Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238030 | XP_013444870.1 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 9.72e-130 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238030 | sp|P93788|REMO_SOLTU | 57.820 | 211 | 65 | 6 | 1 | 200 | 1 | 198 | 3.14e-66 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238030 | A0A072TZF0 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 4.64e-130 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1238030 | Msa1318620 | 0.866584 | 2.561537e-65 | -8.615850e-47 |
| Msa1238030 | Msa1333970 | 0.801768 | 7.705602e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238030 | MtrunA17_Chr8g0349271 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 8.94e-134 | 373 |
| Msa1238030 | MtrunA17_Chr1g0203401 | 58.854 | 192 | 66 | 3 | 22 | 200 | 18 | 209 | 1.27e-60 | 188 |
| Msa1238030 | MtrunA17_Chr5g0397781 | 59.836 | 122 | 49 | 0 | 79 | 200 | 86 | 207 | 4.75e-44 | 145 |
| Msa1238030 | MtrunA17_Chr8g0386521 | 52.000 | 125 | 60 | 0 | 76 | 200 | 74 | 198 | 6.89e-41 | 137 |
| Msa1238030 | MtrunA17_Chr7g0247121 | 64.615 | 65 | 23 | 0 | 136 | 200 | 34 | 98 | 1.62e-26 | 97.4 |
| Msa1238030 | MtrunA17_Chr1g0173571 | 31.148 | 122 | 84 | 0 | 74 | 195 | 148 | 269 | 2.28e-12 | 64.3 |
| Msa1238030 | MtrunA17_Chr1g0153281 | 32.743 | 113 | 75 | 1 | 88 | 200 | 504 | 615 | 2.53e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238030 | AT3G61260.1 | 63.030 | 165 | 57 | 3 | 40 | 200 | 48 | 212 | 9.90e-64 | 196 |
| Msa1238030 | AT3G48940.1 | 58.784 | 148 | 61 | 0 | 53 | 200 | 28 | 175 | 3.95e-56 | 176 |
| Msa1238030 | AT5G23750.2 | 51.707 | 205 | 90 | 4 | 1 | 200 | 1 | 201 | 1.10e-55 | 176 |
| Msa1238030 | AT2G45820.1 | 57.754 | 187 | 61 | 4 | 17 | 200 | 19 | 190 | 4.56e-54 | 171 |
| Msa1238030 | AT5G23750.1 | 63.492 | 126 | 46 | 0 | 75 | 200 | 77 | 202 | 1.96e-53 | 170 |
| Msa1238030 | AT5G23750.3 | 63.492 | 126 | 46 | 0 | 75 | 200 | 104 | 229 | 2.48e-53 | 170 |
| Msa1238030 | AT1G63295.1 | 43.802 | 121 | 65 | 2 | 83 | 200 | 31 | 151 | 8.56e-23 | 90.1 |
| Msa1238030 | AT1G63295.2 | 43.802 | 121 | 65 | 2 | 83 | 200 | 71 | 191 | 1.64e-22 | 90.5 |
| Msa1238030 | AT4G00670.1 | 42.991 | 107 | 60 | 1 | 95 | 200 | 17 | 123 | 3.80e-22 | 87.4 |
| Msa1238030 | AT1G30320.1 | 37.037 | 108 | 64 | 1 | 97 | 200 | 401 | 508 | 1.31e-11 | 63.2 |
Find 65 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTGCTCTTGCAGAAAT+TGG | 0.109628 | 8_2:-17754241 | Msa1238030:CDS |
| AGCAAGAAAGAAGAAGTTTA+AGG | 0.152605 | 8_2:+17756852 | None:intergenic |
| TATAGACAAAATTTCATAAT+TGG | 0.216142 | 8_2:+17752844 | None:intergenic |
| AAGCATCCAAGGAGTTTCTT+AGG | 0.249945 | 8_2:+17752883 | None:intergenic |
| TAATTACTATATAAAACTAT+TGG | 0.275200 | 8_2:-17752668 | Msa1238030:three_prime_UTR |
| TTCTTACTTATTCTCTGCTT+TGG | 0.294744 | 8_2:+17754168 | None:intergenic |
| TGGACAGCAAAGAGGATCTT+TGG | 0.315757 | 8_2:-17752730 | Msa1238030:three_prime_UTR |
| GAGCTGCTTCTTGCTTGGTT+TGG | 0.324036 | 8_2:+17756790 | None:intergenic |
| AATTACTATATAAAACTATT+GGG | 0.341068 | 8_2:-17752667 | Msa1238030:three_prime_UTR |
| AACACCTTGGCAGGAGCAAT+TGG | 0.371314 | 8_2:-17753064 | Msa1238030:intron |
| GCTCTCTACTGTTGCTGCTT+GGG | 0.383440 | 8_2:-17753844 | Msa1238030:CDS |
| AGCAGGAGCTGCTTCTTGCT+TGG | 0.388314 | 8_2:+17756785 | None:intergenic |
| GGCTCAACCGCAGCAGGAGC+TGG | 0.397851 | 8_2:+17756732 | None:intergenic |
| ACCGGTGCCGGTGCCGGAGC+AGG | 0.401388 | 8_2:+17756762 | None:intergenic |
| TCCTGCTCCGGCACCGGCAC+CGG | 0.408876 | 8_2:-17756763 | Msa1238030:CDS |
| ATGAAAGGAAATTTAGAAGT+AGG | 0.417031 | 8_2:+17752554 | None:intergenic |
| GCTGCAAAACATAATGCAAC+TGG | 0.428407 | 8_2:-17752913 | Msa1238030:CDS |
| ACAATGTATAGTTGGTAGAT+TGG | 0.429592 | 8_2:+17752503 | None:intergenic |
