGAAAATGT+TGG | - | chr8_2:10953024-10953043 | Msa1233870:intron | 20.0% |
| !!! | CAATTTTTAATTTGATGGAT+TGG | + | chr8_2:10953100-10953119 | None:intergenic | 20.0% |
| !! | GTCGTAATATTCATAATATA+AGG | - | chr8_2:10953163-10953182 | Msa1233870:intron | 20.0% |
| !! | ATTCATAATATAAGGGTAAT+TGG | - | chr8_2:10953171-10953190 | Msa1233870:intron | 20.0% |
| !! | ATAATATAATAGATCTGCAA+TGG | - | chr8_2:10953626-10953645 | Msa1233870:intron | 20.0% |
| !!! | TTGTTTACTTGATTTTGATT+AGG | - | chr8_2:10953723-10953742 | Msa1233870:intron | 20.0% |
| !!! | TTTGATTAGGTTTAATTTTC+AGG | - | chr8_2:10953736-10953755 | Msa1233870:intron | 20.0% |
| !! | AATAAGATTAGACCTTAAAA+AGG | - | chr8_2:10953913-10953932 | Msa1233870:intron | 20.0% |
| !!! | TATTTTTGTTCACCTTTTTA+AGG | + | chr8_2:10953928-10953947 | None:intergenic | 20.0% |
| !! | TTAAAAAGGTGAACAAAAAT+AGG | - | chr8_2:10953927-10953946 | Msa1233870:intron | 20.0% |
| ! | TTCTTCAAACCAATTTCATA+AGG | + | chr8_2:10951641-10951660 | None:intergenic | 25.0% |
| ! | TTGTTAATACAGCAAAGTTA+GGG | - | chr8_2:10951840-10951859 | Msa1233870:CDS | 25.0% |
| ! | TCTCACAAAATCTAAAAAAG+AGG | - | chr8_2:10951943-10951962 | Msa1233870:intron | 25.0% |
| ! | GTATTATTACTAATACGAAC+CGG | + | chr8_2:10952119-10952138 | None:intergenic | 25.0% |
| ! | AGAACATGAACAAAGAAATT+AGG | + | chr8_2:10952184-10952203 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr8_2:10952451-10952470 | None:intergenic | 25.0% |
| ! | CATACAAAAAAAGGACAATT+TGG | - | chr8_2:10952513-10952532 | Msa1233870:intron | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | - | chr8_2:10952586-10952605 | Msa1233870:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | - | chr8_2:10952587-10952606 | Msa1233870:intron | 25.0% |
| ! | AGTATGTTGTAAATTGTTTG+AGG | + | chr8_2:10952653-10952672 | None:intergenic | 25.0% |
| ! | AGTACACAAATATTGTGAAT+TGG | - | chr8_2:10952699-10952718 | Msa1233870:CDS | 25.0% |
| ! | GTACACAAATATTGTGAATT+GGG | - | chr8_2:10952700-10952719 | Msa1233870:CDS | 25.0% |
| !! | GATGCACAACATATTTTATA+AGG | - | chr8_2:10952843-10952862 | Msa1233870:intron | 25.0% |
| !!! | CCACACAATTTTTAATTTGA+TGG | + | chr8_2:10953105-10953124 | None:intergenic | 25.0% |
| ! | CCATCAAATTAAAAATTGTG+TGG | - | chr8_2:10953102-10953121 | Msa1233870:intron | 25.0% |
| ! | ATAATATAAGGGTAATTGGT+GGG | - | chr8_2:10953175-10953194 | Msa1233870:intron | 25.0% |
| !!! | TGGGTTTGTTAATTGATTAT+AGG | - | chr8_2:10953194-10953213 | Msa1233870:intron | 25.0% |
| !!! | GGGTTTGTTAATTGATTATA+GGG | - | chr8_2:10953195-10953214 | Msa1233870:intron | 25.0% |
| ! | TTTGTTAATTGATTATAGGG+CGG | - | chr8_2:10953198-10953217 | Msa1233870:intron | 25.0% |
| !!! | ATTTTTTATGCACTGAATGT+TGG | - | chr8_2:10953999-10954018 | Msa1233870:intron | 25.0% |
