Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1020720 | XP_003607297.1 | 97.059 | 68 | 2 | 0 | 1 | 68 | 1 | 68 | 1.49e-40 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1020720 | G7JPM7 | 97.059 | 68 | 2 | 0 | 1 | 68 | 1 | 68 | 7.14e-41 | 137 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002930 | Msa1020720 | 0.803709 | 3.062613e-49 | -8.615850e-47 |
Msa0012440 | Msa1020720 | 0.838888 | 2.199739e-57 | -8.615850e-47 |
Msa0017510 | Msa1020720 | 0.806814 | 6.852073e-50 | -8.615850e-47 |
Msa0022640 | Msa1020720 | 0.853779 | 1.906534e-61 | -8.615850e-47 |
Msa0032500 | Msa1020720 | 0.823551 | 1.303049e-53 | -8.615850e-47 |
Msa0033340 | Msa1020720 | 0.819930 | 8.967933e-53 | -8.615850e-47 |
Msa0036430 | Msa1020720 | 0.807652 | 4.552353e-50 | -8.615850e-47 |
Msa0057240 | Msa1020720 | 0.826272 | 2.971465e-54 | -8.615850e-47 |
Msa0073530 | Msa1020720 | 0.810520 | 1.106664e-50 | -8.615850e-47 |
Msa0094100 | Msa1020720 | 0.806248 | 9.021481e-50 | -8.615850e-47 |
Msa0118400 | Msa1020720 | 0.823390 | 1.421320e-53 | -8.615850e-47 |
Msa0607200 | Msa1020720 | 0.804196 | 2.426168e-49 | -8.615850e-47 |
Msa0610370 | Msa1020720 | 0.822803 | 1.948652e-53 | -8.615850e-47 |
Msa0611380 | Msa1020720 | 0.830666 | 2.583132e-55 | -8.615850e-47 |
Msa0618290 | Msa1020720 | 0.825388 | 4.816421e-54 | -8.615850e-47 |
Msa0631120 | Msa1020720 | 0.820418 | 6.931050e-53 | -8.615850e-47 |
Msa0641900 | Msa1020720 | 0.824061 | 9.898666e-54 | -8.615850e-47 |
Msa0649970 | Msa1020720 | 0.832170 | 1.101068e-55 | -8.615850e-47 |
Msa0650900 | Msa1020720 | 0.830010 | 3.734915e-55 | -8.615850e-47 |
Msa0657970 | Msa1020720 | 0.804780 | 1.833162e-49 | -8.615850e-47 |
Msa0661870 | Msa1020720 | 0.821996 | 2.999812e-53 | -8.615850e-47 |
Msa0663090 | Msa1020720 | 0.801620 | 8.263687e-49 | -8.615850e-47 |
Msa0666030 | Msa1020720 | 0.851146 | 1.073142e-60 | -8.615850e-47 |
Msa0669340 | Msa1020720 | 0.811821 | 5.780162e-51 | -8.615850e-47 |
Msa0708640 | Msa1020720 | 0.802347 | 5.858474e-49 | -8.615850e-47 |
Msa0716450 | Msa1020720 | 0.820476 | 6.722755e-53 | -8.615850e-47 |
Msa0717260 | Msa1020720 | 0.820938 | 5.265261e-53 | -8.615850e-47 |
Msa0717670 | Msa1020720 | 0.810808 | 9.588416e-51 | -8.615850e-47 |
Msa0734660 | Msa1020720 | 0.810857 | 9.356695e-51 | -8.615850e-47 |
Msa0758320 | Msa1020720 | 0.833021 | 6.774562e-56 | -8.615850e-47 |
Msa0773610 | Msa1020720 | 0.806219 | 9.148196e-50 | -8.615850e-47 |
