Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199960 | AFK41090.1 | 83.333 | 318 | 5 | 2 | 1 | 270 | 1 | 318 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199960 | sp|Q9LSP9|CTL2_ARATH | 65.157 | 287 | 52 | 2 | 21 | 259 | 33 | 319 | 3.89e-132 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199960 | I3SLE8 | 83.333 | 318 | 5 | 2 | 1 | 270 | 1 | 318 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0199960 | 0.811502 | 6.779710e-51 | -8.615850e-47 |
| Msa0040660 | Msa0199960 | 0.833134 | 6.349092e-56 | -8.615850e-47 |
| Msa0108160 | Msa0199960 | 0.814710 | 1.341123e-51 | -8.615850e-47 |
| Msa0199960 | Msa0227950 | 0.813628 | 2.324582e-51 | -8.615850e-47 |
| Msa0199960 | Msa0228250 | 0.836844 | 7.376121e-57 | -8.615850e-47 |
| Msa0199960 | Msa0242490 | 0.924308 | 8.381900e-90 | -8.615850e-47 |
| Msa0199960 | Msa0243600 | 0.916518 | 1.617354e-85 | -8.615850e-47 |
| Msa0199960 | Msa0255620 | 0.848632 | 5.415798e-60 | -8.615850e-47 |
| Msa0199960 | Msa0274440 | 0.832015 | 1.203218e-55 | -8.615850e-47 |
| Msa0199960 | Msa0280690 | 0.911256 | 7.466540e-83 | -8.615850e-47 |
| Msa0199960 | Msa0282220 | 0.916449 | 1.757971e-85 | -8.615850e-47 |
| Msa0199960 | Msa0294720 | 0.828234 | 1.006590e-54 | -8.615850e-47 |
| Msa0199960 | Msa0300210 | 0.809358 | 1.968827e-50 | -8.615850e-47 |
| Msa0199960 | Msa0314090 | 0.811843 | 5.715916e-51 | -8.615850e-47 |
| Msa0199960 | Msa0314170 | 0.829080 | 6.286226e-55 | -8.615850e-47 |
| Msa0199960 | Msa0319940 | 0.877216 | 7.508291e-69 | -8.615850e-47 |
| Msa0199960 | Msa0333070 | 0.871170 | 8.376764e-67 | -8.615850e-47 |
| Msa0199960 | Msa0337540 | 0.800474 | 1.416801e-48 | -8.615850e-47 |
| Msa0199960 | Msa0379440 | 0.829082 | 6.281809e-55 | -8.615850e-47 |
| Msa0199960 | Msa0389880 | 0.811712 | 6.102391e-51 | -8.615850e-47 |
| Msa0199960 | Msa0392380 | 0.809600 | 1.746579e-50 | -8.615850e-47 |
| Msa0199960 | Msa0438010 | 0.806420 | 8.297199e-50 | -8.615850e-47 |
| Msa0199960 | Msa0440320 | 0.805077 | 1.588640e-49 | -8.615850e-47 |
| Msa0199960 | Msa0475290 | 0.826187 | 3.112317e-54 | -8.615850e-47 |
| Msa0199960 | Msa0487500 | 0.800661 | 1.298098e-48 | -8.615850e-47 |
| Msa0199960 | Msa0589690 | 0.812972 | 3.239317e-51 | -8.615850e-47 |
| Msa0199960 | Msa0629600 | 0.868138 | 8.154751e-66 | -8.615850e-47 |
| Msa0199960 | Msa0642950 | 0.862093 | 6.470106e-64 | -8.615850e-47 |
| Msa0199960 | Msa0667370 | 0.872832 | 2.347666e-67 | -8.615850e-47 |
| Msa0199960 | Msa0688820 | 0.825306 | 5.037738e-54 | -8.615850e-47 |
| Msa0199960 | Msa0726330 | 0.802042 | 6.768288e-49 | -8.615850e-47 |
| Msa0199960 | Msa0783980 | 0.834924 | 2.262561e-56 | -8.615850e-47 |
| Msa0199960 | Msa0839190 | 0.803069 | 4.156031e-49 | -8.615850e-47 |
| Msa0199960 | Msa0945200 | 0.822125 | 2.799902e-53 | -8.615850e-47 |
| Msa0199960 | Msa0968350 | 0.831859 | 1.314748e-55 | -8.615850e-47 |
| Msa0199960 | Msa1024740 | 0.805028 | 1.626655e-49 | -8.615850e-47 |
| Msa0199960 | Msa1037550 | 0.886728 | 2.657117e-72 | -8.615850e-47 |
| Msa0199960 | Msa1063500 | 0.820063 | 8.361549e-53 | -8.615850e-47 |
| Msa0199960 | Msa1078930 | 0.823009 | 1.744548e-53 | -8.615850e-47 |
| Msa0199960 | Msa1106500 | 0.801542 | 8.574048e-49 | -8.615850e-47 |
| Msa0199960 | Msa1108790 | 0.811360 | 7.279397e-51 | -8.615850e-47 |
| Msa0199960 | Msa1123930 | 0.840614 | 7.821051e-58 | -8.615850e-47 |
| Msa0199960 | Msa1130430 | 0.851383 | 9.196654e-61 | -8.615850e-47 |
| Msa0199960 | Msa1169230 | 0.808477 | 3.038520e-50 | -8.615850e-47 |
| Msa0199960 | Msa1222590 | 0.891761 | 2.956575e-74 | -8.615850e-47 |
| Msa0199960 | Msa1227990 | 0.819948 | 8.883216e-53 | -8.615850e-47 |
| Msa0199960 | Msa1237090 | 0.826181 | 3.123824e-54 | -8.615850e-47 |
| Msa0199960 | Msa1250820 | 0.800041 | 1.736222e-48 | -8.615850e-47 |
| Msa0199960 | Msa1264570 | 0.842369 | 2.697258e-58 | -8.615850e-47 |
| Msa0199960 | Msa1327650 | 0.839515 | 1.513242e-57 | -8.615850e-47 |
| Msa0199960 | Msa1336610 | 0.800254 | 1.570708e-48 | -8.615850e-47 |
| Msa0199960 | Msa1340700 | 0.896737 | 2.767217e-76 | -8.615850e-47 |
| Msa0199960 | Msa1343400 | 0.803420 | 3.515918e-49 | -8.615850e-47 |
| Msa0199960 | Msa1426070 | 0.824581 | 7.471168e-54 | -8.615850e-47 |
| Msa0199960 | Msa1430750 | 0.890910 | 6.426265e-74 | -8.615850e-47 |
| Msa0199960 | Msa1436420 | 0.913654 | 4.787881e-84 | -8.615850e-47 |
| Msa0199960 | Msa1444190 | 0.813770 | 2.163202e-51 | -8.615850e-47 |
| Msa0199960 | Msa1446110 | 0.840283 | 9.545797e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199960 | MtrunA17_Chr2g0294721 | 83.333 | 318 | 5 | 2 | 1 | 270 | 1 | 318 | 0.0 | 523 |
| Msa0199960 | MtrunA17_Chr7g0221751 | 58.013 | 312 | 80 | 4 | 5 | 268 | 11 | 319 | 6.97e-122 | 350 |
| Msa0199960 | MtrunA17_Chr1g0206111 | 56.169 | 308 | 86 | 3 | 8 | 267 | 15 | 321 | 4.71e-119 | 343 |
| Msa0199960 | MtrunA17_Chr8g0370851 | 31.727 | 249 | 116 | 6 | 56 | 259 | 80 | 319 | 1.67e-35 | 129 |
