Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240460 | XP_013445082.1 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240460 | sp|Q9ZVJ6|ANXD4_ARATH | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 1.75e-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240460 | G7LF83 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1240460 | Msa1321050 | 0.823578 | 1.284206e-53 | -8.615850e-47 |
| Msa1186240 | Msa1240460 | 0.807906 | 4.020405e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240460 | MtrunA17_Chr8g0352581 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| Msa1240460 | MtrunA17_Chr5g0425971 | 39.432 | 317 | 165 | 6 | 4 | 311 | 14 | 312 | 1.52e-62 | 201 |
| Msa1240460 | MtrunA17_Chr8g0352621 | 38.801 | 317 | 167 | 8 | 5 | 312 | 13 | 311 | 2.36e-59 | 192 |
| Msa1240460 | MtrunA17_Chr8g0352571 | 36.957 | 322 | 173 | 8 | 4 | 313 | 14 | 317 | 1.26e-58 | 191 |
| Msa1240460 | MtrunA17_Chr3g0083901 | 37.224 | 317 | 172 | 8 | 5 | 312 | 14 | 312 | 9.54e-56 | 183 |
| Msa1240460 | MtrunA17_Chr2g0293441 | 36.593 | 317 | 172 | 7 | 5 | 311 | 14 | 311 | 6.83e-54 | 178 |
| Msa1240460 | MtrunA17_Chr3g0083921 | 35.962 | 317 | 176 | 7 | 5 | 312 | 14 | 312 | 2.00e-53 | 177 |
| Msa1240460 | MtrunA17_Chr8g0352611 | 37.421 | 318 | 171 | 8 | 4 | 312 | 13 | 311 | 1.19e-51 | 172 |
| Msa1240460 | MtrunA17_Chr8g0382281 | 35.535 | 318 | 178 | 6 | 4 | 312 | 14 | 313 | 5.84e-48 | 163 |
| Msa1240460 | MtrunA17_Chr8g0352591 | 35.220 | 318 | 168 | 9 | 5 | 313 | 14 | 302 | 2.68e-46 | 158 |
| Msa1240460 | MtrunA17_Chr6g0479411 | 31.392 | 309 | 189 | 7 | 10 | 311 | 47 | 339 | 1.56e-36 | 134 |
| Msa1240460 | MtrunA17_Chr8g0393281 | 30.645 | 310 | 190 | 6 | 10 | 311 | 20 | 312 | 8.47e-36 | 131 |
| Msa1240460 | MtrunA17_Chr1g0162071 | 28.931 | 318 | 195 | 7 | 5 | 311 | 15 | 312 | 1.61e-34 | 127 |
| Msa1240460 | MtrunA17_Chr6g0479421 | 31.392 | 309 | 189 | 6 | 10 | 311 | 20 | 312 | 5.08e-34 | 126 |
| Msa1240460 | MtrunA17_Chr6g0479391 | 29.773 | 309 | 194 | 6 | 10 | 311 | 20 | 312 | 2.24e-32 | 122 |
| Msa1240460 | MtrunA17_Chr1g0210981 | 29.450 | 309 | 195 | 6 | 10 | 311 | 20 | 312 | 7.37e-30 | 115 |
| Msa1240460 | MtrunA17_Chr6g0461141 | 26.174 | 298 | 201 | 6 | 24 | 312 | 23 | 310 | 1.52e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240460 | AT2G38750.1 | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 1.77e-128 | 369 |
| Msa1240460 | AT2G38750.2 | 59.333 | 300 | 118 | 3 | 16 | 312 | 2 | 300 | 1.84e-124 | 358 |
| Msa1240460 | AT1G35720.1 | 38.438 | 320 | 169 | 7 | 2 | 311 | 12 | 313 | 6.12e-62 | 199 |
| Msa1240460 | AT5G12380.1 | 37.421 | 318 | 172 | 6 | 5 | 313 | 14 | 313 | 6.20e-60 | 194 |
| Msa1240460 | AT5G10230.1 | 39.873 | 316 | 163 | 8 | 5 | 311 | 15 | 312 | 1.23e-57 | 188 |
| Msa1240460 | AT5G65020.1 | 38.095 | 315 | 169 | 6 | 8 | 313 | 18 | 315 | 1.92e-56 | 185 |
| Msa1240460 | AT5G10220.1 | 38.679 | 318 | 166 | 9 | 5 | 311 | 15 | 314 | 2.49e-54 | 180 |
| Msa1240460 | AT5G65020.2 | 37.338 | 308 | 167 | 6 | 15 | 313 | 10 | 300 | 1.34e-53 | 177 |
| Msa1240460 | AT2G38760.1 | 37.267 | 322 | 169 | 9 | 5 | 311 | 15 | 318 | 2.43e-52 | 175 |
| Msa1240460 | AT1G68090.1 | 30.351 | 313 | 192 | 8 | 8 | 311 | 18 | 313 | 2.93e-38 | 138 |
| Msa1240460 | AT1G68090.2 | 30.364 | 247 | 150 | 6 | 8 | 246 | 18 | 250 | 1.87e-27 | 107 |
Find 68 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAACAGTATTGGGAAAA+TGG | 0.175129 | 8_2:+22953388 | Msa1240460:CDS |
