AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1318620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1318620 MtrunA17_Chr8g0349271 98.000 200 4 0 1 200 1 200 2.59e-134 374
Msa1318620 MtrunA17_Chr1g0203401 58.854 192 66 3 22 200 18 209 1.39e-60 188
Msa1318620 MtrunA17_Chr5g0397781 59.836 122 49 0 79 200 86 207 4.45e-44 145
Msa1318620 MtrunA17_Chr8g0386521 41.848 184 106 1 17 200 16 198 7.43e-41 137
Msa1318620 MtrunA17_Chr7g0247121 64.615 65 23 0 136 200 34 98 1.75e-26 97.4
Msa1318620 MtrunA17_Chr1g0173571 31.148 122 84 0 74 195 148 269 2.15e-12 64.3
Msa1318620 MtrunA17_Chr1g0153281 32.743 113 75 1 88 200 504 615 2.22e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1318620 AT3G61260.1 63.030 165 57 3 40 200 48 212 1.47e-63 196
Msa1318620 AT5G23750.2 52.195 205 89 4 1 200 1 201 2.35e-56 177
Msa1318620 AT3G48940.1 58.784 148 61 0 53 200 28 175 4.70e-56 176
Msa1318620 AT2G45820.1 56.585 205 69 6 1 200 1 190 1.83e-54 172
Msa1318620 AT5G23750.1 52.217 203 93 3 1 200 1 202 4.13e-54 171
Msa1318620 AT5G23750.3 52.217 203 93 3 1 200 28 229 9.83e-54 171
Msa1318620 AT1G63295.1 43.802 121 65 2 83 200 31 151 9.32e-23 89.7
Msa1318620 AT1G63295.2 43.802 121 65 2 83 200 71 191 1.77e-22 90.1
Msa1318620 AT4G00670.1 42.991 107 60 1 95 200 17 123 3.53e-22 87.4
Msa1318620 AT1G30320.1 37.037 108 64 1 97 200 401 508 1.19e-11 63.2

Find 65 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAGAAAGAAGAAGTTTA+AGG 0.152605 8_4:+20743054 None:intergenic
GATATTGCTCTTGCAGAAAT+AGG 0.169856 8_4:-20740183 Msa1318620:CDS
TATAGACAAAATTTCATAAT+TGG 0.216142 8_4:+20738735 None:intergenic
AAGCATCCAAGGAGTTTCTT+TGG 0.251656 8_4:+20738774 None:intergenic
TAATTACTATATAAAACTAT+TGG 0.275200 8_4:-20738559 Msa1318620:three_prime_UTR
TTCTTACTTATTCTCTGCTT+TGG 0.294744 8_4:+20740110 None:intergenic
TGGACAGCAAAGAGGATCTT+TGG 0.315757 8_4:-20738621 Msa1318620:three_prime_UTR
AATTACTATATAAAACTATT+GGG 0.341068 8_4:-20738558 Msa1318620:three_prime_UTR
GAACTGCTTCTTGCTTGGTT+TGG 0.343276 8_4:+20742992 None:intergenic
AACACTTTGGCAGGAGCAAT+TGG 0.362647 8_4:-20738955 Msa1318620:intron
GCTCTCTACTGTTGCTGCTT+GGG 0.383440 8_4:-20739779 Msa1318620:CDS
GGCTCAACCGCAGCAGGAGC+TGG 0.397851 8_4:+20742934 None:intergenic
AGCAGGAACTGCTTCTTGCT+TGG 0.401159 8_4:+20742987 None:intergenic
ACCGGTGCCGGTGCCGGAGC+AGG 0.401388 8_4:+20742964 None:intergenic
TCCTGCTCCGGCACCGGCAC+CGG 0.408876 8_4:-20742965 Msa1318620:CDS
ATGAAAGGAAATTTAGAAGT+AGG 0.417031 8_4:+20738445 None:intergenic
ATATTGCTCTTGCAGAAATA+GGG 0.422448 8_4:-20740182 Msa1318620:CDS
GCTGCAAAACATAATGCAAC+TGG 0.428407 8_4:-20738804 Msa1318620:CDS
ACAATGTATAGTTGGTAGAT+TGG 0.429592 8_4:+20738394 None:intergenic
GTTGGAACCGGTGCCGGTGC+CGG 0.434603 8_4:+20742958 None:intergenic
ACCTCTAGCTGAGGCTCCTC+CGG 0.444094 8_4:-20742911 Msa1318620:CDS
GTGTGTGAGTGTAAAAGTTA+TGG 0.444682 8_4:-20738672 Msa1318620:three_prime_UTR
AGAGGTGGCTCAACCGCAGC+AGG 0.447015 8_4:+20742928 None:intergenic
TCCTGCTCCTGCTCCGGCAC+CGG 0.451400 8_4:-20742971 Msa1318620:CDS
GCCGGTGCCGGAGCAGGAGC+AGG 0.453467 8_4:+20742970 None:intergenic
AGCTCTCTACTGTTGCTGCT+TGG 0.453757 8_4:-20739780 Msa1318620:CDS
GCAGGAGCTGGAGTTGGAAC+CGG 0.472694 8_4:+20742946 None:intergenic
CAGAAATAGGGAAAGAGAAA+AGG 0.476722 8_4:-20740170 Msa1318620:CDS
GCTGGAGTTGGAACCGGTGC+CGG 0.491097 8_4:+20742952 None:intergenic
ACTGTTCCAAAGAAACTCCT+TGG 0.501710 8_4:-20738780 Msa1318620:CDS