| !!! | TTTTTTATGCACTGAATGTT+GGG | - | chr8_2:10954000-10954019 | Msa1233870:intron | 25.0% |
| ! | TCTAAATATGGTCTAGAAAT+TGG | - | chr8_2:10954050-10954069 | Msa1233870:intron | 25.0% |
| !!! | GTTGAAAAGTTATTTTTACC+TGG | + | chr8_2:10954163-10954182 | None:intergenic | 25.0% |
| !! | GGTAAAAATAACTTTTCAAC+AGG | - | chr8_2:10954163-10954182 | Msa1233870:CDS | 25.0% |
| ! | AACAAATCAACATACTACAA+AGG | + | chr8_2:10954208-10954227 | None:intergenic | 25.0% |
| TGGTTTGAAGAAAAAACCAA+AGG | - | chr8_2:10951649-10951668 | Msa1233870:three_prime_UTR | 30.0% | |
| GTTGTTAATACAGCAAAGTT+AGG | - | chr8_2:10951839-10951858 | Msa1233870:CDS | 30.0% | |
| TGTTAATACAGCAAAGTTAG+GGG | - | chr8_2:10951841-10951860 | Msa1233870:CDS | 30.0% | |
| !! | AATGAGACTATGGTTGATAA+GGG | - | chr8_2:10951920-10951939 | Msa1233870:intron | 30.0% |
| TAAAAAAGAGGAGCAATTTG+TGG | - | chr8_2:10951955-10951974 | Msa1233870:intron | 30.0% | |
| CACATAATTCGTGTAATCAA+GGG | + | chr8_2:10952379-10952398 | None:intergenic | 30.0% | |
| TCACATAATTCGTGTAATCA+AGG | + | chr8_2:10952380-10952399 | None:intergenic | 30.0% | |
| TTACACGAATTATGTGACTA+TGG | - | chr8_2:10952383-10952402 | Msa1233870:intron | 30.0% | |
| TAAATTGCTCCTCTCATTAT+GGG | + | chr8_2:10952418-10952437 | None:intergenic | 30.0% | |
| ATAAATTGCTCCTCTCATTA+TGG | + | chr8_2:10952419-10952438 | None:intergenic | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | - | chr8_2:10952588-10952607 | Msa1233870:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | - | chr8_2:10952589-10952608 | Msa1233870:intron | 30.0% | |
| TATTGTGAATTGGGTAAAAG+AGG | - | chr8_2:10952709-10952728 | Msa1233870:CDS | 30.0% | |
| !! | AAACCACAAAAGTTTTAGTG+GGG | + | chr8_2:10952787-10952806 | None:intergenic | 30.0% |
| !! | GAAACCACAAAAGTTTTAGT+GGG | + | chr8_2:10952788-10952807 | None:intergenic | 30.0% |
| !! | AGAAACCACAAAAGTTTTAG+TGG | + | chr8_2:10952789-10952808 | None:intergenic | 30.0% |
| TCATGATATTGATCCATAAC+AGG | - | chr8_2:10952886-10952905 | Msa1233870:intron | 30.0% | |
| CATAATATAAGGGTAATTGG+TGG | - | chr8_2:10953174-10953193 | Msa1233870:intron | 30.0% | |
| TTGTCCAAGTAGAATCAAAT+CGG | - | chr8_2:10953283-10953302 | Msa1233870:intron | 30.0% | |
| AAAATGTTAGAGAAGAACCT+TGG | - | chr8_2:10953550-10953569 | Msa1233870:intron | 30.0% | |
| ATGAAAGTGAAACCAAGAAA+CGG | + | chr8_2:10953703-10953722 | None:intergenic | 30.0% | |
| TAAGTTAGATACAATCTGAC+AGG | + | chr8_2:10953879-10953898 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTAGGCTGCTTA+AGG | - | chr8_2:10953974-10953993 | Msa1233870:intron | 30.0% |
| ! | TTTTTATGCACTGAATGTTG+GGG | - | chr8_2:10954001-10954020 | Msa1233870:intron | 30.0% |
| !! | ATGTTGTTGCTTATGTTTTC+AGG | - | chr8_2:10954233-10954252 | Msa1233870:CDS | 30.0% |
| ATTTCATAAGGCTCGTCATT+AGG | + | chr8_2:10951629-10951648 | None:intergenic | 35.0% | |