| Msa0199960 | MtrunA17_Chr8g0370831 | 30.435 | 230 | 119 | 5 | 62 | 259 | 88 | 308 | 4.37e-33 | 122 |
| Msa0199960 | MtrunA17_Chr8g0370821 | 30.000 | 240 | 114 | 5 | 65 | 259 | 100 | 330 | 2.57e-31 | 118 |
| Msa0199960 | MtrunA17_Chr3g0145981 | 29.046 | 241 | 116 | 5 | 65 | 259 | 100 | 331 | 1.25e-28 | 111 |
| Msa0199960 | MtrunA17_Chr7g0270841 | 30.830 | 253 | 117 | 8 | 56 | 260 | 36 | 278 | 1.73e-24 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199960 | AT3G16920.1 | 65.157 | 287 | 52 | 2 | 21 | 259 | 33 | 319 | 3.95e-133 | 380 |
| Msa0199960 | AT3G16920.2 | 65.157 | 287 | 52 | 2 | 21 | 259 | 57 | 343 | 4.71e-133 | 380 |
| Msa0199960 | AT1G05850.1 | 57.843 | 306 | 77 | 5 | 9 | 265 | 14 | 316 | 4.86e-121 | 348 |
| Msa0199960 | AT1G05850.2 | 57.843 | 306 | 77 | 5 | 9 | 265 | 14 | 316 | 4.86e-121 | 348 |
| Msa0199960 | AT3G12500.1 | 31.349 | 252 | 114 | 6 | 56 | 259 | 86 | 326 | 3.44e-33 | 124 |
| Msa0199960 | AT1G02360.1 | 29.339 | 242 | 115 | 7 | 65 | 259 | 39 | 271 | 5.64e-23 | 95.5 |
| Msa0199960 | AT1G02360.2 | 29.339 | 242 | 115 | 7 | 65 | 259 | 85 | 317 | 1.02e-22 | 95.5 |
| Msa0199960 | AT1G02360.3 | 29.339 | 242 | 115 | 7 | 65 | 259 | 91 | 323 | 1.07e-22 | 95.5 |
| Msa0199960 | AT4G01700.1 | 27.686 | 242 | 119 | 7 | 65 | 259 | 47 | 279 | 7.10e-21 | 89.7 |
| Msa0199960 | AT2G43590.1 | 35.246 | 122 | 50 | 5 | 132 | 253 | 172 | 264 | 1.43e-11 | 63.5 |
Find 63 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCACATGCTTCTGGATTT+TGG | 0.066004 | 2_1:+19402222 | Msa0199960:CDS |
| CCTCTTGGATTTGGTACTTC+TGG | 0.205257 | 2_1:+19402284 | Msa0199960:CDS |
| CTTTATTACCTTGATTTATT+AGG | 0.217041 | 2_1:+19403819 | Msa0199960:CDS |
| TCGAGAACAAATTCTCAAAT+TGG | 0.234101 | 2_1:-19402184 | None:intergenic |
| GATCCAACGGCACATGCTTC+TGG | 0.270290 | 2_1:+19402215 | Msa0199960:CDS |
| CTTTATGAGCCTCTTGGATT+TGG | 0.284586 | 2_1:+19402275 | Msa0199960:CDS |
| TGAAGAGATCTTTACTTGTT+TGG | 0.308912 | 2_1:+19403936 | Msa0199960:exon |
| TCCAAAAGGGTACCTGGATT+TGG | 0.330784 | 2_1:+19403711 | Msa0199960:CDS |
| TATTATGATGCTATATATCT+TGG | 0.335834 | 2_1:+19404018 | Msa0199960:three_prime_UTR |
| CATGTTATGTGTGTTGCTTT+TGG | 0.368566 | 2_1:-19401953 | None:intergenic |
| AATAACAGGAATTACAACTA+TGG | 0.369875 | 2_1:+19403510 | Msa0199960:intron |
| ACCAAATCCAGGTACCCTTT+TGG | 0.377427 | 2_1:-19403712 | None:intergenic |
| GCTGCACTTTATGAGCCTCT+TGG | 0.400754 | 2_1:+19402269 | Msa0199960:CDS |
| AAAATGACACATTGTCCAAA+AGG | 0.404045 | 2_1:+19403697 | Msa0199960:CDS |
| TGGCCTTCCAAGCAGCACTA+TGG | 0.414638 | 2_1:+19403601 | Msa0199960:CDS |
| TCCAAGCAGCACTATGGAAA+TGG | 0.416055 | 2_1:+19403607 | Msa0199960:CDS |
| CTTGGATTTGGTACTTCTGG+TGG | 0.426651 | 2_1:+19402287 | Msa0199960:CDS |
| GCACAAGAGAGAATTTCATT+AGG | 0.427545 | 2_1:-19403864 | None:intergenic |
| TTTAAGATGATAAAATTGTA+AGG | 0.428020 | 2_1:+19403159 | Msa0199960:intron |
| AAAGAGGTTGCTGCTTTCCT+TGG | 0.429315 | 2_1:+19402326 | Msa0199960:CDS |
| GTTTGGTTGTGAATTAATCT+TGG | 0.429733 | 2_1:+19403953 | Msa0199960:three_prime_UTR |
| ATTGCAACAATATTAGTGAT+AGG | 0.439273 | 2_1:+19402029 | Msa0199960:CDS |
| GGTTGTGAATTAATCTTGGT+TGG | 0.452231 | 2_1:+19403957 | Msa0199960:three_prime_UTR |
| CTTCAAGTTGTTGAAGAAGA+AGG | 0.457398 | 2_1:-19403918 | None:intergenic |
| GTTTAATAGATCCACTTTCA+AGG | 0.461556 | 2_1:-19403547 | None:intergenic |
| TTGAGAATTTGTTCTCGAAA+CGG | 0.470513 | 2_1:+19402189 | Msa0199960:CDS |
| CCATTGGTGAAAACAGTAAA+GGG | 0.473968 | 2_1:+19402074 | Msa0199960:CDS |
| TACCTTGATTTATTAGGAGT+TGG | 0.479087 | 2_1:+19403825 | Msa0199960:CDS |
| TTTGTTCTATGTATTCTGGA+TGG | 0.487919 | 2_1:-19403569 | None:intergenic |
| GCTGCTTTCCTTGGTCATGT+TGG | 0.489882 | 2_1:+19402335 | Msa0199960:CDS |
| TTTCCATAGTGCTGCTTGGA+AGG | 0.495382 | 2_1:-19403604 | None:intergenic |
| TCCATTTCCATAGTGCTGCT+TGG | 0.499368 | 2_1:-19403608 | None:intergenic |
| TACCAACTCCTAATAAATCA+AGG | 0.502150 | 2_1:-19403827 | None:intergenic |
| GCCATTGGTGAAAACAGTAA+AGG | 0.508561 | 2_1:+19402073 | Msa0199960:CDS |
| TTTATTGTGGCACCAAATCC+AGG | 0.511197 | 2_1:-19403723 | None:intergenic |
| GTTTGTGATGTTAAGTGAAA+AGG | 0.512794 | 2_1:-19401890 | None:intergenic |
| TTGCTTCATTATCAGAACCT+TGG | 0.516239 | 2_1:-19403773 | None:intergenic |
| TATCACTAATATTGTTGCAA+TGG | 0.516493 | 2_1:-19402027 | None:intergenic |
| ACATTGTCCAAAAGGGTACC+TGG | 0.530667 | 2_1:+19403705 | Msa0199960:CDS |
| AAATGACACATTGTCCAAAA+GGG | 0.536961 | 2_1:+19403698 | Msa0199960:CDS |
| ATTAGGAGTTGGTAGAGAAG+AGG | 0.537611 | 2_1:+19403836 | Msa0199960:CDS |
| CATAGAACAAAATGCAACAT+TGG | 0.544956 | 2_1:+19403581 | Msa0199960:CDS |
| GGAGTTGGTAGAGAAGAGGC+AGG | 0.547951 | 2_1:+19403840 | Msa0199960:CDS |
| GGAAAGAAACTATGTGACAA+AGG | 0.557916 | 2_1:+19402095 | Msa0199960:CDS |
| ACCATATAAAACATTTATTG+TGG | 0.559699 | 2_1:-19403736 | None:intergenic |
| AGAAACTATGTGACAAAGGG+TGG | 0.568667 | 2_1:+19402099 | Msa0199960:CDS |
| AATTGGGGAAGCCTTGAAAG+TGG | 0.572731 | 2_1:+19403536 | Msa0199960:CDS |