AGCAGTTCCTGCTCCTGCTC+CGG 0.505398 8_4:-20742977 Msa1318620:CDS
AACAAGACTAACCTCTATCA+AGG 0.505662 8_4:+20740727 None:intergenic
AAGAATGCATCCCTTGATAG+AGG 0.508900 8_4:-20740738 Msa1318620:intron
GGTTATCTAATGTGAAGGCA+TGG 0.509564 8_4:-20740149 Msa1318620:CDS
TTGGTTTGGAGTTCAGCCAT+AGG 0.510361 8_4:+20743006 None:intergenic
TATGGAAAGGGAAAATACAT+TGG 0.512674 8_4:-20738654 Msa1318620:three_prime_UTR
GTGTCATCTGCCACAGGTGG+CGG 0.529057 8_4:+20742859 None:intergenic
CATCATATTAAAAGCATCCA+AGG 0.533934 8_4:+20738763 None:intergenic
AATCAAGAACAAGGTGGCAA+TGG 0.536099 8_4:-20738904 Msa1318620:CDS
ACCGCAGCAGGAGCTGGAGT+TGG 0.536338 8_4:+20742940 None:intergenic
CACAAAAGCACTTGTTGTTG+TGG 0.554801 8_4:-20742839 Msa1318620:CDS
GTTATCTAATGTGAAGGCAT+GGG 0.574842 8_4:-20740148 Msa1318620:CDS
AGCGGCGGCACCGCCACCTG+TGG 0.575668 8_4:-20742869 Msa1318620:CDS
TCCAACTCCAGCTCCTGCTG+CGG 0.577619 8_4:-20742941 Msa1318620:CDS
GGAAAGGGAAAATACATTGG+AGG 0.579726 8_4:-20738651 Msa1318620:three_prime_UTR
GAAAAGGTTATCTAATGTGA+AGG 0.581637 8_4:-20740154 Msa1318620:CDS
GAGTGTAAAAGTTATGGAAA+GGG 0.581959 8_4:-20738666 Msa1318620:three_prime_UTR
TGAAGCAATTCTCAAGGCAG+AGG 0.599324 8_4:-20738832 Msa1318620:CDS
TAGTGGAAAGAATCAATGAA+AGG 0.599628 8_4:+20738430 None:intergenic
AATACATTGGAGGAACATGT+TGG 0.602186 8_4:-20738641 Msa1318620:three_prime_UTR
ACGTGCTGAAGCAATTCTCA+AGG 0.603219 8_4:-20738838 Msa1318620:CDS
ACCGGAGGAGCCTCAGCTAG+AGG 0.609180 8_4:+20742910 None:intergenic
TTGGTTGTGTAATAATGTAG+TGG 0.621475 8_4:+20738413 None:intergenic
ACAAGACTAACCTCTATCAA+GGG 0.621639 8_4:+20740728 None:intergenic
TGAGTGTAAAAGTTATGGAA+AGG 0.635435 8_4:-20738667 Msa1318620:three_prime_UTR
GGAGGAGCCTCAGCTAGAGG+TGG 0.640678 8_4:+20742913 None:intergenic
TGGTGAGAAAATCAAGAACA+AGG 0.641835 8_4:-20738913 Msa1318620:CDS
AACAAAGAACTTGTGTTGTG+TGG 0.650192 8_4:+20743136 None:intergenic
AATGGTTCACAAACAAGCAG+AGG 0.652178 8_4:-20738886 Msa1318620:CDS
TTTGTGTCATCTGCCACAGG+TGG 0.658313 8_4:+20742856 None:intergenic
TGTTGTTGAAAAGAAAGCGG+CGG 0.659083 8_4:-20742884 Msa1318620:CDS
GGTTGAGCCACCTCTAGCTG+AGG 0.662051 8_4:-20742920 Msa1318620:CDS
GAACATGTTGGACAGCAAAG+AGG 0.668064 8_4:-20738629 Msa1318620:three_prime_UTR
TAATGTTGTTGAAAAGAAAG+CGG 0.672280 8_4:-20742887 Msa1318620:CDS
TGAGAAAATCAAGAACAAGG+TGG 0.758003 8_4:-20738910 Msa1318620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATTTTTTTTTTTTTTGA+GGG + chr8_4:20740721-20740740 None:intergenic 10.0%
!!! ATACATTTTTTTTTTTTTTG+AGG + chr8_4:20740722-20740741 None:intergenic 10.0%
!! AAAAAAAAAAAACATATTTG+AGG + chr8_4:20741355-20741374 None:intergenic 10.0%
!!! AAATATGTTTTTTTTTTTTG+TGG - chr8_4:20741356-20741375 Msa1318620:intron 10.0%
!!! TAATTGCATAAAAATATTTT+AGG - chr8_4:20741533-20741552 Msa1318620:intron 10.0%
!!! AATTGCATAAAAATATTTTA+GGG - chr8_4:20741534-20741553 Msa1318620:intron 10.0%
!!! TATTATTATTGATTAAAAGA+TGG - chr8_4:20741902-20741921 Msa1318620:intron 10.0%
!! TAATTACTATATAAAACTAT+TGG - chr8_4:20743009-20743028 Msa1318620:exon 10.0%
!! AATTACTATATAAAACTATT+GGG - chr8_4:20743010-20743029 Msa1318620:exon 10.0%
!!! TTTTGAATGAAAAAATTGAA+GGG - chr8_4:20738867-20738886 Msa1318620:CDS 15.0%
!!! ATAATTCTGATATATGTTTT+TGG - chr8_4:20739281-20739300 Msa1318620:intron 15.0%
!!! TAATTCTGATATATGTTTTT+GGG - chr8_4:20739282-20739301 Msa1318620:intron 15.0%
!! AACCTAACTAAATATATAAA+AGG - chr8_4:20739635-20739654 Msa1318620:intron 15.0%
!!! TCGATAATAATTATACTTTT+TGG - chr8_4:20739820-20739839 Msa1318620:intron 15.0%