| ! | AATGACGAGCCTTATGAAAT+TGG | - | chr8_2:10951629-10951648 | Msa1233870:three_prime_UTR | 35.0% |
| AGAAAAAACCAAAGGAAGAG+TGG | - | chr8_2:10951657-10951676 | Msa1233870:three_prime_UTR | 35.0% | |
| TGCTGAAAAGATTACTGAAG+CGG | - | chr8_2:10951814-10951833 | Msa1233870:intron | 35.0% | |
| ! | GAATGAGACTATGGTTGATA+AGG | - | chr8_2:10951919-10951938 | Msa1233870:intron | 35.0% |
| GAACATAGTCACATAATTCG+CGG | - | chr8_2:10952003-10952022 | Msa1233870:intron | 35.0% | |
| AGAAGAATTCGGTACGTATA+GGG | - | chr8_2:10952073-10952092 | Msa1233870:intron | 35.0% | |
| AAATGAATCACCATGAGTTG+AGG | + | chr8_2:10952218-10952237 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTTCAACCAATCAG+CGG | - | chr8_2:10952260-10952279 | Msa1233870:intron | 35.0% |
| TTACGAAATCCCATAATGAG+AGG | - | chr8_2:10952406-10952425 | Msa1233870:intron | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | - | chr8_2:10952590-10952609 | Msa1233870:intron | 35.0% | |
| GTTACATTAAGGGAAAAGGA+GGG | - | chr8_2:10952612-10952631 | Msa1233870:intron | 35.0% | |
| CTTCTATGGATCAAGTTTCT+TGG | + | chr8_2:10952764-10952783 | None:intergenic | 35.0% | |
| GTAAATCATCCAACTCAAAG+GGG | + | chr8_2:10952973-10952992 | None:intergenic | 35.0% | |
| CGTAAATCATCCAACTCAAA+GGG | + | chr8_2:10952974-10952993 | None:intergenic | 35.0% | |
| TCGTAAATCATCCAACTCAA+AGG | + | chr8_2:10952975-10952994 | None:intergenic | 35.0% | |
| TTCAGTTGAACATGATCATG+TGG | - | chr8_2:10953054-10953073 | Msa1233870:intron | 35.0% | |
| ! | GTATCCGATTTGATTCTACT+TGG | + | chr8_2:10953290-10953309 | None:intergenic | 35.0% |
| TGTGATTATCTCGTACAACT+TGG | + | chr8_2:10953375-10953394 | None:intergenic | 35.0% | |
| CTCACATAAGCAAGCATAAA+AGG | + | chr8_2:10953522-10953541 | None:intergenic | 35.0% | |
| AAACCAAGAAACGGGTAATA+TGG | + | chr8_2:10953694-10953713 | None:intergenic | 35.0% | |
| TGAAAGTGAAACCAAGAAAC+GGG | + | chr8_2:10953702-10953721 | None:intergenic | 35.0% | |
| !!! | AATTTTCAGGTGACACTATC+AGG | - | chr8_2:10953749-10953768 | Msa1233870:intron | 35.0% |
| !!! | ATTTTCAGGTGACACTATCA+GGG | - | chr8_2:10953750-10953769 | Msa1233870:intron | 35.0% |
| !! | ACTTTCACTTTTAGTCACAG+AGG | - | chr8_2:10954106-10954125 | Msa1233870:intron | 35.0% |
| !!! | TGGTTTTGTATGCAAAATCG+AGG | + | chr8_2:10954346-10954365 | None:intergenic | 35.0% |
| GGAAGATTGATAAGTGCAAC+AGG | - | chr8_2:10951777-10951796 | Msa1233870:intron | 40.0% | |
| ATGACTTCCAAAGCTAAGCA+AGG | + | chr8_2:10951899-10951918 | None:intergenic | 40.0% | |
| GGAAGTCATGAATGAGACTA+TGG | - | chr8_2:10951910-10951929 | Msa1233870:intron | 40.0% | |
| GAGAAGAATTCGGTACGTAT+AGG | - | chr8_2:10952072-10952091 | Msa1233870:intron | 40.0% | |
| GAAGAATTCGGTACGTATAG+GGG | - | chr8_2:10952074-10952093 | Msa1233870:intron | 40.0% | |