| GAAAGAAACTATGTGACAAA+GGG | 0.573194 | 2_1:+19402096 | Msa0199960:CDS |
| GGTACTTCTGGTGGAAAGCA+TGG | 0.578987 | 2_1:+19402296 | Msa0199960:CDS |
| AATCCAGAAGCATGTGCCGT+TGG | 0.586749 | 2_1:-19402218 | None:intergenic |
| GGTGATCAAGTTTGTGACCA+AGG | 0.587507 | 2_1:+19403756 | Msa0199960:CDS |
| AAAGCATGGTGGTCAGAAAG+AGG | 0.601879 | 2_1:+19402310 | Msa0199960:CDS |
| GAAACTATGTGACAAAGGGT+GGG | 0.610521 | 2_1:+19402100 | Msa0199960:CDS |
| GAAGAAGAAGGTGAGCCAGT+TGG | 0.610682 | 2_1:-19403906 | None:intergenic |
| ACAAACATCAGTGAAGCCAT+TGG | 0.621601 | 2_1:+19402058 | Msa0199960:CDS |
| AAGGGTGGGAATGTAAAGGT+TGG | 0.625286 | 2_1:+19402114 | Msa0199960:CDS |
| CTCGAAACGGAATGATCCAA+CGG | 0.641016 | 2_1:+19402202 | Msa0199960:CDS |
| GTGATGTTAAGTGAAAAGGA+TGG | 0.654329 | 2_1:-19401886 | None:intergenic |
| GAGTTGGTAGAGAAGAGGCA+GGG | 0.664610 | 2_1:+19403841 | Msa0199960:CDS |
| GACAAAGGGTGGGAATGTAA+AGG | 0.668253 | 2_1:+19402110 | Msa0199960:CDS |
| TCTTGCTTCCAACATGACCA+AGG | 0.673449 | 2_1:-19402343 | None:intergenic |
| CCAGAAGTACCAAATCCAAG+AGG | 0.703394 | 2_1:-19402284 | None:intergenic |
| ACTTCTGGTGGAAAGCATGG+TGG | 0.730500 | 2_1:+19402299 | Msa0199960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTTTTTTAGTTCATTA+TGG | + | chr2_1:19402528-19402547 | Msa0199960:intron | 15.0% |
| !! | GGAAAAATAATGAATTATAT+AGG | + | chr2_1:19403093-19403112 | Msa0199960:intron | 15.0% |
| !!! | TTTAAGATGATAAAATTGTA+AGG | + | chr2_1:19403159-19403178 | Msa0199960:intron | 15.0% |
| !!! | GTATGAATTGAATATATTTT+TGG | + | chr2_1:19404059-19404078 | Msa0199960:three_prime_UTR | 15.0% |
| !!! | TACAAATATATTGTTTTTTG+TGG | - | chr2_1:19404242-19404261 | None:intergenic | 15.0% |
| !!! | TTATGTTTTTTAGTTCATTA+TGG | + | chr2_1:19402528-19402547 | Msa0199960:intron | 15.0% |
| !! | GGAAAAATAATGAATTATAT+AGG | + | chr2_1:19403093-19403112 | Msa0199960:intron | 15.0% |
| !!! | TTTAAGATGATAAAATTGTA+AGG | + | chr2_1:19403159-19403178 | Msa0199960:intron | 15.0% |
| !!! | GTATGAATTGAATATATTTT+TGG | + | chr2_1:19404059-19404078 | Msa0199960:three_prime_UTR | 15.0% |
| !!! | TACAAATATATTGTTTTTTG+TGG | - | chr2_1:19404242-19404261 | None:intergenic | 15.0% |
| !!! | AAATGAGATTTTAACTTGTT+AGG | - | chr2_1:19401865-19401884 | None:intergenic | 20.0% |
| !! | AAGAAAAAATGAATTCCAAA+TGG | + | chr2_1:19401988-19402007 | Msa0199960:exon | 20.0% |
| !! | TAATAGAAAAAATGTCCATT+TGG | - | chr2_1:19402006-19402025 | None:intergenic | 20.0% |
| !! | TATAAAATGATCAATTCATG+TGG | + | chr2_1:19402423-19402442 | Msa0199960:intron | 20.0% |
| !! | ATAAAATGATCAATTCATGT+GGG | + | chr2_1:19402424-19402443 | Msa0199960:intron | 20.0% |
| !!! | ACACACACAATTTTTTTTTT+CGG | + | chr2_1:19402803-19402822 | Msa0199960:intron | 20.0% |
| !! | AAGATGTTATATTATTAGAG+TGG | + | chr2_1:19403124-19403143 | Msa0199960:intron | 20.0% |
| !! | AAATGTGAATACCAATAAAT+AGG | - | chr2_1:19403354-19403373 | None:intergenic | 20.0% |
| !! | AATTACAACTATGGAAAAAT+TGG | + | chr2_1:19403519-19403538 | Msa0199960:CDS | 20.0% |
| !! | ATTACAACTATGGAAAAATT+GGG | + | chr2_1:19403520-19403539 | Msa0199960:CDS | 20.0% |
| !! | ACCATATAAAACATTTATTG+TGG | - | chr2_1:19403739-19403758 | None:intergenic | 20.0% |
| !! | CTTTATTACCTTGATTTATT+AGG | + | chr2_1:19403819-19403838 | Msa0199960:CDS | 20.0% |
| !! | TATTATGATGCTATATATCT+TGG | + | chr2_1:19404018-19404037 | Msa0199960:three_prime_UTR | 20.0% |
| !!! | AAATCAAAACGAATTTTCTA+CGG | + | chr2_1:19404216-19404235 | Msa0199960:three_prime_UTR | 20.0% |
| !!! | AAATGAGATTTTAACTTGTT+AGG | - | chr2_1:19401865-19401884 | None:intergenic | 20.0% |
| !! | AAGAAAAAATGAATTCCAAA+TGG | + | chr2_1:19401988-19402007 | Msa0199960:exon | 20.0% |
| !! | TAATAGAAAAAATGTCCATT+TGG | - | chr2_1:19402006-19402025 | None:intergenic | 20.0% |
| !! | TATAAAATGATCAATTCATG+TGG | + | chr2_1:19402423-19402442 | Msa0199960:intron | 20.0% |
| !! | ATAAAATGATCAATTCATGT+GGG | + | chr2_1:19402424-19402443 | Msa0199960:intron | 20.0% |
| !!! | ACACACACAATTTTTTTTTT+CGG | + | chr2_1:19402803-19402822 | Msa0199960:intron | 20.0% |
| !! | AAGATGTTATATTATTAGAG+TGG | + | chr2_1:19403124-19403143 | Msa0199960:intron | 20.0% |
| !! | AAATGTGAATACCAATAAAT+AGG | - | chr2_1:19403354-19403373 | None:intergenic | 20.0% |
| !! | AATTACAACTATGGAAAAAT+TGG | + | chr2_1:19403519-19403538 | Msa0199960:CDS | 20.0% |
| !! | ATTACAACTATGGAAAAATT+GGG | + | chr2_1:19403520-19403539 | Msa0199960:CDS | 20.0% |
| !! | ACCATATAAAACATTTATTG+TGG | - | chr2_1:19403739-19403758 | None:intergenic | 20.0% |
| !! | CTTTATTACCTTGATTTATT+AGG | + | chr2_1:19403819-19403838 | Msa0199960:CDS | 20.0% |
| !! | TATTATGATGCTATATATCT+TGG | + | chr2_1:19404018-19404037 | Msa0199960:three_prime_UTR | 20.0% |
| !!! | AAATCAAAACGAATTTTCTA+CGG | + | chr2_1:19404216-19404235 | Msa0199960:three_prime_UTR | 20.0% |
| ! | TATCACTAATATTGTTGCAA+TGG | - | chr2_1:19402030-19402049 | None:intergenic | 25.0% |