Msa0776220 | Msa1020720 | 0.806950 | 6.412828e-50 | -8.615850e-47 |
Msa0782080 | Msa1020720 | 0.801397 | 9.179878e-49 | -8.615850e-47 |
Msa0789570 | Msa1020720 | 0.802156 | 6.413164e-49 | -8.615850e-47 |
Msa0815320 | Msa1020720 | 0.820764 | 5.773555e-53 | -8.615850e-47 |
Msa0818010 | Msa1020720 | 0.814273 | 1.675635e-51 | -8.615850e-47 |
Msa0837980 | Msa1020720 | 0.826818 | 2.201528e-54 | -8.615850e-47 |
Msa0130570 | Msa1020720 | 0.813308 | 2.734026e-51 | -8.615850e-47 |
Msa0149560 | Msa1020720 | 0.829928 | 3.912405e-55 | -8.615850e-47 |
Msa0153420 | Msa1020720 | 0.806224 | 9.128153e-50 | -8.615850e-47 |
Msa0157290 | Msa1020720 | 0.805586 | 1.242987e-49 | -8.615850e-47 |
Msa0161680 | Msa1020720 | 0.850429 | 1.707455e-60 | -8.615850e-47 |
Msa0173090 | Msa1020720 | 0.803231 | 3.847396e-49 | -8.615850e-47 |
Msa0203030 | Msa1020720 | 0.822022 | 2.958636e-53 | -8.615850e-47 |
Msa0213080 | Msa1020720 | 0.800580 | 1.348148e-48 | -8.615850e-47 |
Msa0219190 | Msa1020720 | 0.814583 | 1.430997e-51 | -8.615850e-47 |
Msa0220300 | Msa1020720 | 0.818097 | 2.340959e-52 | -8.615850e-47 |
Msa0235190 | Msa1020720 | 0.825750 | 3.952690e-54 | -8.615850e-47 |
Msa0371540 | Msa1020720 | 0.813243 | 2.824314e-51 | -8.615850e-47 |
Msa0408630 | Msa1020720 | 0.816727 | 4.764743e-52 | -8.615850e-47 |
Msa0419820 | Msa1020720 | 0.822630 | 2.137741e-53 | -8.615850e-47 |
Msa0419970 | Msa1020720 | 0.810889 | 9.209183e-51 | -8.615850e-47 |
Msa0436460 | Msa1020720 | 0.822012 | 2.974315e-53 | -8.615850e-47 |
Msa0452410 | Msa1020720 | 0.816505 | 5.342800e-52 | -8.615850e-47 |
Msa0458310 | Msa1020720 | 0.811296 | 7.514558e-51 | -8.615850e-47 |
Msa0466060 | Msa1020720 | 0.802927 | 4.447567e-49 | -8.615850e-47 |
Msa1002300 | Msa1020720 | 0.801496 | 8.760217e-49 | -8.615850e-47 |
Msa1006250 | Msa1020720 | 0.809155 | 2.175550e-50 | -8.615850e-47 |
Msa1010110 | Msa1020720 | 0.811100 | 8.289970e-51 | -8.615850e-47 |
Msa1019020 | Msa1020720 | 0.809199 | 2.129461e-50 | -8.615850e-47 |
Msa1020720 | Msa1027240 | 0.830845 | 2.334000e-55 | -8.615850e-47 |
Msa1020720 | Msa1027290 | 0.812342 | 4.450256e-51 | -8.615850e-47 |
Msa1020720 | Msa1033560 | 0.830401 | 2.999044e-55 | -8.615850e-47 |
Msa1020720 | Msa1034680 | 0.834950 | 2.228211e-56 | -8.615850e-47 |
Msa1020720 | Msa1050480 | 0.811527 | 6.697249e-51 | -8.615850e-47 |
Msa1020720 | Msa1060530 | 0.801790 | 7.624005e-49 | -8.615850e-47 |
Msa1020720 | Msa1064500 | 0.800067 | 1.715084e-48 | -8.615850e-47 |