| TCCTGCTCCTGCTCCGGCAC+CGG | 0.430113 | 8_2:-17756769 | Msa1238030:CDS |
| GTTGGAACCGGTGCCGGTGC+CGG | 0.434603 | 8_2:+17756756 | None:intergenic |
| ACCTCTAGCTGAGGCTCCTC+CGG | 0.444094 | 8_2:-17756709 | Msa1238030:CDS |
| GTGTGTGAGTGTAAAAGTTA+TGG | 0.444682 | 8_2:-17752781 | Msa1238030:three_prime_UTR |
| ATATTGCTCTTGCAGAAATT+GGG | 0.445917 | 8_2:-17754240 | Msa1238030:CDS |
| CAGAAATTGGGAAAGAGAAA+AGG | 0.446160 | 8_2:-17754228 | Msa1238030:CDS |
| AGAGGTGGCTCAACCGCAGC+AGG | 0.447015 | 8_2:+17756726 | None:intergenic |
| GCCGGTGCCGGAGCAGGAGC+AGG | 0.452071 | 8_2:+17756768 | None:intergenic |
| AGCTCTCTACTGTTGCTGCT+TGG | 0.453757 | 8_2:-17753845 | Msa1238030:CDS |
| AGCAGCTCCTGCTCCTGCTC+CGG | 0.467219 | 8_2:-17756775 | Msa1238030:CDS |
| GCAGGAGCTGGAGTTGGAAC+CGG | 0.472694 | 8_2:+17756744 | None:intergenic |
| GCTGGAGTTGGAACCGGTGC+CGG | 0.491097 | 8_2:+17756750 | None:intergenic |
| AACAAGACTAACCTCTATCA+AGG | 0.505662 | 8_2:+17754563 | None:intergenic |
| AAGAATGCATCCCTTGATAG+AGG | 0.508900 | 8_2:-17754574 | Msa1238030:intron |
| GGTTATCTAATGTGAAGGCA+TGG | 0.509564 | 8_2:-17754207 | Msa1238030:CDS |
| TTGGTTTGGAGTTCAGCCAT+AGG | 0.510361 | 8_2:+17756804 | None:intergenic |
| TATGGAAAGGGAAAATACAT+TGG | 0.512674 | 8_2:-17752763 | Msa1238030:three_prime_UTR |
| ACTGTTCCTAAGAAACTCCT+TGG | 0.521820 | 8_2:-17752889 | Msa1238030:CDS |
| GTGTCATCTGCCACAGGTGG+CGG | 0.529057 | 8_2:+17756657 | None:intergenic |
| CATCATATTAAAAGCATCCA+AGG | 0.533934 | 8_2:+17752872 | None:intergenic |
| AATCAAGAACAAGGTGGCAA+TGG | 0.536099 | 8_2:-17753013 | Msa1238030:CDS |
| ACCGCAGCAGGAGCTGGAGT+TGG | 0.536338 | 8_2:+17756738 | None:intergenic |
| CACAAAAGCACTTGTTGTTG+TGG | 0.554801 | 8_2:-17756637 | Msa1238030:CDS |
| GTTATCTAATGTGAAGGCAT+GGG | 0.574842 | 8_2:-17754206 | Msa1238030:CDS |
| AGCGGCGGCACCGCCACCTG+TGG | 0.575668 | 8_2:-17756667 | Msa1238030:CDS |
| TCCAACTCCAGCTCCTGCTG+CGG | 0.577619 | 8_2:-17756739 | Msa1238030:CDS |
| GGAAAGGGAAAATACATTGG+AGG | 0.579726 | 8_2:-17752760 | Msa1238030:three_prime_UTR |
| GAAAAGGTTATCTAATGTGA+AGG | 0.581637 | 8_2:-17754212 | Msa1238030:CDS |
| GAGTGTAAAAGTTATGGAAA+GGG | 0.581959 | 8_2:-17752775 | Msa1238030:three_prime_UTR |
| TGAAGCAATTCTCAAGGCAG+AGG | 0.599324 | 8_2:-17752941 | Msa1238030:CDS |
| TAGTGGAAAGAATCAATGAA+AGG | 0.599628 | 8_2:+17752539 | None:intergenic |
| AATACATTGGAGGAACATGT+TGG | 0.602186 | 8_2:-17752750 | Msa1238030:three_prime_UTR |
| ACCGGAGGAGCCTCAGCTAG+AGG | 0.609180 | 8_2:+17756708 | None:intergenic |
| TTGGTTGTGTAATAATGTAG+TGG | 0.621475 | 8_2:+17752522 | None:intergenic |
| ACAAGACTAACCTCTATCAA+GGG | 0.621639 | 8_2:+17754564 | None:intergenic |
| ACGTGCTGAAGCAATTCTCA+AGG | 0.624062 | 8_2:-17752947 | Msa1238030:CDS |
| TGAGTGTAAAAGTTATGGAA+AGG | 0.635435 | 8_2:-17752776 | Msa1238030:three_prime_UTR |
| GGAGGAGCCTCAGCTAGAGG+TGG | 0.640678 | 8_2:+17756711 | None:intergenic |
| TGGTGAGAAAATCAAGAACA+AGG | 0.641835 | 8_2:-17753022 | Msa1238030:CDS |
| AACAAAGAACTTGTGTTGTG+TGG | 0.650192 | 8_2:+17756934 | None:intergenic |
| AATGGTTCACAAACAAGCAG+AGG | 0.652178 | 8_2:-17752995 | Msa1238030:CDS |
| TTTGTGTCATCTGCCACAGG+TGG | 0.658313 | 8_2:+17756654 | None:intergenic |
| TGTTGTTGAAAAGAAAGCGG+CGG | 0.659083 | 8_2:-17756682 | Msa1238030:CDS |
| GGTTGAGCCACCTCTAGCTG+AGG | 0.662051 | 8_2:-17756718 | Msa1238030:CDS |
| GAACATGTTGGACAGCAAAG+AGG | 0.668064 | 8_2:-17752738 | Msa1238030:three_prime_UTR |
| TAATGTTGTTGAAAAGAAAG+CGG | 0.672280 | 8_2:-17756685 | Msa1238030:CDS |
| TGAGAAAATCAAGAACAAGG+TGG | 0.758003 | 8_2:-17753019 | Msa1238030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAGATCAAATATTAATA+AGG | + | chr8_2:17754972-17754991 | None:intergenic | 10.0% |
| !!! | TTATTATTATTGATTAAAAG+AGG | - | chr8_2:17755743-17755762 | Msa1238030:intron | 10.0% |