| ! | ATTGCAACAATATTAGTGAT+AGG | + | chr2_1:19402029-19402048 | Msa0199960:CDS | 25.0% |
| ! | TAAAATGATCAATTCATGTG+GGG | + | chr2_1:19402425-19402444 | Msa0199960:intron | 25.0% |
| !! | CATTTGATGATTCATAGATT+TGG | + | chr2_1:19402633-19402652 | Msa0199960:intron | 25.0% |
| !! | ACTCATGGTAAAAAAGTATA+GGG | - | chr2_1:19402917-19402936 | None:intergenic | 25.0% |
| !! | AACTCATGGTAAAAAAGTAT+AGG | - | chr2_1:19402918-19402937 | None:intergenic | 25.0% |
| !!! | TTTTTTACCATGAGTTGTAT+AGG | + | chr2_1:19402922-19402941 | Msa0199960:intron | 25.0% |
| !! | ACCAAACAACTTCAAATTTT+TGG | + | chr2_1:19403031-19403050 | Msa0199960:intron | 25.0% |
| !! | TCCAAAAATTTGAAGTTGTT+TGG | - | chr2_1:19403035-19403054 | None:intergenic | 25.0% |
| ! | TGTTATATTATTAGAGTGGT+TGG | + | chr2_1:19403128-19403147 | Msa0199960:intron | 25.0% |
| ! | TGAATACCAATAAATAGGTA+TGG | - | chr2_1:19403349-19403368 | None:intergenic | 25.0% |
| ! | GTTGTAATTCCTGTTATTAA+AGG | - | chr2_1:19403508-19403527 | None:intergenic | 25.0% |
| ! | AATAACAGGAATTACAACTA+TGG | + | chr2_1:19403510-19403529 | Msa0199960:intron | 25.0% |
| ! | TTACAACTATGGAAAAATTG+GGG | + | chr2_1:19403521-19403540 | Msa0199960:CDS | 25.0% |
| !!! | ATGATGTTTTTGTTGGAAAT+TGG | + | chr2_1:19403664-19403683 | Msa0199960:CDS | 25.0% |
| !! | GCCACAATAAATGTTTTATA+TGG | + | chr2_1:19403735-19403754 | Msa0199960:CDS | 25.0% |
| ! | TATCACTAATATTGTTGCAA+TGG | - | chr2_1:19402030-19402049 | None:intergenic | 25.0% |
| ! | ATTGCAACAATATTAGTGAT+AGG | + | chr2_1:19402029-19402048 | Msa0199960:CDS | 25.0% |
| ! | TAAAATGATCAATTCATGTG+GGG | + | chr2_1:19402425-19402444 | Msa0199960:intron | 25.0% |
| !! | CATTTGATGATTCATAGATT+TGG | + | chr2_1:19402633-19402652 | Msa0199960:intron | 25.0% |
| !! | ACTCATGGTAAAAAAGTATA+GGG | - | chr2_1:19402917-19402936 | None:intergenic | 25.0% |
| !! | AACTCATGGTAAAAAAGTAT+AGG | - | chr2_1:19402918-19402937 | None:intergenic | 25.0% |
| !!! | TTTTTTACCATGAGTTGTAT+AGG | + | chr2_1:19402922-19402941 | Msa0199960:intron | 25.0% |
| !! | ACCAAACAACTTCAAATTTT+TGG | + | chr2_1:19403031-19403050 | Msa0199960:intron | 25.0% |
| !! | TCCAAAAATTTGAAGTTGTT+TGG | - | chr2_1:19403035-19403054 | None:intergenic | 25.0% |
| ! | TGTTATATTATTAGAGTGGT+TGG | + | chr2_1:19403128-19403147 | Msa0199960:intron | 25.0% |
| ! | TGAATACCAATAAATAGGTA+TGG | - | chr2_1:19403349-19403368 | None:intergenic | 25.0% |
| ! | GTTGTAATTCCTGTTATTAA+AGG | - | chr2_1:19403508-19403527 | None:intergenic | 25.0% |
| ! | AATAACAGGAATTACAACTA+TGG | + | chr2_1:19403510-19403529 | Msa0199960:intron | 25.0% |
| ! | TTACAACTATGGAAAAATTG+GGG | + | chr2_1:19403521-19403540 | Msa0199960:CDS | 25.0% |
| !!! | ATGATGTTTTTGTTGGAAAT+TGG | + | chr2_1:19403664-19403683 | Msa0199960:CDS | 25.0% |
| !! | GCCACAATAAATGTTTTATA+TGG | + | chr2_1:19403735-19403754 | Msa0199960:CDS | 25.0% |
| ! | TTGATTTTCAGAGTTGGATT+AGG | - | chr2_1:19401837-19401856 | None:intergenic | 30.0% |
| !!! | TGAGATTTTAACTTGTTAGG+AGG | - | chr2_1:19401862-19401881 | None:intergenic | 30.0% |
| GTTTGTGATGTTAAGTGAAA+AGG | - | chr2_1:19401893-19401912 | None:intergenic | 30.0% | |
| GAAAGAAACTATGTGACAAA+GGG | + | chr2_1:19402096-19402115 | Msa0199960:CDS | 30.0% | |
| TCGAGAACAAATTCTCAAAT+TGG | - | chr2_1:19402187-19402206 | None:intergenic | 30.0% | |
| ! | TTGAGAATTTGTTCTCGAAA+CGG | + | chr2_1:19402189-19402208 | Msa0199960:CDS | 30.0% |
| ATTGAATTGTGACTTACAAG+AGG | - | chr2_1:19402369-19402388 | None:intergenic | 30.0% | |
| AAAATGATCAATTCATGTGG+GGG | + | chr2_1:19402426-19402445 | Msa0199960:intron | 30.0% | |
| AGAACGTGATCAATTCATTT+AGG | + | chr2_1:19402481-19402500 | Msa0199960:intron | 30.0% | |
| GAACGTGATCAATTCATTTA+GGG | + | chr2_1:19402482-19402501 | Msa0199960:intron | 30.0% | |
| AACGTGATCAATTCATTTAG+GGG | + | chr2_1:19402483-19402502 | Msa0199960:intron | 30.0% | |
| GTCAAATATCATGCAATTGA+GGG | - | chr2_1:19402554-19402573 | None:intergenic | 30.0% | |
| TGTCAAATATCATGCAATTG+AGG | - | chr2_1:19402555-19402574 | None:intergenic | 30.0% | |
| ! | GTAAAAAAGTATAGGGACAT+TGG | - | chr2_1:19402910-19402929 | None:intergenic | 30.0% |
| !! | ACCAAACTTGGTTTTTGTAT+AGG | + | chr2_1:19403072-19403091 | Msa0199960:intron | 30.0% |
| TCCTATACAAAAACCAAGTT+TGG | - | chr2_1:19403076-19403095 | None:intergenic | 30.0% | |
| GGTTCTTGAAATATTGTTTC+AGG | + | chr2_1:19403180-19403199 | Msa0199960:intron | 30.0% | |
| TCTTGAAATATTGTTTCAGG+TGG | + | chr2_1:19403183-19403202 | Msa0199960:intron | 30.0% | |
| ! | AATATTGTTTCAGGTGGTTA+TGG | + | chr2_1:19403189-19403208 | Msa0199960:intron | 30.0% |
| ! | ATATTGTTTCAGGTGGTTAT+GGG | + | chr2_1:19403190-19403209 | Msa0199960:intron | 30.0% |
| TCATCACAATAGAATTGATC+AGG | - | chr2_1:19403270-19403289 | None:intergenic | 30.0% | |
| TTCTTGATGCCTTTAATAAC+AGG | + | chr2_1:19403496-19403515 | Msa0199960:intron | 30.0% | |
| GTTTAATAGATCCACTTTCA+AGG | - | chr2_1:19403550-19403569 | None:intergenic | 30.0% | |
| TTTGTTCTATGTATTCTGGA+TGG | - | chr2_1:19403572-19403591 | None:intergenic | 30.0% | |