Msa1020720 | Msa1073340 | 0.803425 | 3.508052e-49 | -8.615850e-47 |
Msa1020720 | Msa1097560 | 0.808179 | 3.516964e-50 | -8.615850e-47 |
Msa1020720 | Msa1104000 | 0.812700 | 3.716093e-51 | -8.615850e-47 |
Msa1020720 | Msa1113850 | 0.823335 | 1.463665e-53 | -8.615850e-47 |
Msa1020720 | Msa1139410 | 0.979971 | 3.742010e-149 | -8.615850e-47 |
Msa1020720 | Msa1147570 | 0.810323 | 1.220215e-50 | -8.615850e-47 |
Msa1020720 | Msa1160400 | 0.820119 | 8.117873e-53 | -8.615850e-47 |
Msa1020720 | Msa1218480 | 0.835682 | 1.455849e-56 | -8.615850e-47 |
Msa1020720 | Msa1233870 | 0.800448 | 1.434408e-48 | -8.615850e-47 |
Msa1020720 | Msa1275770 | 0.808529 | 2.961028e-50 | -8.615850e-47 |
Msa1020720 | Msa1287560 | 0.834843 | 2.370499e-56 | -8.615850e-47 |
Msa1020720 | Msa1288000 | 0.822415 | 2.397834e-53 | -8.615850e-47 |
Msa1020720 | Msa1289280 | 0.813200 | 2.886579e-51 | -8.615850e-47 |
Msa1020720 | Msa1308580 | 0.811842 | 5.718559e-51 | -8.615850e-47 |
Msa1020720 | Msa1308620 | 0.802330 | 5.904378e-49 | -8.615850e-47 |
Msa1020720 | Msa1324780 | 0.848429 | 6.163481e-60 | -8.615850e-47 |
Msa1020720 | Msa1359820 | 0.814836 | 1.257925e-51 | -8.615850e-47 |
Msa1020720 | Msa1374440 | 0.825555 | 4.396627e-54 | -8.615850e-47 |
Msa1020720 | Msa1379990 | 0.832783 | 7.760844e-56 | -8.615850e-47 |
Msa1020720 | Msa1419010 | 0.823805 | 1.136464e-53 | -8.615850e-47 |
Msa1020720 | Msa1420060 | 0.827676 | 1.371471e-54 | -8.615850e-47 |
Msa1020720 | Msa1422270 | 0.811303 | 7.489735e-51 | -8.615850e-47 |
Msa1020720 | Msa1423990 | 0.851027 | 1.159148e-60 | -8.615850e-47 |
Msa1020720 | Msa1429420 | 0.833416 | 5.401965e-56 | -8.615850e-47 |
Msa1020720 | Msa1440340 | 0.841699 | 4.056660e-58 | -8.615850e-47 |
Msa1020720 | Msa1444370 | 0.810438 | 1.152612e-50 | -8.615850e-47 |
Msa1020720 | Msa1453710 | 0.824033 | 1.004760e-53 | -8.615850e-47 |
Msa0251240 | Msa1020720 | 0.826459 | 2.681222e-54 | -8.615850e-47 |
Msa0257680 | Msa1020720 | 0.811021 | 8.623607e-51 | -8.615850e-47 |
Msa0258760 | Msa1020720 | 0.805225 | 1.479394e-49 | -8.615850e-47 |
Msa0265820 | Msa1020720 | 0.801942 | 7.097123e-49 | -8.615850e-47 |
Msa0273570 | Msa1020720 | 0.838067 | 3.582596e-57 | -8.615850e-47 |
Msa0273580 | Msa1020720 | 0.806423 | 8.286913e-50 | -8.615850e-47 |
Msa0280490 | Msa1020720 | 0.802749 | 4.839149e-49 | -8.615850e-47 |
Msa0313920 | Msa1020720 | 0.815071 | 1.115714e-51 | -8.615850e-47 |
Msa0322830 | Msa1020720 | 0.810264 | 1.256914e-50 | -8.615850e-47 |