!!! ATAAGCAAAAATTCATATTT+TGG - chr8_4:20739903-20739922 Msa1318620:intron 15.0%
!!! AAGAAAATGTATAATTTTCT+AGG + chr8_4:20740261-20740280 None:intergenic 15.0%
!! TAATGAAAATCACTTTAATT+TGG + chr8_4:20740490-20740509 None:intergenic 15.0%
!!! AATATTTTGAAATCAGTTTA+AGG + chr8_4:20740516-20740535 None:intergenic 15.0%
!! GTTAATATCAAATATCAATA+AGG + chr8_4:20740900-20740919 None:intergenic 15.0%
!! TGTTTAATATCCTAAAATTT+AGG - chr8_4:20741732-20741751 Msa1318620:intron 15.0%
!! GTTTAATATCCTAAAATTTA+GGG - chr8_4:20741733-20741752 Msa1318620:intron 15.0%
!!! AAGATAAAGATAAGATTTTA+TGG - chr8_4:20742005-20742024 Msa1318620:intron 15.0%
!!! AATTAAATTTTTGAACACTT+TGG - chr8_4:20742600-20742619 Msa1318620:intron 15.0%
!! TATAGACAAAATTTCATAAT+TGG + chr8_4:20742836-20742855 None:intergenic 15.0%
!!! ATATTTTCTCTAAAGTATTA+AGG + chr8_4:20743065-20743084 None:intergenic 15.0%
!!! GAATTCCTTCTTTAATTTTT+TGG - chr8_4:20738771-20738790 Msa1318620:CDS 20.0%
!! AAAAGCCAAAAAATTAAAGA+AGG + chr8_4:20738779-20738798 None:intergenic 20.0%
!! TGTATCAATATTGTTTCATA+AGG - chr8_4:20738838-20738857 Msa1318620:CDS 20.0%
!!! GTTTTGAATGAAAAAATTGA+AGG - chr8_4:20738866-20738885 Msa1318620:CDS 20.0%
!! TTTGAATGAAAAAATTGAAG+GGG - chr8_4:20738868-20738887 Msa1318620:CDS 20.0%
!!! TTTGAGTTAATTTCAATTGT+TGG - chr8_4:20739006-20739025 Msa1318620:intron 20.0%
!!! TTATATATTTAGTTAGGTTG+AGG + chr8_4:20739634-20739653 None:intergenic 20.0%
!!! GACCTTTTATATATTTAGTT+AGG + chr8_4:20739640-20739659 None:intergenic 20.0%
!!! TATTTTGTTGTCTTAACATT+TGG + chr8_4:20740202-20740221 None:intergenic 20.0%
!!! TTCTTTAAAAAAAGCTACTT+TGG - chr8_4:20740276-20740295 Msa1318620:intron 20.0%
!!! TCTTTAAAAAAAGCTACTTT+GGG - chr8_4:20740277-20740296 Msa1318620:intron 20.0%
!! AATATTTCTCTCATATCATT+AGG - chr8_4:20740337-20740356 Msa1318620:intron 20.0%
!! ATAGAACAAGAAATGATTTA+AGG + chr8_4:20740441-20740460 None:intergenic 20.0%
!!! TAAATGATTCTTTGATTTGT+AGG - chr8_4:20740574-20740593 Msa1318620:intron 20.0%
!! TTCTTTATTGGATTCTAATT+AGG + chr8_4:20740673-20740692 None:intergenic 20.0%
!! AATTAGAATCCAATAAAGAA+AGG - chr8_4:20740673-20740692 Msa1318620:intron 20.0%
!!! TTTTTTTTTTTTGAGGGAAA+AGG + chr8_4:20740715-20740734 None:intergenic 20.0%
!!! TATCTTTACCATTTTTCTTT+TGG - chr8_4:20740780-20740799 Msa1318620:intron 20.0%
!!! AAATATTTTAGGGATCATTT+TGG - chr8_4:20741544-20741563 Msa1318620:intron 20.0%
!!! TTTTGAGTAAATGTCTAAAA+TGG + chr8_4:20741621-20741640 None:intergenic 20.0%
!!! ATTTTTGTGTTATCTTTACA+GGG - chr8_4:20741756-20741775 Msa1318620:intron 20.0%
!! ATAAAGAAGGATTCAATATA+TGG + chr8_4:20742222-20742241 None:intergenic 20.0%
!! AGCATAATTCTTTATAAAGA+AGG + chr8_4:20742235-20742254 None:intergenic 20.0%
!! ATTAGAAAAGAAACTCTAAA+TGG - chr8_4:20742263-20742282 Msa1318620:intron 20.0%
!! TTCTTTTCAACAACATTAAC+CGG + chr8_4:20738679-20738698 None:intergenic 25.0%
! TAATGTTGTTGAAAAGAAAG+CGG - chr8_4:20738681-20738700 Msa1318620:three_prime_UTR 25.0%
!!! TTTTTGGCTTTTAGAAATCA+TGG - chr8_4:20738787-20738806 Msa1318620:CDS 25.0%
!!! TTTTGGCTTTTAGAAATCAT+GGG - chr8_4:20738788-20738807 Msa1318620:CDS 25.0%
! GGTGAAAATTAATGAAAGTA+TGG - chr8_4:20738889-20738908 Msa1318620:CDS 25.0%
!!! ATTTGTTCATTGTTTTGTGA+AGG - chr8_4:20738979-20738998 Msa1318620:intron 25.0%
!!! AGAACCATTTTTGTATGAAT+TGG - chr8_4:20739339-20739358 Msa1318620:intron 25.0%
!!! GAACCATTTTTGTATGAATT+GGG - chr8_4:20739340-20739359 Msa1318620:intron 25.0%
! TTTCCCAATTCATACAAAAA+TGG + chr8_4:20739346-20739365 None:intergenic 25.0%
! ATTTGGAAAATTCATACAAG+AGG + chr8_4:20739409-20739428 None:intergenic 25.0%
!! TGCCTTTTCATTATTAGTTA+TGG - chr8_4:20739466-20739485 Msa1318620:intron 25.0%
! GACCATAACTAATAATGAAA+AGG + chr8_4:20739471-20739490 None:intergenic 25.0%
! TTCATTATTAGTTATGGTCT+TGG - chr8_4:20739472-20739491 Msa1318620:intron 25.0%
! TATGATGTGACATGTAAATA+TGG - chr8_4:20739503-20739522 Msa1318620:intron 25.0%
! ATGATGTGACATGTAAATAT+GGG - chr8_4:20739504-20739523 Msa1318620:intron 25.0%
! ACTGAACAATTCATTCTTAA+TGG + chr8_4:20739698-20739717 None:intergenic 25.0%
! TTTCTTAACCAATGCATTTA+AGG + chr8_4:20739800-20739819 None:intergenic 25.0%
! CTTAGTTAAGAATGTATGTA+TGG + chr8_4:20739863-20739882 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr8_4:20740003-20740022 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr8_4:20739929-20739948 None:intergenic 25.0%
!! AACCACAATAATCTAAAGTT+CGG + chr8_4:20740164-20740183 None:intergenic 25.0%
! TAAAAAAATGTATGCAAGCA+AGG + chr8_4:20740231-20740250 None:intergenic 25.0%
!!! AATCACTTTAATTTGGACAA+AGG + chr8_4:20740483-20740502 None:intergenic 25.0%
! AAACATTTATCATATCTCAC+TGG - chr8_4:20740609-20740628 Msa1318620:intron 25.0%
! TACATGATTCCTTTCTTTAT+TGG + chr8_4:20740685-20740704 None:intergenic 25.0%
!! GTCTAAGATAATTACATCAA+AGG + chr8_4:20740751-20740770 None:intergenic 25.0%
! TCTGTAAACCAAAAGAAAAA+TGG + chr8_4:20740791-20740810 None:intergenic 25.0%
!!! ATTTTTCTTTTGGTTTACAG+AGG - chr8_4:20740790-20740809 Msa1318620:intron 25.0%
!! TAAGTACTTGATAGAGTATT+TGG - chr8_4:20741004-20741023 Msa1318620:intron 25.0%
!! AAGTACTTGATAGAGTATTT+GGG - chr8_4:20741005-20741024 Msa1318620:intron 25.0%
!! ACTATTTTCATGTAAGCTAT+AGG + chr8_4:20741120-20741139 None:intergenic 25.0%
! AAAAAAACATATTTGAGGAG+AGG + chr8_4:20741350-20741369 None:intergenic 25.0%
!! TTTGGAATATTGATAACATG+AGG - chr8_4:20741562-20741581 Msa1318620:intron 25.0%
!! TTGGAATATTGATAACATGA+GGG - chr8_4:20741563-20741582 Msa1318620:intron 25.0%
!! CACAAAAATCCCTAAATTTT+AGG + chr8_4:20741745-20741764 None:intergenic 25.0%
!! GATTTTTGTGTTATCTTTAC+AGG - chr8_4:20741755-20741774 Msa1318620:intron 25.0%
! CTATAAATTGTGATGTATGT+TGG - chr8_4:20741930-20741949 Msa1318620:intron 25.0%
!! GATAATGCACATCTTTTTAA+AGG - chr8_4:20741964-20741983 Msa1318620:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr8_4:20742386-20742405 Msa1318620:intron 25.0%
!!! AAACTGTTCTAAGAGATTAA+TGG + chr8_4:20742563-20742582 None:intergenic 25.0%
!! AAGAAAACATTTTCTGACAT+TGG + chr8_4:20742987-20743006 None:intergenic 25.0%
! ATGAAAGGAAATTTAGAAGT+AGG + chr8_4:20743126-20743145 None:intergenic 25.0%
AGCAAGAAAGAAGAAGTTTA+AGG + chr8_4:20738517-20738536 None:intergenic 30.0%
CTTTGATTAAGTGCTTATGT+TGG - chr8_4:20739085-20739104 Msa1318620:intron 30.0%
TTTGATCAAATTGAAGAGTG+TGG - chr8_4:20739181-20739200 Msa1318620:intron 30.0%
GCTCTCAATTCTTAAGAAAA+TGG - chr8_4:20739223-20739242 Msa1318620:intron 30.0%
! GAAGATATGAACAAAGCATT+TGG + chr8_4:20739426-20739445 None:intergenic 30.0%
TGATGTGACATGTAAATATG+GGG - chr8_4:20739505-20739524 Msa1318620:intron 30.0%
AAAGGTCTAACCATGAAATT+TGG - chr8_4:20739653-20739672 Msa1318620:intron 30.0%
! ACCATGAAATTTGGTTCAAA+TGG - chr8_4:20739662-20739681 Msa1318620:intron 30.0%
ACCATTTGAACCAAATTTCA+TGG + chr8_4:20739666-20739685 None:intergenic 30.0%
TTTGATTCCTGGAACAATTT+AGG - chr8_4:20739728-20739747 Msa1318620:intron 30.0%
! TAGTGTAAGGTACCTTTATT+GGG + chr8_4:20740382-20740401 None:intergenic 30.0%
ACTTGTTTCATAACCATCAA+AGG - chr8_4:20740943-20740962 Msa1318620:intron 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr8_4:20740979-20740998 Msa1318620:intron 30.0%
! ACTTTATTTCCAAAAACTCG+AGG - chr8_4:20741077-20741096 Msa1318620:intron 30.0%
! ATAAGTTATCCTCGAGTTTT+TGG + chr8_4:20741089-20741108 None:intergenic 30.0%
ATATTGCTCTTGCAGAAATA+GGG - chr8_4:20741386-20741405 Msa1318620:intron 30.0%
GAAAAGGTTATCTAATGTGA+AGG - chr8_4:20741414-20741433 Msa1318620:intron 30.0%
TTCTTACTTATTCTCTGCTT+TGG + chr8_4:20741461-20741480 None:intergenic 30.0%
! TGATACTTTAAGAGTCTGTT+TGG + chr8_4:20741691-20741710 None:intergenic 30.0%
AGCTCAACTAAGAAAAATTG+AGG - chr8_4:20741837-20741856 Msa1318620:intron 30.0%
AAAGATGTGCATTATCTGTT+TGG + chr8_4:20741960-20741979 None:intergenic 30.0%
TCATATTCTTACCAGACATT+TGG - chr8_4:20742133-20742152 Msa1318620:intron 30.0%
CAAGACAATAATTGGATTGA+AGG + chr8_4:20742161-20742180 None:intergenic 30.0%
GACAAAAGCAAGACAATAAT+TGG + chr8_4:20742169-20742188 None:intergenic 30.0%
! ATTCAATATATGGACTGCAT+AGG + chr8_4:20742212-20742231 None:intergenic 30.0%
CTGAAAACGCTAATATTGAT+AGG - chr8_4:20742513-20742532 Msa1318620:intron 30.0%
AAACGCTAATATTGATAGGT+CGG - chr8_4:20742517-20742536 Msa1318620:intron 30.0%
! AAATTTTTGAACACTTTGGC+AGG - chr8_4:20742604-20742623 Msa1318620:intron 30.0%
GAGAAAAAGAAAGCAGAATA+TGG - chr8_4:20742635-20742654 Msa1318620:intron 30.0%
!! CATCATATTAAAAGCATCCA+AGG + chr8_4:20742808-20742827 None:intergenic 30.0%
TGAGTGTAAAAGTTATGGAA+AGG - chr8_4:20742901-20742920 Msa1318620:CDS 30.0%
GAGTGTAAAAGTTATGGAAA+GGG - chr8_4:20742902-20742921 Msa1318620:CDS 30.0%
TATGGAAAGGGAAAATACAT+TGG - chr8_4:20742914-20742933 Msa1318620:CDS 30.0%
TAGTGGAAAGAATCAATGAA+AGG + chr8_4:20743141-20743160 None:intergenic 30.0%
TTGGTTGTGTAATAATGTAG+TGG + chr8_4:20743158-20743177 None:intergenic 30.0%
AACAAAGAACTTGTGTTGTG+TGG + chr8_4:20738435-20738454 None:intergenic 35.0%
! ACATTTTGTGTCTGAACCTA+TGG - chr8_4:20738546-20738565 Msa1318620:three_prime_UTR 35.0%
! TTTTCAACAACATTAACCGG+AGG + chr8_4:20738676-20738695 None:intergenic 35.0%
! TAATGAAAAGGCATGCCTAA+CGG + chr8_4:20739459-20739478 None:intergenic 35.0%
TGACATGTAAATATGGGGTA+GGG - chr8_4:20739510-20739529 Msa1318620:intron 35.0%
TTTCTTTGCCTTGCAAAAGT+TGG - chr8_4:20739542-20739561 Msa1318620:intron 35.0%
GTTTAAGCCTAAATTGTTCC+AGG + chr8_4:20739738-20739757 None:intergenic 35.0%
! CCAATGCATTTAAGGCATTT+CGG + chr8_4:20739792-20739811 None:intergenic 35.0%
TTGCTTATATTTGTGACCAG+AGG - chr8_4:20740006-20740025 Msa1318620:intron 35.0%
TGCTTATATTTGTGACCAGA+GGG - chr8_4:20740007-20740026 Msa1318620:intron 35.0%
TAAGTACGCTTAGATTTAGC+TGG - chr8_4:20740036-20740055 Msa1318620:intron 35.0%
AAGTACGCTTAGATTTAGCT+GGG - chr8_4:20740037-20740056 Msa1318620:intron 35.0%
GACCGAACTTTAGATTATTG+TGG - chr8_4:20740159-20740178 Msa1318620:CDS 35.0%
!! TTATTGTGGTTTGTTTCCCT+TGG - chr8_4:20740173-20740192 Msa1318620:CDS 35.0%
!! TATTGTGGTTTGTTTCCCTT+GGG - chr8_4:20740174-20740193 Msa1318620:CDS 35.0%
! TCTTAACATTTGGTTCCCAA+GGG + chr8_4:20740192-20740211 None:intergenic 35.0%
! AGTGTAAGGTACCTTTATTG+GGG + chr8_4:20740381-20740400 None:intergenic 35.0%
! CTAGTGTAAGGTACCTTTAT+TGG + chr8_4:20740383-20740402 None:intergenic 35.0%
!!! GCATTCTTTTTTACAGGTTC+TGG + chr8_4:20740818-20740837 None:intergenic 35.0%
!!! AGGGATGCATTCTTTTTTAC+AGG + chr8_4:20740824-20740843 None:intergenic 35.0%
ACAAGACTAACCTCTATCAA+GGG + chr8_4:20740843-20740862 None:intergenic 35.0%
AACAAGACTAACCTCTATCA+AGG + chr8_4:20740844-20740863 None:intergenic 35.0%
ATAACCATCAAAGGTCTATC+TGG - chr8_4:20740952-20740971 Msa1318620:intron 35.0%
TCACAATTCTCTATCTTCCT+TGG - chr8_4:20741281-20741300 Msa1318620:intron 35.0%
AGCACATATTCATGTTACCA+AGG + chr8_4:20741301-20741320 None:intergenic 35.0%
GATATTGCTCTTGCAGAAAT+AGG - chr8_4:20741385-20741404 Msa1318620:intron 35.0%
CAGAAATAGGGAAAGAGAAA+AGG - chr8_4:20741398-20741417 Msa1318620:intron 35.0%
! GTTATCTAATGTGAAGGCAT+GGG - chr8_4:20741420-20741439 Msa1318620:intron 35.0%
TATTAATGATGTCAGCGTGT+CGG + chr8_4:20742347-20742366 None:intergenic 35.0%
TCAACATTGTCAGTTGAGTT+AGG + chr8_4:20742487-20742506 None:intergenic 35.0%
AAGAGATTAATGGCGAAACT+CGG + chr8_4:20742553-20742572 None:intergenic 35.0%
TGGTGAGAAAATCAAGAACA+AGG - chr8_4:20742655-20742674 Msa1318620:intron 35.0%
TGAGAAAATCAAGAACAAGG+TGG - chr8_4:20742658-20742677 Msa1318620:intron 35.0%
GTGTGTGAGTGTAAAAGTTA+TGG - chr8_4:20742896-20742915 Msa1318620:CDS 35.0%
AATACATTGGAGGAACATGT+TGG - chr8_4:20742927-20742946 Msa1318620:CDS 35.0%
TGTTGTTGAAAAGAAAGCGG+CGG - chr8_4:20738684-20738703 Msa1318620:three_prime_UTR 40.0%
!! CACAAAAGCACTTGTTGTTG+TGG - chr8_4:20738729-20738748 Msa1318620:three_prime_UTR 40.0%
TCTTCAATCAGTGATCCGTT+AGG - chr8_4:20739441-20739460 Msa1318620:intron 40.0%
GTGACATGTAAATATGGGGT+AGG - chr8_4:20739509-20739528 Msa1318620:intron 40.0%
! GAGTCAAACCAACTTTTGCA+AGG + chr8_4:20739553-20739572 None:intergenic 40.0%
TTGTTCCAGGAATCAAACTC+AGG + chr8_4:20739725-20739744 None:intergenic 40.0%
! TAATCTAGAGTTCATCAGGG+AGG + chr8_4:20739769-20739788 None:intergenic 40.0%
! CGGTAATCTAGAGTTCATCA+GGG + chr8_4:20739772-20739791 None:intergenic 40.0%
! TCGGTAATCTAGAGTTCATC+AGG + chr8_4:20739773-20739792 None:intergenic 40.0%
CCGAAATGCCTTAAATGCAT+TGG - chr8_4:20739789-20739808 Msa1318620:CDS 40.0%
TCTTAACTAAGTACACCCTC+CGG - chr8_4:20739872-20739891 Msa1318620:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr8_4:20739890-20739909 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr8_4:20739891-20739910 None:intergenic 40.0%
! GTCTTAACATTTGGTTCCCA+AGG + chr8_4:20740193-20740212 None:intergenic 40.0%
!! TTTGGGACCAGCTTGTTAAA+AGG - chr8_4:20740294-20740313 Msa1318620:intron 40.0%
! TCTCTCACCTTTTAACAAGC+TGG + chr8_4:20740304-20740323 None:intergenic 40.0%
! TGTAAGGTACCTTTATTGGG+GGG + chr8_4:20740379-20740398 None:intergenic 40.0%
! GTGTAAGGTACCTTTATTGG+GGG + chr8_4:20740380-20740399 None:intergenic 40.0%
! AAGGTACCTTACACTAGACT+TGG - chr8_4:20740386-20740405 Msa1318620:intron 40.0%
AGGTACCTTACACTAGACTT+GGG - chr8_4:20740387-20740406 Msa1318620:intron 40.0%
AGTTTCCCAAGTCTAGTGTA+AGG + chr8_4:20740395-20740414 None:intergenic 40.0%
ACCTGTCATTGCAACATAGT+GGG + chr8_4:20740541-20740560 None:intergenic 40.0%
AAGAATGCATCCCTTGATAG+AGG - chr8_4:20740830-20740849 Msa1318620:intron 40.0%
CAATCCAGATAGACCTTTGA+TGG + chr8_4:20740959-20740978 None:intergenic 40.0%
CACAGTGCTAATATATGCCT+AGG - chr8_4:20741248-20741267 Msa1318620:intron 40.0%
ATTGTGACAGCAAGAAACCT+AGG + chr8_4:20741268-20741287 None:intergenic 40.0%
TTGAGGAGAGGTTTCATAAG+AGG + chr8_4:20741338-20741357 None:intergenic 40.0%
GGTTATCTAATGTGAAGGCA+TGG - chr8_4:20741419-20741438 Msa1318620:intron 40.0%
GATGTGCATTATCTGTTTGG+TGG + chr8_4:20741957-20741976 None:intergenic 40.0%
GATTGAAGGTTCCAAATGTC+TGG + chr8_4:20742147-20742166 None:intergenic 40.0%
GTTGAGTTAGGTATGAAGCA+CGG + chr8_4:20742475-20742494 None:intergenic 40.0%
AATCAAGAACAAGGTGGCAA+TGG - chr8_4:20742664-20742683 Msa1318620:intron 40.0%
AATGGTTCACAAACAAGCAG+AGG - chr8_4:20742682-20742701 Msa1318620:intron 40.0%
GCTGCAAAACATAATGCAAC+TGG - chr8_4:20742764-20742783 Msa1318620:intron 40.0%
ACTGTTCCAAAGAAACTCCT+TGG - chr8_4:20742788-20742807 Msa1318620:intron 40.0%
AAGCATCCAAGGAGTTTCTT+TGG + chr8_4:20742797-20742816 None:intergenic 40.0%
GGAAAGGGAAAATACATTGG+AGG - chr8_4:20742917-20742936 Msa1318620:CDS 40.0%
!! TTGGTTTGGAGTTCAGCCAT+AGG + chr8_4:20738565-20738584 None:intergenic 45.0%
GAACTGCTTCTTGCTTGGTT+TGG + chr8_4:20738579-20738598 None:intergenic 45.0%
TCGAACCTGAGTTTGATTCC+TGG - chr8_4:20739717-20739736 Msa1318620:intron 45.0%
GCGTACTTAATTACACCCTC+TGG + chr8_4:20740025-20740044 None:intergenic 45.0%
CCTTTATTGGGGGGGATTTA+TGG + chr8_4:20740370-20740389 None:intergenic 45.0%
CCATAAATCCCCCCCAATAA+AGG - chr8_4:20740367-20740386 Msa1318620:intron 45.0%
! GTAAGGTACCTTTATTGGGG+GGG + chr8_4:20740378-20740397 None:intergenic 45.0%
TCCCACTATGTTGCAATGAC+AGG - chr8_4:20740537-20740556 Msa1318620:intron 45.0%
GACCTGTCATTGCAACATAG+TGG + chr8_4:20740542-20740561 None:intergenic 45.0%
ACCTAACTCCCTATGAAGCA+CGG - chr8_4:20742294-20742313 Msa1318620:intron 45.0%
ACACGACACATGTCTGATAC+CGG - chr8_4:20742426-20742445 Msa1318620:intron 45.0%
TAATGGCGAAACTCGGATGA+AGG + chr8_4:20742546-20742565 None:intergenic 45.0%
AACACTTTGGCAGGAGCAAT+TGG - chr8_4:20742613-20742632 Msa1318620:intron 45.0%
ACGTGCTGAAGCAATTCTCA+AGG - chr8_4:20742730-20742749 Msa1318620:intron 45.0%
TGAAGCAATTCTCAAGGCAG+AGG - chr8_4:20742736-20742755 Msa1318620:intron 45.0%
GAACATGTTGGACAGCAAAG+AGG - chr8_4:20742939-20742958 Msa1318620:CDS 45.0%
TGGACAGCAAAGAGGATCTT+TGG - chr8_4:20742947-20742966 Msa1318620:CDS 45.0%
AGCAGGAACTGCTTCTTGCT+TGG + chr8_4:20738584-20738603 None:intergenic 50.0%
TTTGTGTCATCTGCCACAGG+TGG + chr8_4:20738715-20738734 None:intergenic 50.0%
! GCTTTTGTGTCATCTGCCAC+AGG + chr8_4:20738718-20738737 None:intergenic 50.0%
ATTGGGGGGGATTTATGGTG+AGG + chr8_4:20740365-20740384 None:intergenic 50.0%
AGCTCTCTACTGTTGCTGCT+TGG - chr8_4:20741788-20741807 Msa1318620:intron 50.0%
! GCTCTCTACTGTTGCTGCTT+GGG - chr8_4:20741789-20741808 Msa1318620:intron 50.0%
TCCGTGCTTCATAGGGAGTT+AGG + chr8_4:20742298-20742317 None:intergenic 50.0%
CTCCCTATGAAGCACGGATA+CGG - chr8_4:20742300-20742319 Msa1318620:intron 50.0%
GTCCGTATCCGTGCTTCATA+GGG + chr8_4:20742305-20742324 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr8_4:20742306-20742325 None:intergenic 50.0%
CACGACACATGTCTGATACC+GGG - chr8_4:20742427-20742446 Msa1318620:intron 50.0%
TCCTAGGATTAGGCGTGTCC+CGG + chr8_4:20742448-20742467 None:intergenic 55.0%
TATGAAGCACGGACGCTCCT+AGG + chr8_4:20742464-20742483 None:intergenic 55.0%
AGCAGTTCCTGCTCCTGCTC+CGG - chr8_4:20738591-20738610 Msa1318620:three_prime_UTR 60.0%
GCAGGAGCTGGAGTTGGAAC+CGG + chr8_4:20738625-20738644 None:intergenic 60.0%
TCCAACTCCAGCTCCTGCTG+CGG - chr8_4:20738627-20738646 Msa1318620:three_prime_UTR 60.0%
GGTTGAGCCACCTCTAGCTG+AGG - chr8_4:20738648-20738667 Msa1318620:three_prime_UTR 60.0%
ACCTCTAGCTGAGGCTCCTC+CGG - chr8_4:20738657-20738676 Msa1318620:three_prime_UTR 60.0%
GTGTCATCTGCCACAGGTGG+CGG + chr8_4:20738712-20738731 None:intergenic 60.0%
ACCGGGACACGCCTAATCCT+AGG - chr8_4:20742444-20742463 Msa1318620:intron 60.0%
GCACGGACGCTCCTAGGATT+AGG + chr8_4:20742458-20742477 None:intergenic 60.0%
GCTGGAGTTGGAACCGGTGC+CGG + chr8_4:20738619-20738638 None:intergenic 65.0%
ACCGCAGCAGGAGCTGGAGT+TGG + chr8_4:20738631-20738650 None:intergenic 65.0%
AGAGGTGGCTCAACCGCAGC+AGG + chr8_4:20738643-20738662 None:intergenic 65.0%
GGAGGAGCCTCAGCTAGAGG+TGG + chr8_4:20738658-20738677 None:intergenic 65.0%
ACCGGAGGAGCCTCAGCTAG+AGG + chr8_4:20738661-20738680 None:intergenic 65.0%
TCCTGCTCCTGCTCCGGCAC+CGG - chr8_4:20738597-20738616 Msa1318620:three_prime_UTR 70.0%
!! GTTGGAACCGGTGCCGGTGC+CGG + chr8_4:20738613-20738632 None:intergenic 70.0%
GGCTCAACCGCAGCAGGAGC+TGG + chr8_4:20738637-20738656 None:intergenic 70.0%
!! TCCTGCTCCGGCACCGGCAC+CGG - chr8_4:20738603-20738622 Msa1318620:three_prime_UTR 75.0%
!! GCCGGTGCCGGAGCAGGAGC+AGG + chr8_4:20738601-20738620 None:intergenic 80.0%
!!! ACCGGTGCCGGTGCCGGAGC+AGG + chr8_4:20738607-20738626 None:intergenic 80.0%
! AGCGGCGGCACCGCCACCTG+TGG - chr8_4:20738699-20738718 Msa1318620:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 20738407 20743183 20738407 ID=Msa1318620;Name=Msa1318620
chr8_4 mRNA 20738407 20743183 20738407 ID=Msa1318620-mRNA-1;Parent=Msa1318620;Name=Msa1318620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|1|1|5|363|200
chr8_4 exon 20738407 20738964 20738407 ID=Msa1318620-mRNA-1:exon:7621;Parent=Msa1318620-mRNA-1
chr8_4 exon 20739732 20739813 20739732 ID=Msa1318620-mRNA-1:exon:7620;Parent=Msa1318620-mRNA-1
chr8_4 exon 20740117 20740204 20740117 ID=Msa1318620-mRNA-1:exon:7619;Parent=Msa1318620-mRNA-1
chr8_4 exon 20740739 20740780 20740739 ID=Msa1318620-mRNA-1:exon:7618;Parent=Msa1318620-mRNA-1
chr8_4 exon 20742830 20743183 20742830 ID=Msa1318620-mRNA-1:exon:7617;Parent=Msa1318620-mRNA-1
chr8_4 five_prime_UTR 20743026 20743183 20743026 ID=Msa1318620-mRNA-1:five_prime_utr;Parent=Msa1318620-mRNA-1
chr8_4 CDS 20742830 20743025 20742830 ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1
chr8_4 CDS 20740739 20740780 20740739 ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1
chr8_4 CDS 20740117 20740204 20740117 ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1
chr8_4 CDS 20739732 20739813 20739732 ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1
chr8_4 CDS 20738770 20738964 20738770 ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1
chr8_4 three_prime_UTR 20738407 20738769 20738407 ID=Msa1318620-mRNA-1:three_prime_utr;Parent=Msa1318620-mRNA-1
Gene Sequence

>Msa1318620

ATGGCTGAACTCCAAACCAAGCAAGAAGCAGTTCCTGCTCCTGCTCCGGCACCGGCACCGGTTCCAACTCCAGCTCCTGCTGCGGTTGAGCCACCTCTAGCTGAGGCTCCTCCGGTTAATGTTGTTGAAAAGAAAGCGGCGGCACCGCCACCTGTGGCAGATGACACAAAAGCACTTGTTGTTGTGGATAATGAGAAGGCACCAGAACCTGTAAAAAAGAATGCATCCCTTGATAGAGATATTGCTCTTGCAGAAATAGGGAAAGAGAAAAGGTTATCTAATGTGAAGGCATGGGAAGACAGTCAAAAAACCAAAGCAGAGAATAAGGCACAAAAGCAGCTCTCTACTGTTGCTGCTTGGGAAAACAGCAAGAAAGCAGCTCTTGAAGCTCAACTAAGAAAAATTGAGGAGCAATTGGAGAAAAAGAAAGCAGAATATGGTGAGAAAATCAAGAACAAGGTGGCAATGGTTCACAAACAAGCAGAGGAGAAGAGAGCAATAGTTGAAGCTCAACGTGCTGAAGCAATTCTCAAGGCAGAGGAAATAGCTGCAAAACATAATGCAACTGGAACTGTTCCAAAGAAACTCCTTGGATGCTTTTAA

Protein sequence

>Msa1318620

MAELQTKQEAVPAPAPAPAPVPTPAPAAVEPPLAEAPPVNVVEKKAAAPPPVADDTKALVVVDNEKAPEPVKKNASLDRDIALAEIGKEKRLSNVKAWEDSQKTKAENKAQKQLSTVAAWENSKKAALEAQLRKIEEQLEKKKAEYGEKIKNKVAMVHKQAEEKRAIVEAQRAEAILKAEEIAAKHNATGTVPKKLLGCF*