| ! | GCATTTTGTTCTATGTATTC+TGG | - | chr2_1:19403576-19403595 | None:intergenic | 30.0% |
| CATAGAACAAAATGCAACAT+TGG | + | chr2_1:19403581-19403600 | Msa0199960:CDS | 30.0% | |
| TTTCCAACAAAAACATCATG+TGG | - | chr2_1:19403663-19403682 | None:intergenic | 30.0% | |
| !!! | GACAATGTGTCATTTTTTGT+TGG | - | chr2_1:19403693-19403712 | None:intergenic | 30.0% |
| AAAATGACACATTGTCCAAA+AGG | + | chr2_1:19403697-19403716 | Msa0199960:CDS | 30.0% | |
| AAATGACACATTGTCCAAAA+GGG | + | chr2_1:19403698-19403717 | Msa0199960:CDS | 30.0% | |
| TACCTTGATTTATTAGGAGT+TGG | + | chr2_1:19403825-19403844 | Msa0199960:CDS | 30.0% | |
| TACCAACTCCTAATAAATCA+AGG | - | chr2_1:19403830-19403849 | None:intergenic | 30.0% | |
| TGAAGAGATCTTTACTTGTT+TGG | + | chr2_1:19403936-19403955 | Msa0199960:exon | 30.0% | |
| GTTTGGTTGTGAATTAATCT+TGG | + | chr2_1:19403953-19403972 | Msa0199960:three_prime_UTR | 30.0% | |
| ! | TTGATTTTCAGAGTTGGATT+AGG | - | chr2_1:19401837-19401856 | None:intergenic | 30.0% |
| !!! | TGAGATTTTAACTTGTTAGG+AGG | - | chr2_1:19401862-19401881 | None:intergenic | 30.0% |
| GTTTGTGATGTTAAGTGAAA+AGG | - | chr2_1:19401893-19401912 | None:intergenic | 30.0% | |
| GAAAGAAACTATGTGACAAA+GGG | + | chr2_1:19402096-19402115 | Msa0199960:CDS | 30.0% | |
| TCGAGAACAAATTCTCAAAT+TGG | - | chr2_1:19402187-19402206 | None:intergenic | 30.0% | |
| ! | TTGAGAATTTGTTCTCGAAA+CGG | + | chr2_1:19402189-19402208 | Msa0199960:CDS | 30.0% |
| ATTGAATTGTGACTTACAAG+AGG | - | chr2_1:19402369-19402388 | None:intergenic | 30.0% | |
| AAAATGATCAATTCATGTGG+GGG | + | chr2_1:19402426-19402445 | Msa0199960:intron | 30.0% | |
| AGAACGTGATCAATTCATTT+AGG | + | chr2_1:19402481-19402500 | Msa0199960:intron | 30.0% | |
| GAACGTGATCAATTCATTTA+GGG | + | chr2_1:19402482-19402501 | Msa0199960:intron | 30.0% | |
| AACGTGATCAATTCATTTAG+GGG | + | chr2_1:19402483-19402502 | Msa0199960:intron | 30.0% | |
| GTCAAATATCATGCAATTGA+GGG | - | chr2_1:19402554-19402573 | None:intergenic | 30.0% | |
| TGTCAAATATCATGCAATTG+AGG | - | chr2_1:19402555-19402574 | None:intergenic | 30.0% | |
| ! | GTAAAAAAGTATAGGGACAT+TGG | - | chr2_1:19402910-19402929 | None:intergenic | 30.0% |
| !! | ACCAAACTTGGTTTTTGTAT+AGG | + | chr2_1:19403072-19403091 | Msa0199960:intron | 30.0% |
| TCCTATACAAAAACCAAGTT+TGG | - | chr2_1:19403076-19403095 | None:intergenic | 30.0% | |
| GGTTCTTGAAATATTGTTTC+AGG | + | chr2_1:19403180-19403199 | Msa0199960:intron | 30.0% | |
| TCTTGAAATATTGTTTCAGG+TGG | + | chr2_1:19403183-19403202 | Msa0199960:intron | 30.0% | |
| ! | AATATTGTTTCAGGTGGTTA+TGG | + | chr2_1:19403189-19403208 | Msa0199960:intron | 30.0% |
| ! | ATATTGTTTCAGGTGGTTAT+GGG | + | chr2_1:19403190-19403209 | Msa0199960:intron | 30.0% |
| TCATCACAATAGAATTGATC+AGG | - | chr2_1:19403270-19403289 | None:intergenic | 30.0% | |
| TTCTTGATGCCTTTAATAAC+AGG | + | chr2_1:19403496-19403515 | Msa0199960:intron | 30.0% | |
| GTTTAATAGATCCACTTTCA+AGG | - | chr2_1:19403550-19403569 | None:intergenic | 30.0% | |
| TTTGTTCTATGTATTCTGGA+TGG | - | chr2_1:19403572-19403591 | None:intergenic | 30.0% | |
| ! | GCATTTTGTTCTATGTATTC+TGG | - | chr2_1:19403576-19403595 | None:intergenic | 30.0% |
| CATAGAACAAAATGCAACAT+TGG | + | chr2_1:19403581-19403600 | Msa0199960:CDS | 30.0% | |
| TTTCCAACAAAAACATCATG+TGG | - | chr2_1:19403663-19403682 | None:intergenic | 30.0% | |
| !!! | GACAATGTGTCATTTTTTGT+TGG | - | chr2_1:19403693-19403712 | None:intergenic | 30.0% |
| AAAATGACACATTGTCCAAA+AGG | + | chr2_1:19403697-19403716 | Msa0199960:CDS | 30.0% | |
| AAATGACACATTGTCCAAAA+GGG | + | chr2_1:19403698-19403717 | Msa0199960:CDS | 30.0% | |
| TACCTTGATTTATTAGGAGT+TGG | + | chr2_1:19403825-19403844 | Msa0199960:CDS | 30.0% | |
| TACCAACTCCTAATAAATCA+AGG | - | chr2_1:19403830-19403849 | None:intergenic | 30.0% | |
| TGAAGAGATCTTTACTTGTT+TGG | + | chr2_1:19403936-19403955 | Msa0199960:exon | 30.0% | |
| GTTTGGTTGTGAATTAATCT+TGG | + | chr2_1:19403953-19403972 | Msa0199960:three_prime_UTR | 30.0% | |
| !! | GAGGAATTGATTTTCAGAGT+TGG | - | chr2_1:19401843-19401862 | None:intergenic | 35.0% |
| GTGATGTTAAGTGAAAAGGA+TGG | - | chr2_1:19401889-19401908 | None:intergenic | 35.0% | |
| !!! | CATGTTATGTGTGTTGCTTT+TGG | - | chr2_1:19401956-19401975 | None:intergenic | 35.0% |
| CCATTGGTGAAAACAGTAAA+GGG | + | chr2_1:19402074-19402093 | Msa0199960:CDS | 35.0% | |
| GGAAAGAAACTATGTGACAA+AGG | + | chr2_1:19402095-19402114 | Msa0199960:CDS | 35.0% | |
| GTCAGGACATCGATAATTAT+TGG | - | chr2_1:19402737-19402756 | None:intergenic | 35.0% | |
| GTTGAGATATGGATCATTTG+TGG | - | chr2_1:19402783-19402802 | None:intergenic | 35.0% | |
| ATTGTGTGTGTGTTGAGATA+TGG | - | chr2_1:19402794-19402813 | None:intergenic | 35.0% | |
| ! | GTTTTGTCCTATACAACTCA+TGG | - | chr2_1:19402932-19402951 | None:intergenic | 35.0% |
| ! | TATTGTTTCAGGTGGTTATG+GGG | + | chr2_1:19403191-19403210 | Msa0199960:intron | 35.0% |
| AAACAAGTAATGAGTCTCAG+TGG | - | chr2_1:19403427-19403446 | None:intergenic | 35.0% | |