| !!! | TATTATTATTGATTAAAAGA+GGG | - | chr8_2:17755744-17755763 | Msa1238030:intron | 10.0% |
| !!! | ATAAAGAAGAAAATATTTTT+TGG | + | chr8_2:17756060-17756079 | None:intergenic | 10.0% |
| !! | TAATTACTATATAAAACTAT+TGG | - | chr8_2:17756807-17756826 | Msa1238030:exon | 10.0% |
| !! | AATTACTATATAAAACTATT+GGG | - | chr8_2:17756808-17756827 | Msa1238030:exon | 10.0% |
| !!! | TTTTGAATGAAAAAATTGAA+GGG | - | chr8_2:17752976-17752995 | Msa1238030:CDS | 15.0% |
| !!! | ATAATTCTGATATATGTTTT+TGG | - | chr8_2:17753388-17753407 | Msa1238030:intron | 15.0% |
| !!! | TAATTCTGATATATGTTTTT+GGG | - | chr8_2:17753389-17753408 | Msa1238030:intron | 15.0% |
| !! | AACCTAACTAAATATATAAA+AGG | - | chr8_2:17753742-17753761 | Msa1238030:intron | 15.0% |
| !!! | TCGATAATAATTATAGTTTT+AGG | - | chr8_2:17753927-17753946 | Msa1238030:intron | 15.0% |
| !!! | ATAAGCAAAAATTCATATTT+TGG | - | chr8_2:17754010-17754029 | Msa1238030:intron | 15.0% |
| !!! | AAGAAAATGTATAATTTTCT+AGG | + | chr8_2:17754368-17754387 | None:intergenic | 15.0% |
| !! | TAATGAAAATCACTTTAATT+TGG | + | chr8_2:17754597-17754616 | None:intergenic | 15.0% |
| !!! | TAATTGCATAAAGATATTTT+AGG | - | chr8_2:17755382-17755401 | Msa1238030:intron | 15.0% |
| !!! | AATTGCATAAAGATATTTTA+GGG | - | chr8_2:17755383-17755402 | Msa1238030:intron | 15.0% |
| !!! | TTTTGAGTAAATATCTAAAT+TGG | + | chr8_2:17755470-17755489 | None:intergenic | 15.0% |
| !! | TAATTCCAAATTGTTTAAAA+AGG | + | chr8_2:17756219-17756238 | None:intergenic | 15.0% |
| !! | AACAAAACAAATTCTTTAAA+AGG | + | chr8_2:17756370-17756389 | None:intergenic | 15.0% |
| !! | TATAGACAAAATTTCATAAT+TGG | + | chr8_2:17756634-17756653 | None:intergenic | 15.0% |
| !!! | ATATTTTCTCTAAAGTATTA+AGG | + | chr8_2:17756863-17756882 | None:intergenic | 15.0% |
| !!! | GAATTCCTTCTTTAATTTTT+TGG | - | chr8_2:17752880-17752899 | Msa1238030:CDS | 20.0% |
| !! | AAAAGCCAAAAAATTAAAGA+AGG | + | chr8_2:17752888-17752907 | None:intergenic | 20.0% |
| !! | TGTATCAATATTGTTTCATA+AGG | - | chr8_2:17752947-17752966 | Msa1238030:CDS | 20.0% |
| !!! | GTTTTGAATGAAAAAATTGA+AGG | - | chr8_2:17752975-17752994 | Msa1238030:CDS | 20.0% |
| !! | TTTGAATGAAAAAATTGAAG+GGG | - | chr8_2:17752977-17752996 | Msa1238030:CDS | 20.0% |
| !!! | TTTGAGTTAATTTCAATTGT+TGG | - | chr8_2:17753115-17753134 | Msa1238030:intron | 20.0% |
| !!! | TTATATATTTAGTTAGGTTG+AGG | + | chr8_2:17753741-17753760 | None:intergenic | 20.0% |
| !!! | GACCTTTTATATATTTAGTT+AGG | + | chr8_2:17753747-17753766 | None:intergenic | 20.0% |
| !!! | TATTTTGTTGTCTTAACATT+TGG | + | chr8_2:17754309-17754328 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAAAAGCTACTT+TGG | - | chr8_2:17754383-17754402 | Msa1238030:intron | 20.0% |
| !!! | TCTTTAAAAAAAGCTACTTT+GGG | - | chr8_2:17754384-17754403 | Msa1238030:intron | 20.0% |
| !! | AATATTTCTCTCATATCATT+AGG | - | chr8_2:17754444-17754463 | Msa1238030:intron | 20.0% |
| !! | ATAGAACAAGAAATGATTTA+AGG | + | chr8_2:17754548-17754567 | None:intergenic | 20.0% |
| !!! | TATTTTGAAATCAGTTTAAG+GGG | + | chr8_2:17754621-17754640 | None:intergenic | 20.0% |
| !!! | GTATTTTGAAATCAGTTTAA+GGG | + | chr8_2:17754622-17754641 | None:intergenic | 20.0% |
| !!! | AGTATTTTGAAATCAGTTTA+AGG | + | chr8_2:17754623-17754642 | None:intergenic | 20.0% |
| !! | TTCTTTATTGGATTCTAATT+AGG | + | chr8_2:17754780-17754799 | None:intergenic | 20.0% |
| !! | AATTAGAATCCAATAAAGAA+AGG | - | chr8_2:17754780-17754799 | Msa1238030:intron | 20.0% |
| !! | TCTAAAGATAATTACATCAA+AGG | + | chr8_2:17754822-17754841 | None:intergenic | 20.0% |
| !!! | TATCTTTACCATTTTTCTTT+TGG | - | chr8_2:17754851-17754870 | Msa1238030:intron | 20.0% |
| !!! | TGCAATTAAACTAAGTTTTA+TGG | + | chr8_2:17755370-17755389 | None:intergenic | 20.0% |
| !! | TGTTTAGTATCCTTAAATTT+AGG | - | chr8_2:17755574-17755593 | Msa1238030:intron | 20.0% |