| ! | CCGCTGATTGGTTGAAAAAA+AGG | + | chr8_2:10952263-10952282 | None:intergenic | 40.0% |
| ATCAAGGGAGAATTGCGAAT+TGG | + | chr8_2:10952364-10952383 | None:intergenic | 40.0% | |
| GGTTACATTAAGGGAAAAGG+AGG | - | chr8_2:10952611-10952630 | Msa1233870:intron | 40.0% | |
| GAATTGGGTAAAAGAGGTTC+TGG | - | chr8_2:10952715-10952734 | Msa1233870:CDS | 40.0% | |
| CAAGTTTCTTGGATGCATAC+AGG | + | chr8_2:10952753-10952772 | None:intergenic | 40.0% | |
| !! | AAGTTTTAGTGGGGCTTCTA+TGG | + | chr8_2:10952778-10952797 | None:intergenic | 40.0% |
| ! | AAGCCCCACTAAAACTTTTG+TGG | - | chr8_2:10952781-10952800 | Msa1233870:intron | 40.0% |
| ! | TGTTTTCGCTTCGGAATACA+AGG | + | chr8_2:10952929-10952948 | None:intergenic | 40.0% |
| ! | TAACGATGGTGTTTTCGCTT+CGG | + | chr8_2:10952938-10952957 | None:intergenic | 40.0% |
| CTCACAGTAACCATCAAACT+CGG | + | chr8_2:10953433-10953452 | None:intergenic | 40.0% | |
| ! | GAGTTTGATGGTTACTGTGA+GGG | - | chr8_2:10953432-10953451 | Msa1233870:intron | 40.0% |
| CTGTGAGGGTGAGTTAATAA+AGG | - | chr8_2:10953446-10953465 | Msa1233870:intron | 40.0% | |
| CTCGTAACATTCGAATCACA+CGG | + | chr8_2:10953596-10953615 | None:intergenic | 40.0% | |
| GTACCATATTACCCGTTTCT+TGG | - | chr8_2:10953688-10953707 | Msa1233870:intron | 40.0% | |
| ! | TCGGTAATTTGTGTTCGTAC+AGG | + | chr8_2:10953785-10953804 | None:intergenic | 40.0% |
| TGTACGAACACAAATTACCG+AGG | - | chr8_2:10953784-10953803 | Msa1233870:intron | 40.0% | |
| AGTCACAGAGGCTTACATTA+AGG | - | chr8_2:10954118-10954137 | Msa1233870:intron | 40.0% | |
| ! | TTTTTACCTGGACACTCTTC+TGG | + | chr8_2:10954151-10954170 | None:intergenic | 40.0% |
| !! | CTTATGTTTTCAGGCCATGA+AGG | - | chr8_2:10954242-10954261 | Msa1233870:CDS | 40.0% |
| AGTGATCTTGCTCAGAGTTT+AGG | - | chr8_2:10954268-10954287 | Msa1233870:CDS | 40.0% | |
| TCACAACTCCACTCTTCCTT+TGG | + | chr8_2:10951668-10951687 | None:intergenic | 45.0% | |
| !! | TCTCACTCGTGGCTTTGATT+TGG | + | chr8_2:10951697-10951716 | None:intergenic | 45.0% |
| GGCTTGAATGCTCATCTGAA+TGG | - | chr8_2:10951719-10951738 | Msa1233870:intron | 45.0% | |
| ! | TCTGAATGGCAAGAAGCACA+AGG | - | chr8_2:10951733-10951752 | Msa1233870:intron | 45.0% |
| TCCTCAACCTTGCTTAGCTT+TGG | - | chr8_2:10951889-10951908 | Msa1233870:intron | 45.0% | |
| TCCAAAGCTAAGCAAGGTTG+AGG | + | chr8_2:10951893-10951912 | None:intergenic | 45.0% | |
| GGAGCAATTTGTGGAGATGA+TGG | - | chr8_2:10951964-10951983 | Msa1233870:intron | 45.0% | |
| ACATAATTCGCGGTTCGTTC+CGG | - | chr8_2:10952013-10952032 | Msa1233870:intron | 45.0% | |
| TACGCGACAGGAGAAGAATT+CGG | - | chr8_2:10952062-10952081 | Msa1233870:intron | 45.0% | |
| ! | CGTATAGGGGTATACAGCTT+CGG | - | chr8_2:10952087-10952106 | Msa1233870:intron | 45.0% |
| AAAGCATGGTTACCGCTGAT+TGG | + | chr8_2:10952275-10952294 | None:intergenic | 45.0% | |