Msa0322840 | Msa1020720 | 0.814002 | 1.923123e-51 | -8.615850e-47 |
Msa0331540 | Msa1020720 | 0.802335 | 5.890020e-49 | -8.615850e-47 |
Msa0335270 | Msa1020720 | 0.808078 | 3.696249e-50 | -8.615850e-47 |
Msa0484690 | Msa1020720 | 0.823956 | 1.047561e-53 | -8.615850e-47 |
Msa0495830 | Msa1020720 | 0.809442 | 1.888003e-50 | -8.615850e-47 |
Msa0496000 | Msa1020720 | 0.813766 | 2.167884e-51 | -8.615850e-47 |
Msa0503580 | Msa1020720 | 0.804091 | 2.551201e-49 | -8.615850e-47 |
Msa0506000 | Msa1020720 | 0.812971 | 3.240844e-51 | -8.615850e-47 |
Msa0517340 | Msa1020720 | 0.810395 | 1.177478e-50 | -8.615850e-47 |
Msa0531430 | Msa1020720 | 0.820301 | 7.374939e-53 | -8.615850e-47 |
Msa0534590 | Msa1020720 | 0.841181 | 5.552894e-58 | -8.615850e-47 |
Msa0555950 | Msa1020720 | 0.821413 | 4.092501e-53 | -8.615850e-47 |
Msa0580610 | Msa1020720 | 0.808539 | 2.946640e-50 | -8.615850e-47 |
Msa0584130 | Msa1020720 | 0.856900 | 2.352196e-62 | -8.615850e-47 |
Msa0590800 | Msa1020720 | 0.824124 | 9.568793e-54 | -8.615850e-47 |
Msa0599070 | Msa1020720 | 0.800610 | 1.329364e-48 | -8.615850e-47 |
Msa0853320 | Msa1020720 | 0.802857 | 4.597347e-49 | -8.615850e-47 |
Msa0858360 | Msa1020720 | 0.807622 | 4.620713e-50 | -8.615850e-47 |
Msa0870620 | Msa1020720 | 0.823926 | 1.064861e-53 | -8.615850e-47 |
Msa0880140 | Msa1020720 | 0.810191 | 1.302982e-50 | -8.615850e-47 |
Msa0880710 | Msa1020720 | 0.829807 | 4.185669e-55 | -8.615850e-47 |
Msa0884920 | Msa1020720 | 0.812593 | 3.921259e-51 | -8.615850e-47 |
Msa0898370 | Msa1020720 | 0.823407 | 1.408746e-53 | -8.615850e-47 |
Msa0912500 | Msa1020720 | 0.806824 | 6.819607e-50 | -8.615850e-47 |
Msa0936270 | Msa1020720 | 0.846330 | 2.324958e-59 | -8.615850e-47 |
Msa0946320 | Msa1020720 | 0.820491 | 6.670987e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1020720 | MtrunA17_Chr4g0038821 | 97.059 | 68 | 2 | 0 | 1 | 68 | 1 | 68 | 1.37e-44 | 137 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1020720 | AT3G22210.1 | 62.500 | 64 | 23 | 1 | 5 | 68 | 6 | 68 | 1.55e-20 | 77.0 |
Find 23 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGAACATGCAACTATTT+TGG | 0.167660 | 7_1:-44511414 | None:intergenic |
CAATTCGCTCTTCCAGTATT+GGG | 0.341545 | 7_1:+44510850 | Msa1020720:CDS |
GTCTTCTAGCTCGCCTCTCT+CGG | 0.346161 | 7_1:-44511083 | None:intergenic |
GACAGAAATCACTTCAAGAT+TGG | 0.349085 | 7_1:+44511013 | Msa1020720:intron |
GCCGCAACAATGCCCAATAC+TGG | 0.366936 | 7_1:-44510862 | None:intergenic |
