AlfalfaGEDB | Msa1234580

M. sativa cultivar zhongmu-4 / Msa1234580

KEGG: -
GO: -
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234580	XP_003627434.1	98.049	769	15	0	1	769	1	769	0.0	1567

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234580	sp\|Q6NQ79\|ARID4_ARATH	61.417	762	266	9	4	758	2	742	0.0	939

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234580	G7L956	98.049	769	15	0	1	769	1	769	0.0	1567

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TFs/TRs:

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Gene ID	Type	Classification
Msa1234580	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1175030	Msa1234580	0.854522	1.163674e-61	-8.615850e-47
Msa1234580	Msa1315430	0.855222	7.293344e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234580	MtrunA17_Chr8g0345011	97.919	769	15	1	1	769	1	768	0.0	1561
Msa1234580	MtrunA17_Chr2g0301851	61.708	773	266	10	2	759	1	758	0.0	957
Msa1234580	MtrunA17_Chr8g0352941	96.257	187	7	0	1	187	1	187	2.45e-126	375

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234580	AT3G43240.1	61.417	762	266	9	4	758	2	742	0.0	939

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Find 226 sgRNAs with CRISPR-Local

Find 581 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGCAAAGCCCATTG+AGG	0.606920	8_2:+11970136	None:intergenic
AAAATAATGCGTGACGGAAA+TGG	0.412532	8_2:+11972372	None:intergenic
AAACTTCGATAAGAAACATC+AGG	0.533627	8_2:+11969292	None:intergenic
AAAGAAGCTGCCTGAAGCGG+TGG	0.599822	8_2:+11970825	None:intergenic
AAATCAAGAACAAAGGTAGA+AGG	0.400577	8_2:+11966379	None:intergenic
AAATTCGTAACACTACAATG+AGG	0.721351	8_2:+11966643	None:intergenic
AAATTTACTAATTTAGATTA+TGG	0.212669	8_2:-11966347	Msa1234580:three_prime_UTR
AACAAAGGTAGAAGGGGTTG+AGG	0.555660	8_2:+11966387	None:intergenic
AACACAGTAAAGCTTGAAAG+AGG	0.495127	8_2:+11971897	None:intergenic
AACTCGGCAAGCCCACCTTG+GGG	0.678033	8_2:+11967745	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTAGTTAAACACGATG+AGG	+	chr8_2:11966450-11966469	None:intergenic	30.0%
GTATATAAACACGAAGAAAG+CGG	-	chr8_2:11966966-11966985	Msa1234580:intron	30.0%
TATATAAACACGAAGAAAGC+GGG	-	chr8_2:11966967-11966986	Msa1234580:intron	30.0%
TCCAGCAAAGATTAAATCAT+TGG	-	chr8_2:11967272-11967291	Msa1234580:intron	30.0%
TAAGAGTAGAAGTTGAGAAT+GGG	-	chr8_2:11967333-11967352	Msa1234580:intron	30.0%
CTAAAATGTGGTTATAGGAT+AGG	-	chr8_2:11967420-11967439	Msa1234580:intron	30.0%
AATCTAACATTCATAGACCA+TGG	+	chr8_2:11968207-11968226	None:intergenic	30.0%
GTTTACTTAGAAATCCCAAA+TGG	-	chr8_2:11968438-11968457	Msa1234580:intron	30.0%
CCAAAATACCTTAAGATGAA+GGG	+	chr8_2:11968481-11968500	None:intergenic	30.0%
ACCAAAATACCTTAAGATGA+AGG	+	chr8_2:11968482-11968501	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	11966231	11974865	11966231	ID=Msa1234580;Name=Msa1234580
chr8_2	mRNA	11966231	11974865	11966231	ID=Msa1234580-mRNA-1;Parent=Msa1234580;Name=Msa1234580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=251\|1\|1\|1\|0.93\|0.87\|16\|348\|769
chr8_2	exon	11966231	11966701	11966231	ID=Msa1234580-mRNA-1:exon:4697;Parent=Msa1234580-mRNA-1