| !! | CACAATAATTCCTAAATTTA+AGG | + | chr8_2:17755587-17755606 | None:intergenic | 20.0% |
| !!! | AATTATTGTGTTTTCTTTAC+AGG | - | chr8_2:17755597-17755616 | Msa1238030:intron | 20.0% |
| !!! | ATTATTGTGTTTTCTTTACA+GGG | - | chr8_2:17755598-17755617 | Msa1238030:intron | 20.0% |
| !!! | AAATATTTTTTGGACAACAT+AGG | + | chr8_2:17756050-17756069 | None:intergenic | 20.0% |
| !! | ATTAGATAAGAAACTCTAAA+CGG | - | chr8_2:17756100-17756119 | Msa1238030:intron | 20.0% |
| !! | AATTGTTTAAAAAGGACTAA+CGG | + | chr8_2:17756211-17756230 | None:intergenic | 20.0% |
| !!! | TTAGTCCTTTTTAAACAATT+TGG | - | chr8_2:17756211-17756230 | Msa1238030:intron | 20.0% |
| !!! | AAATTCTTTAAAAGGACTAA+CGG | + | chr8_2:17756362-17756381 | None:intergenic | 20.0% |
| !! | TTCTTTTCAACAACATTAAC+CGG | + | chr8_2:17752788-17752807 | None:intergenic | 25.0% |
| ! | TAATGTTGTTGAAAAGAAAG+CGG | - | chr8_2:17752790-17752809 | Msa1238030:three_prime_UTR | 25.0% |
| !!! | TTTTTGGCTTTTAGAAATCA+TGG | - | chr8_2:17752896-17752915 | Msa1238030:CDS | 25.0% |
| !!! | TTTTGGCTTTTAGAAATCAT+GGG | - | chr8_2:17752897-17752916 | Msa1238030:CDS | 25.0% |
| ! | GGTGAAAATTAATGAAAGTA+TGG | - | chr8_2:17752998-17753017 | Msa1238030:CDS | 25.0% |
| !!! | ATTTGTTCATTGTTTTGTGA+AGG | - | chr8_2:17753088-17753107 | Msa1238030:intron | 25.0% |
| !!! | AGAACCATTTTTGTATGAAT+TGG | - | chr8_2:17753446-17753465 | Msa1238030:intron | 25.0% |
| !!! | GAACCATTTTTGTATGAATT+GGG | - | chr8_2:17753447-17753466 | Msa1238030:intron | 25.0% |
| ! | TTTCCCAATTCATACAAAAA+TGG | + | chr8_2:17753453-17753472 | None:intergenic | 25.0% |
| ! | ATTTGGAAAATTCATACAAG+AGG | + | chr8_2:17753516-17753535 | None:intergenic | 25.0% |
| !! | TGCCTTTTCATTATTAGTTA+TGG | - | chr8_2:17753573-17753592 | Msa1238030:intron | 25.0% |
| ! | GACCATAACTAATAATGAAA+AGG | + | chr8_2:17753578-17753597 | None:intergenic | 25.0% |
| ! | TTCATTATTAGTTATGGTCT+TGG | - | chr8_2:17753579-17753598 | Msa1238030:intron | 25.0% |
| ! | TATGATGTGACATGTAAATA+TGG | - | chr8_2:17753610-17753629 | Msa1238030:intron | 25.0% |
| ! | ATGATGTGACATGTAAATAT+GGG | - | chr8_2:17753611-17753630 | Msa1238030:intron | 25.0% |
| ! | ACTGAACAATTCATTCTTAA+TGG | + | chr8_2:17753805-17753824 | None:intergenic | 25.0% |
| ! | TTTGATTCCTGAAACAATTT+AGG | - | chr8_2:17753835-17753854 | Msa1238030:CDS | 25.0% |
| ! | TTTCTTAACCAATGCATTTA+AGG | + | chr8_2:17753907-17753926 | None:intergenic | 25.0% |
| ! | CTTAGTTAAGAATGTATGTA+TGG | + | chr8_2:17753970-17753989 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | + | chr8_2:17754110-17754129 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr8_2:17754036-17754055 | None:intergenic | 25.0% |
| !! | AACCACAATAATCTAAAGTT+CGG | + | chr8_2:17754271-17754290 | None:intergenic | 25.0% |
| ! | TAAAAAAATGTATGCAAGCA+AGG | + | chr8_2:17754338-17754357 | None:intergenic | 25.0% |
| !!! | AATCACTTTAATTTGGACAA+AGG | + | chr8_2:17754590-17754609 | None:intergenic | 25.0% |
| !!! | TAAATGATGCTTTGATTTGT+AGG | - | chr8_2:17754681-17754700 | Msa1238030:intron | 25.0% |
| ! | TACATGATTCCTTTCTTTAT+TGG | + | chr8_2:17754792-17754811 | None:intergenic | 25.0% |
| ! | TCTGTAAACCAAAAGAAAAA+TGG | + | chr8_2:17754862-17754881 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTTTGGTTTACAG+AGG | - | chr8_2:17754861-17754880 | Msa1238030:intron | 25.0% |
| ! | AAAAAAACATATTTGAGGAG+TGG | + | chr8_2:17755204-17755223 | None:intergenic | 25.0% |
| !!! | TCCTCAAATATGTTTTTTTG+TGG | - | chr8_2:17755205-17755224 | Msa1238030:intron | 25.0% |
| ! | ACCACAAAAAAACATATTTG+AGG | + | chr8_2:17755209-17755228 | None:intergenic | 25.0% |
| !!! | AGATATTTTAGGGATCATTT+CGG | - | chr8_2:17755393-17755412 | Msa1238030:intron | 25.0% |