| GATCATTCCACCTTTGAAAT+TGG | 0.200455 | 8_2:-22953476 | None:intergenic |
| CTTGATTGAATGCCATATTC+TGG | 0.221716 | 8_2:-22953165 | None:intergenic |
| ATGAAATTGAGCCTTTCTTT+AGG | 0.253678 | 8_2:-22954989 | None:intergenic |
| GCTGAGTATAACAACTTATA+TGG | 0.300228 | 8_2:+22956424 | Msa1240460:CDS |
| TGAAATTGAGCCTTTCTTTA+GGG | 0.301910 | 8_2:-22954988 | None:intergenic |
| AAGCACTATAAAGAGATTTC+TGG | 0.312193 | 8_2:+22955946 | Msa1240460:CDS |
| GCTAGGATCTTAATGACTTA+AGG | 0.319355 | 8_2:+22956149 | Msa1240460:intron |
| CCTTGGAGAGAGAATCTTAT+AGG | 0.322567 | 8_2:+22953415 | Msa1240460:CDS |
| AATGGCATTGGAAAGTGTTT+TGG | 0.322849 | 8_2:-22955833 | None:intergenic |
| CTTTGTTCCTTCATATCTAT+AGG | 0.341085 | 8_2:-22955782 | None:intergenic |
| ATCAGAATGCAGTGGTGCTT+TGG | 0.364820 | 8_2:+22954922 | Msa1240460:intron |
| TTGAGGATGATGAAGTAATA+AGG | 0.375348 | 8_2:+22955881 | Msa1240460:CDS |
| AAGATCTTCAGAGGAACTAT+TGG | 0.382848 | 8_2:+22955040 | Msa1240460:CDS |
| TGCTTTGGAGCATGCACCCT+TGG | 0.391368 | 8_2:+22954937 | Msa1240460:CDS |
| CATTGATATGAAGGAGATAA+AGG | 0.391945 | 8_2:+22956402 | Msa1240460:CDS |
| TGATGAAGTAATAAGGATAT+TGG | 0.398287 | 8_2:+22955888 | Msa1240460:CDS |
| TTAATAAAAGAACAAACCTT+TGG | 0.402834 | 8_2:+22956541 | Msa1240460:three_prime_UTR |
| AAATCATTGATAACAGTATT+GGG | 0.403331 | 8_2:+22953381 | Msa1240460:CDS |
| ACTTCATCATCCTCAACAAT+TGG | 0.409615 | 8_2:-22955874 | None:intergenic |
| GAAATCATTGATAACAGTAT+TGG | 0.424006 | 8_2:+22953380 | Msa1240460:CDS |
| TTGAGCATTCTTAATGGCAT+TGG | 0.429639 | 8_2:-22955845 | None:intergenic |
| GCTTTAACTCAAGCTTTCTC+AGG | 0.434534 | 8_2:+22953196 | Msa1240460:CDS |
| TTGATTGAATGCCATATTCT+GGG | 0.439190 | 8_2:-22953164 | None:intergenic |
| GATAACAGTATTGGGAAAAT+GGG | 0.447759 | 8_2:+22953389 | Msa1240460:CDS |
| GTTTCGTTTATGAAATAAAG+AGG | 0.449646 | 8_2:+22956731 | Msa1240460:three_prime_UTR |
| AAGAAAGGCTCAATTTCATA+TGG | 0.467362 | 8_2:+22954993 | Msa1240460:CDS |
| CAGAGGAACTATTGGGTGCT+AGG | 0.480641 | 8_2:+22955048 | Msa1240460:CDS |
| GCAATTAAATATGATGAGTA+GGG | 0.483594 | 8_2:-22953109 | None:intergenic |
| AAAATTGAAGAGACTGCTAA+AGG | 0.486337 | 8_2:+22956463 | Msa1240460:CDS |
| AGATGCAACATCTTCTTCAA+TGG | 0.491454 | 8_2:-22955099 | None:intergenic |
| AGATCTTCAGAGGAACTATT+GGG | 0.497067 | 8_2:+22955041 | Msa1240460:CDS |
| TTAGCCTCCTCTAGCAATCA+AGG | 0.503479 | 8_2:-22956509 | None:intergenic |
| TAGAGCTGACATTGATATGA+AGG | 0.504202 | 8_2:+22956393 | Msa1240460:CDS |
| TGGAATGGTCAAAGAGAGAA+TGG | 0.508195 | 8_2:-22955079 | None:intergenic |
| GGAACTATTGGGTGCTAGGA+AGG | 0.509766 | 8_2:+22955052 | Msa1240460:CDS |
| AGATGCCCGTTTAGCAAAAG+AGG | 0.510170 | 8_2:+22954965 | Msa1240460:CDS |
| GCAAAAGAGGCCCTAAAGAA+AGG | 0.511238 | 8_2:+22954978 | Msa1240460:CDS |
| CATCCATGGCAATGATAGAA+AGG | 0.512366 | 8_2:+22955124 | Msa1240460:CDS |
| ATTGGGAAAATGGGATCCCT+TGG | 0.515294 | 8_2:+22953398 | Msa1240460:CDS |
| GCTTTGGAGCATGCACCCTT+GGG | 0.524661 | 8_2:+22954938 | Msa1240460:CDS |
| AAATTGAAGAGACTGCTAAA+GGG | 0.525725 | 8_2:+22956464 | Msa1240460:CDS |
| GTACCTTTCTATCATTGCCA+TGG | 0.525824 | 8_2:-22955127 | None:intergenic |
| GTGAGTGCCTATAGATATGA+AGG | 0.526990 | 8_2:+22955775 | Msa1240460:CDS |
| CAACATCTTCTTCAATGGAA+TGG | 0.529527 | 8_2:-22955094 | None:intergenic |
| AGCAATTAAATATGATGAGT+AGG | 0.529958 | 8_2:-22953110 | None:intergenic |
