AlfalfaGEDB | Msa1315430

M. sativa cultivar zhongmu-4 / Msa1315430

KEGG: -
GO: -
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315430	XP_003627434.1	97.919	769	15	1	1	768	1	769	0.0	1561

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315430	sp\|Q6NQ79\|ARID4_ARATH	61.286	762	266	10	4	757	2	742	0.0	932

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315430	G7L956	97.919	769	15	1	1	768	1	769	0.0	1561

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TFs/TRs:

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Gene ID	Type	Classification
Msa1315430	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0289280	Msa1315430	0.821118	4.785242e-53	-8.615850e-47
Msa1175030	Msa1315430	0.883417	4.568172e-71	-8.615850e-47
Msa1234580	Msa1315430	0.855222	7.293344e-62	-8.615850e-47
Msa1315430	Msa1410130	0.819236	1.290949e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315430	MtrunA17_Chr8g0345011	97.789	769	15	2	1	768	1	768	0.0	1555
Msa1315430	MtrunA17_Chr2g0301851	61.708	773	265	11	2	758	1	758	0.0	952
Msa1315430	MtrunA17_Chr8g0352941	96.257	187	7	0	1	187	1	187	2.63e-126	375

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315430	AT3G43240.1	61.286	762	266	10	4	757	2	742	0.0	932

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Find 225 sgRNAs with CRISPR-Local