| ! | CTATAAATTGTGATGTATGT+TGG | - | chr8_2:17755772-17755791 | Msa1238030:intron | 25.0% |
| !! | AGATAAGCACATCTTTTTAA+AGG | - | chr8_2:17755805-17755824 | Msa1238030:intron | 25.0% |
| ! | TCATATTCTTACTAGACATT+TGG | - | chr8_2:17755971-17755990 | Msa1238030:intron | 25.0% |
| ! | GAAAAAAGCAAGACAATAAT+TGG | + | chr8_2:17756007-17756026 | None:intergenic | 25.0% |
| !!! | ATTGTCTTGCTTTTTTCAAA+TGG | - | chr8_2:17756010-17756029 | Msa1238030:intron | 25.0% |
| ! | CTGATAATACTGATATTGAT+AGG | - | chr8_2:17756312-17756331 | Msa1238030:intron | 25.0% |
| !! | TCATTAAATTTTGAACACCT+TGG | - | chr8_2:17756398-17756417 | Msa1238030:intron | 25.0% |
| !! | AAGAAAACATTTTCTGACAT+TGG | + | chr8_2:17756785-17756804 | None:intergenic | 25.0% |
| ! | ATGAAAGGAAATTTAGAAGT+AGG | + | chr8_2:17756924-17756943 | None:intergenic | 25.0% |
| AGCAAGAAAGAAGAAGTTTA+AGG | + | chr8_2:17752626-17752645 | None:intergenic | 30.0% | |
| CTTTGATTAAGTGCTTATGT+TGG | - | chr8_2:17753194-17753213 | Msa1238030:intron | 30.0% | |
| TTTGATCAAATTGAAGAGTG+TGG | - | chr8_2:17753290-17753309 | Msa1238030:intron | 30.0% | |
| GCTCTCAATTCTTAAGAAAA+TGG | - | chr8_2:17753332-17753351 | Msa1238030:intron | 30.0% | |
| ! | GAAGATATGAACAAAGCATT+TGG | + | chr8_2:17753533-17753552 | None:intergenic | 30.0% |
| TGATGTGACATGTAAATATG+GGG | - | chr8_2:17753612-17753631 | Msa1238030:intron | 30.0% | |
| AAAGGTCTAACCATGAAATT+TGG | - | chr8_2:17753760-17753779 | Msa1238030:intron | 30.0% | |
| ! | ACCATGAAATTTGGTTCAAA+TGG | - | chr8_2:17753769-17753788 | Msa1238030:intron | 30.0% |
| ACCATTTGAACCAAATTTCA+TGG | + | chr8_2:17753773-17753792 | None:intergenic | 30.0% | |
| GTTTAAGCCTAAATTGTTTC+AGG | + | chr8_2:17753845-17753864 | None:intergenic | 30.0% | |
| ! | TAGTGTAAGGTACCTTTATT+GGG | + | chr8_2:17754489-17754508 | None:intergenic | 30.0% |
| AAACATTTATCATGTCTCAC+TGG | - | chr8_2:17754716-17754735 | Msa1238030:intron | 30.0% | |
| ATATTGCTCTTGCAGAAATT+GGG | - | chr8_2:17755235-17755254 | Msa1238030:intron | 30.0% | |
| GAAAAGGTTATCTAATGTGA+AGG | - | chr8_2:17755263-17755282 | Msa1238030:intron | 30.0% | |
| TTCTTACTTATTCTCTGCTT+TGG | + | chr8_2:17755310-17755329 | None:intergenic | 30.0% | |
| ! | TTCGGAATATTGATAACATG+TGG | - | chr8_2:17755411-17755430 | Msa1238030:intron | 30.0% |
| ! | TCGGAATATTGATAACATGT+GGG | - | chr8_2:17755412-17755431 | Msa1238030:intron | 30.0% |
| AAAAGATGTGCTTATCTGTT+TGG | + | chr8_2:17755802-17755821 | None:intergenic | 30.0% | |
| ! | AAAGAGAAGATTTTATGCTG+TGG | - | chr8_2:17755834-17755853 | Msa1238030:intron | 30.0% |
| TCAACATTGTTAGTTGAGTT+AGG | + | chr8_2:17756135-17756154 | None:intergenic | 30.0% | |
| TAATACTGATATTGATAGGC+TGG | - | chr8_2:17756316-17756335 | Msa1238030:intron | 30.0% | |
| GAGAAAAAGAAAGCAGAATA+TGG | - | chr8_2:17756433-17756452 | Msa1238030:intron | 30.0% | |
| !! | CATCATATTAAAAGCATCCA+AGG | + | chr8_2:17756606-17756625 | None:intergenic | 30.0% |
| TGAGTGTAAAAGTTATGGAA+AGG | - | chr8_2:17756699-17756718 | Msa1238030:CDS | 30.0% | |
| GAGTGTAAAAGTTATGGAAA+GGG | - | chr8_2:17756700-17756719 | Msa1238030:CDS | 30.0% | |
| TATGGAAAGGGAAAATACAT+TGG | - | chr8_2:17756712-17756731 | Msa1238030:CDS | 30.0% | |
| TAGTGGAAAGAATCAATGAA+AGG | + | chr8_2:17756939-17756958 | None:intergenic | 30.0% | |
| TTGGTTGTGTAATAATGTAG+TGG | + | chr8_2:17756956-17756975 | None:intergenic | 30.0% | |
| AACAAAGAACTTGTGTTGTG+TGG | + | chr8_2:17752544-17752563 | None:intergenic | 35.0% | |
| ! | ACATTTTGTGTCTGAACCTA+TGG | - | chr8_2:17752655-17752674 | Msa1238030:three_prime_UTR | 35.0% |
| ! | TTTTCAACAACATTAACCGG+AGG | + | chr8_2:17752785-17752804 | None:intergenic | 35.0% |
| ! | TAATGAAAAGGCATGCCTAA+CGG | + | chr8_2:17753566-17753585 | None:intergenic | 35.0% |
| TGACATGTAAATATGGGGTA+GGG | - | chr8_2:17753617-17753636 | Msa1238030:intron | 35.0% | |