| TTGCTAACCTTGATTGCTAG+AGG | 0.531913 | 8_2:+22956502 | Msa1240460:CDS |
| CCTATAAGATTCTCTCTCCA+AGG | 0.548162 | 8_2:-22953415 | None:intergenic |
| AATATACTTGTGGAGTACAA+AGG | 0.574763 | 8_2:-22956192 | None:intergenic |
| TTGAATGCCATATTCTGGGA+AGG | 0.575664 | 8_2:-22953160 | None:intergenic |
| ATCATGAACGCCAATTTCAA+AGG | 0.576589 | 8_2:+22953466 | Msa1240460:CDS |
| AAACGGGCATCTCTTTCCCA+AGG | 0.580618 | 8_2:-22954954 | None:intergenic |
| GATGTTGCATCTCACATCCA+TGG | 0.585008 | 8_2:+22955110 | Msa1240460:CDS |
| ACCTTGCTAAAATATACTTG+TGG | 0.592183 | 8_2:-22956202 | None:intergenic |
| CTATAAGATTCTCTCTCCAA+GGG | 0.593207 | 8_2:-22953414 | None:intergenic |
| ATGAACGCCAATTTCAAAGG+TGG | 0.604776 | 8_2:+22953469 | Msa1240460:CDS |
| TTCTGGCAAGAATCTTGAAG+AGG | 0.605202 | 8_2:+22955963 | Msa1240460:CDS |
| GACTGCTAAAGGGAACTACA+AGG | 0.615438 | 8_2:+22956474 | Msa1240460:CDS |
| TCAAAAGAAGCCAATTGTTG+AGG | 0.621583 | 8_2:+22955864 | Msa1240460:CDS |
| TAAAATAAATCAGAATGCAG+TGG | 0.621993 | 8_2:+22954914 | Msa1240460:intron |
| AGATGAAACTGCAAAATCAG+AGG | 0.624947 | 8_2:+22955810 | Msa1240460:CDS |
| TGCAGCATTGAAAATTGATG+TGG | 0.633610 | 8_2:+22956330 | Msa1240460:CDS |
| CTAACCTTGATTGCTAGAGG+AGG | 0.643976 | 8_2:+22956505 | Msa1240460:CDS |
| TGCATGCACAAGATCTTCAG+AGG | 0.650638 | 8_2:+22955031 | Msa1240460:CDS |
| CTATAGATATGAAGGAACAA+AGG | 0.657119 | 8_2:+22955783 | Msa1240460:CDS |
| AACGGGCATCTCTTTCCCAA+GGG | 0.660396 | 8_2:-22954953 | None:intergenic |
| CAATTAAATATGATGAGTAG+GGG | 0.664709 | 8_2:-22953108 | None:intergenic |
| GTAACAATAATAACAACACA+AGG | 0.705703 | 8_2:-22956664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTAGTAATAATTTAATA+TGG | - | chr8_2:22953243-22953262 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTTTTTTAACAAT+CGG | + | chr8_2:22953927-22953946 | Msa1240460:intron | 10.0% |
| !! | AAAAATATAAAAGTTAAACA+TGG | - | chr8_2:22954077-22954096 | None:intergenic | 10.0% |
| !! | AATTTCATTAAAAAATATGA+AGG | + | chr8_2:22954294-22954313 | Msa1240460:intron | 10.0% |
| !! | AAAGAAAAACCAAAATAAAA+AGG | + | chr8_2:22953702-22953721 | Msa1240460:intron | 15.0% |
| !!! | GTTTTTTTTTTTTAACAATC+GGG | + | chr8_2:22953928-22953947 | Msa1240460:intron | 15.0% |
| !! | ATCAAATGTTAGTATATTTA+GGG | - | chr8_2:22953972-22953991 | None:intergenic | 15.0% |
| !! | AATCAAATGTTAGTATATTT+AGG | - | chr8_2:22953973-22953992 | None:intergenic | 15.0% |
| !!! | ATAGTCTAAAGAATATTTTA+GGG | - | chr8_2:22954003-22954022 | None:intergenic | 15.0% |
| !!! | AATAGTCTAAAGAATATTTT+AGG | - | chr8_2:22954004-22954023 | None:intergenic | 15.0% |
| !! | TAAAATATTCTTTAGACTAT+TGG | + | chr8_2:22954003-22954022 | Msa1240460:intron | 15.0% |
| !! | ATTTAATTGATGGAAAAATT+TGG | - | chr8_2:22954033-22954052 | None:intergenic | 15.0% |
| !! | AGGTTAATTAAATAAGTAAA+TGG | - | chr8_2:22954439-22954458 | None:intergenic | 15.0% |
| !! | AGAAAAACATAAAACATTAT+CGG | - | chr8_2:22955167-22955186 | None:intergenic | 15.0% |
| !!! | TTTTAATCTATCTAATATCA+TGG | + | chr8_2:22955186-22955205 | Msa1240460:intron | 15.0% |
| !!! | AATATCATGGTTTTAAATTA+TGG | + | chr8_2:22955199-22955218 | Msa1240460:intron | 15.0% |
| !! | CAAAGAAAAAAAAATTGAAT+CGG | - | chr8_2:22955250-22955269 | None:intergenic | 15.0% |
| !! | ATTTACAAAAGAGAATAAAT+TGG | + | chr8_2:22955272-22955291 | Msa1240460:intron | 15.0% |
| !!! | TTTTTTTTGTATATAGGTTT+TGG | + | chr8_2:22956306-22956325 | Msa1240460:intron | 15.0% |