AGCTCGCCTCTCTCGGGAGC+TGG | 0.374844 | 7_1:-44511076 | None:intergenic |
GCAATTCGCTCTTCCAGTAT+TGG | 0.399436 | 7_1:+44510849 | Msa1020720:CDS |
CTCTCTCGGGAGCTGGATGT+TGG | 0.452110 | 7_1:-44511069 | None:intergenic |
AGTAGCAAATTGTTTGTACT+AGG | 0.459932 | 7_1:+44511218 | Msa1020720:three_prime_UTR |
TCCAGTATTGGGCATTGTTG+CGG | 0.480204 | 7_1:+44510861 | Msa1020720:CDS |
ACAGAAATCACTTCAAGATT+GGG | 0.482353 | 7_1:+44511014 | Msa1020720:intron |
ATTGAAACTCACTGCATAGA+AGG | 0.485260 | 7_1:-44510896 | None:intergenic |
TCTTCTAGCTCGCCTCTCTC+GGG | 0.500761 | 7_1:-44511082 | None:intergenic |
CGAGGGAGAAAAGTCATTCA+AGG | 0.507786 | 7_1:-44511448 | None:intergenic |
ACTAACAAGAACTATTGAAA+AGG | 0.512776 | 7_1:-44511249 | None:intergenic |
GATGATTCTGAATCAGAGAA+TGG | 0.538128 | 7_1:+44511036 | Msa1020720:CDS |
TCCAATAGAAAATGGAACAC+GGG | 0.570237 | 7_1:-44511287 | None:intergenic |
CAACATCCAGCTCCCGAGAG+AGG | 0.612999 | 7_1:+44511070 | Msa1020720:CDS |
TTCCAATAGAAAATGGAACA+CGG | 0.614078 | 7_1:-44511288 | None:intergenic |
GAGTTTCAATGAGATTAGAG+AGG | 0.641117 | 7_1:+44510909 | Msa1020720:CDS |
GATTCTGAATCAGAGAATGG+AGG | 0.645594 | 7_1:+44511039 | Msa1020720:CDS |
ACAACAAGTTGCACATCCAG+AGG | 0.652049 | 7_1:+44511391 | Msa1020720:three_prime_UTR |
GTGAGACTAGTCACTGACCC+AGG | 0.670217 | 7_1:-44511370 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTGTCATAATTCAATTTTAT+AGG | - | chr7_1:44510998-44511017 | None:intergenic | 20.0% |
!!! | ATTTCTTAATTTTTGATGCT+TGG | + | chr7_1:44511178-44511197 | Msa1020720:three_prime_UTR | 20.0% |
!!! | TACATTTTTCCAATAGAAAA+TGG | - | chr7_1:44511298-44511317 | None:intergenic | 20.0% |
!!! | CATTTGTCGAAGTTATTTTT+TGG | - | chr7_1:44511124-44511143 | None:intergenic | 25.0% |
! | ACTAACAAGAACTATTGAAA+AGG | - | chr7_1:44511252-44511271 | None:intergenic | 25.0% |
!! | AAATGAACATGCAACTATTT+TGG | - | chr7_1:44511417-44511436 | None:intergenic | 25.0% |
ACAGAAATCACTTCAAGATT+GGG | + | chr7_1:44511014-44511033 | Msa1020720:intron | 30.0% | |
AGTAGCAAATTGTTTGTACT+AGG | + | chr7_1:44511218-44511237 | Msa1020720:three_prime_UTR | 30.0% | |
TTCCAATAGAAAATGGAACA+CGG | - | chr7_1:44511291-44511310 | None:intergenic | 30.0% | |
!!! | ACATTTTTTGTGTTTTCTCC+TGG | + | chr7_1:44511352-44511371 | Msa1020720:three_prime_UTR | 30.0% |
!!! | CATTTTTTGTGTTTTCTCCT+GGG | + | chr7_1:44511353-44511372 | Msa1020720:three_prime_UTR | 30.0% |
ATTGAAACTCACTGCATAGA+AGG | - | chr7_1:44510899-44510918 | None:intergenic | 35.0% | |