| TTTCTTTGCCTTGCAAAAGT+TGG | - | chr8_2:17753649-17753668 | Msa1238030:intron | 35.0% | |
| TTGTTTCAGGAATCAAACTC+AGG | + | chr8_2:17753832-17753851 | None:intergenic | 35.0% | |
| ! | CCAATGCATTTAAGGCATTT+CGG | + | chr8_2:17753899-17753918 | None:intergenic | 35.0% |
| TTGCTTATATTTGTGACCAG+AGG | - | chr8_2:17754113-17754132 | Msa1238030:intron | 35.0% | |
| TGCTTATATTTGTGACCAGA+GGG | - | chr8_2:17754114-17754133 | Msa1238030:intron | 35.0% | |
| TAAGTACGCTTAGATTTAGC+TGG | - | chr8_2:17754143-17754162 | Msa1238030:intron | 35.0% | |
| AAGTACGCTTAGATTTAGCT+GGG | - | chr8_2:17754144-17754163 | Msa1238030:intron | 35.0% | |
| GACCGAACTTTAGATTATTG+TGG | - | chr8_2:17754266-17754285 | Msa1238030:intron | 35.0% | |
| !! | TTATTGTGGTTTGTTTCCCT+TGG | - | chr8_2:17754280-17754299 | Msa1238030:intron | 35.0% |
| !! | TATTGTGGTTTGTTTCCCTT+GGG | - | chr8_2:17754281-17754300 | Msa1238030:intron | 35.0% |
| ! | TCTTAACATTTGGTTCCCAA+GGG | + | chr8_2:17754299-17754318 | None:intergenic | 35.0% |
| ! | AGTGTAAGGTACCTTTATTG+GGG | + | chr8_2:17754488-17754507 | None:intergenic | 35.0% |
| ! | CTAGTGTAAGGTACCTTTAT+TGG | + | chr8_2:17754490-17754509 | None:intergenic | 35.0% |
| AACTTTCACTCAACAAAGCT+TGG | - | chr8_2:17754518-17754537 | Msa1238030:intron | 35.0% | |
| !!! | GCATTCTTTTTTACAGGTTC+TGG | + | chr8_2:17754889-17754908 | None:intergenic | 35.0% |
| !!! | AGGGATGCATTCTTTTTTAC+AGG | + | chr8_2:17754895-17754914 | None:intergenic | 35.0% |
| ACAAGACTAACCTCTATCAA+GGG | + | chr8_2:17754914-17754933 | None:intergenic | 35.0% | |
| AACAAGACTAACCTCTATCA+AGG | + | chr8_2:17754915-17754934 | None:intergenic | 35.0% | |
| TCACAATTCTCTATCTTCCT+TGG | - | chr8_2:17755135-17755154 | Msa1238030:intron | 35.0% | |
| AGCACATATTCATGTTACCA+AGG | + | chr8_2:17755155-17755174 | None:intergenic | 35.0% | |
| GATATTGCTCTTGCAGAAAT+TGG | - | chr8_2:17755234-17755253 | Msa1238030:intron | 35.0% | |
| CAGAAATTGGGAAAGAGAAA+AGG | - | chr8_2:17755247-17755266 | Msa1238030:intron | 35.0% | |
| ! | GTTATCTAATGTGAAGGCAT+GGG | - | chr8_2:17755269-17755288 | Msa1238030:intron | 35.0% |
| AGCTCAACTCAGAAAAATTG+AGG | - | chr8_2:17755679-17755698 | Msa1238030:intron | 35.0% | |
| TTATGCTGTGGTACATTACA+TGG | - | chr8_2:17755846-17755865 | Msa1238030:intron | 35.0% | |
| TCAGCATTGTTAGTTGAGTT+AGG | + | chr8_2:17756286-17756305 | None:intergenic | 35.0% | |
| ! | TAAATTTTGAACACCTTGGC+AGG | - | chr8_2:17756402-17756421 | Msa1238030:intron | 35.0% |
| TGGTGAGAAAATCAAGAACA+AGG | - | chr8_2:17756453-17756472 | Msa1238030:intron | 35.0% | |
| TGAGAAAATCAAGAACAAGG+TGG | - | chr8_2:17756456-17756475 | Msa1238030:intron | 35.0% | |
| GTGTGTGAGTGTAAAAGTTA+TGG | - | chr8_2:17756694-17756713 | Msa1238030:CDS | 35.0% | |
| AATACATTGGAGGAACATGT+TGG | - | chr8_2:17756725-17756744 | Msa1238030:CDS | 35.0% | |
| TGTTGTTGAAAAGAAAGCGG+CGG | - | chr8_2:17752793-17752812 | Msa1238030:three_prime_UTR | 40.0% | |
| !! | CACAAAAGCACTTGTTGTTG+TGG | - | chr8_2:17752838-17752857 | Msa1238030:three_prime_UTR | 40.0% |
| TCTTCAATCAGTGATCCGTT+AGG | - | chr8_2:17753548-17753567 | Msa1238030:intron | 40.0% | |
| GTGACATGTAAATATGGGGT+AGG | - | chr8_2:17753616-17753635 | Msa1238030:intron | 40.0% | |
| ! | GAGTCAAACCAACTTTTGCA+AGG | + | chr8_2:17753660-17753679 | None:intergenic | 40.0% |
| ! | TAATCTAGAGTTCATCAGGG+AGG | + | chr8_2:17753876-17753895 | None:intergenic | 40.0% |
| ! | CGGTAATCTAGAGTTCATCA+GGG | + | chr8_2:17753879-17753898 | None:intergenic | 40.0% |
| ! | TCGGTAATCTAGAGTTCATC+AGG | + | chr8_2:17753880-17753899 | None:intergenic | 40.0% |
| CCGAAATGCCTTAAATGCAT+TGG | - | chr8_2:17753896-17753915 | Msa1238030:intron | 40.0% | |
| TCTTAACTAAGTACACCCTC+CGG | - | chr8_2:17753979-17753998 | Msa1238030:intron | 40.0% | |