| ACAAAAACATCATGTGGTGA+AGG | - | chr2_1:19403657-19403676 | None:intergenic | 35.0% | |
| !! | TCACCACATGATGTTTTTGT+TGG | + | chr2_1:19403657-19403676 | Msa0199960:CDS | 35.0% |
| TTGCTTCATTATCAGAACCT+TGG | - | chr2_1:19403776-19403795 | None:intergenic | 35.0% | |
| GCACAAGAGAGAATTTCATT+AGG | - | chr2_1:19403867-19403886 | None:intergenic | 35.0% | |
| !! | CTTCAAGTTGTTGAAGAAGA+AGG | - | chr2_1:19403921-19403940 | None:intergenic | 35.0% |
| GGTTGTGAATTAATCTTGGT+TGG | + | chr2_1:19403957-19403976 | Msa0199960:three_prime_UTR | 35.0% | |
| !! | GAGGAATTGATTTTCAGAGT+TGG | - | chr2_1:19401843-19401862 | None:intergenic | 35.0% |
| GTGATGTTAAGTGAAAAGGA+TGG | - | chr2_1:19401889-19401908 | None:intergenic | 35.0% | |
| !!! | CATGTTATGTGTGTTGCTTT+TGG | - | chr2_1:19401956-19401975 | None:intergenic | 35.0% |
| CCATTGGTGAAAACAGTAAA+GGG | + | chr2_1:19402074-19402093 | Msa0199960:CDS | 35.0% | |
| GGAAAGAAACTATGTGACAA+AGG | + | chr2_1:19402095-19402114 | Msa0199960:CDS | 35.0% | |
| GTCAGGACATCGATAATTAT+TGG | - | chr2_1:19402737-19402756 | None:intergenic | 35.0% | |
| GTTGAGATATGGATCATTTG+TGG | - | chr2_1:19402783-19402802 | None:intergenic | 35.0% | |
| ATTGTGTGTGTGTTGAGATA+TGG | - | chr2_1:19402794-19402813 | None:intergenic | 35.0% | |
| ! | GTTTTGTCCTATACAACTCA+TGG | - | chr2_1:19402932-19402951 | None:intergenic | 35.0% |
| ! | TATTGTTTCAGGTGGTTATG+GGG | + | chr2_1:19403191-19403210 | Msa0199960:intron | 35.0% |
| AAACAAGTAATGAGTCTCAG+TGG | - | chr2_1:19403427-19403446 | None:intergenic | 35.0% | |
| ACAAAAACATCATGTGGTGA+AGG | - | chr2_1:19403657-19403676 | None:intergenic | 35.0% | |
| !! | TCACCACATGATGTTTTTGT+TGG | + | chr2_1:19403657-19403676 | Msa0199960:CDS | 35.0% |
| TTGCTTCATTATCAGAACCT+TGG | - | chr2_1:19403776-19403795 | None:intergenic | 35.0% | |
| GCACAAGAGAGAATTTCATT+AGG | - | chr2_1:19403867-19403886 | None:intergenic | 35.0% | |
| !! | CTTCAAGTTGTTGAAGAAGA+AGG | - | chr2_1:19403921-19403940 | None:intergenic | 35.0% |
| GGTTGTGAATTAATCTTGGT+TGG | + | chr2_1:19403957-19403976 | Msa0199960:three_prime_UTR | 35.0% | |
| ACAAACATCAGTGAAGCCAT+TGG | + | chr2_1:19402058-19402077 | Msa0199960:CDS | 40.0% | |
| GCCATTGGTGAAAACAGTAA+AGG | + | chr2_1:19402073-19402092 | Msa0199960:CDS | 40.0% | |
| ! | CCCTTTACTGTTTTCACCAA+TGG | - | chr2_1:19402077-19402096 | None:intergenic | 40.0% |
| AGAAACTATGTGACAAAGGG+TGG | + | chr2_1:19402099-19402118 | Msa0199960:CDS | 40.0% | |
| GAAACTATGTGACAAAGGGT+GGG | + | chr2_1:19402100-19402119 | Msa0199960:CDS | 40.0% | |
| CTTTATGAGCCTCTTGGATT+TGG | + | chr2_1:19402275-19402294 | Msa0199960:CDS | 40.0% | |
| TTTCAGTCATTCACGTAGTC+AGG | - | chr2_1:19402754-19402773 | None:intergenic | 40.0% | |
| !! | TTCGGTTCTAAAGAGTCAAG+CGG | + | chr2_1:19402821-19402840 | Msa0199960:intron | 40.0% |
| TAGCGCTTATACACCAAACT+TGG | + | chr2_1:19403060-19403079 | Msa0199960:intron | 40.0% | |
| ATGGGGCTTATGCTACAATA+AGG | + | chr2_1:19403236-19403255 | Msa0199960:intron | 40.0% | |
| TTAACCTATCCATGTAGTCC+TGG | + | chr2_1:19403300-19403319 | Msa0199960:intron | 40.0% | |
| AATAAATAGGTATGGCGCCA+CGG | - | chr2_1:19403341-19403360 | None:intergenic | 40.0% | |
| GCATCAAGAAAGACAACGTA+AGG | - | chr2_1:19403486-19403505 | None:intergenic | 40.0% | |
| !! | GAAGGTATGTGTTTTTCTGG+TGG | - | chr2_1:19403639-19403658 | None:intergenic | 40.0% |
| !! | GGTGAAGGTATGTGTTTTTC+TGG | - | chr2_1:19403642-19403661 | None:intergenic | 40.0% |
| TTTATTGTGGCACCAAATCC+AGG | - | chr2_1:19403726-19403745 | None:intergenic | 40.0% | |
| !! | ATTAGGAGTTGGTAGAGAAG+AGG | + | chr2_1:19403836-19403855 | Msa0199960:CDS | 40.0% |
| !!! | CAAGCTGCTTTTAAACCAAC+TGG | + | chr2_1:19403891-19403910 | Msa0199960:CDS | 40.0% |
| ACAAACATCAGTGAAGCCAT+TGG | + | chr2_1:19402058-19402077 | Msa0199960:CDS | 40.0% | |
| GCCATTGGTGAAAACAGTAA+AGG | + | chr2_1:19402073-19402092 | Msa0199960:CDS | 40.0% | |
| ! | CCCTTTACTGTTTTCACCAA+TGG | - | chr2_1:19402077-19402096 | None:intergenic | 40.0% |
| AGAAACTATGTGACAAAGGG+TGG | + | chr2_1:19402099-19402118 | Msa0199960:CDS | 40.0% | |
| GAAACTATGTGACAAAGGGT+GGG | + | chr2_1:19402100-19402119 | Msa0199960:CDS | 40.0% | |
| CTTTATGAGCCTCTTGGATT+TGG | + | chr2_1:19402275-19402294 | Msa0199960:CDS | 40.0% | |
| TTTCAGTCATTCACGTAGTC+AGG | - | chr2_1:19402754-19402773 | None:intergenic | 40.0% | |
| !! | TTCGGTTCTAAAGAGTCAAG+CGG | + | chr2_1:19402821-19402840 | Msa0199960:intron | 40.0% |
| TAGCGCTTATACACCAAACT+TGG | + | chr2_1:19403060-19403079 | Msa0199960:intron | 40.0% | |
| ATGGGGCTTATGCTACAATA+AGG | + | chr2_1:19403236-19403255 | Msa0199960:intron | 40.0% | |
| TTAACCTATCCATGTAGTCC+TGG | + | chr2_1:19403300-19403319 | Msa0199960:intron | 40.0% | |
| AATAAATAGGTATGGCGCCA+CGG | - | chr2_1:19403341-19403360 | None:intergenic | 40.0% | |
| GCATCAAGAAAGACAACGTA+AGG | - | chr2_1:19403486-19403505 | None:intergenic | 40.0% | |