| AATCAGCGGTAACCATGCTT+TGG | - | chr8_2:10952274-10952293 | Msa1233870:intron | 45.0% | |
| TAACCATGCTTTGGTACGCT+TGG | - | chr8_2:10952283-10952302 | Msa1233870:intron | 45.0% | |
| ! | AGTACCGAATTCGGGTACTT+CGG | + | chr8_2:10952335-10952354 | None:intergenic | 45.0% |
| !! | TGGTACGTGAGTACCGAATT+CGG | + | chr8_2:10952344-10952363 | None:intergenic | 45.0% |
| TGCAAAGGGGGGTTACATTA+AGG | - | chr8_2:10952601-10952620 | Msa1233870:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | - | chr8_2:10952602-10952621 | Msa1233870:intron | 45.0% | |
| GGGGGTTACATTAAGGGAAA+AGG | - | chr8_2:10952608-10952627 | Msa1233870:intron | 45.0% | |
| GGCGAGAACTACTTTAACGA+TGG | + | chr8_2:10952952-10952971 | None:intergenic | 45.0% | |
| GAACATGATCATGTGGCACA+TGG | - | chr8_2:10953061-10953080 | Msa1233870:intron | 45.0% | |
| TGATTATAGGGCGGAATGCT+CGG | - | chr8_2:10953207-10953226 | Msa1233870:intron | 45.0% | |
| TCTGTTCGAGACTGTGAAGA+AGG | - | chr8_2:10953251-10953270 | Msa1233870:intron | 45.0% | |
| ! | CGAGTTTGATGGTTACTGTG+AGG | - | chr8_2:10953431-10953450 | Msa1233870:intron | 45.0% |
| CACAACATTAGAGAGAGAGC+AGG | + | chr8_2:10953483-10953502 | None:intergenic | 45.0% | |
| GCTCTCTCTCTAATGTTGTG+CGG | - | chr8_2:10953483-10953502 | Msa1233870:intron | 45.0% | |
| AGAGAAGAACCTTGGCACAA+TGG | - | chr8_2:10953558-10953577 | Msa1233870:intron | 45.0% | |
| CAACTCTAACCATTGTGCCA+AGG | + | chr8_2:10953570-10953589 | None:intergenic | 45.0% | |
| AATGGATCCAACCCTTTCCT+TGG | - | chr8_2:10953644-10953663 | Msa1233870:intron | 45.0% | |
| ATGGATCCAACCCTTTCCTT+GGG | - | chr8_2:10953645-10953664 | Msa1233870:intron | 45.0% | |
| ACAAATTACCGAGGCTGCTA+TGG | - | chr8_2:10953793-10953812 | Msa1233870:intron | 45.0% | |
| TCCTAATTCCATAGCAGCCT+CGG | + | chr8_2:10953804-10953823 | None:intergenic | 45.0% | |
| GCAAGATCACTCATCCTTCA+TGG | + | chr8_2:10954259-10954278 | None:intergenic | 45.0% | |
| GGTTGAAGTGATGACAGAGA+AGG | - | chr8_2:10954314-10954333 | Msa1233870:CDS | 45.0% | |
| GAAGTGATGACAGAGAAGGA+TGG | - | chr8_2:10954318-10954337 | Msa1233870:CDS | 45.0% | |
| !!! | AAAAAAATACTTTTATATTT+CGG | - | chr8_2:10953014-10953033 | Msa1233870:intron | 5.0% |
| ATCAAAGCCACGAGTGAGAG+TGG | - | chr8_2:10951698-10951717 | Msa1233870:three_prime_UTR | 50.0% | |
| ATTCAAGCCACTCTCACTCG+TGG | + | chr8_2:10951708-10951727 | None:intergenic | 50.0% | |
| !!! | CCTTTTTTGCCCTGCTTCCT+TGG | + | chr8_2:10951759-10951778 | None:intergenic | 50.0% |
| CCAAGGAAGCAGGGCAAAAA+AGG | - | chr8_2:10951756-10951775 | Msa1233870:intron | 50.0% | |
| TATACAGCTTCGGTACGCTC+CGG | - | chr8_2:10952097-10952116 | Msa1233870:intron | 50.0% | |
| CTCACTCAGTCCTCAACTCA+TGG | - | chr8_2:10952205-10952224 | Msa1233870:CDS | 50.0% | |
| GAACCAAGCGTACCAAAGCA+TGG | + | chr8_2:10952289-10952308 | None:intergenic | 50.0% | |