| TGCTTATATTTGTGACCGGA+GGG | + | chr8_2:17753997-17754016 | None:intergenic | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | + | chr8_2:17753998-17754017 | None:intergenic | 40.0% | |
| ! | GTCTTAACATTTGGTTCCCA+AGG | + | chr8_2:17754300-17754319 | None:intergenic | 40.0% |
| !! | TTTGGGACCAGCTTGTTAAA+AGG | - | chr8_2:17754401-17754420 | Msa1238030:intron | 40.0% |
| ! | TCTCTCACCTTTTAACAAGC+TGG | + | chr8_2:17754411-17754430 | None:intergenic | 40.0% |
| ! | TGTAAGGTACCTTTATTGGG+GGG | + | chr8_2:17754486-17754505 | None:intergenic | 40.0% |
| ! | GTGTAAGGTACCTTTATTGG+GGG | + | chr8_2:17754487-17754506 | None:intergenic | 40.0% |
| ! | AAGGTACCTTACACTAGACT+TGG | - | chr8_2:17754493-17754512 | Msa1238030:intron | 40.0% |
| AGGTACCTTACACTAGACTT+GGG | - | chr8_2:17754494-17754513 | Msa1238030:intron | 40.0% | |
| AGTTTCCCAAGTCTAGTGTA+AGG | + | chr8_2:17754502-17754521 | None:intergenic | 40.0% | |
| ACCTGTCATTGCAACATAGT+GGG | + | chr8_2:17754648-17754667 | None:intergenic | 40.0% | |
| AAGAATGCATCCCTTGATAG+AGG | - | chr8_2:17754901-17754920 | Msa1238030:intron | 40.0% | |
| CACAGTGCTAATATATGCCT+AGG | - | chr8_2:17755102-17755121 | Msa1238030:intron | 40.0% | |
| ATTGTGACAGCAAGAAACCT+AGG | + | chr8_2:17755122-17755141 | None:intergenic | 40.0% | |
| TTGAGGAGTGGTTTCATAAG+AGG | + | chr8_2:17755192-17755211 | None:intergenic | 40.0% | |
| GGTTATCTAATGTGAAGGCA+TGG | - | chr8_2:17755268-17755287 | Msa1238030:intron | 40.0% | |
| AGATGTGCTTATCTGTTTGG+TGG | + | chr8_2:17755799-17755818 | None:intergenic | 40.0% | |
| AATCAAGAACAAGGTGGCAA+TGG | - | chr8_2:17756462-17756481 | Msa1238030:intron | 40.0% | |
| AATGGTTCACAAACAAGCAG+AGG | - | chr8_2:17756480-17756499 | Msa1238030:intron | 40.0% | |
| GCTGCAAAACATAATGCAAC+TGG | - | chr8_2:17756562-17756581 | Msa1238030:intron | 40.0% | |
| ACTGTTCCTAAGAAACTCCT+TGG | - | chr8_2:17756586-17756605 | Msa1238030:intron | 40.0% | |
| AAGCATCCAAGGAGTTTCTT+AGG | + | chr8_2:17756595-17756614 | None:intergenic | 40.0% | |
| GGAAAGGGAAAATACATTGG+AGG | - | chr8_2:17756715-17756734 | Msa1238030:CDS | 40.0% | |
| !! | TTGGTTTGGAGTTCAGCCAT+AGG | + | chr8_2:17752674-17752693 | None:intergenic | 45.0% |
| GCGTACTTAATTACACCCTC+TGG | + | chr8_2:17754132-17754151 | None:intergenic | 45.0% | |
| CCTTTATTGGGGGGGATTTA+TGG | + | chr8_2:17754477-17754496 | None:intergenic | 45.0% | |
| CCATAAATCCCCCCCAATAA+AGG | - | chr8_2:17754474-17754493 | Msa1238030:intron | 45.0% | |
| ! | GTAAGGTACCTTTATTGGGG+GGG | + | chr8_2:17754485-17754504 | None:intergenic | 45.0% |
| TCCCACTATGTTGCAATGAC+AGG | - | chr8_2:17754644-17754663 | Msa1238030:intron | 45.0% | |
| GACCTGTCATTGCAACATAG+TGG | + | chr8_2:17754649-17754668 | None:intergenic | 45.0% | |
| AAAGGACTAACGGCGAAACT+CGG | + | chr8_2:17756201-17756220 | None:intergenic | 45.0% | |
| AAAGGACTAACGGCGAAACT+CGG | + | chr8_2:17756201-17756220 | None:intergenic | 45.0% | |
| ACGTGCTGAAGCAATTCTCA+AGG | - | chr8_2:17756528-17756547 | Msa1238030:intron | 45.0% | |
| TGAAGCAATTCTCAAGGCAG+AGG | - | chr8_2:17756534-17756553 | Msa1238030:intron | 45.0% | |
| GAACATGTTGGACAGCAAAG+AGG | - | chr8_2:17756737-17756756 | Msa1238030:CDS | 45.0% | |
| TGGACAGCAAAGAGGATCTT+TGG | - | chr8_2:17756745-17756764 | Msa1238030:CDS | 45.0% | |
| GAGCTGCTTCTTGCTTGGTT+TGG | + | chr8_2:17752688-17752707 | None:intergenic | 50.0% | |
| TTTGTGTCATCTGCCACAGG+TGG | + | chr8_2:17752824-17752843 | None:intergenic | 50.0% | |
| ! | GCTTTTGTGTCATCTGCCAC+AGG | + | chr8_2:17752827-17752846 | None:intergenic | 50.0% |
| ATTGGGGGGGATTTATGGTG+AGG | + | chr8_2:17754472-17754491 | None:intergenic | 50.0% | |
| AGCTCTCTACTGTTGCTGCT+TGG | - | chr8_2:17755630-17755649 | Msa1238030:intron | 50.0% | |
| ! | GCTCTCTACTGTTGCTGCTT+GGG | - | chr8_2:17755631-17755650 | Msa1238030:intron | 50.0% |