GAGTTTCAATGAGATTAGAG+AGG | + | chr7_1:44510909-44510928 | Msa1020720:CDS | 35.0% | |
GACAGAAATCACTTCAAGAT+TGG | + | chr7_1:44511013-44511032 | Msa1020720:intron | 35.0% | |
GATGATTCTGAATCAGAGAA+TGG | + | chr7_1:44511036-44511055 | Msa1020720:CDS | 35.0% | |
TCCAATAGAAAATGGAACAC+GGG | - | chr7_1:44511290-44511309 | None:intergenic | 35.0% | |
CAATTCGCTCTTCCAGTATT+GGG | + | chr7_1:44510850-44510869 | Msa1020720:CDS | 40.0% | |
GATTCTGAATCAGAGAATGG+AGG | + | chr7_1:44511039-44511058 | Msa1020720:CDS | 40.0% | |
GCAATTCGCTCTTCCAGTAT+TGG | + | chr7_1:44510849-44510868 | Msa1020720:CDS | 45.0% | |
! | TCCAGTATTGGGCATTGTTG+CGG | + | chr7_1:44510861-44510880 | Msa1020720:CDS | 45.0% |
! | GCCCGTGTTCCATTTTCTAT+TGG | + | chr7_1:44511286-44511305 | Msa1020720:three_prime_UTR | 45.0% |
ACAACAAGTTGCACATCCAG+AGG | + | chr7_1:44511391-44511410 | Msa1020720:three_prime_UTR | 45.0% | |
!!! | CATGCAACTATTTTGGCCTC+TGG | - | chr7_1:44511410-44511429 | None:intergenic | 45.0% |
GCCGCAACAATGCCCAATAC+TGG | - | chr7_1:44510865-44510884 | None:intergenic | 55.0% | |
!! | TCTTCTAGCTCGCCTCTCTC+GGG | - | chr7_1:44511085-44511104 | None:intergenic | 55.0% |
!! | GTCTTCTAGCTCGCCTCTCT+CGG | - | chr7_1:44511086-44511105 | None:intergenic | 55.0% |
! | GTGAGACTAGTCACTGACCC+AGG | - | chr7_1:44511373-44511392 | None:intergenic | 55.0% |
CTCTCTCGGGAGCTGGATGT+TGG | - | chr7_1:44511072-44511091 | None:intergenic | 60.0% | |
CAACATCCAGCTCCCGAGAG+AGG | + | chr7_1:44511070-44511089 | Msa1020720:CDS | 60.0% | |
AGCTCGCCTCTCTCGGGAGC+TGG | - | chr7_1:44511079-44511098 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 44510838 | 44511464 | 44510838 | ID=Msa1020720;Name=Msa1020720 |
chr7_1 | mRNA | 44510838 | 44511464 | 44510838 | ID=Msa1020720-mRNA-1;Parent=Msa1020720;Name=Msa1020720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.5|1|1|1|2|333|68 |
chr7_1 | exon | 44510838 | 44510930 | 44510838 | ID=Msa1020720-mRNA-1:exon:8653;Parent=Msa1020720-mRNA-1 |
chr7_1 | exon | 44511018 | 44511464 | 44511018 | ID=Msa1020720-mRNA-1:exon:8654;Parent=Msa1020720-mRNA-1 |
chr7_1 | CDS | 44510838 | 44510930 | 44510838 | ID=Msa1020720-mRNA-1:cds;Parent=Msa1020720-mRNA-1 |
chr7_1 | CDS | 44511018 | 44511131 | 44511018 | ID=Msa1020720-mRNA-1:cds;Parent=Msa1020720-mRNA-1 |
chr7_1 | three_prime_UTR | 44511132 | 44511464 | 44511132 | ID=Msa1020720-mRNA-1:three_prime_utr;Parent=Msa1020720-mRNA-1 |
Gene Sequence |
Protein sequence |