| !! | GAAGGTATGTGTTTTTCTGG+TGG | - | chr2_1:19403639-19403658 | None:intergenic | 40.0% |
| !! | GGTGAAGGTATGTGTTTTTC+TGG | - | chr2_1:19403642-19403661 | None:intergenic | 40.0% |
| TTTATTGTGGCACCAAATCC+AGG | - | chr2_1:19403726-19403745 | None:intergenic | 40.0% | |
| !! | ATTAGGAGTTGGTAGAGAAG+AGG | + | chr2_1:19403836-19403855 | Msa0199960:CDS | 40.0% |
| !!! | CAAGCTGCTTTTAAACCAAC+TGG | + | chr2_1:19403891-19403910 | Msa0199960:CDS | 40.0% |
| GACAAAGGGTGGGAATGTAA+AGG | + | chr2_1:19402110-19402129 | Msa0199960:CDS | 45.0% | |
| AAGGGTGGGAATGTAAAGGT+TGG | + | chr2_1:19402114-19402133 | Msa0199960:CDS | 45.0% | |
| CTCGAAACGGAATGATCCAA+CGG | + | chr2_1:19402202-19402221 | Msa0199960:CDS | 45.0% | |
| ! | GGCACATGCTTCTGGATTTT+GGG | + | chr2_1:19402223-19402242 | Msa0199960:CDS | 45.0% |
| !! | CCAGAAGTACCAAATCCAAG+AGG | - | chr2_1:19402287-19402306 | None:intergenic | 45.0% |
| ! | CCTCTTGGATTTGGTACTTC+TGG | + | chr2_1:19402284-19402303 | Msa0199960:CDS | 45.0% |
| ! | CTTGGATTTGGTACTTCTGG+TGG | + | chr2_1:19402287-19402306 | Msa0199960:CDS | 45.0% |
| AAAGCATGGTGGTCAGAAAG+AGG | + | chr2_1:19402310-19402329 | Msa0199960:CDS | 45.0% | |
| !! | AAAGAGGTTGCTGCTTTCCT+TGG | + | chr2_1:19402326-19402345 | Msa0199960:CDS | 45.0% |
| TCTTGCTTCCAACATGACCA+AGG | - | chr2_1:19402346-19402365 | None:intergenic | 45.0% | |
| TAGCATAAGCCCCATGCAAA+GGG | - | chr2_1:19403231-19403250 | None:intergenic | 45.0% | |
| GTGGCGCCATACCTATTTAT+TGG | + | chr2_1:19403340-19403359 | Msa0199960:intron | 45.0% | |
| TAATGAGTCTCAGTGGAACG+TGG | - | chr2_1:19403420-19403439 | None:intergenic | 45.0% | |
| AATTGGGGAAGCCTTGAAAG+TGG | + | chr2_1:19403536-19403555 | Msa0199960:CDS | 45.0% | |
| !! | TTTCCATAGTGCTGCTTGGA+AGG | - | chr2_1:19403607-19403626 | None:intergenic | 45.0% |
| TCCAAGCAGCACTATGGAAA+TGG | + | chr2_1:19403607-19403626 | Msa0199960:CDS | 45.0% | |
| ! | TCCATTTCCATAGTGCTGCT+TGG | - | chr2_1:19403611-19403630 | None:intergenic | 45.0% |
| !! | ACATTGTCCAAAAGGGTACC+TGG | + | chr2_1:19403705-19403724 | Msa0199960:CDS | 45.0% |
| !! | TCCAAAAGGGTACCTGGATT+TGG | + | chr2_1:19403711-19403730 | Msa0199960:CDS | 45.0% |
| ! | ACCAAATCCAGGTACCCTTT+TGG | - | chr2_1:19403715-19403734 | None:intergenic | 45.0% |
| GGTGATCAAGTTTGTGACCA+AGG | + | chr2_1:19403756-19403775 | Msa0199960:CDS | 45.0% | |
| GACAAAGGGTGGGAATGTAA+AGG | + | chr2_1:19402110-19402129 | Msa0199960:CDS | 45.0% | |
| AAGGGTGGGAATGTAAAGGT+TGG | + | chr2_1:19402114-19402133 | Msa0199960:CDS | 45.0% | |
| CTCGAAACGGAATGATCCAA+CGG | + | chr2_1:19402202-19402221 | Msa0199960:CDS | 45.0% | |
| ! | GGCACATGCTTCTGGATTTT+GGG | + | chr2_1:19402223-19402242 | Msa0199960:CDS | 45.0% |
| !! | CCAGAAGTACCAAATCCAAG+AGG | - | chr2_1:19402287-19402306 | None:intergenic | 45.0% |
| ! | CCTCTTGGATTTGGTACTTC+TGG | + | chr2_1:19402284-19402303 | Msa0199960:CDS | 45.0% |
| ! | CTTGGATTTGGTACTTCTGG+TGG | + | chr2_1:19402287-19402306 | Msa0199960:CDS | 45.0% |
| AAAGCATGGTGGTCAGAAAG+AGG | + | chr2_1:19402310-19402329 | Msa0199960:CDS | 45.0% | |
| !! | AAAGAGGTTGCTGCTTTCCT+TGG | + | chr2_1:19402326-19402345 | Msa0199960:CDS | 45.0% |
| TCTTGCTTCCAACATGACCA+AGG | - | chr2_1:19402346-19402365 | None:intergenic | 45.0% | |
| TAGCATAAGCCCCATGCAAA+GGG | - | chr2_1:19403231-19403250 | None:intergenic | 45.0% | |
| GTGGCGCCATACCTATTTAT+TGG | + | chr2_1:19403340-19403359 | Msa0199960:intron | 45.0% | |
| TAATGAGTCTCAGTGGAACG+TGG | - | chr2_1:19403420-19403439 | None:intergenic | 45.0% | |
| AATTGGGGAAGCCTTGAAAG+TGG | + | chr2_1:19403536-19403555 | Msa0199960:CDS | 45.0% | |
| !! | TTTCCATAGTGCTGCTTGGA+AGG | - | chr2_1:19403607-19403626 | None:intergenic | 45.0% |
| TCCAAGCAGCACTATGGAAA+TGG | + | chr2_1:19403607-19403626 | Msa0199960:CDS | 45.0% | |
| ! | TCCATTTCCATAGTGCTGCT+TGG | - | chr2_1:19403611-19403630 | None:intergenic | 45.0% |
| !! | ACATTGTCCAAAAGGGTACC+TGG | + | chr2_1:19403705-19403724 | Msa0199960:CDS | 45.0% |
| !! | TCCAAAAGGGTACCTGGATT+TGG | + | chr2_1:19403711-19403730 | Msa0199960:CDS | 45.0% |
| ! | ACCAAATCCAGGTACCCTTT+TGG | - | chr2_1:19403715-19403734 | None:intergenic | 45.0% |
| GGTGATCAAGTTTGTGACCA+AGG | + | chr2_1:19403756-19403775 | Msa0199960:CDS | 45.0% | |
| ! | AATCCAGAAGCATGTGCCGT+TGG | - | chr2_1:19402221-19402240 | None:intergenic | 50.0% |
| ! | CGGCACATGCTTCTGGATTT+TGG | + | chr2_1:19402222-19402241 | Msa0199960:CDS | 50.0% |
| GCTGCACTTTATGAGCCTCT+TGG | + | chr2_1:19402269-19402288 | Msa0199960:CDS | 50.0% | |
| GGTACTTCTGGTGGAAAGCA+TGG | + | chr2_1:19402296-19402315 | Msa0199960:CDS | 50.0% | |
| ! | ACTTCTGGTGGAAAGCATGG+TGG | + | chr2_1:19402299-19402318 | Msa0199960:CDS | 50.0% |
| ! | GCTGCTTTCCTTGGTCATGT+TGG | + | chr2_1:19402335-19402354 | Msa0199960:CDS | 50.0% |
| ! | TGTTTCAGGTGGTTATGGGG+TGG | + | chr2_1:19403194-19403213 | Msa0199960:intron | 50.0% |
| GTAGCATAAGCCCCATGCAA+AGG | - | chr2_1:19403232-19403251 | None:intergenic | 50.0% | |
| TGCACCAGGACTACATGGAT+AGG | - | chr2_1:19403307-19403326 | None:intergenic | 50.0% | |