Find 1270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGCAAAGCCCATTG+AGG	0.606920	8_4:+14851911	None:intergenic
AAAATAATGCGTGACGGAAA+TGG	0.412532	8_4:+14855051	None:intergenic
AAACTTCGATAAGAAACATC+AGG	0.533627	8_4:+14851066	None:intergenic
AAAGAAGCTGCCTGAAGCGG+TGG	0.599822	8_4:+14852600	None:intergenic
AAATCAAGAACAAAGGTAGA+AGG	0.400577	8_4:+14848195	None:intergenic
AAATTCGTAACACTACAATG+AGG	0.721351	8_4:+14848459	None:intergenic
AAATTTACTAATTTAGATTA+TGG	0.212669	8_4:-14848163	Msa1315430:three_prime_UTR
AACAAAGGTAGAAGGGGTTG+AGG	0.555660	8_4:+14848203	None:intergenic
AACACAGTAAAGCTTGAAAG+AGG	0.495127	8_4:+14853669	None:intergenic
AACTCGGCAAGCCCACCTTG+GGG	0.678033	8_4:+14849519	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTAGTTAAACACGATG+AGG	+	chr8_4:14848266-14848285	None:intergenic	30.0%
GTATATAAACACGAAGAAAG+CGG	-	chr8_4:14848782-14848801	Msa1315430:intron	30.0%
TATATAAACACGAAGAAAGC+GGG	-	chr8_4:14848783-14848802	Msa1315430:intron	30.0%
TCCAGCAAAGATTAAATCAT+TGG	-	chr8_4:14849091-14849110	Msa1315430:intron	30.0%
TAAGAGTAGAAGTTGAGAAT+GGG	-	chr8_4:14849152-14849171	Msa1315430:intron	30.0%
CTAAAATGTGGTTATAGGAT+AGG	-	chr8_4:14849239-14849258	Msa1315430:intron	30.0%
AATCTAACATTCATAGACCA+TGG	+	chr8_4:14850023-14850042	None:intergenic	30.0%
GTTTACTTAGAAATCCCAAA+TGG	-	chr8_4:14850254-14850273	Msa1315430:intron	30.0%
CCAAAATACCTTAAGATGAA+GGG	+	chr8_4:14850297-14850316	None:intergenic	30.0%
ACCAAAATACCTTAAGATGA+AGG	+	chr8_4:14850298-14850317	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	14848047	14857544	14848047	ID=Msa1315430;Name=Msa1315430
chr8_4	mRNA	14848047	14857544	14848047	ID=Msa1315430-mRNA-1;Parent=Msa1315430;Name=Msa1315430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=251\|1\|1\|1\|0.86\|0.81\|16\|348\|768
chr8_4	exon	14848047	14848517	14848047	ID=Msa1315430-mRNA-1:exon:5660;Parent=Msa1315430-mRNA-1
chr8_4	exon	14848631	14848721	14848631	ID=Msa1315430-mRNA-1:exon:5659;Parent=Msa1315430-mRNA-1
chr8_4	exon	14848944	14849044	14848944	ID=Msa1315430-mRNA-1:exon:5658;Parent=Msa1315430-mRNA-1
chr8_4	exon	14849280	14849378	14849280	ID=Msa1315430-mRNA-1:exon:5657;Parent=Msa1315430-mRNA-1
chr8_4	exon	14849464	14849601	14849464	ID=Msa1315430-mRNA-1:exon:5656;Parent=Msa1315430-mRNA-1
chr8_4	exon	14850507	14851106	14850507	ID=Msa1315430-mRNA-1:exon:5655;Parent=Msa1315430-mRNA-1
chr8_4	exon	14851916	14852089	14851916	ID=Msa1315430-mRNA-1:exon:5654;Parent=Msa1315430-mRNA-1
chr8_4	exon	14852497	14852632	14852497	ID=Msa1315430-mRNA-1:exon:5653;Parent=Msa1315430-mRNA-1
chr8_4	exon	14852775	14852806	14852775	ID=Msa1315430-mRNA-1:exon:5652;Parent=Msa1315430-mRNA-1
chr8_4	exon	14853099	14853155	14853099	ID=Msa1315430-mRNA-1:exon:5651;Parent=Msa1315430-mRNA-1
chr8_4	exon	14853456	14853732	14853456	ID=Msa1315430-mRNA-1:exon:5650;Parent=Msa1315430-mRNA-1
chr8_4	exon	14855038	14855126	14855038	ID=Msa1315430-mRNA-1:exon:5649;Parent=Msa1315430-mRNA-1
chr8_4	exon	14855284	14855337	14855284	ID=Msa1315430-mRNA-1:exon:5648;Parent=Msa1315430-mRNA-1
chr8_4	exon	14855807	14855995	14855807	ID=Msa1315430-mRNA-1:exon:5647;Parent=Msa1315430-mRNA-1
chr8_4	exon	14857066	14857220	14857066	ID=Msa1315430-mRNA-1:exon:5646;Parent=Msa1315430-mRNA-1
chr8_4	exon	14857302	14857544	14857302	ID=Msa1315430-mRNA-1:exon:5645;Parent=Msa1315430-mRNA-1
chr8_4	five_prime_UTR	14857302	14857544	14857302	ID=Msa1315430-mRNA-1:five_prime_utr;Parent=Msa1315430-mRNA-1
chr8_4	five_prime_UTR	14857213	14857220	14857213	ID=Msa1315430-mRNA-1:five_prime_utr;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14857066	14857212	14857066	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14855807	14855995	14855807	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14855284	14855337	14855284	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14855038	14855126	14855038	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14853456	14853732	14853456	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14853099	14853155	14853099	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14852775	14852806	14852775	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14852497	14852632	14852497	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14851916	14852089	14851916	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14850507	14851106	14850507	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14849464	14849601	14849464	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14849280	14849378	14849280	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14848944	14849044	14848944	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14848631	14848721	14848631	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	CDS	14848395	14848517	14848395	ID=Msa1315430-mRNA-1:cds;Parent=Msa1315430-mRNA-1
chr8_4	three_prime_UTR	14848047	14848394	14848047	ID=Msa1315430-mRNA-1:three_prime_utr;Parent=Msa1315430-mRNA-1