chr8_2	exon	11966815	11966905	11966815	ID=Msa1234580-mRNA-1:exon:4696;Parent=Msa1234580-mRNA-1
chr8_2	exon	11967177	11967277	11967177	ID=Msa1234580-mRNA-1:exon:4695;Parent=Msa1234580-mRNA-1
chr8_2	exon	11967506	11967604	11967506	ID=Msa1234580-mRNA-1:exon:4694;Parent=Msa1234580-mRNA-1
chr8_2	exon	11967690	11967827	11967690	ID=Msa1234580-mRNA-1:exon:4693;Parent=Msa1234580-mRNA-1
chr8_2	exon	11968733	11969332	11968733	ID=Msa1234580-mRNA-1:exon:4692;Parent=Msa1234580-mRNA-1
chr8_2	exon	11970141	11970314	11970141	ID=Msa1234580-mRNA-1:exon:4691;Parent=Msa1234580-mRNA-1
chr8_2	exon	11970722	11970857	11970722	ID=Msa1234580-mRNA-1:exon:4690;Parent=Msa1234580-mRNA-1
chr8_2	exon	11971000	11971031	11971000	ID=Msa1234580-mRNA-1:exon:4689;Parent=Msa1234580-mRNA-1
chr8_2	exon	11971324	11971380	11971324	ID=Msa1234580-mRNA-1:exon:4688;Parent=Msa1234580-mRNA-1
chr8_2	exon	11971681	11971960	11971681	ID=Msa1234580-mRNA-1:exon:4687;Parent=Msa1234580-mRNA-1
chr8_2	exon	11972359	11972447	11972359	ID=Msa1234580-mRNA-1:exon:4686;Parent=Msa1234580-mRNA-1
chr8_2	exon	11972605	11972658	11972605	ID=Msa1234580-mRNA-1:exon:4685;Parent=Msa1234580-mRNA-1
chr8_2	exon	11973131	11973319	11973131	ID=Msa1234580-mRNA-1:exon:4684;Parent=Msa1234580-mRNA-1
chr8_2	exon	11974387	11974541	11974387	ID=Msa1234580-mRNA-1:exon:4683;Parent=Msa1234580-mRNA-1
chr8_2	exon	11974623	11974865	11974623	ID=Msa1234580-mRNA-1:exon:4682;Parent=Msa1234580-mRNA-1
chr8_2	five_prime_UTR	11974623	11974865	11974623	ID=Msa1234580-mRNA-1:five_prime_utr;Parent=Msa1234580-mRNA-1
chr8_2	five_prime_UTR	11974534	11974541	11974534	ID=Msa1234580-mRNA-1:five_prime_utr;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11974387	11974533	11974387	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11973131	11973319	11973131	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11972605	11972658	11972605	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11972359	11972447	11972359	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11971681	11971960	11971681	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11971324	11971380	11971324	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11971000	11971031	11971000	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11970722	11970857	11970722	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11970141	11970314	11970141	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11968733	11969332	11968733	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11967690	11967827	11967690	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11967506	11967604	11967506	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11967177	11967277	11967177	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11966815	11966905	11966815	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	CDS	11966579	11966701	11966579	ID=Msa1234580-mRNA-1:cds;Parent=Msa1234580-mRNA-1
chr8_2	three_prime_UTR	11966231	11966578	11966231	ID=Msa1234580-mRNA-1:three_prime_utr;Parent=Msa1234580-mRNA-1