| !! | TTCATCAAATATCATCAATT+GGG | - | chr8_2:22953325-22953344 | None:intergenic | 20.0% |
| !! | ATTCATCAAATATCATCAAT+TGG | - | chr8_2:22953326-22953345 | None:intergenic | 20.0% |
| !!! | GAATTAATGATGTAATTTTC+AGG | + | chr8_2:22953342-22953361 | Msa1240460:intron | 20.0% |
| !!! | AAATCATTGATAACAGTATT+GGG | + | chr8_2:22953381-22953400 | Msa1240460:CDS | 20.0% |
| !!! | AATTGAGAGATTGATTTTTA+CGG | + | chr8_2:22953575-22953594 | Msa1240460:intron | 20.0% |
| !!! | TCTTTTAATAGAAATGATGA+AGG | + | chr8_2:22953615-22953634 | Msa1240460:intron | 20.0% |
| !!! | AAAACATGTCCTTTTTATTT+TGG | - | chr8_2:22953714-22953733 | None:intergenic | 20.0% |
| !!! | AATAAAAAGGACATGTTTTT+TGG | + | chr8_2:22953715-22953734 | Msa1240460:intron | 20.0% |
| !!! | ATGTTTTTTGGTAGAAAAAA+AGG | + | chr8_2:22953727-22953746 | Msa1240460:intron | 20.0% |
| !!! | TAGTCTAAAGAATATTTTAG+GGG | - | chr8_2:22954002-22954021 | None:intergenic | 20.0% |
| !!! | TAATGAAATTTTCCAGAAAT+GGG | - | chr8_2:22954284-22954303 | None:intergenic | 20.0% |
| !!! | TTAATGAAATTTTCCAGAAA+TGG | - | chr8_2:22954285-22954304 | None:intergenic | 20.0% |
| !!! | AAAAGTAGAGACTAATTTTA+TGG | + | chr8_2:22954335-22954354 | Msa1240460:intron | 20.0% |
| !!! | TAAAATATTCTCTAGACTTT+TGG | - | chr8_2:22954380-22954399 | None:intergenic | 20.0% |
| !! | TCAAATATTGGTATATTTAG+CGG | + | chr8_2:22954412-22954431 | Msa1240460:intron | 20.0% |
| !! | ATATTTACATATCATTGTCT+AGG | - | chr8_2:22955598-22955617 | None:intergenic | 20.0% |
| !!! | AAAACAATTAGGTGTTATTA+GGG | - | chr8_2:22955731-22955750 | None:intergenic | 20.0% |
| !!! | AAAAACAATTAGGTGTTATT+AGG | - | chr8_2:22955732-22955751 | None:intergenic | 20.0% |
| !! | AATTTCATAAGTCATATGTT+TGG | - | chr8_2:22956095-22956114 | None:intergenic | 20.0% |
| !!! | TTTATTTATTACCTTTTGCT+AGG | + | chr8_2:22956132-22956151 | Msa1240460:intron | 20.0% |
| !! | TGTTATTATACAACAAAATG+AGG | - | chr8_2:22956250-22956269 | None:intergenic | 20.0% |
| !! | TTAATAAAAGAACAAACCTT+TGG | + | chr8_2:22956541-22956560 | Msa1240460:three_prime_UTR | 20.0% |
| ! | CAATTAAATATGATGAGTAG+GGG | - | chr8_2:22953111-22953130 | None:intergenic | 25.0% |
| ! | GCAATTAAATATGATGAGTA+GGG | - | chr8_2:22953112-22953131 | None:intergenic | 25.0% |
| ! | AGCAATTAAATATGATGAGT+AGG | - | chr8_2:22953113-22953132 | None:intergenic | 25.0% |
| !! | GAAATCATTGATAACAGTAT+TGG | + | chr8_2:22953380-22953399 | Msa1240460:CDS | 25.0% |
| !! | TTGAAGAATTCTTTTTGCTT+TGG | - | chr8_2:22953671-22953690 | None:intergenic | 25.0% |
| ! | AATCGGGTTAAATAAGTTAA+TGG | + | chr8_2:22953944-22953963 | Msa1240460:intron | 25.0% |
| !!! | AGTCTAAAGAATATTTTAGG+GGG | - | chr8_2:22954001-22954020 | None:intergenic | 25.0% |
| ! | TAATTGATGGAAAAATTTGG+AGG | - | chr8_2:22954030-22954049 | None:intergenic | 25.0% |
| ! | GTAGGTACTAATTTAATTGA+TGG | - | chr8_2:22954043-22954062 | None:intergenic | 25.0% |
| !! | TTAGTGAAATTTTCCAGAAA+TGG | + | chr8_2:22954096-22954115 | Msa1240460:intron | 25.0% |
| !! | TAGTGAAATTTTCCAGAAAT+GGG | + | chr8_2:22954097-22954116 | Msa1240460:intron | 25.0% |
| !!! | AGTCTAGAGAATATTTTAGA+AGG | + | chr8_2:22954382-22954401 | Msa1240460:intron | 25.0% |
| ! | GAAGGACTAAAATCAAATAT+TGG | + | chr8_2:22954400-22954419 | Msa1240460:intron | 25.0% |
| !! | GATTGACTTTGAATAAAACT+AGG | - | chr8_2:22954459-22954478 | None:intergenic | 25.0% |
| ! | ATAATAAAACGATCACAAGT+TGG | + | chr8_2:22954844-22954863 | Msa1240460:intron | 25.0% |
| ! | TAAAATAAATCAGAATGCAG+TGG | + | chr8_2:22954914-22954933 | Msa1240460:intron | 25.0% |
| ! | ATCAACCCAAAAATTAATGT+GGG | - | chr8_2:22955352-22955371 | None:intergenic | 25.0% |
| !! | CTAGACTAGAAATTTAACTT+TGG | + | chr8_2:22955376-22955395 | Msa1240460:intron | 25.0% |
| ! | GATTGTTACATGCAAAAAAA+TGG | - | chr8_2:22955478-22955497 | None:intergenic | 25.0% |
| !!! | ATAAGTGTTTTGAGAAATGT+TGG | + | chr8_2:22955505-22955524 | Msa1240460:intron | 25.0% |
| !! | AGCTGTTTCAAAAAACAATT+AGG | - | chr8_2:22955742-22955761 | None:intergenic | 25.0% |
| ! | TGATGAAGTAATAAGGATAT+TGG | + | chr8_2:22955888-22955907 | Msa1240460:CDS | 25.0% |
| ! | ATTATACAACAAAATGAGGT+TGG | - | chr8_2:22956246-22956265 | None:intergenic | 25.0% |
| !! | CATTTTCAAAACATTTCCAA+AGG | - | chr8_2:22956560-22956579 | None:intergenic | 25.0% |
| ! | GTAACAATAATAACAACACA+AGG | - | chr8_2:22956667-22956686 | None:intergenic | 25.0% |
| ! | GTTTCGTTTATGAAATAAAG+AGG | + | chr8_2:22956731-22956750 | Msa1240460:three_prime_UTR | 25.0% |
| TTGATTGAATGCCATATTCT+GGG | - | chr8_2:22953167-22953186 | None:intergenic | 30.0% | |
| !! | ATGATGTAATTTTCAGGACA+TGG | + | chr8_2:22953348-22953367 | Msa1240460:intron | 30.0% |
| !! | TGATGTAATTTTCAGGACAT+GGG | + | chr8_2:22953349-22953368 | Msa1240460:intron | 30.0% |
| ! | TGATAACAGTATTGGGAAAA+TGG | + | chr8_2:22953388-22953407 | Msa1240460:CDS | 30.0% |
| ! | GATAACAGTATTGGGAAAAT+GGG | + | chr8_2:22953389-22953408 | Msa1240460:CDS | 30.0% |
| AACATGGTTGACTAAATAGT+AGG | - | chr8_2:22954061-22954080 | None:intergenic | 30.0% | |
| ! | CATAATTTTCTACCCATTTC+TGG | - | chr8_2:22954112-22954131 | None:intergenic | 30.0% |
| CATAATATTCTACCCATTTC+TGG | + | chr8_2:22954269-22954288 | Msa1240460:intron | 30.0% | |
| ! | GTAGAGACTAATTTTATGGA+TGG | + | chr8_2:22954339-22954358 | Msa1240460:intron | 30.0% |
| TTATGGATGGAAAATTTCAG+AGG | + | chr8_2:22954352-22954371 | Msa1240460:intron | 30.0% | |
| TATGGATGGAAAATTTCAGA+GGG | + | chr8_2:22954353-22954372 | Msa1240460:intron | 30.0% | |
| GGATAATGCATAATTTATGC+AGG | - | chr8_2:22954574-22954593 | None:intergenic | 30.0% | |
| ATAAAAAAGTCAACACACGA+GGG | - | chr8_2:22954893-22954912 | None:intergenic | 30.0% | |
| TGAAATTGAGCCTTTCTTTA+GGG | - | chr8_2:22954991-22955010 | None:intergenic | 30.0% | |
| ATGAAATTGAGCCTTTCTTT+AGG | - | chr8_2:22954992-22955011 | None:intergenic | 30.0% | |
| AAGAAAGGCTCAATTTCATA+TGG | + | chr8_2:22954993-22955012 | Msa1240460:CDS | 30.0% | |
| !!! | ATGGTTTTAAATTATGGTCG+TGG | + | chr8_2:22955205-22955224 | Msa1240460:intron | 30.0% |
| GATCAACCCAAAAATTAATG+TGG | - | chr8_2:22955353-22955372 | None:intergenic | 30.0% | |
| !!! | CAAATCAAGTGTTTTGAGAA+AGG | - | chr8_2:22955422-22955441 | None:intergenic | 30.0% |
| CACATTTAAACTGTGTAATC+CGG | - | chr8_2:22955446-22955465 | None:intergenic | 30.0% | |
| ! | GGACATTTTCTATATACACT+TGG | - | chr8_2:22955572-22955591 | None:intergenic | 30.0% |
| TACATATCATTGTCTAGGTT+TGG | - | chr8_2:22955593-22955612 | None:intergenic | 30.0% | |
| TGTTAGATTTCTAAGCTTCT+AGG | + | chr8_2:22955643-22955662 | Msa1240460:intron | 30.0% | |
| !!! | TTGTTTTTTGAAACAGCTCT+TGG | + | chr8_2:22955744-22955763 | Msa1240460:intron | 30.0% |
| CTTTGTTCCTTCATATCTAT+AGG | - | chr8_2:22955785-22955804 | None:intergenic | 30.0% | |
| CTATAGATATGAAGGAACAA+AGG | + | chr8_2:22955783-22955802 | Msa1240460:CDS | 30.0% | |
| ! | CTTCTTTTGAGCATTCTTAA+TGG | - | chr8_2:22955854-22955873 | None:intergenic | 30.0% |
| TTGAGGATGATGAAGTAATA+AGG | + | chr8_2:22955881-22955900 | Msa1240460:CDS | 30.0% | |
| AAGCACTATAAAGAGATTTC+TGG | + | chr8_2:22955946-22955965 | Msa1240460:CDS | 30.0% | |
| AATATACTTGTGGAGTACAA+AGG | - | chr8_2:22956195-22956214 | None:intergenic | 30.0% | |
| !!! | TCCACAAGTATATTTTAGCA+AGG | + | chr8_2:22956201-22956220 | Msa1240460:CDS | 30.0% |
| ACCTTGCTAAAATATACTTG+TGG | - | chr8_2:22956205-22956224 | None:intergenic | 30.0% | |
| CATTGATATGAAGGAGATAA+AGG | + | chr8_2:22956402-22956421 | Msa1240460:CDS | 30.0% | |
| GCTGAGTATAACAACTTATA+TGG | + | chr8_2:22956424-22956443 | Msa1240460:CDS | 30.0% | |
| AAAATTGAAGAGACTGCTAA+AGG | + | chr8_2:22956463-22956482 | Msa1240460:CDS | 30.0% | |
| AAATTGAAGAGACTGCTAAA+GGG | + | chr8_2:22956464-22956483 | Msa1240460:CDS | 30.0% | |
| TCAAAAACCTTCCCAGAATA+TGG | + | chr8_2:22953153-22953172 | Msa1240460:exon | 35.0% | |
| CTTGATTGAATGCCATATTC+TGG | - | chr8_2:22953168-22953187 | None:intergenic | 35.0% | |
| !! | GATGTAATTTTCAGGACATG+GGG | + | chr8_2:22953350-22953369 | Msa1240460:intron | 35.0% |
| CTATAAGATTCTCTCTCCAA+GGG | - | chr8_2:22953417-22953436 | None:intergenic | 35.0% | |
| ATCATGAACGCCAATTTCAA+AGG | + | chr8_2:22953466-22953485 | Msa1240460:CDS | 35.0% | |
| !! | GATCATTCCACCTTTGAAAT+TGG | - | chr8_2:22953479-22953498 | None:intergenic | 35.0% |
| ! | ACATGAGTTTGTGCGTTTTA+AGG | + | chr8_2:22953518-22953537 | Msa1240460:CDS | 35.0% |
| ACTAGAGAAACTCACCTTAA+AGG | + | chr8_2:22954512-22954531 | Msa1240460:intron | 35.0% | |
| TGCATAATTTATGCAGGTGT+CGG | - | chr8_2:22954568-22954587 | None:intergenic | 35.0% | |
| CATAAAAAAGTCAACACACG+AGG | - | chr8_2:22954894-22954913 | None:intergenic | 35.0% | |
| AAGATCTTCAGAGGAACTAT+TGG | + | chr8_2:22955040-22955059 | Msa1240460:CDS | 35.0% | |
| AGATCTTCAGAGGAACTATT+GGG | + | chr8_2:22955041-22955060 | Msa1240460:CDS | 35.0% | |
| CAACATCTTCTTCAATGGAA+TGG | - | chr8_2:22955097-22955116 | None:intergenic | 35.0% | |
| AGATGCAACATCTTCTTCAA+TGG | - | chr8_2:22955102-22955121 | None:intergenic | 35.0% | |
| ! | CCTGACCCACATTAATTTTT+GGG | + | chr8_2:22955344-22955363 | Msa1240460:intron | 35.0% |
| !! | CTCAAAACACTTGATTTGTC+CGG | + | chr8_2:22955424-22955443 | Msa1240460:intron | 35.0% |
| AGATGAAACTGCAAAATCAG+AGG | + | chr8_2:22955810-22955829 | Msa1240460:CDS | 35.0% | |
| !!! | AATGGCATTGGAAAGTGTTT+TGG | - | chr8_2:22955836-22955855 | None:intergenic | 35.0% |
| TTGAGCATTCTTAATGGCAT+TGG | - | chr8_2:22955848-22955867 | None:intergenic | 35.0% | |
| TCAAAAGAAGCCAATTGTTG+AGG | + | chr8_2:22955864-22955883 | Msa1240460:CDS | 35.0% | |
| ACTTCATCATCCTCAACAAT+TGG | - | chr8_2:22955877-22955896 | None:intergenic | 35.0% | |
| ! | TGAATTTAGCTCAGTTGGTA+CGG | - | chr8_2:22956058-22956077 | None:intergenic | 35.0% |
| GTCATTAAGATCCTAGCAAA+AGG | - | chr8_2:22956146-22956165 | None:intergenic | 35.0% | |
| GCTAGGATCTTAATGACTTA+AGG | + | chr8_2:22956149-22956168 | Msa1240460:intron | 35.0% | |
| ! | TGCAGCATTGAAAATTGATG+TGG | + | chr8_2:22956330-22956349 | Msa1240460:CDS | 35.0% |
| TAGAGCTGACATTGATATGA+AGG | + | chr8_2:22956393-22956412 | Msa1240460:CDS | 35.0% | |
| ! | TTGAATGCCATATTCTGGGA+AGG | - | chr8_2:22953163-22953182 | None:intergenic | 40.0% |
| GCTTTAACTCAAGCTTTCTC+AGG | + | chr8_2:22953196-22953215 | Msa1240460:CDS | 40.0% | |
| CCTATAAGATTCTCTCTCCA+AGG | - | chr8_2:22953418-22953437 | None:intergenic | 40.0% | |
| CCTTGGAGAGAGAATCTTAT+AGG | + | chr8_2:22953415-22953434 | Msa1240460:CDS | 40.0% | |
| ATGAACGCCAATTTCAAAGG+TGG | + | chr8_2:22953469-22953488 | Msa1240460:CDS | 40.0% | |
| ACCTTAAAGGTGAACAAGTG+AGG | + | chr8_2:22954525-22954544 | Msa1240460:intron | 40.0% | |
| ACCTCACTTGTTCACCTTTA+AGG | - | chr8_2:22954529-22954548 | None:intergenic | 40.0% | |
| ! | CATAATTTATGCAGGTGTCG+GGG | - | chr8_2:22954566-22954585 | None:intergenic | 40.0% |
| GCATAATTTATGCAGGTGTC+GGG | - | chr8_2:22954567-22954586 | None:intergenic | 40.0% | |
| ! | TGAGTTTAGCTCACTTCGTA+AGG | - | chr8_2:22954595-22954614 | None:intergenic | 40.0% |
| CGTGACTTCATGATCTTACT+TGG | + | chr8_2:22954732-22954751 | Msa1240460:intron | 40.0% | |
| ! | TTAGGGCCTCTTTTGCTAAA+CGG | - | chr8_2:22954974-22954993 | None:intergenic | 40.0% |
| TGGAATGGTCAAAGAGAGAA+TGG | - | chr8_2:22955082-22955101 | None:intergenic | 40.0% | |
| CATCCATGGCAATGATAGAA+AGG | + | chr8_2:22955124-22955143 | Msa1240460:CDS | 40.0% | |
| GTACCTTTCTATCATTGCCA+TGG | - | chr8_2:22955130-22955149 | None:intergenic | 40.0% | |
| ! | GCCTGACCCACATTAATTTT+TGG | + | chr8_2:22955343-22955362 | Msa1240460:intron | 40.0% |
| CCCAAAAATTAATGTGGGTC+AGG | - | chr8_2:22955347-22955366 | None:intergenic | 40.0% | |
| !!! | TGTTTTGAGAAAGGTGAGGT+GGG | - | chr8_2:22955413-22955432 | None:intergenic | 40.0% |
| !!! | CAAGTGTTTTGAGAAAGGTG+AGG | - | chr8_2:22955417-22955436 | None:intergenic | 40.0% |
| GTGAGTGCCTATAGATATGA+AGG | + | chr8_2:22955775-22955794 | Msa1240460:CDS | 40.0% | |
| TTCTGGCAAGAATCTTGAAG+AGG | + | chr8_2:22955963-22955982 | Msa1240460:CDS | 40.0% | |
| ! | GCAGTCTCTTCAATTTTCTG+AGG | - | chr8_2:22956460-22956479 | None:intergenic | 40.0% |
| TTGCTAACCTTGATTGCTAG+AGG | + | chr8_2:22956502-22956521 | Msa1240460:CDS | 40.0% | |
| !! | GTAATTTTCAGGACATGGGG+TGG | + | chr8_2:22953353-22953372 | Msa1240460:intron | 45.0% |
| ATTGGGAAAATGGGATCCCT+TGG | + | chr8_2:22953398-22953417 | Msa1240460:CDS | 45.0% | |
| ATCAGAATGCAGTGGTGCTT+TGG | + | chr8_2:22954922-22954941 | Msa1240460:intron | 45.0% | |
| AGATGCCCGTTTAGCAAAAG+AGG | + | chr8_2:22954965-22954984 | Msa1240460:CDS | 45.0% | |
| ! | TAGGGCCTCTTTTGCTAAAC+GGG | - | chr8_2:22954973-22954992 | None:intergenic | 45.0% |
| GCAAAAGAGGCCCTAAAGAA+AGG | + | chr8_2:22954978-22954997 | Msa1240460:CDS | 45.0% | |
| TGCATGCACAAGATCTTCAG+AGG | + | chr8_2:22955031-22955050 | Msa1240460:CDS | 45.0% | |
| GATGTTGCATCTCACATCCA+TGG | + | chr8_2:22955110-22955129 | Msa1240460:CDS | 45.0% | |
| !!! | GTGTTTTGAGAAAGGTGAGG+TGG | - | chr8_2:22955414-22955433 | None:intergenic | 45.0% |
| ! | CCTCGTGAATTTAGCTCAGT+TGG | - | chr8_2:22956063-22956082 | None:intergenic | 45.0% |
| CCAACTGAGCTAAATTCACG+AGG | + | chr8_2:22956060-22956079 | Msa1240460:intron | 45.0% | |
| GACTGCTAAAGGGAACTACA+AGG | + | chr8_2:22956474-22956493 | Msa1240460:CDS | 45.0% | |
| CTAACCTTGATTGCTAGAGG+AGG | + | chr8_2:22956505-22956524 | Msa1240460:CDS | 45.0% | |
| TTAGCCTCCTCTAGCAATCA+AGG | - | chr8_2:22956512-22956531 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTATAATAGTTTTA+TGG | + | chr8_2:22953896-22953915 | Msa1240460:intron | 5.0% |
| !!! | TTTTTTTATAATAGTTTTAT+GGG | + | chr8_2:22953897-22953916 | Msa1240460:intron | 5.0% |
| !!! | AAAAAATTCTATTTTTTTTT+TGG | - | chr8_2:22954145-22954164 | None:intergenic | 5.0% |
| !!! | TTAAAAAATTCTAATTTTTT+TGG | + | chr8_2:22954236-22954255 | Msa1240460:intron | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+GGG | + | chr8_2:22954237-22954256 | Msa1240460:intron | 5.0% |
| !!! | ATTTTTATTTTAACAAAAAT+AGG | + | chr8_2:22955298-22955317 | Msa1240460:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTGTATAT+AGG | + | chr8_2:22956300-22956319 | Msa1240460:intron | 5.0% |
| ! | AGGTGAACAAGTGAGGTGTC+TGG | + | chr8_2:22954532-22954551 | Msa1240460:intron | 50.0% |
| ! | GGTGAACAAGTGAGGTGTCT+GGG | + | chr8_2:22954533-22954552 | Msa1240460:intron | 50.0% |
| ! | GTGAACAAGTGAGGTGTCTG+GGG | + | chr8_2:22954534-22954553 | Msa1240460:intron | 50.0% |
| CGAAGTGAGCTAAACTCACG+AGG | + | chr8_2:22954597-22954616 | Msa1240460:intron | 50.0% | |
| AACGGGCATCTCTTTCCCAA+GGG | - | chr8_2:22954956-22954975 | None:intergenic | 50.0% | |
| AAACGGGCATCTCTTTCCCA+AGG | - | chr8_2:22954957-22954976 | None:intergenic | 50.0% | |
| CAGAGGAACTATTGGGTGCT+AGG | + | chr8_2:22955048-22955067 | Msa1240460:CDS | 50.0% | |
| GGAACTATTGGGTGCTAGGA+AGG | + | chr8_2:22955052-22955071 | Msa1240460:CDS | 50.0% | |
| ATAGGCCAGCTCGAAGCAAA+TGG | + | chr8_2:22955316-22955335 | Msa1240460:intron | 50.0% | |
| CCAGCTCGAAGCAAATGGAA+CGG | + | chr8_2:22955321-22955340 | Msa1240460:intron | 50.0% | |
| !! | TGCTTTGGAGCATGCACCCT+TGG | + | chr8_2:22954937-22954956 | Msa1240460:CDS | 55.0% |
| !! | GCTTTGGAGCATGCACCCTT+GGG | + | chr8_2:22954938-22954957 | Msa1240460:CDS | 55.0% |
| CCGTTCCATTTGCTTCGAGC+TGG | - | chr8_2:22955324-22955343 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 22953101 | 22956774 | 22953101 | ID=Msa1240460;Name=Msa1240460 |
| chr8_2 | mRNA | 22953101 | 22956774 | 22953101 | ID=Msa1240460-mRNA-1;Parent=Msa1240460;Name=Msa1240460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=71|1|1|1|1|1|6|243|314 |
| chr8_2 | exon | 22953101 | 22953217 | 22953101 | ID=Msa1240460-mRNA-1:exon:8190;Parent=Msa1240460-mRNA-1 |
| chr8_2 | exon | 22953364 | 22953539 | 22953364 | ID=Msa1240460-mRNA-1:exon:8191;Parent=Msa1240460-mRNA-1 |
| chr8_2 | exon | 22954927 | 22955145 | 22954927 | ID=Msa1240460-mRNA-1:exon:8192;Parent=Msa1240460-mRNA-1 |
| chr8_2 | exon | 22955760 | 22955984 | 22955760 | ID=Msa1240460-mRNA-1:exon:8193;Parent=Msa1240460-mRNA-1 |
| chr8_2 | exon | 22956154 | 22956222 | 22956154 | ID=Msa1240460-mRNA-1:exon:8194;Parent=Msa1240460-mRNA-1 |
| chr8_2 | exon | 22956322 | 22956774 | 22956322 | ID=Msa1240460-mRNA-1:exon:8195;Parent=Msa1240460-mRNA-1 |
| chr8_2 | five_prime_UTR | 22953101 | 22953171 | 22953101 | ID=Msa1240460-mRNA-1:five_prime_utr;Parent=Msa1240460-mRNA-1 |
| chr8_2 | CDS | 22953172 | 22953217 | 22953172 | ID=Msa1240460-mRNA-1:cds;Parent=Msa1240460-mRNA-1 |
| chr8_2 | CDS | 22953364 | 22953539 | 22953364 | ID=Msa1240460-mRNA-1:cds;Parent=Msa1240460-mRNA-1 |
| chr8_2 | CDS | 22954927 | 22955145 | 22954927 | ID=Msa1240460-mRNA-1:cds;Parent=Msa1240460-mRNA-1 |
| chr8_2 | CDS | 22955760 | 22955984 | 22955760 | ID=Msa1240460-mRNA-1:cds;Parent=Msa1240460-mRNA-1 |
| chr8_2 | CDS | 22956154 | 22956222 | 22956154 | ID=Msa1240460-mRNA-1:cds;Parent=Msa1240460-mRNA-1 |
| chr8_2 | CDS | 22956322 | 22956531 | 22956322 | ID=Msa1240460-mRNA-1:cds;Parent=Msa1240460-mRNA-1 |
| chr8_2 | three_prime_UTR | 22956532 | 22956774 | 22956532 | ID=Msa1240460-mRNA-1:three_prime_utr;Parent=Msa1240460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