| AACACCTTGGCAGGAGCAAT+TGG | - | chr8_2:17756411-17756430 | Msa1238030:intron | 50.0% | |
| TTCTCCAATTGCTCCTGCCA+AGG | + | chr8_2:17756418-17756437 | None:intergenic | 50.0% | |
| AGCAGGAGCTGCTTCTTGCT+TGG | + | chr8_2:17752693-17752712 | None:intergenic | 55.0% | |
| TAACGGCGAAACTCGGATGC+AGG | + | chr8_2:17756194-17756213 | None:intergenic | 55.0% | |
| TAACGGCGAAACTCGGATGC+AGG | + | chr8_2:17756194-17756213 | None:intergenic | 55.0% | |
| GCAGGAGCTGGAGTTGGAAC+CGG | + | chr8_2:17752734-17752753 | None:intergenic | 60.0% | |
| TCCAACTCCAGCTCCTGCTG+CGG | - | chr8_2:17752736-17752755 | Msa1238030:three_prime_UTR | 60.0% | |
| GGTTGAGCCACCTCTAGCTG+AGG | - | chr8_2:17752757-17752776 | Msa1238030:three_prime_UTR | 60.0% | |
| ACCTCTAGCTGAGGCTCCTC+CGG | - | chr8_2:17752766-17752785 | Msa1238030:three_prime_UTR | 60.0% | |
| GTGTCATCTGCCACAGGTGG+CGG | + | chr8_2:17752821-17752840 | None:intergenic | 60.0% | |
| AGCAGCTCCTGCTCCTGCTC+CGG | - | chr8_2:17752700-17752719 | Msa1238030:three_prime_UTR | 65.0% | |
| GCTGGAGTTGGAACCGGTGC+CGG | + | chr8_2:17752728-17752747 | None:intergenic | 65.0% | |
| ACCGCAGCAGGAGCTGGAGT+TGG | + | chr8_2:17752740-17752759 | None:intergenic | 65.0% | |
| AGAGGTGGCTCAACCGCAGC+AGG | + | chr8_2:17752752-17752771 | None:intergenic | 65.0% | |
| GGAGGAGCCTCAGCTAGAGG+TGG | + | chr8_2:17752767-17752786 | None:intergenic | 65.0% | |
| ACCGGAGGAGCCTCAGCTAG+AGG | + | chr8_2:17752770-17752789 | None:intergenic | 65.0% | |
| TCCTGCTCCTGCTCCGGCAC+CGG | - | chr8_2:17752706-17752725 | Msa1238030:three_prime_UTR | 70.0% | |
| !! | GTTGGAACCGGTGCCGGTGC+CGG | + | chr8_2:17752722-17752741 | None:intergenic | 70.0% |
| GGCTCAACCGCAGCAGGAGC+TGG | + | chr8_2:17752746-17752765 | None:intergenic | 70.0% | |
| !! | TCCTGCTCCGGCACCGGCAC+CGG | - | chr8_2:17752712-17752731 | Msa1238030:three_prime_UTR | 75.0% |
| !! | GCCGGTGCCGGAGCAGGAGC+AGG | + | chr8_2:17752710-17752729 | None:intergenic | 80.0% |
| !!! | ACCGGTGCCGGTGCCGGAGC+AGG | + | chr8_2:17752716-17752735 | None:intergenic | 80.0% |
| ! | AGCGGCGGCACCGCCACCTG+TGG | - | chr8_2:17752808-17752827 | Msa1238030:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 17752516 | 17756981 | 17752516 | ID=Msa1238030;Name=Msa1238030 |
| chr8_2 | mRNA | 17752516 | 17756981 | 17752516 | ID=Msa1238030-mRNA-1;Parent=Msa1238030;Name=Msa1238030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=158|1|1|1|1|1|5|363|200 |
| chr8_2 | exon | 17752516 | 17753073 | 17752516 | ID=Msa1238030-mRNA-1:exon:6779;Parent=Msa1238030-mRNA-1 |
| chr8_2 | exon | 17753797 | 17753878 | 17753797 | ID=Msa1238030-mRNA-1:exon:6778;Parent=Msa1238030-mRNA-1 |
| chr8_2 | exon | 17754175 | 17754262 | 17754175 | ID=Msa1238030-mRNA-1:exon:6777;Parent=Msa1238030-mRNA-1 |
| chr8_2 | exon | 17754575 | 17754616 | 17754575 | ID=Msa1238030-mRNA-1:exon:6776;Parent=Msa1238030-mRNA-1 |
| chr8_2 | exon | 17756628 | 17756981 | 17756628 | ID=Msa1238030-mRNA-1:exon:6775;Parent=Msa1238030-mRNA-1 |
| chr8_2 | five_prime_UTR | 17756824 | 17756981 | 17756824 | ID=Msa1238030-mRNA-1:five_prime_utr;Parent=Msa1238030-mRNA-1 |
| chr8_2 | CDS | 17756628 | 17756823 | 17756628 | ID=Msa1238030-mRNA-1:cds;Parent=Msa1238030-mRNA-1 |
| chr8_2 | CDS | 17754575 | 17754616 | 17754575 | ID=Msa1238030-mRNA-1:cds;Parent=Msa1238030-mRNA-1 |
| chr8_2 | CDS | 17754175 | 17754262 | 17754175 | ID=Msa1238030-mRNA-1:cds;Parent=Msa1238030-mRNA-1 |
| chr8_2 | CDS | 17753797 | 17753878 | 17753797 | ID=Msa1238030-mRNA-1:cds;Parent=Msa1238030-mRNA-1 |
| chr8_2 | CDS | 17752879 | 17753073 | 17752879 | ID=Msa1238030-mRNA-1:cds;Parent=Msa1238030-mRNA-1 |
| chr8_2 | three_prime_UTR | 17752516 | 17752878 | 17752516 | ID=Msa1238030-mRNA-1:three_prime_utr;Parent=Msa1238030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