| ATTCGGGTACTTCGGCGTAT+TGG | + | chr8_2:10952327-10952346 | None:intergenic | 50.0% | |
| ! | TACGCCGAAGTACCCGAATT+CGG | - | chr8_2:10952328-10952347 | Msa1233870:intron | 50.0% |
| !! | GGTACGTGAGTACCGAATTC+GGG | + | chr8_2:10952343-10952362 | None:intergenic | 50.0% |
| ! | GGGAAAAGGAGGGAGTACAT+CGG | - | chr8_2:10952622-10952641 | Msa1233870:intron | 50.0% |
| CGGAATACAAGGCAGTGAAG+AGG | + | chr8_2:10952918-10952937 | None:intergenic | 50.0% | |
| TAGTTCTCGCCCCTTTGAGT+TGG | - | chr8_2:10952961-10952980 | Msa1233870:intron | 50.0% | |
| TCAAACTCGGCTCTGCATAG+TGG | + | chr8_2:10953420-10953439 | None:intergenic | 50.0% | |
| CTATGCAGAGCCGAGTTTGA+TGG | - | chr8_2:10953420-10953439 | Msa1233870:intron | 50.0% | |
| ACCGAGGCTGCTATGGAATT+AGG | - | chr8_2:10953800-10953819 | Msa1233870:intron | 50.0% | |
| CAGAGTTTAGGAATGCCACC+AGG | - | chr8_2:10954280-10954299 | Msa1233870:CDS | 50.0% | |
| TTAGGAATGCCACCAGGTCT+CGG | - | chr8_2:10954286-10954305 | Msa1233870:CDS | 50.0% | |
| !! | GGCTCGTCATTAGGAGCATC+AGG | + | chr8_2:10951620-10951639 | None:intergenic | 55.0% |
| ! | TGGCAAGAAGCACAAGGCCA+AGG | - | chr8_2:10951739-10951758 | Msa1233870:intron | 55.0% |
| AAGCACAAGGCCAAGGAAGC+AGG | - | chr8_2:10951746-10951765 | Msa1233870:intron | 55.0% | |
| AGCACAAGGCCAAGGAAGCA+GGG | - | chr8_2:10951747-10951766 | Msa1233870:intron | 55.0% | |
| GTTCGTTCCGGTACGTGGTA+CGG | - | chr8_2:10952025-10952044 | Msa1233870:intron | 55.0% | |
| TTCGTTCCGGTACGTGGTAC+GGG | - | chr8_2:10952026-10952045 | Msa1233870:intron | 55.0% | |
| ! | CTTTGGTACGCTTGGTTCGC+TGG | - | chr8_2:10952291-10952310 | Msa1233870:intron | 55.0% |
| GAAGAGGCGAAGGCCTGTTA+TGG | + | chr8_2:10952902-10952921 | None:intergenic | 55.0% | |
| ACAAGGCAGTGAAGAGGCGA+AGG | + | chr8_2:10952912-10952931 | None:intergenic | 55.0% | |
| CATGTGGCACATGGACAGCA+TGG | - | chr8_2:10953070-10953089 | Msa1233870:intron | 55.0% | |
| TGCAGACCCAAGGAAAGGGT+TGG | + | chr8_2:10953654-10953673 | None:intergenic | 55.0% | |
| ACCCTTTCCTTGGGTCTGCA+AGG | - | chr8_2:10953654-10953673 | Msa1233870:intron | 55.0% | |
| GCCTTGCAGACCCAAGGAAA+GGG | + | chr8_2:10953658-10953677 | None:intergenic | 55.0% | |
| TGCCTTGCAGACCCAAGGAA+AGG | + | chr8_2:10953659-10953678 | None:intergenic | 55.0% | |
| !! | TGCACACCAGAAGAGTGTCC+AGG | - | chr8_2:10954142-10954161 | Msa1233870:intron | 55.0% |
| TTCAACCCTTCACCGAGACC+TGG | + | chr8_2:10954301-10954320 | None:intergenic | 55.0% | |
| TCCGGTACGTGGTACGGGTA+CGG | - | chr8_2:10952031-10952050 | Msa1233870:intron | 60.0% | |
| ! | CGAGACTGTGAAGAAGGCGC+AGG | - | chr8_2:10953257-10953276 | Msa1233870:intron | 60.0% |
| ! | GACTGTGAAGAAGGCGCAGG+CGG | - | chr8_2:10953260-10953279 | Msa1233870:intron | 60.0% |
| AGCTCTGCCTTGCAGACCCA+AGG | + | chr8_2:10953664-10953683 | None:intergenic | 60.0% | |