Gene Sequence

>Msa1315430

ATGTTGCAGTTTCAGCCACAAGGAGCTTCTAAACAGACTTGTACTCTTCTTGCTGTTACCTCTGAAACACGTTCTGTTGAACAGAAGCAGTTACAGAATCAGCACAAGTATCCTTTCCCTGAGTTGGTTTCTTCGGGGCGTCTCGAGGTTCAAACTCTTTGCAATCCGGAAAAGGAGCAGTTTCGTAAAGTTCTTGAATCGTGTAAGCCAAATTTTGTTTACTTTCAAGGGGAGCAGTTACTGGATGAGGAAGTTGGTTCACTGGTTTGGCAAGGTGTGGAATTATCCAACCCTGAAGAGATATCAGAGCTCTTCGATACCACATTACCGACGGCTGTTTACTTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCCCTTCATCTTAAGGGAATCCCATATGTTGTGTTTTGGAAAAATGCCTTTTCTCAATATGCTGCCTGCCATTTCCGTCACGCATTATTTTCAGTGGTGCAGAGTTCATCTACACACACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTCAAGCTTTACTGTGTTCAAAATAATCAAGTACTTCCTACTGATAGCAATGATGCTGATAGCGATATGGGGCCACACCTTGGTGAGTGTCTCAAAATCAATGTTGACCCTCCAGAGATGGATGAAGAAGATGATGATGAAGAAAGTTCCTCAGGCAGTCTTCCTTCTATTCAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCTCCTTCCACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTTTTAACTATTGAAATGCGTAGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCGCTTCAGGCAGCTTCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCACATATCTCACTTCTAGTATCTGGCAGTCCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTTGTGCACAGCTCAACGGTGAAGCAAACACACGGATTATCTCTGAACCTCGCAGATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAGTTAGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCTTCTTTTGAGAAAGATGATGCGGAGCGCCTGCTTTTCTTTTATCAAAGCTCTGATAAAGATGGATGTGATAACGGCAATATAGTTTTCAGCAGGCCCCCCATTTGGTTGAAGCCTCCCCCTCCTACAAGAAAGAGGTGTGAATCAAGCCAAGGGGCTAGCCCTGACATCCACAATGATGAAGAGGAAAAGGATAGGACAATGGTGAATGGGATTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCAGCAATGAGGCCAATTCCTCATGTTCGACGCCATAGAATGACACCTTTTAGTGGACCTTCTGGTGTAAATGGCTTTGGTGGTGCCCATGTTGAGGCTTATGTGCCACTTGTCCCTGTGAAGCGTAGTAGTATTGGATCATCATCTGCAACACAGAGAAAATCTTTTTCAAGCTCATCTCAGCCTAAGCAGGTTATTTCATTGAATCCATTACCGTTGAAGAAACATGGCTGTAGCAGAGGCCCGGTACAGACTTGCTCTGAGGAGGAATTTATTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCCCAAGGTGGGCTTGCCGAGTTCCCTGATGCGATTCTGAATGGAAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAAATGGGAAATTACACGTCAACAAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCTCATGATGATGTGGATGGAGAATGCTGCTTGCTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTCGGTTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTGGAATACATATGTCCTCATTGTAGTGTTACGAATTTCAAGAAAAAACAAAGTGTTGCAAATGGGTATTCTCAAGGGTCAATGTCGTCGCGACTCCTTTGA

Protein sequence

>Msa1315430

MLQFQPQGASKQTCTLLAVTSETRSVEQKQLQNQHKYPFPELVSSGRLEVQTLCNPEKEQFRKVLESCKPNFVYFQGEQLLDEEVGSLVWQGVELSNPEEISELFDTTLPTAVYLEIPNGESFAEALHLKGIPYVVFWKNAFSQYAACHFRHALFSVVQSSSTHTWDAFHLARASFKLYCVQNNQVLPTDSNDADSDMGPHLGECLKINVDPPEMDEEDDDEESSSGSLPSIQIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEMRSCKLHGKYSAPPPPLQAASFSRGVVTMRCDISTCSSAHISLLVSGSPQACFNDQLLENHIKNEIIEKSQIVCAQLNGEANTRIISEPRRSASIACGATIFEVSMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSDKDGCDNGNIVFSRPPIWLKPPPPTRKRCESSQGASPDIHNDEEEKDRTMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSGVNGFGGAHVEAYVPLVPVKRSSIGSSSATQRKSFSSSSQPKQVISLNPLPLKKHGCSRGPVQTCSEEEFIKDVMEFLILRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRLL*