Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318620 | AFK34355.1 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 2.41e-130 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318620 | sp|P93788|REMO_SOLTU | 57.820 | 211 | 65 | 6 | 1 | 200 | 1 | 198 | 6.17e-67 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318620 | I3S263 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 1.15e-130 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072170 | Msa1318620 | 0.834827 | 2.392512e-56 | -8.615850e-47 |
| Msa0077880 | Msa1318620 | 0.801078 | 1.067078e-48 | -8.615850e-47 |
| Msa0100800 | Msa1318620 | 0.822340 | 2.496407e-53 | -8.615850e-47 |
| Msa0119320 | Msa1318620 | 0.810735 | 9.942513e-51 | -8.615850e-47 |
| Msa0120540 | Msa1318620 | 0.831472 | 1.637331e-55 | -8.615850e-47 |
| Msa0606810 | Msa1318620 | 0.844333 | 8.069417e-59 | -8.615850e-47 |
| Msa0610090 | Msa1318620 | 0.803468 | 3.436298e-49 | -8.615850e-47 |
| Msa0615680 | Msa1318620 | 0.815907 | 7.266850e-52 | -8.615850e-47 |
| Msa0658480 | Msa1318620 | 0.811457 | 6.936308e-51 | -8.615850e-47 |
| Msa0664760 | Msa1318620 | 0.819450 | 1.153845e-52 | -8.615850e-47 |
| Msa0687230 | Msa1318620 | 0.803691 | 3.089317e-49 | -8.615850e-47 |
| Msa0730640 | Msa1318620 | 0.805217 | 1.484759e-49 | -8.615850e-47 |
| Msa0771090 | Msa1318620 | 0.807798 | 4.238190e-50 | -8.615850e-47 |
| Msa0181000 | Msa1318620 | 0.812093 | 5.042673e-51 | -8.615850e-47 |
| Msa0193540 | Msa1318620 | 0.805541 | 1.270045e-49 | -8.615850e-47 |
| Msa0198520 | Msa1318620 | 0.809059 | 2.281885e-50 | -8.615850e-47 |
| Msa0208000 | Msa1318620 | 0.826843 | 2.171231e-54 | -8.615850e-47 |
| Msa0229940 | Msa1318620 | 0.828754 | 7.540004e-55 | -8.615850e-47 |
| Msa1226610 | Msa1318620 | 0.827804 | 1.277569e-54 | -8.615850e-47 |
| Msa1238030 | Msa1318620 | 0.866584 | 2.561537e-65 | -8.615850e-47 |
| Msa1242640 | Msa1318620 | 0.832116 | 1.135795e-55 | -8.615850e-47 |
| Msa1262960 | Msa1318620 | 0.819477 | 1.137783e-52 | -8.615850e-47 |
| Msa1294960 | Msa1318620 | 0.806769 | 7.004474e-50 | -8.615850e-47 |
| Msa1297800 | Msa1318620 | 0.804201 | 2.420156e-49 | -8.615850e-47 |
| Msa1318620 | Msa1333970 | 0.863557 | 2.287040e-64 | -8.615850e-47 |
| Msa1318620 | Msa1364060 | 0.802932 | 4.437481e-49 | -8.615850e-47 |
| Msa1318620 | Msa1364160 | 0.824453 | 8.005726e-54 | -8.615850e-47 |
| Msa1318620 | Msa1432480 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
| Msa1318620 | Msa1449910 | 0.808232 | 3.426856e-50 | -8.615850e-47 |
| Msa0384670 | Msa1318620 | 0.808641 | 2.803443e-50 | -8.615850e-47 |
| Msa0436200 | Msa1318620 | 0.837544 | 4.882921e-57 | -8.615850e-47 |
| Msa0437510 | Msa1318620 | 0.810795 | 9.652665e-51 | -8.615850e-47 |
| Msa0478580 | Msa1318620 | 0.819405 | 1.181402e-52 | -8.615850e-47 |
| Msa1010460 | Msa1318620 | 0.816709 | 4.809250e-52 | -8.615850e-47 |
| Msa1071660 | Msa1318620 | 0.834846 | 2.366739e-56 | -8.615850e-47 |
| Msa1073400 | Msa1318620 | 0.802026 | 6.819788e-49 | -8.615850e-47 |
| Msa1089270 | Msa1318620 | 0.823675 | 1.219233e-53 | -8.615850e-47 |
| Msa1098720 | Msa1318620 | -0.800328 | 1.517343e-48 | -8.615850e-47 |
| Msa0265160 | Msa1318620 | 0.801035 | 1.088806e-48 | -8.615850e-47 |
| Msa0295000 | Msa1318620 | -0.804486 | 2.111282e-49 | -8.615850e-47 |
| Msa1113880 | Msa1318620 | 0.809818 | 1.567698e-50 | -8.615850e-47 |
| Msa1114040 | Msa1318620 | 0.834304 | 3.239097e-56 | -8.615850e-47 |
| Msa1118710 | Msa1318620 | 0.824671 | 7.115134e-54 | -8.615850e-47 |
| Msa1125790 | Msa1318620 | -0.807097 | 5.970948e-50 | -8.615850e-47 |
| Msa1158770 | Msa1318620 | 0.834068 | 3.711086e-56 | -8.615850e-47 |
| Msa1173900 | Msa1318620 | 0.880396 | 5.684038e-70 | -8.615850e-47 |
| Msa1178370 | Msa1318620 | 0.828350 | 9.441227e-55 | -8.615850e-47 |
| Msa1214320 | Msa1318620 | 0.814571 | 1.439397e-51 | -8.615850e-47 |
| Msa1223330 | Msa1318620 | 0.849310 | 3.510859e-60 | -8.615850e-47 |
| Msa0524590 | Msa1318620 | 0.811866 | 5.650118e-51 | -8.615850e-47 |
| Msa0578090 | Msa1318620 | 0.818555 | 1.843774e-52 | -8.615850e-47 |
| Msa0586850 | Msa1318620 | 0.813399 | 2.611034e-51 | -8.615850e-47 |
| Msa0599900 | Msa1318620 | 0.825162 | 5.447362e-54 | -8.615850e-47 |
| Msa0879850 | Msa1318620 | 0.801428 | 9.047718e-49 | -8.615850e-47 |
| Msa0899290 | Msa1318620 | 0.821871 | 3.206014e-53 | -8.615850e-47 |
| Msa0943270 | Msa1318620 | 0.809092 | 2.244667e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318620 | MtrunA17_Chr8g0349271 | 98.000 | 200 | 4 | 0 | 1 | 200 | 1 | 200 | 2.59e-134 | 374 |
| Msa1318620 | MtrunA17_Chr1g0203401 | 58.854 | 192 | 66 | 3 | 22 | 200 | 18 | 209 | 1.39e-60 | 188 |
| Msa1318620 | MtrunA17_Chr5g0397781 | 59.836 | 122 | 49 | 0 | 79 | 200 | 86 | 207 | 4.45e-44 | 145 |
| Msa1318620 | MtrunA17_Chr8g0386521 | 41.848 | 184 | 106 | 1 | 17 | 200 | 16 | 198 | 7.43e-41 | 137 |
| Msa1318620 | MtrunA17_Chr7g0247121 | 64.615 | 65 | 23 | 0 | 136 | 200 | 34 | 98 | 1.75e-26 | 97.4 |
| Msa1318620 | MtrunA17_Chr1g0173571 | 31.148 | 122 | 84 | 0 | 74 | 195 | 148 | 269 | 2.15e-12 | 64.3 |
| Msa1318620 | MtrunA17_Chr1g0153281 | 32.743 | 113 | 75 | 1 | 88 | 200 | 504 | 615 | 2.22e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318620 | AT3G61260.1 | 63.030 | 165 | 57 | 3 | 40 | 200 | 48 | 212 | 1.47e-63 | 196 |
| Msa1318620 | AT5G23750.2 | 52.195 | 205 | 89 | 4 | 1 | 200 | 1 | 201 | 2.35e-56 | 177 |
| Msa1318620 | AT3G48940.1 | 58.784 | 148 | 61 | 0 | 53 | 200 | 28 | 175 | 4.70e-56 | 176 |
| Msa1318620 | AT2G45820.1 | 56.585 | 205 | 69 | 6 | 1 | 200 | 1 | 190 | 1.83e-54 | 172 |
| Msa1318620 | AT5G23750.1 | 52.217 | 203 | 93 | 3 | 1 | 200 | 1 | 202 | 4.13e-54 | 171 |
| Msa1318620 | AT5G23750.3 | 52.217 | 203 | 93 | 3 | 1 | 200 | 28 | 229 | 9.83e-54 | 171 |
| Msa1318620 | AT1G63295.1 | 43.802 | 121 | 65 | 2 | 83 | 200 | 31 | 151 | 9.32e-23 | 89.7 |
| Msa1318620 | AT1G63295.2 | 43.802 | 121 | 65 | 2 | 83 | 200 | 71 | 191 | 1.77e-22 | 90.1 |
| Msa1318620 | AT4G00670.1 | 42.991 | 107 | 60 | 1 | 95 | 200 | 17 | 123 | 3.53e-22 | 87.4 |
| Msa1318620 | AT1G30320.1 | 37.037 | 108 | 64 | 1 | 97 | 200 | 401 | 508 | 1.19e-11 | 63.2 |
Find 65 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAGAAAGAAGAAGTTTA+AGG | 0.152605 | 8_4:+20743054 | None:intergenic |
| GATATTGCTCTTGCAGAAAT+AGG | 0.169856 | 8_4:-20740183 | Msa1318620:CDS |
| TATAGACAAAATTTCATAAT+TGG | 0.216142 | 8_4:+20738735 | None:intergenic |
| AAGCATCCAAGGAGTTTCTT+TGG | 0.251656 | 8_4:+20738774 | None:intergenic |
| TAATTACTATATAAAACTAT+TGG | 0.275200 | 8_4:-20738559 | Msa1318620:three_prime_UTR |
| TTCTTACTTATTCTCTGCTT+TGG | 0.294744 | 8_4:+20740110 | None:intergenic |
| TGGACAGCAAAGAGGATCTT+TGG | 0.315757 | 8_4:-20738621 | Msa1318620:three_prime_UTR |
| AATTACTATATAAAACTATT+GGG | 0.341068 | 8_4:-20738558 | Msa1318620:three_prime_UTR |
| GAACTGCTTCTTGCTTGGTT+TGG | 0.343276 | 8_4:+20742992 | None:intergenic |
| AACACTTTGGCAGGAGCAAT+TGG | 0.362647 | 8_4:-20738955 | Msa1318620:intron |
| GCTCTCTACTGTTGCTGCTT+GGG | 0.383440 | 8_4:-20739779 | Msa1318620:CDS |
| GGCTCAACCGCAGCAGGAGC+TGG | 0.397851 | 8_4:+20742934 | None:intergenic |
| AGCAGGAACTGCTTCTTGCT+TGG | 0.401159 | 8_4:+20742987 | None:intergenic |
| ACCGGTGCCGGTGCCGGAGC+AGG | 0.401388 | 8_4:+20742964 | None:intergenic |
| TCCTGCTCCGGCACCGGCAC+CGG | 0.408876 | 8_4:-20742965 | Msa1318620:CDS |
| ATGAAAGGAAATTTAGAAGT+AGG | 0.417031 | 8_4:+20738445 | None:intergenic |
| ATATTGCTCTTGCAGAAATA+GGG | 0.422448 | 8_4:-20740182 | Msa1318620:CDS |
| GCTGCAAAACATAATGCAAC+TGG | 0.428407 | 8_4:-20738804 | Msa1318620:CDS |
| ACAATGTATAGTTGGTAGAT+TGG | 0.429592 | 8_4:+20738394 | None:intergenic |
| GTTGGAACCGGTGCCGGTGC+CGG | 0.434603 | 8_4:+20742958 | None:intergenic |
| ACCTCTAGCTGAGGCTCCTC+CGG | 0.444094 | 8_4:-20742911 | Msa1318620:CDS |
| GTGTGTGAGTGTAAAAGTTA+TGG | 0.444682 | 8_4:-20738672 | Msa1318620:three_prime_UTR |
| AGAGGTGGCTCAACCGCAGC+AGG | 0.447015 | 8_4:+20742928 | None:intergenic |
| TCCTGCTCCTGCTCCGGCAC+CGG | 0.451400 | 8_4:-20742971 | Msa1318620:CDS |
| GCCGGTGCCGGAGCAGGAGC+AGG | 0.453467 | 8_4:+20742970 | None:intergenic |
| AGCTCTCTACTGTTGCTGCT+TGG | 0.453757 | 8_4:-20739780 | Msa1318620:CDS |
| GCAGGAGCTGGAGTTGGAAC+CGG | 0.472694 | 8_4:+20742946 | None:intergenic |
| CAGAAATAGGGAAAGAGAAA+AGG | 0.476722 | 8_4:-20740170 | Msa1318620:CDS |
| GCTGGAGTTGGAACCGGTGC+CGG | 0.491097 | 8_4:+20742952 | None:intergenic |
| ACTGTTCCAAAGAAACTCCT+TGG | 0.501710 | 8_4:-20738780 | Msa1318620:CDS |
| AGCAGTTCCTGCTCCTGCTC+CGG | 0.505398 | 8_4:-20742977 | Msa1318620:CDS |
| AACAAGACTAACCTCTATCA+AGG | 0.505662 | 8_4:+20740727 | None:intergenic |
| AAGAATGCATCCCTTGATAG+AGG | 0.508900 | 8_4:-20740738 | Msa1318620:intron |
| GGTTATCTAATGTGAAGGCA+TGG | 0.509564 | 8_4:-20740149 | Msa1318620:CDS |
| TTGGTTTGGAGTTCAGCCAT+AGG | 0.510361 | 8_4:+20743006 | None:intergenic |
| TATGGAAAGGGAAAATACAT+TGG | 0.512674 | 8_4:-20738654 | Msa1318620:three_prime_UTR |
| GTGTCATCTGCCACAGGTGG+CGG | 0.529057 | 8_4:+20742859 | None:intergenic |
| CATCATATTAAAAGCATCCA+AGG | 0.533934 | 8_4:+20738763 | None:intergenic |
| AATCAAGAACAAGGTGGCAA+TGG | 0.536099 | 8_4:-20738904 | Msa1318620:CDS |
| ACCGCAGCAGGAGCTGGAGT+TGG | 0.536338 | 8_4:+20742940 | None:intergenic |
| CACAAAAGCACTTGTTGTTG+TGG | 0.554801 | 8_4:-20742839 | Msa1318620:CDS |
| GTTATCTAATGTGAAGGCAT+GGG | 0.574842 | 8_4:-20740148 | Msa1318620:CDS |
| AGCGGCGGCACCGCCACCTG+TGG | 0.575668 | 8_4:-20742869 | Msa1318620:CDS |
| TCCAACTCCAGCTCCTGCTG+CGG | 0.577619 | 8_4:-20742941 | Msa1318620:CDS |
| GGAAAGGGAAAATACATTGG+AGG | 0.579726 | 8_4:-20738651 | Msa1318620:three_prime_UTR |
| GAAAAGGTTATCTAATGTGA+AGG | 0.581637 | 8_4:-20740154 | Msa1318620:CDS |
| GAGTGTAAAAGTTATGGAAA+GGG | 0.581959 | 8_4:-20738666 | Msa1318620:three_prime_UTR |
| TGAAGCAATTCTCAAGGCAG+AGG | 0.599324 | 8_4:-20738832 | Msa1318620:CDS |
| TAGTGGAAAGAATCAATGAA+AGG | 0.599628 | 8_4:+20738430 | None:intergenic |
| AATACATTGGAGGAACATGT+TGG | 0.602186 | 8_4:-20738641 | Msa1318620:three_prime_UTR |
| ACGTGCTGAAGCAATTCTCA+AGG | 0.603219 | 8_4:-20738838 | Msa1318620:CDS |
| ACCGGAGGAGCCTCAGCTAG+AGG | 0.609180 | 8_4:+20742910 | None:intergenic |
| TTGGTTGTGTAATAATGTAG+TGG | 0.621475 | 8_4:+20738413 | None:intergenic |
| ACAAGACTAACCTCTATCAA+GGG | 0.621639 | 8_4:+20740728 | None:intergenic |
| TGAGTGTAAAAGTTATGGAA+AGG | 0.635435 | 8_4:-20738667 | Msa1318620:three_prime_UTR |
| GGAGGAGCCTCAGCTAGAGG+TGG | 0.640678 | 8_4:+20742913 | None:intergenic |
| TGGTGAGAAAATCAAGAACA+AGG | 0.641835 | 8_4:-20738913 | Msa1318620:CDS |
| AACAAAGAACTTGTGTTGTG+TGG | 0.650192 | 8_4:+20743136 | None:intergenic |
| AATGGTTCACAAACAAGCAG+AGG | 0.652178 | 8_4:-20738886 | Msa1318620:CDS |
| TTTGTGTCATCTGCCACAGG+TGG | 0.658313 | 8_4:+20742856 | None:intergenic |
| TGTTGTTGAAAAGAAAGCGG+CGG | 0.659083 | 8_4:-20742884 | Msa1318620:CDS |
| GGTTGAGCCACCTCTAGCTG+AGG | 0.662051 | 8_4:-20742920 | Msa1318620:CDS |
| GAACATGTTGGACAGCAAAG+AGG | 0.668064 | 8_4:-20738629 | Msa1318620:three_prime_UTR |
| TAATGTTGTTGAAAAGAAAG+CGG | 0.672280 | 8_4:-20742887 | Msa1318620:CDS |
| TGAGAAAATCAAGAACAAGG+TGG | 0.758003 | 8_4:-20738910 | Msa1318620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTTTTTTTTTTTTTGA+GGG | + | chr8_4:20740721-20740740 | None:intergenic | 10.0% |
| !!! | ATACATTTTTTTTTTTTTTG+AGG | + | chr8_4:20740722-20740741 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACATATTTG+AGG | + | chr8_4:20741355-20741374 | None:intergenic | 10.0% |
| !!! | AAATATGTTTTTTTTTTTTG+TGG | - | chr8_4:20741356-20741375 | Msa1318620:intron | 10.0% |
| !!! | TAATTGCATAAAAATATTTT+AGG | - | chr8_4:20741533-20741552 | Msa1318620:intron | 10.0% |
| !!! | AATTGCATAAAAATATTTTA+GGG | - | chr8_4:20741534-20741553 | Msa1318620:intron | 10.0% |
| !!! | TATTATTATTGATTAAAAGA+TGG | - | chr8_4:20741902-20741921 | Msa1318620:intron | 10.0% |
| !! | TAATTACTATATAAAACTAT+TGG | - | chr8_4:20743009-20743028 | Msa1318620:exon | 10.0% |
| !! | AATTACTATATAAAACTATT+GGG | - | chr8_4:20743010-20743029 | Msa1318620:exon | 10.0% |
| !!! | TTTTGAATGAAAAAATTGAA+GGG | - | chr8_4:20738867-20738886 | Msa1318620:CDS | 15.0% |
| !!! | ATAATTCTGATATATGTTTT+TGG | - | chr8_4:20739281-20739300 | Msa1318620:intron | 15.0% |
| !!! | TAATTCTGATATATGTTTTT+GGG | - | chr8_4:20739282-20739301 | Msa1318620:intron | 15.0% |
| !! | AACCTAACTAAATATATAAA+AGG | - | chr8_4:20739635-20739654 | Msa1318620:intron | 15.0% |
| !!! | TCGATAATAATTATACTTTT+TGG | - | chr8_4:20739820-20739839 | Msa1318620:intron | 15.0% |
| !!! | ATAAGCAAAAATTCATATTT+TGG | - | chr8_4:20739903-20739922 | Msa1318620:intron | 15.0% |
| !!! | AAGAAAATGTATAATTTTCT+AGG | + | chr8_4:20740261-20740280 | None:intergenic | 15.0% |
| !! | TAATGAAAATCACTTTAATT+TGG | + | chr8_4:20740490-20740509 | None:intergenic | 15.0% |
| !!! | AATATTTTGAAATCAGTTTA+AGG | + | chr8_4:20740516-20740535 | None:intergenic | 15.0% |
| !! | GTTAATATCAAATATCAATA+AGG | + | chr8_4:20740900-20740919 | None:intergenic | 15.0% |
| !! | TGTTTAATATCCTAAAATTT+AGG | - | chr8_4:20741732-20741751 | Msa1318620:intron | 15.0% |
| !! | GTTTAATATCCTAAAATTTA+GGG | - | chr8_4:20741733-20741752 | Msa1318620:intron | 15.0% |
| !!! | AAGATAAAGATAAGATTTTA+TGG | - | chr8_4:20742005-20742024 | Msa1318620:intron | 15.0% |
| !!! | AATTAAATTTTTGAACACTT+TGG | - | chr8_4:20742600-20742619 | Msa1318620:intron | 15.0% |
| !! | TATAGACAAAATTTCATAAT+TGG | + | chr8_4:20742836-20742855 | None:intergenic | 15.0% |
| !!! | ATATTTTCTCTAAAGTATTA+AGG | + | chr8_4:20743065-20743084 | None:intergenic | 15.0% |
| !!! | GAATTCCTTCTTTAATTTTT+TGG | - | chr8_4:20738771-20738790 | Msa1318620:CDS | 20.0% |
| !! | AAAAGCCAAAAAATTAAAGA+AGG | + | chr8_4:20738779-20738798 | None:intergenic | 20.0% |
| !! | TGTATCAATATTGTTTCATA+AGG | - | chr8_4:20738838-20738857 | Msa1318620:CDS | 20.0% |
| !!! | GTTTTGAATGAAAAAATTGA+AGG | - | chr8_4:20738866-20738885 | Msa1318620:CDS | 20.0% |
| !! | TTTGAATGAAAAAATTGAAG+GGG | - | chr8_4:20738868-20738887 | Msa1318620:CDS | 20.0% |
| !!! | TTTGAGTTAATTTCAATTGT+TGG | - | chr8_4:20739006-20739025 | Msa1318620:intron | 20.0% |
| !!! | TTATATATTTAGTTAGGTTG+AGG | + | chr8_4:20739634-20739653 | None:intergenic | 20.0% |
| !!! | GACCTTTTATATATTTAGTT+AGG | + | chr8_4:20739640-20739659 | None:intergenic | 20.0% |
| !!! | TATTTTGTTGTCTTAACATT+TGG | + | chr8_4:20740202-20740221 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAAAAGCTACTT+TGG | - | chr8_4:20740276-20740295 | Msa1318620:intron | 20.0% |
| !!! | TCTTTAAAAAAAGCTACTTT+GGG | - | chr8_4:20740277-20740296 | Msa1318620:intron | 20.0% |
| !! | AATATTTCTCTCATATCATT+AGG | - | chr8_4:20740337-20740356 | Msa1318620:intron | 20.0% |
| !! | ATAGAACAAGAAATGATTTA+AGG | + | chr8_4:20740441-20740460 | None:intergenic | 20.0% |
| !!! | TAAATGATTCTTTGATTTGT+AGG | - | chr8_4:20740574-20740593 | Msa1318620:intron | 20.0% |
| !! | TTCTTTATTGGATTCTAATT+AGG | + | chr8_4:20740673-20740692 | None:intergenic | 20.0% |
| !! | AATTAGAATCCAATAAAGAA+AGG | - | chr8_4:20740673-20740692 | Msa1318620:intron | 20.0% |
| !!! | TTTTTTTTTTTTGAGGGAAA+AGG | + | chr8_4:20740715-20740734 | None:intergenic | 20.0% |
| !!! | TATCTTTACCATTTTTCTTT+TGG | - | chr8_4:20740780-20740799 | Msa1318620:intron | 20.0% |
| !!! | AAATATTTTAGGGATCATTT+TGG | - | chr8_4:20741544-20741563 | Msa1318620:intron | 20.0% |
| !!! | TTTTGAGTAAATGTCTAAAA+TGG | + | chr8_4:20741621-20741640 | None:intergenic | 20.0% |
| !!! | ATTTTTGTGTTATCTTTACA+GGG | - | chr8_4:20741756-20741775 | Msa1318620:intron | 20.0% |
| !! | ATAAAGAAGGATTCAATATA+TGG | + | chr8_4:20742222-20742241 | None:intergenic | 20.0% |
| !! | AGCATAATTCTTTATAAAGA+AGG | + | chr8_4:20742235-20742254 | None:intergenic | 20.0% |
| !! | ATTAGAAAAGAAACTCTAAA+TGG | - | chr8_4:20742263-20742282 | Msa1318620:intron | 20.0% |
| !! | TTCTTTTCAACAACATTAAC+CGG | + | chr8_4:20738679-20738698 | None:intergenic | 25.0% |
| ! | TAATGTTGTTGAAAAGAAAG+CGG | - | chr8_4:20738681-20738700 | Msa1318620:three_prime_UTR | 25.0% |
| !!! | TTTTTGGCTTTTAGAAATCA+TGG | - | chr8_4:20738787-20738806 | Msa1318620:CDS | 25.0% |
| !!! | TTTTGGCTTTTAGAAATCAT+GGG | - | chr8_4:20738788-20738807 | Msa1318620:CDS | 25.0% |
| ! | GGTGAAAATTAATGAAAGTA+TGG | - | chr8_4:20738889-20738908 | Msa1318620:CDS | 25.0% |
| !!! | ATTTGTTCATTGTTTTGTGA+AGG | - | chr8_4:20738979-20738998 | Msa1318620:intron | 25.0% |
| !!! | AGAACCATTTTTGTATGAAT+TGG | - | chr8_4:20739339-20739358 | Msa1318620:intron | 25.0% |
| !!! | GAACCATTTTTGTATGAATT+GGG | - | chr8_4:20739340-20739359 | Msa1318620:intron | 25.0% |
| ! | TTTCCCAATTCATACAAAAA+TGG | + | chr8_4:20739346-20739365 | None:intergenic | 25.0% |
| ! | ATTTGGAAAATTCATACAAG+AGG | + | chr8_4:20739409-20739428 | None:intergenic | 25.0% |
| !! | TGCCTTTTCATTATTAGTTA+TGG | - | chr8_4:20739466-20739485 | Msa1318620:intron | 25.0% |
| ! | GACCATAACTAATAATGAAA+AGG | + | chr8_4:20739471-20739490 | None:intergenic | 25.0% |
| ! | TTCATTATTAGTTATGGTCT+TGG | - | chr8_4:20739472-20739491 | Msa1318620:intron | 25.0% |
| ! | TATGATGTGACATGTAAATA+TGG | - | chr8_4:20739503-20739522 | Msa1318620:intron | 25.0% |
| ! | ATGATGTGACATGTAAATAT+GGG | - | chr8_4:20739504-20739523 | Msa1318620:intron | 25.0% |
| ! | ACTGAACAATTCATTCTTAA+TGG | + | chr8_4:20739698-20739717 | None:intergenic | 25.0% |
| ! | TTTCTTAACCAATGCATTTA+AGG | + | chr8_4:20739800-20739819 | None:intergenic | 25.0% |
| ! | CTTAGTTAAGAATGTATGTA+TGG | + | chr8_4:20739863-20739882 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | + | chr8_4:20740003-20740022 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr8_4:20739929-20739948 | None:intergenic | 25.0% |
| !! | AACCACAATAATCTAAAGTT+CGG | + | chr8_4:20740164-20740183 | None:intergenic | 25.0% |
| ! | TAAAAAAATGTATGCAAGCA+AGG | + | chr8_4:20740231-20740250 | None:intergenic | 25.0% |
| !!! | AATCACTTTAATTTGGACAA+AGG | + | chr8_4:20740483-20740502 | None:intergenic | 25.0% |
| ! | AAACATTTATCATATCTCAC+TGG | - | chr8_4:20740609-20740628 | Msa1318620:intron | 25.0% |
| ! | TACATGATTCCTTTCTTTAT+TGG | + | chr8_4:20740685-20740704 | None:intergenic | 25.0% |
| !! | GTCTAAGATAATTACATCAA+AGG | + | chr8_4:20740751-20740770 | None:intergenic | 25.0% |
| ! | TCTGTAAACCAAAAGAAAAA+TGG | + | chr8_4:20740791-20740810 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTTTGGTTTACAG+AGG | - | chr8_4:20740790-20740809 | Msa1318620:intron | 25.0% |
| !! | TAAGTACTTGATAGAGTATT+TGG | - | chr8_4:20741004-20741023 | Msa1318620:intron | 25.0% |
| !! | AAGTACTTGATAGAGTATTT+GGG | - | chr8_4:20741005-20741024 | Msa1318620:intron | 25.0% |
| !! | ACTATTTTCATGTAAGCTAT+AGG | + | chr8_4:20741120-20741139 | None:intergenic | 25.0% |
| ! | AAAAAAACATATTTGAGGAG+AGG | + | chr8_4:20741350-20741369 | None:intergenic | 25.0% |
| !! | TTTGGAATATTGATAACATG+AGG | - | chr8_4:20741562-20741581 | Msa1318620:intron | 25.0% |
| !! | TTGGAATATTGATAACATGA+GGG | - | chr8_4:20741563-20741582 | Msa1318620:intron | 25.0% |
| !! | CACAAAAATCCCTAAATTTT+AGG | + | chr8_4:20741745-20741764 | None:intergenic | 25.0% |
| !! | GATTTTTGTGTTATCTTTAC+AGG | - | chr8_4:20741755-20741774 | Msa1318620:intron | 25.0% |
| ! | CTATAAATTGTGATGTATGT+TGG | - | chr8_4:20741930-20741949 | Msa1318620:intron | 25.0% |
| !! | GATAATGCACATCTTTTTAA+AGG | - | chr8_4:20741964-20741983 | Msa1318620:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr8_4:20742386-20742405 | Msa1318620:intron | 25.0% |
| !!! | AAACTGTTCTAAGAGATTAA+TGG | + | chr8_4:20742563-20742582 | None:intergenic | 25.0% |
| !! | AAGAAAACATTTTCTGACAT+TGG | + | chr8_4:20742987-20743006 | None:intergenic | 25.0% |
| ! | ATGAAAGGAAATTTAGAAGT+AGG | + | chr8_4:20743126-20743145 | None:intergenic | 25.0% |
| AGCAAGAAAGAAGAAGTTTA+AGG | + | chr8_4:20738517-20738536 | None:intergenic | 30.0% | |
| CTTTGATTAAGTGCTTATGT+TGG | - | chr8_4:20739085-20739104 | Msa1318620:intron | 30.0% | |
| TTTGATCAAATTGAAGAGTG+TGG | - | chr8_4:20739181-20739200 | Msa1318620:intron | 30.0% | |
| GCTCTCAATTCTTAAGAAAA+TGG | - | chr8_4:20739223-20739242 | Msa1318620:intron | 30.0% | |
| ! | GAAGATATGAACAAAGCATT+TGG | + | chr8_4:20739426-20739445 | None:intergenic | 30.0% |
| TGATGTGACATGTAAATATG+GGG | - | chr8_4:20739505-20739524 | Msa1318620:intron | 30.0% | |
| AAAGGTCTAACCATGAAATT+TGG | - | chr8_4:20739653-20739672 | Msa1318620:intron | 30.0% | |
| ! | ACCATGAAATTTGGTTCAAA+TGG | - | chr8_4:20739662-20739681 | Msa1318620:intron | 30.0% |
| ACCATTTGAACCAAATTTCA+TGG | + | chr8_4:20739666-20739685 | None:intergenic | 30.0% | |
| TTTGATTCCTGGAACAATTT+AGG | - | chr8_4:20739728-20739747 | Msa1318620:intron | 30.0% | |
| ! | TAGTGTAAGGTACCTTTATT+GGG | + | chr8_4:20740382-20740401 | None:intergenic | 30.0% |
| ACTTGTTTCATAACCATCAA+AGG | - | chr8_4:20740943-20740962 | Msa1318620:intron | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr8_4:20740979-20740998 | Msa1318620:intron | 30.0% | |
| ! | ACTTTATTTCCAAAAACTCG+AGG | - | chr8_4:20741077-20741096 | Msa1318620:intron | 30.0% |
| ! | ATAAGTTATCCTCGAGTTTT+TGG | + | chr8_4:20741089-20741108 | None:intergenic | 30.0% |
| ATATTGCTCTTGCAGAAATA+GGG | - | chr8_4:20741386-20741405 | Msa1318620:intron | 30.0% | |
| GAAAAGGTTATCTAATGTGA+AGG | - | chr8_4:20741414-20741433 | Msa1318620:intron | 30.0% | |
| TTCTTACTTATTCTCTGCTT+TGG | + | chr8_4:20741461-20741480 | None:intergenic | 30.0% | |
| ! | TGATACTTTAAGAGTCTGTT+TGG | + | chr8_4:20741691-20741710 | None:intergenic | 30.0% |
| AGCTCAACTAAGAAAAATTG+AGG | - | chr8_4:20741837-20741856 | Msa1318620:intron | 30.0% | |
| AAAGATGTGCATTATCTGTT+TGG | + | chr8_4:20741960-20741979 | None:intergenic | 30.0% | |
| TCATATTCTTACCAGACATT+TGG | - | chr8_4:20742133-20742152 | Msa1318620:intron | 30.0% | |
| CAAGACAATAATTGGATTGA+AGG | + | chr8_4:20742161-20742180 | None:intergenic | 30.0% | |
| GACAAAAGCAAGACAATAAT+TGG | + | chr8_4:20742169-20742188 | None:intergenic | 30.0% | |
| ! | ATTCAATATATGGACTGCAT+AGG | + | chr8_4:20742212-20742231 | None:intergenic | 30.0% |
| CTGAAAACGCTAATATTGAT+AGG | - | chr8_4:20742513-20742532 | Msa1318620:intron | 30.0% | |
| AAACGCTAATATTGATAGGT+CGG | - | chr8_4:20742517-20742536 | Msa1318620:intron | 30.0% | |
| ! | AAATTTTTGAACACTTTGGC+AGG | - | chr8_4:20742604-20742623 | Msa1318620:intron | 30.0% |
| GAGAAAAAGAAAGCAGAATA+TGG | - | chr8_4:20742635-20742654 | Msa1318620:intron | 30.0% | |
| !! | CATCATATTAAAAGCATCCA+AGG | + | chr8_4:20742808-20742827 | None:intergenic | 30.0% |
| TGAGTGTAAAAGTTATGGAA+AGG | - | chr8_4:20742901-20742920 | Msa1318620:CDS | 30.0% | |
| GAGTGTAAAAGTTATGGAAA+GGG | - | chr8_4:20742902-20742921 | Msa1318620:CDS | 30.0% | |
| TATGGAAAGGGAAAATACAT+TGG | - | chr8_4:20742914-20742933 | Msa1318620:CDS | 30.0% | |
| TAGTGGAAAGAATCAATGAA+AGG | + | chr8_4:20743141-20743160 | None:intergenic | 30.0% | |
| TTGGTTGTGTAATAATGTAG+TGG | + | chr8_4:20743158-20743177 | None:intergenic | 30.0% | |
| AACAAAGAACTTGTGTTGTG+TGG | + | chr8_4:20738435-20738454 | None:intergenic | 35.0% | |
| ! | ACATTTTGTGTCTGAACCTA+TGG | - | chr8_4:20738546-20738565 | Msa1318620:three_prime_UTR | 35.0% |
| ! | TTTTCAACAACATTAACCGG+AGG | + | chr8_4:20738676-20738695 | None:intergenic | 35.0% |
| ! | TAATGAAAAGGCATGCCTAA+CGG | + | chr8_4:20739459-20739478 | None:intergenic | 35.0% |
| TGACATGTAAATATGGGGTA+GGG | - | chr8_4:20739510-20739529 | Msa1318620:intron | 35.0% | |
| TTTCTTTGCCTTGCAAAAGT+TGG | - | chr8_4:20739542-20739561 | Msa1318620:intron | 35.0% | |
| GTTTAAGCCTAAATTGTTCC+AGG | + | chr8_4:20739738-20739757 | None:intergenic | 35.0% | |
| ! | CCAATGCATTTAAGGCATTT+CGG | + | chr8_4:20739792-20739811 | None:intergenic | 35.0% |
| TTGCTTATATTTGTGACCAG+AGG | - | chr8_4:20740006-20740025 | Msa1318620:intron | 35.0% | |
| TGCTTATATTTGTGACCAGA+GGG | - | chr8_4:20740007-20740026 | Msa1318620:intron | 35.0% | |
| TAAGTACGCTTAGATTTAGC+TGG | - | chr8_4:20740036-20740055 | Msa1318620:intron | 35.0% | |
| AAGTACGCTTAGATTTAGCT+GGG | - | chr8_4:20740037-20740056 | Msa1318620:intron | 35.0% | |
| GACCGAACTTTAGATTATTG+TGG | - | chr8_4:20740159-20740178 | Msa1318620:CDS | 35.0% | |
| !! | TTATTGTGGTTTGTTTCCCT+TGG | - | chr8_4:20740173-20740192 | Msa1318620:CDS | 35.0% |
| !! | TATTGTGGTTTGTTTCCCTT+GGG | - | chr8_4:20740174-20740193 | Msa1318620:CDS | 35.0% |
| ! | TCTTAACATTTGGTTCCCAA+GGG | + | chr8_4:20740192-20740211 | None:intergenic | 35.0% |
| ! | AGTGTAAGGTACCTTTATTG+GGG | + | chr8_4:20740381-20740400 | None:intergenic | 35.0% |
| ! | CTAGTGTAAGGTACCTTTAT+TGG | + | chr8_4:20740383-20740402 | None:intergenic | 35.0% |
| !!! | GCATTCTTTTTTACAGGTTC+TGG | + | chr8_4:20740818-20740837 | None:intergenic | 35.0% |
| !!! | AGGGATGCATTCTTTTTTAC+AGG | + | chr8_4:20740824-20740843 | None:intergenic | 35.0% |
| ACAAGACTAACCTCTATCAA+GGG | + | chr8_4:20740843-20740862 | None:intergenic | 35.0% | |
| AACAAGACTAACCTCTATCA+AGG | + | chr8_4:20740844-20740863 | None:intergenic | 35.0% | |
| ATAACCATCAAAGGTCTATC+TGG | - | chr8_4:20740952-20740971 | Msa1318620:intron | 35.0% | |
| TCACAATTCTCTATCTTCCT+TGG | - | chr8_4:20741281-20741300 | Msa1318620:intron | 35.0% | |
| AGCACATATTCATGTTACCA+AGG | + | chr8_4:20741301-20741320 | None:intergenic | 35.0% | |
| GATATTGCTCTTGCAGAAAT+AGG | - | chr8_4:20741385-20741404 | Msa1318620:intron | 35.0% | |
| CAGAAATAGGGAAAGAGAAA+AGG | - | chr8_4:20741398-20741417 | Msa1318620:intron | 35.0% | |
| ! | GTTATCTAATGTGAAGGCAT+GGG | - | chr8_4:20741420-20741439 | Msa1318620:intron | 35.0% |
| TATTAATGATGTCAGCGTGT+CGG | + | chr8_4:20742347-20742366 | None:intergenic | 35.0% | |
| TCAACATTGTCAGTTGAGTT+AGG | + | chr8_4:20742487-20742506 | None:intergenic | 35.0% | |
| AAGAGATTAATGGCGAAACT+CGG | + | chr8_4:20742553-20742572 | None:intergenic | 35.0% | |
| TGGTGAGAAAATCAAGAACA+AGG | - | chr8_4:20742655-20742674 | Msa1318620:intron | 35.0% | |
| TGAGAAAATCAAGAACAAGG+TGG | - | chr8_4:20742658-20742677 | Msa1318620:intron | 35.0% | |
| GTGTGTGAGTGTAAAAGTTA+TGG | - | chr8_4:20742896-20742915 | Msa1318620:CDS | 35.0% | |
| AATACATTGGAGGAACATGT+TGG | - | chr8_4:20742927-20742946 | Msa1318620:CDS | 35.0% | |
| TGTTGTTGAAAAGAAAGCGG+CGG | - | chr8_4:20738684-20738703 | Msa1318620:three_prime_UTR | 40.0% | |
| !! | CACAAAAGCACTTGTTGTTG+TGG | - | chr8_4:20738729-20738748 | Msa1318620:three_prime_UTR | 40.0% |
| TCTTCAATCAGTGATCCGTT+AGG | - | chr8_4:20739441-20739460 | Msa1318620:intron | 40.0% | |
| GTGACATGTAAATATGGGGT+AGG | - | chr8_4:20739509-20739528 | Msa1318620:intron | 40.0% | |
| ! | GAGTCAAACCAACTTTTGCA+AGG | + | chr8_4:20739553-20739572 | None:intergenic | 40.0% |
| TTGTTCCAGGAATCAAACTC+AGG | + | chr8_4:20739725-20739744 | None:intergenic | 40.0% | |
| ! | TAATCTAGAGTTCATCAGGG+AGG | + | chr8_4:20739769-20739788 | None:intergenic | 40.0% |
| ! | CGGTAATCTAGAGTTCATCA+GGG | + | chr8_4:20739772-20739791 | None:intergenic | 40.0% |
| ! | TCGGTAATCTAGAGTTCATC+AGG | + | chr8_4:20739773-20739792 | None:intergenic | 40.0% |
| CCGAAATGCCTTAAATGCAT+TGG | - | chr8_4:20739789-20739808 | Msa1318620:CDS | 40.0% | |
| TCTTAACTAAGTACACCCTC+CGG | - | chr8_4:20739872-20739891 | Msa1318620:intron | 40.0% | |
| TGCTTATATTTGTGACCGGA+GGG | + | chr8_4:20739890-20739909 | None:intergenic | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | + | chr8_4:20739891-20739910 | None:intergenic | 40.0% | |
| ! | GTCTTAACATTTGGTTCCCA+AGG | + | chr8_4:20740193-20740212 | None:intergenic | 40.0% |
| !! | TTTGGGACCAGCTTGTTAAA+AGG | - | chr8_4:20740294-20740313 | Msa1318620:intron | 40.0% |
| ! | TCTCTCACCTTTTAACAAGC+TGG | + | chr8_4:20740304-20740323 | None:intergenic | 40.0% |
| ! | TGTAAGGTACCTTTATTGGG+GGG | + | chr8_4:20740379-20740398 | None:intergenic | 40.0% |
| ! | GTGTAAGGTACCTTTATTGG+GGG | + | chr8_4:20740380-20740399 | None:intergenic | 40.0% |
| ! | AAGGTACCTTACACTAGACT+TGG | - | chr8_4:20740386-20740405 | Msa1318620:intron | 40.0% |
| AGGTACCTTACACTAGACTT+GGG | - | chr8_4:20740387-20740406 | Msa1318620:intron | 40.0% | |
| AGTTTCCCAAGTCTAGTGTA+AGG | + | chr8_4:20740395-20740414 | None:intergenic | 40.0% | |
| ACCTGTCATTGCAACATAGT+GGG | + | chr8_4:20740541-20740560 | None:intergenic | 40.0% | |
| AAGAATGCATCCCTTGATAG+AGG | - | chr8_4:20740830-20740849 | Msa1318620:intron | 40.0% | |
| CAATCCAGATAGACCTTTGA+TGG | + | chr8_4:20740959-20740978 | None:intergenic | 40.0% | |
| CACAGTGCTAATATATGCCT+AGG | - | chr8_4:20741248-20741267 | Msa1318620:intron | 40.0% | |
| ATTGTGACAGCAAGAAACCT+AGG | + | chr8_4:20741268-20741287 | None:intergenic | 40.0% | |
| TTGAGGAGAGGTTTCATAAG+AGG | + | chr8_4:20741338-20741357 | None:intergenic | 40.0% | |
| GGTTATCTAATGTGAAGGCA+TGG | - | chr8_4:20741419-20741438 | Msa1318620:intron | 40.0% | |
| GATGTGCATTATCTGTTTGG+TGG | + | chr8_4:20741957-20741976 | None:intergenic | 40.0% | |
| GATTGAAGGTTCCAAATGTC+TGG | + | chr8_4:20742147-20742166 | None:intergenic | 40.0% | |
| GTTGAGTTAGGTATGAAGCA+CGG | + | chr8_4:20742475-20742494 | None:intergenic | 40.0% | |
| AATCAAGAACAAGGTGGCAA+TGG | - | chr8_4:20742664-20742683 | Msa1318620:intron | 40.0% | |
| AATGGTTCACAAACAAGCAG+AGG | - | chr8_4:20742682-20742701 | Msa1318620:intron | 40.0% | |
| GCTGCAAAACATAATGCAAC+TGG | - | chr8_4:20742764-20742783 | Msa1318620:intron | 40.0% | |
| ACTGTTCCAAAGAAACTCCT+TGG | - | chr8_4:20742788-20742807 | Msa1318620:intron | 40.0% | |
| AAGCATCCAAGGAGTTTCTT+TGG | + | chr8_4:20742797-20742816 | None:intergenic | 40.0% | |
| GGAAAGGGAAAATACATTGG+AGG | - | chr8_4:20742917-20742936 | Msa1318620:CDS | 40.0% | |
| !! | TTGGTTTGGAGTTCAGCCAT+AGG | + | chr8_4:20738565-20738584 | None:intergenic | 45.0% |
| GAACTGCTTCTTGCTTGGTT+TGG | + | chr8_4:20738579-20738598 | None:intergenic | 45.0% | |
| TCGAACCTGAGTTTGATTCC+TGG | - | chr8_4:20739717-20739736 | Msa1318620:intron | 45.0% | |
| GCGTACTTAATTACACCCTC+TGG | + | chr8_4:20740025-20740044 | None:intergenic | 45.0% | |
| CCTTTATTGGGGGGGATTTA+TGG | + | chr8_4:20740370-20740389 | None:intergenic | 45.0% | |
| CCATAAATCCCCCCCAATAA+AGG | - | chr8_4:20740367-20740386 | Msa1318620:intron | 45.0% | |
| ! | GTAAGGTACCTTTATTGGGG+GGG | + | chr8_4:20740378-20740397 | None:intergenic | 45.0% |
| TCCCACTATGTTGCAATGAC+AGG | - | chr8_4:20740537-20740556 | Msa1318620:intron | 45.0% | |
| GACCTGTCATTGCAACATAG+TGG | + | chr8_4:20740542-20740561 | None:intergenic | 45.0% | |
| ACCTAACTCCCTATGAAGCA+CGG | - | chr8_4:20742294-20742313 | Msa1318620:intron | 45.0% | |
| ACACGACACATGTCTGATAC+CGG | - | chr8_4:20742426-20742445 | Msa1318620:intron | 45.0% | |
| TAATGGCGAAACTCGGATGA+AGG | + | chr8_4:20742546-20742565 | None:intergenic | 45.0% | |
| AACACTTTGGCAGGAGCAAT+TGG | - | chr8_4:20742613-20742632 | Msa1318620:intron | 45.0% | |
| ACGTGCTGAAGCAATTCTCA+AGG | - | chr8_4:20742730-20742749 | Msa1318620:intron | 45.0% | |
| TGAAGCAATTCTCAAGGCAG+AGG | - | chr8_4:20742736-20742755 | Msa1318620:intron | 45.0% | |
| GAACATGTTGGACAGCAAAG+AGG | - | chr8_4:20742939-20742958 | Msa1318620:CDS | 45.0% | |
| TGGACAGCAAAGAGGATCTT+TGG | - | chr8_4:20742947-20742966 | Msa1318620:CDS | 45.0% | |
| AGCAGGAACTGCTTCTTGCT+TGG | + | chr8_4:20738584-20738603 | None:intergenic | 50.0% | |
| TTTGTGTCATCTGCCACAGG+TGG | + | chr8_4:20738715-20738734 | None:intergenic | 50.0% | |
| ! | GCTTTTGTGTCATCTGCCAC+AGG | + | chr8_4:20738718-20738737 | None:intergenic | 50.0% |
| ATTGGGGGGGATTTATGGTG+AGG | + | chr8_4:20740365-20740384 | None:intergenic | 50.0% | |
| AGCTCTCTACTGTTGCTGCT+TGG | - | chr8_4:20741788-20741807 | Msa1318620:intron | 50.0% | |
| ! | GCTCTCTACTGTTGCTGCTT+GGG | - | chr8_4:20741789-20741808 | Msa1318620:intron | 50.0% |
| TCCGTGCTTCATAGGGAGTT+AGG | + | chr8_4:20742298-20742317 | None:intergenic | 50.0% | |
| CTCCCTATGAAGCACGGATA+CGG | - | chr8_4:20742300-20742319 | Msa1318620:intron | 50.0% | |
| GTCCGTATCCGTGCTTCATA+GGG | + | chr8_4:20742305-20742324 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | + | chr8_4:20742306-20742325 | None:intergenic | 50.0% | |
| CACGACACATGTCTGATACC+GGG | - | chr8_4:20742427-20742446 | Msa1318620:intron | 50.0% | |
| TCCTAGGATTAGGCGTGTCC+CGG | + | chr8_4:20742448-20742467 | None:intergenic | 55.0% | |
| TATGAAGCACGGACGCTCCT+AGG | + | chr8_4:20742464-20742483 | None:intergenic | 55.0% | |
| AGCAGTTCCTGCTCCTGCTC+CGG | - | chr8_4:20738591-20738610 | Msa1318620:three_prime_UTR | 60.0% | |
| GCAGGAGCTGGAGTTGGAAC+CGG | + | chr8_4:20738625-20738644 | None:intergenic | 60.0% | |
| TCCAACTCCAGCTCCTGCTG+CGG | - | chr8_4:20738627-20738646 | Msa1318620:three_prime_UTR | 60.0% | |
| GGTTGAGCCACCTCTAGCTG+AGG | - | chr8_4:20738648-20738667 | Msa1318620:three_prime_UTR | 60.0% | |
| ACCTCTAGCTGAGGCTCCTC+CGG | - | chr8_4:20738657-20738676 | Msa1318620:three_prime_UTR | 60.0% | |
| GTGTCATCTGCCACAGGTGG+CGG | + | chr8_4:20738712-20738731 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCT+AGG | - | chr8_4:20742444-20742463 | Msa1318620:intron | 60.0% | |
| GCACGGACGCTCCTAGGATT+AGG | + | chr8_4:20742458-20742477 | None:intergenic | 60.0% | |
| GCTGGAGTTGGAACCGGTGC+CGG | + | chr8_4:20738619-20738638 | None:intergenic | 65.0% | |
| ACCGCAGCAGGAGCTGGAGT+TGG | + | chr8_4:20738631-20738650 | None:intergenic | 65.0% | |
| AGAGGTGGCTCAACCGCAGC+AGG | + | chr8_4:20738643-20738662 | None:intergenic | 65.0% | |
| GGAGGAGCCTCAGCTAGAGG+TGG | + | chr8_4:20738658-20738677 | None:intergenic | 65.0% | |
| ACCGGAGGAGCCTCAGCTAG+AGG | + | chr8_4:20738661-20738680 | None:intergenic | 65.0% | |
| TCCTGCTCCTGCTCCGGCAC+CGG | - | chr8_4:20738597-20738616 | Msa1318620:three_prime_UTR | 70.0% | |
| !! | GTTGGAACCGGTGCCGGTGC+CGG | + | chr8_4:20738613-20738632 | None:intergenic | 70.0% |
| GGCTCAACCGCAGCAGGAGC+TGG | + | chr8_4:20738637-20738656 | None:intergenic | 70.0% | |
| !! | TCCTGCTCCGGCACCGGCAC+CGG | - | chr8_4:20738603-20738622 | Msa1318620:three_prime_UTR | 75.0% |
| !! | GCCGGTGCCGGAGCAGGAGC+AGG | + | chr8_4:20738601-20738620 | None:intergenic | 80.0% |
| !!! | ACCGGTGCCGGTGCCGGAGC+AGG | + | chr8_4:20738607-20738626 | None:intergenic | 80.0% |
| ! | AGCGGCGGCACCGCCACCTG+TGG | - | chr8_4:20738699-20738718 | Msa1318620:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 20738407 | 20743183 | 20738407 | ID=Msa1318620;Name=Msa1318620 |
| chr8_4 | mRNA | 20738407 | 20743183 | 20738407 | ID=Msa1318620-mRNA-1;Parent=Msa1318620;Name=Msa1318620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|1|1|5|363|200 |
| chr8_4 | exon | 20738407 | 20738964 | 20738407 | ID=Msa1318620-mRNA-1:exon:7621;Parent=Msa1318620-mRNA-1 |
| chr8_4 | exon | 20739732 | 20739813 | 20739732 | ID=Msa1318620-mRNA-1:exon:7620;Parent=Msa1318620-mRNA-1 |
| chr8_4 | exon | 20740117 | 20740204 | 20740117 | ID=Msa1318620-mRNA-1:exon:7619;Parent=Msa1318620-mRNA-1 |
| chr8_4 | exon | 20740739 | 20740780 | 20740739 | ID=Msa1318620-mRNA-1:exon:7618;Parent=Msa1318620-mRNA-1 |
| chr8_4 | exon | 20742830 | 20743183 | 20742830 | ID=Msa1318620-mRNA-1:exon:7617;Parent=Msa1318620-mRNA-1 |
| chr8_4 | five_prime_UTR | 20743026 | 20743183 | 20743026 | ID=Msa1318620-mRNA-1:five_prime_utr;Parent=Msa1318620-mRNA-1 |
| chr8_4 | CDS | 20742830 | 20743025 | 20742830 | ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1 |
| chr8_4 | CDS | 20740739 | 20740780 | 20740739 | ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1 |
| chr8_4 | CDS | 20740117 | 20740204 | 20740117 | ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1 |
| chr8_4 | CDS | 20739732 | 20739813 | 20739732 | ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1 |
| chr8_4 | CDS | 20738770 | 20738964 | 20738770 | ID=Msa1318620-mRNA-1:cds;Parent=Msa1318620-mRNA-1 |
| chr8_4 | three_prime_UTR | 20738407 | 20738769 | 20738407 | ID=Msa1318620-mRNA-1:three_prime_utr;Parent=Msa1318620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