| TATGCTGCACCAGGACTACA+TGG | - | chr2_1:19403312-19403331 | None:intergenic | 50.0% | |
| AGTCCTGGTGCAGCATACTA+TGG | + | chr2_1:19403315-19403334 | Msa0199960:intron | 50.0% | |
| !! | GAGTTGGTAGAGAAGAGGCA+GGG | + | chr2_1:19403841-19403860 | Msa0199960:CDS | 50.0% |
| GAAGAAGAAGGTGAGCCAGT+TGG | - | chr2_1:19403909-19403928 | None:intergenic | 50.0% | |
| ! | AATCCAGAAGCATGTGCCGT+TGG | - | chr2_1:19402221-19402240 | None:intergenic | 50.0% |
| ! | CGGCACATGCTTCTGGATTT+TGG | + | chr2_1:19402222-19402241 | Msa0199960:CDS | 50.0% |
| GCTGCACTTTATGAGCCTCT+TGG | + | chr2_1:19402269-19402288 | Msa0199960:CDS | 50.0% | |
| GGTACTTCTGGTGGAAAGCA+TGG | + | chr2_1:19402296-19402315 | Msa0199960:CDS | 50.0% | |
| ! | ACTTCTGGTGGAAAGCATGG+TGG | + | chr2_1:19402299-19402318 | Msa0199960:CDS | 50.0% |
| ! | GCTGCTTTCCTTGGTCATGT+TGG | + | chr2_1:19402335-19402354 | Msa0199960:CDS | 50.0% |
| ! | TGTTTCAGGTGGTTATGGGG+TGG | + | chr2_1:19403194-19403213 | Msa0199960:intron | 50.0% |
| GTAGCATAAGCCCCATGCAA+AGG | - | chr2_1:19403232-19403251 | None:intergenic | 50.0% | |
| TGCACCAGGACTACATGGAT+AGG | - | chr2_1:19403307-19403326 | None:intergenic | 50.0% | |
| TATGCTGCACCAGGACTACA+TGG | - | chr2_1:19403312-19403331 | None:intergenic | 50.0% | |
| AGTCCTGGTGCAGCATACTA+TGG | + | chr2_1:19403315-19403334 | Msa0199960:intron | 50.0% | |
| !! | GAGTTGGTAGAGAAGAGGCA+GGG | + | chr2_1:19403841-19403860 | Msa0199960:CDS | 50.0% |
| GAAGAAGAAGGTGAGCCAGT+TGG | - | chr2_1:19403909-19403928 | None:intergenic | 50.0% | |
| GATCCAACGGCACATGCTTC+TGG | + | chr2_1:19402215-19402234 | Msa0199960:CDS | 55.0% | |
| GTGGTTATGGGGTGGCTACT+GGG | + | chr2_1:19403202-19403221 | Msa0199960:intron | 55.0% | |
| TGGTTATGGGGTGGCTACTG+GGG | + | chr2_1:19403203-19403222 | Msa0199960:intron | 55.0% | |
| TACTGGGGGACCCTTTGCAT+GGG | + | chr2_1:19403218-19403237 | Msa0199960:intron | 55.0% | |
| TGGCCTTCCAAGCAGCACTA+TGG | + | chr2_1:19403601-19403620 | Msa0199960:CDS | 55.0% | |
| !! | GGAGTTGGTAGAGAAGAGGC+AGG | + | chr2_1:19403840-19403859 | Msa0199960:CDS | 55.0% |
| GATCCAACGGCACATGCTTC+TGG | + | chr2_1:19402215-19402234 | Msa0199960:CDS | 55.0% | |
| GTGGTTATGGGGTGGCTACT+GGG | + | chr2_1:19403202-19403221 | Msa0199960:intron | 55.0% | |
| TGGTTATGGGGTGGCTACTG+GGG | + | chr2_1:19403203-19403222 | Msa0199960:intron | 55.0% | |
| TACTGGGGGACCCTTTGCAT+GGG | + | chr2_1:19403218-19403237 | Msa0199960:intron | 55.0% | |
| TGGCCTTCCAAGCAGCACTA+TGG | + | chr2_1:19403601-19403620 | Msa0199960:CDS | 55.0% | |
| !! | GGAGTTGGTAGAGAAGAGGC+AGG | + | chr2_1:19403840-19403859 | Msa0199960:CDS | 55.0% |
| GGTGGTTATGGGGTGGCTAC+TGG | + | chr2_1:19403201-19403220 | Msa0199960:intron | 60.0% | |
| GGTTATGGGGTGGCTACTGG+GGG | + | chr2_1:19403204-19403223 | Msa0199960:intron | 60.0% | |
| CTACTGGGGGACCCTTTGCA+TGG | + | chr2_1:19403217-19403236 | Msa0199960:intron | 60.0% | |
| ACTGGGGGACCCTTTGCATG+GGG | + | chr2_1:19403219-19403238 | Msa0199960:intron | 60.0% | |
| CGGCCATAGTATGCTGCACC+AGG | - | chr2_1:19403321-19403340 | None:intergenic | 60.0% | |
| GGTGCAGCATACTATGGCCG+TGG | + | chr2_1:19403321-19403340 | Msa0199960:intron | 60.0% | |
| GGTGGTTATGGGGTGGCTAC+TGG | + | chr2_1:19403201-19403220 | Msa0199960:intron | 60.0% | |
| GGTTATGGGGTGGCTACTGG+GGG | + | chr2_1:19403204-19403223 | Msa0199960:intron | 60.0% | |
| CTACTGGGGGACCCTTTGCA+TGG | + | chr2_1:19403217-19403236 | Msa0199960:intron | 60.0% | |
| ACTGGGGGACCCTTTGCATG+GGG | + | chr2_1:19403219-19403238 | Msa0199960:intron | 60.0% | |
| CGGCCATAGTATGCTGCACC+AGG | - | chr2_1:19403321-19403340 | None:intergenic | 60.0% | |
| GGTGCAGCATACTATGGCCG+TGG | + | chr2_1:19403321-19403340 | Msa0199960:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 19401824 | 19404276 | 19401824 | ID=Msa0199960;Name=Msa0199960 |
| chr2_1 | mRNA | 19401824 | 19404276 | 19401824 | ID=Msa0199960-mRNA-1;Parent=Msa0199960;Name=Msa0199960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=172|0|0.66|0.66|0|0.33|3|338|270 |
| chr2_1 | exon | 19401824 | 19402371 | 19401824 | ID=Msa0199960-mRNA-1:exon:8134;Parent=Msa0199960-mRNA-1 |
| chr2_1 | exon | 19403165 | 19403180 | 19403165 | ID=Msa0199960-mRNA-1:exon:8135;Parent=Msa0199960-mRNA-1 |
| chr2_1 | exon | 19403518 | 19404276 | 19403518 | ID=Msa0199960-mRNA-1:exon:8136;Parent=Msa0199960-mRNA-1 |
| chr2_1 | five_prime_UTR | 19401824 | 19401995 | 19401824 | ID=Msa0199960-mRNA-1:five_prime_utr;Parent=Msa0199960-mRNA-1 |
| chr2_1 | CDS | 19401996 | 19402371 | 19401996 | ID=Msa0199960-mRNA-1:cds;Parent=Msa0199960-mRNA-1 |
| chr2_1 | CDS | 19403165 | 19403180 | 19403165 | ID=Msa0199960-mRNA-1:cds;Parent=Msa0199960-mRNA-1 |
| chr2_1 | CDS | 19403518 | 19403938 | 19403518 | ID=Msa0199960-mRNA-1:cds;Parent=Msa0199960-mRNA-1 |
| chr2_1 | three_prime_UTR | 19403939 | 19404276 | 19403939 | ID=Msa0199960-mRNA-1:three_prime_utr;Parent=Msa0199960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