| ATGCCACCAGGTCTCGGTGA+AGG | - | chr8_2:10954292-10954311 | Msa1233870:CDS | 60.0% | |
| TGCCACCAGGTCTCGGTGAA+GGG | - | chr8_2:10954293-10954312 | Msa1233870:CDS | 60.0% | |
| AACCCTTCACCGAGACCTGG+TGG | + | chr8_2:10954298-10954317 | None:intergenic | 60.0% | |
| TCGCGGTTCGTTCCGGTACG+TGG | - | chr8_2:10952020-10952039 | Msa1233870:intron | 65.0% | |
| CCCGTACCCGTACCACGTAC+CGG | + | chr8_2:10952035-10952054 | None:intergenic | 65.0% | |
| CCGGTACGTGGTACGGGTAC+GGG | - | chr8_2:10952032-10952051 | Msa1233870:intron | 65.0% | |
| GTGGTACGGGTACGGGTTCG+CGG | - | chr8_2:10952039-10952058 | Msa1233870:intron | 65.0% | |
| GGCGGAATGCTCGGTCAGCT+CGG | - | chr8_2:10953216-10953235 | Msa1233870:intron | 65.0% | |
| ACGGGTTCGCGGTACGCGAC+AGG | - | chr8_2:10952050-10952069 | Msa1233870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 10951614 | 10954377 | 10951614 | ID=Msa1233870;Name=Msa1233870 |
| chr8_2 | mRNA | 10951614 | 10954377 | 10951614 | ID=Msa1233870-mRNA-1;Parent=Msa1233870;Name=Msa1233870-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.66|0.57|0.71|0.66|0.71|7|105|176 |
| chr8_2 | exon | 10951614 | 10951736 | 10951614 | ID=Msa1233870-mRNA-1:exon:4259;Parent=Msa1233870-mRNA-1 |
| chr8_2 | exon | 10951828 | 10951887 | 10951828 | ID=Msa1233870-mRNA-1:exon:4258;Parent=Msa1233870-mRNA-1 |
| chr8_2 | exon | 10952162 | 10952233 | 10952162 | ID=Msa1233870-mRNA-1:exon:4257;Parent=Msa1233870-mRNA-1 |
| chr8_2 | exon | 10952524 | 10952563 | 10952524 | ID=Msa1233870-mRNA-1:exon:4256;Parent=Msa1233870-mRNA-1 |
| chr8_2 | exon | 10952666 | 10952775 | 10952666 | ID=Msa1233870-mRNA-1:exon:4255;Parent=Msa1233870-mRNA-1 |
| chr8_2 | exon | 10952826 | 10952834 | 10952826 | ID=Msa1233870-mRNA-1:exon:4254;Parent=Msa1233870-mRNA-1 |
| chr8_2 | exon | 10954156 | 10954377 | 10954156 | ID=Msa1233870-mRNA-1:exon:4253;Parent=Msa1233870-mRNA-1 |
| chr8_2 | CDS | 10954156 | 10954377 | 10954156 | ID=Msa1233870-mRNA-1:cds;Parent=Msa1233870-mRNA-1 |
| chr8_2 | CDS | 10952826 | 10952834 | 10952826 | ID=Msa1233870-mRNA-1:cds;Parent=Msa1233870-mRNA-1 |
| chr8_2 | CDS | 10952666 | 10952775 | 10952666 | ID=Msa1233870-mRNA-1:cds;Parent=Msa1233870-mRNA-1 |
| chr8_2 | CDS | 10952524 | 10952563 | 10952524 | ID=Msa1233870-mRNA-1:cds;Parent=Msa1233870-mRNA-1 |
| chr8_2 | CDS | 10952162 | 10952233 | 10952162 | ID=Msa1233870-mRNA-1:cds;Parent=Msa1233870-mRNA-1 |
| chr8_2 | CDS | 10951828 | 10951887 | 10951828 | ID=Msa1233870-mRNA-1:cds;Parent=Msa1233870-mRNA-1 |
| chr8_2 | CDS | 10951719 | 10951736 | 10951719 | ID=Msa1233870-mRNA-1:cds;Parent=Msa1233870-mRNA-1 |
| chr8_2 | three_prime_UTR | 10951614 | 10951718 | 10951614 | ID=Msa1233870-mRNA-1:three_prime_utr;Parent=Msa1233870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