Gene Sequence

>Msa1234580

ATGTTGCAGTTTCAGCCACAAGGAGCTTCTAAACAGACTTGTACTCTTCTTGCTGTTACCTCTGAAACACGTTCTGTTGAACAGAAGCAGTTACAGAATCAGCACAAGTATCCTTTCCCTGAGTTGGTTTCTTCGGGGCGTCTCGAGGTTCAAACTCTTTGCAATCCGGAAAAGGAACAGTTTCGTAAAGTTCTTGAATCGTGTAAGCCAAATTTTGTTTACTTTCAAGGGGAGCAGTTACTGGATGAGGAAGTTGGTTCACTGGTTTGGCAAGGTGTGGAATTATCCAACCCTGAAGAGATATCAGAGCTCTTCGATACCACATTACCGACGGCTGTTTACTTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCCCTTCATCTTAAGGGAATCCCATATGTTGTGTTTTGGAAAAATGCCTTTTCTCAATATGCTGCCTGCCATTTCCGTCACGCATTATTTTCAGTGGTGCAGAGTTCATCTACACACACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTCAAGCTTTACTGTGTTCAAAATAATCAAGTACTTCCTACTGATAGCAATGATGCTGATAGCGATATGGGGCCACACCTTCTTGGTGAGTGTCTCAAAATCAATGTTGACCCTCCAGAGATGGATGAAGAAGATGATGATGAAGAAAGTTCCTCAGGCAGTCTTCCTTCTATTCAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCTCCTTCCACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTTTTAACTATTGAAATGCGTAGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCGCTTCAGGCAGCTTCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCACATATCTCACTTCTAGTATCTGGCAGTCCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTTGTGCACAGCTCAACGGTGAAGCAAACACACGGATTATCTCTGAACCTCGCAGATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAGTTAGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCTTCTTTTGAGAAAGATGATGCGGAGCGCCTGCTTTTCTTTTATCAAAGCTCTGATAAAGATGGATGTGATAACGGCAATATAGTTTTCAGCAGGCCCCCCATTTGGTTGAAGCCTCCCCCTCCTACAAGAAAGAGGTGTGAATCAAGCCAAGGGGCTAGCCCTGACATCCACAATGATGAAGAGGAAAAGGATAGGACAATGGTGAATGGGATTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCAGCAATGAGGCCAATTCCTCATGTTCGACGCCATAGAATGACACCTTTTAGTGGACCTTCTGGTGTAAATGGCTTTGGTGGTGCCCATGTTGAGGCTTATGTGCCACTTGTCCCTGTGAAGCGTAGTAGTATTGGATCATCATCTGCAACACAGAGAAAATCTTTTTCAAGCTCATCTCAGCCTAAGCAGGTTATTTCATTGAATCCATTACCGTTGAAGAAACATGGCTGTAGCAGAGGCCCGGTACAGACTTGCTCTGAGGAGGAATTTATTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCCCAAGGTGGGCTTGCCGAGTTCCCTGATGCGATTCTGAATGGAAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAAATGGGAAATTACACATCAACAAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCTCATGATGATGTGGATGGAGAATGCTGCTTGCTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTCGGTTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTGGAATACATATGTCCTCATTGTAGTGTTACGAATTTCAAGAAAAAACAAAGTGTTGCAAATGGGTATTCTCAAGGGTCAATGTCGTCGCGACTCCTTTGA

Protein sequence

>Msa1234580

MLQFQPQGASKQTCTLLAVTSETRSVEQKQLQNQHKYPFPELVSSGRLEVQTLCNPEKEQFRKVLESCKPNFVYFQGEQLLDEEVGSLVWQGVELSNPEEISELFDTTLPTAVYLEIPNGESFAEALHLKGIPYVVFWKNAFSQYAACHFRHALFSVVQSSSTHTWDAFHLARASFKLYCVQNNQVLPTDSNDADSDMGPHLLGECLKINVDPPEMDEEDDDEESSSGSLPSIQIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEMRSCKLHGKYSAPPPPLQAASFSRGVVTMRCDISTCSSAHISLLVSGSPQACFNDQLLENHIKNEIIEKSQIVCAQLNGEANTRIISEPRRSASIACGATIFEVSMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSDKDGCDNGNIVFSRPPIWLKPPPPTRKRCESSQGASPDIHNDEEEKDRTMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSGVNGFGGAHVEAYVPLVPVKRSSIGSSSATQRKSFSSSSQPKQVISLNPLPLKKHGCSRGPVQTCSEEEFIKDVMEFLILRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRLL*