Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241070 | XP_024628342.1 | 73.352 | 349 | 91 | 2 | 1 | 349 | 1 | 347 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241070 | sp|Q8L5A7|SOT15_ARATH | 48.318 | 327 | 162 | 4 | 22 | 346 | 36 | 357 | 3.34e-112 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241070 | A0A396GGH9 | 73.352 | 349 | 91 | 2 | 1 | 349 | 1 | 347 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1241070 | Msa1282520 | 0.876928 | 9.450027e-69 | -8.615850e-47 |
| Msa1186830 | Msa1241070 | 0.877427 | 6.341261e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241070 | MtrunA17_Chr8g0353721 | 73.352 | 349 | 91 | 2 | 1 | 349 | 1 | 347 | 0.0 | 530 |
| Msa1241070 | MtrunA17_Chr8g0351331 | 77.370 | 327 | 72 | 2 | 24 | 349 | 8 | 333 | 0.0 | 516 |
| Msa1241070 | MtrunA17_Chr7g0215701 | 66.568 | 338 | 104 | 3 | 13 | 349 | 7 | 336 | 6.45e-161 | 453 |
| Msa1241070 | MtrunA17_Chr7g0215691 | 64.571 | 350 | 110 | 4 | 1 | 349 | 1 | 337 | 1.59e-157 | 445 |
| Msa1241070 | MtrunA17_Chr8g0353731 | 62.463 | 341 | 120 | 7 | 1 | 339 | 1 | 335 | 1.17e-143 | 410 |
| Msa1241070 | MtrunA17_Chr8g0353591 | 61.538 | 325 | 120 | 3 | 23 | 346 | 5 | 325 | 1.62e-139 | 399 |
| Msa1241070 | MtrunA17_Chr3g0081701 | 58.702 | 339 | 127 | 5 | 9 | 346 | 12 | 338 | 4.94e-137 | 393 |
| Msa1241070 | MtrunA17_Chr8g0354381 | 63.359 | 262 | 95 | 1 | 85 | 346 | 1 | 261 | 1.38e-119 | 345 |
| Msa1241070 | MtrunA17_Chr8g0353921 | 73.991 | 223 | 58 | 0 | 124 | 346 | 24 | 246 | 2.41e-119 | 344 |
| Msa1241070 | MtrunA17_Chr8g0353691 | 70.852 | 223 | 65 | 0 | 127 | 349 | 27 | 249 | 1.97e-114 | 332 |
| Msa1241070 | MtrunA17_Chr8g0340661 | 57.818 | 275 | 84 | 5 | 1 | 274 | 1 | 244 | 4.38e-103 | 303 |
| Msa1241070 | MtrunA17_Chr8g0366191 | 46.626 | 326 | 169 | 3 | 20 | 345 | 13 | 333 | 1.08e-101 | 303 |
| Msa1241070 | MtrunA17_Chr3g0096081 | 44.479 | 326 | 174 | 4 | 21 | 345 | 17 | 336 | 4.06e-99 | 296 |
| Msa1241070 | MtrunA17_Chr3g0091901 | 44.343 | 327 | 176 | 4 | 20 | 345 | 13 | 334 | 9.60e-97 | 290 |
| Msa1241070 | MtrunA17_Chr8g0366181 | 41.615 | 322 | 163 | 2 | 24 | 345 | 16 | 312 | 8.81e-90 | 271 |
| Msa1241070 | MtrunA17_Chr8g0353631 | 83.846 | 130 | 20 | 1 | 220 | 349 | 4 | 132 | 1.73e-62 | 195 |
| Msa1241070 | MtrunA17_Chr3g0094771 | 46.078 | 204 | 109 | 1 | 142 | 345 | 18 | 220 | 9.66e-61 | 194 |
| Msa1241070 | MtrunA17_Chr8g0366241 | 43.961 | 207 | 112 | 2 | 142 | 345 | 4 | 209 | 1.77e-60 | 193 |
| Msa1241070 | MtrunA17_Chr8g0353871 | 60.736 | 163 | 58 | 5 | 85 | 245 | 2 | 160 | 3.57e-59 | 189 |
| Msa1241070 | MtrunA17_Chr8g0353861 | 55.959 | 193 | 72 | 6 | 7 | 198 | 4 | 184 | 7.03e-59 | 189 |
| Msa1241070 | MtrunA17_Chr8g0353841 | 58.824 | 102 | 42 | 0 | 234 | 335 | 1 | 102 | 1.98e-35 | 124 |
| Msa1241070 | MtrunA17_Chr8g0353671 | 55.435 | 92 | 23 | 1 | 226 | 317 | 41 | 114 | 2.52e-25 | 98.6 |
| Msa1241070 | MtrunA17_Chr8g0353671 | 67.347 | 49 | 14 | 1 | 85 | 131 | 1 | 49 | 1.93e-14 | 68.9 |
| Msa1241070 | MtrunA17_Chr8g0366161 | 52.830 | 53 | 25 | 0 | 237 | 289 | 2 | 54 | 9.55e-13 | 62.8 |
| Msa1241070 | MtrunA17_Chr3g0094781 | 38.028 | 71 | 44 | 0 | 35 | 105 | 28 | 98 | 4.12e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241070 | AT5G07010.1 | 48.318 | 327 | 162 | 4 | 22 | 346 | 36 | 357 | 3.39e-113 | 333 |
| Msa1241070 | AT5G07000.1 | 47.866 | 328 | 162 | 4 | 23 | 346 | 23 | 345 | 3.10e-109 | 323 |
| Msa1241070 | AT3G45070.3 | 44.051 | 311 | 170 | 3 | 35 | 345 | 22 | 328 | 2.24e-92 | 279 |
| Msa1241070 | AT3G45070.1 | 44.051 | 311 | 170 | 3 | 35 | 345 | 17 | 323 | 2.89e-92 | 279 |
| Msa1241070 | AT3G45070.2 | 44.051 | 311 | 170 | 3 | 35 | 345 | 49 | 355 | 9.85e-92 | 278 |
| Msa1241070 | AT3G45080.1 | 42.500 | 320 | 177 | 4 | 28 | 345 | 15 | 329 | 2.09e-86 | 264 |
| Msa1241070 | AT2G03770.1 | 42.331 | 326 | 175 | 4 | 20 | 345 | 10 | 322 | 8.41e-86 | 262 |
| Msa1241070 | AT1G13420.1 | 43.131 | 313 | 167 | 4 | 35 | 345 | 28 | 331 | 8.47e-85 | 260 |
| Msa1241070 | AT2G14920.1 | 41.456 | 316 | 174 | 4 | 35 | 345 | 24 | 333 | 2.90e-82 | 253 |
| Msa1241070 | AT5G43690.1 | 40.606 | 330 | 183 | 7 | 21 | 345 | 10 | 331 | 4.89e-82 | 253 |
| Msa1241070 | AT1G18590.1 | 41.853 | 313 | 167 | 6 | 32 | 338 | 33 | 336 | 4.60e-81 | 251 |
| Msa1241070 | AT1G74100.1 | 38.486 | 317 | 182 | 5 | 32 | 343 | 25 | 333 | 7.00e-78 | 242 |
| Msa1241070 | AT1G28170.1 | 42.415 | 323 | 178 | 4 | 26 | 345 | 9 | 326 | 6.59e-77 | 239 |
| Msa1241070 | AT1G13430.1 | 39.514 | 329 | 176 | 4 | 35 | 345 | 28 | 351 | 1.50e-74 | 234 |
| Msa1241070 | AT2G03760.1 | 42.547 | 322 | 174 | 4 | 25 | 345 | 13 | 324 | 1.02e-73 | 231 |
| Msa1241070 | AT4G26280.1 | 37.304 | 319 | 176 | 3 | 24 | 340 | 8 | 304 | 1.74e-73 | 230 |
| Msa1241070 | AT2G03750.1 | 37.963 | 324 | 193 | 4 | 24 | 346 | 35 | 351 | 2.11e-73 | 231 |
| Msa1241070 | AT1G74090.1 | 39.252 | 321 | 174 | 6 | 32 | 343 | 37 | 345 | 3.82e-68 | 218 |
| Msa1241070 | AT2G27570.1 | 33.648 | 318 | 152 | 3 | 28 | 345 | 15 | 273 | 4.58e-61 | 197 |
Find 64 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATTAACATCTTCTTTA+AGG | 0.111445 | 8_2:-24409215 | None:intergenic |
| TTGTCACTTCCTAAAGAAAA+TGG | 0.165977 | 8_2:+24408583 | Msa1241070:CDS |
| AACCATGTGGTGCCAGATTT+TGG | 0.212399 | 8_2:-24408730 | None:intergenic |
| TTGATACATTTGTGTCATAT+TGG | 0.271726 | 8_2:+24409016 | Msa1241070:CDS |
| GCAAAATAATTTATATATAT+AGG | 0.292858 | 8_2:+24408986 | Msa1241070:CDS |
| TTCAAGAATAAAATCTTATT+AGG | 0.305417 | 8_2:-24409183 | None:intergenic |
| TTTCTTGTTCACCCCTTGAT+TGG | 0.315825 | 8_2:-24408510 | None:intergenic |
| TTCTTTCGAAAGGGAGAAAT+AGG | 0.321441 | 8_2:+24409399 | Msa1241070:CDS |
| AAGGGCCACCTTTAAATGAT+AGG | 0.332985 | 8_2:-24409500 | None:intergenic |
| GACCATTTCTATCACCATAA+AGG | 0.335265 | 8_2:-24408864 | None:intergenic |
| GAATCAAACCTATCATTTAA+AGG | 0.336571 | 8_2:+24409492 | Msa1241070:CDS |
| ATGACACAAATGTATCAAAT+TGG | 0.339400 | 8_2:-24409011 | None:intergenic |
| ACTCAAGAAGAGGAAAATAA+TGG | 0.378296 | 8_2:+24409276 | Msa1241070:CDS |
| AACCTTTATGGTGATAGAAA+TGG | 0.388732 | 8_2:+24408862 | Msa1241070:CDS |
| TTTGAAAAGAGTTTATTGAT+TGG | 0.400016 | 8_2:-24408663 | None:intergenic |
| ATTGATTGGATGAGAGTTGA+TGG | 0.406498 | 8_2:-24408649 | None:intergenic |
| CAAAAGAATTGCAGAGTTTG+TGG | 0.409091 | 8_2:+24409242 | Msa1241070:CDS |
| GTAGCCTCCATGCCAAAATC+TGG | 0.409278 | 8_2:+24408718 | Msa1241070:CDS |
| GAAAGGGAGAAATAGGAGAT+TGG | 0.414054 | 8_2:+24409406 | Msa1241070:CDS |
| AAAATATAAATATTGGGTTA+GGG | 0.438804 | 8_2:-24408608 | None:intergenic |
| TAAGTGCGTATGGACCGTTT+TGG | 0.444155 | 8_2:+24409121 | Msa1241070:CDS |
| TTGGTTCAATCATAGTTGAT+AGG | 0.453185 | 8_2:-24408903 | None:intergenic |
| GGTTAACAATGGCATATGTA+AGG | 0.461890 | 8_2:-24408759 | None:intergenic |
| GGATCGAAGGGAAATCAATC+TGG | 0.461966 | 8_2:+24409345 | Msa1241070:CDS |
| AAATGGTCATCATTCTCAAA+TGG | 0.474877 | 8_2:+24408879 | Msa1241070:CDS |
| AAAAGAATTGCAGAGTTTGT+GGG | 0.476985 | 8_2:+24409243 | Msa1241070:CDS |
| AAAGGGAGAAATAGGAGATT+GGG | 0.482724 | 8_2:+24409407 | Msa1241070:CDS |
| CAAAGGAGGGAAAATGTTTG+CGG | 0.484909 | 8_2:-24408780 | None:intergenic |
| TCATATGTTGGGTTACTTGA+AGG | 0.485292 | 8_2:+24409146 | Msa1241070:CDS |
| AAAGATCTCACACATATGAA+TGG | 0.486528 | 8_2:+24408484 | Msa1241070:CDS |
| TAAAGGTTTAATTCAAAATG+AGG | 0.492008 | 8_2:-24408847 | None:intergenic |
| ATTTCATCTATGGTTAACAT+AGG | 0.493382 | 8_2:-24409075 | None:intergenic |
| TGTCACTTCCTAAAGAAAAT+GGG | 0.497318 | 8_2:+24408584 | Msa1241070:CDS |
| AATTAGTGAAGAAGATAAGC+TGG | 0.503949 | 8_2:+24408534 | Msa1241070:CDS |
| ATATGAATGGAAACCAATCA+AGG | 0.508675 | 8_2:+24408497 | Msa1241070:CDS |
| ATGCAGCTTTGAGAGTATGA+AGG | 0.513604 | 8_2:+24409323 | Msa1241070:CDS |
| ATTGGACTCTTGAACTGACT+TGG | 0.530681 | 8_2:-24408962 | None:intergenic |
| GACTTGGCCAACGTAGGGAA+TGG | 0.531744 | 8_2:-24408946 | None:intergenic |
| AAATATAAATATTGGGTTAG+GGG | 0.550368 | 8_2:-24408607 | None:intergenic |
| ATTTCCTTTCACTCAAGAAG+AGG | 0.550723 | 8_2:+24409266 | Msa1241070:CDS |
| TGTAATGGGATAAGTGCGTA+TGG | 0.555112 | 8_2:+24409111 | Msa1241070:CDS |
| AAAATGTTTGCGGTTAACAA+TGG | 0.564835 | 8_2:-24408770 | None:intergenic |
| TGCAGCTTTGAGAGTATGAA+GGG | 0.566275 | 8_2:+24409324 | Msa1241070:CDS |
| AAATGAGGCACTAATTCATG+TGG | 0.572595 | 8_2:-24408832 | None:intergenic |
| GAACTGACTTGGCCAACGTA+GGG | 0.577821 | 8_2:-24408951 | None:intergenic |
| TGAGAGTATGAAGGGATCGA+AGG | 0.580230 | 8_2:+24409332 | Msa1241070:CDS |
| GGATGGTCATTCTCAAAGGA+GGG | 0.580828 | 8_2:-24408793 | None:intergenic |
| TATGAATGGAAACCAATCAA+GGG | 0.586784 | 8_2:+24408498 | Msa1241070:CDS |
| GTTAACAATGGCATATGTAA+GGG | 0.587278 | 8_2:-24408758 | None:intergenic |
| GAGAGTATGAAGGGATCGAA+GGG | 0.587874 | 8_2:+24409333 | Msa1241070:CDS |
| CCCAACATATGATCCCAAAA+CGG | 0.591413 | 8_2:-24409135 | None:intergenic |
| TAATGGATGGTCATTCTCAA+AGG | 0.594736 | 8_2:-24408797 | None:intergenic |
| TGGATGGTCATTCTCAAAGG+AGG | 0.596431 | 8_2:-24408794 | None:intergenic |
| ACACCTTCCATTCCCTACGT+TGG | 0.610653 | 8_2:+24408939 | Msa1241070:CDS |
| TGGCCAACGTAGGGAATGGA+AGG | 0.616324 | 8_2:-24408942 | None:intergenic |
| TGCCAAAATCTGGCACCACA+TGG | 0.617416 | 8_2:+24408728 | Msa1241070:CDS |
| TGTGGATTGAATGCAAGTAA+TGG | 0.622386 | 8_2:-24408814 | None:intergenic |
| TCAAACCTATCATTTAAAGG+TGG | 0.644581 | 8_2:+24409495 | Msa1241070:CDS |
| ATGAATGGAAACCAATCAAG+GGG | 0.645694 | 8_2:+24408499 | Msa1241070:CDS |
| AGAAGAGGAAAATAATGGAG+TGG | 0.649746 | 8_2:+24409281 | Msa1241070:CDS |
| TGAACTGACTTGGCCAACGT+AGG | 0.669756 | 8_2:-24408952 | None:intergenic |
| GATTGAATGCAAGTAATGGA+TGG | 0.685646 | 8_2:-24408810 | None:intergenic |
| TATCAACTATGATTGAACCA+AGG | 0.689749 | 8_2:+24408905 | Msa1241070:CDS |
| TGTAAGGGCAGACAACCATG+TGG | 0.759668 | 8_2:-24408743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATGATAAAAATATAAATAT+TGG | - | chr8_2:24408618-24408637 | None:intergenic | 10.0% |
| !!! | CAATATTTATATTTTTATCA+TGG | + | chr8_2:24408616-24408635 | Msa1241070:CDS | 10.0% |
| !!! | TATATAAATTATTTTGCAAT+TGG | - | chr8_2:24408983-24409002 | None:intergenic | 10.0% |
| !! | GCAAAATAATTTATATATAT+AGG | + | chr8_2:24408986-24409005 | Msa1241070:CDS | 10.0% |
| !!! | ATTTTTGAAAAATATTGTAA+TGG | + | chr8_2:24409096-24409115 | Msa1241070:CDS | 10.0% |
| !!! | TTTTTGAAAAATATTGTAAT+GGG | + | chr8_2:24409097-24409116 | Msa1241070:CDS | 10.0% |
| !! | CATGATAAAAATATAAATAT+TGG | - | chr8_2:24408618-24408637 | None:intergenic | 10.0% |
| !!! | CAATATTTATATTTTTATCA+TGG | + | chr8_2:24408616-24408635 | Msa1241070:CDS | 10.0% |
| !!! | TATATAAATTATTTTGCAAT+TGG | - | chr8_2:24408983-24409002 | None:intergenic | 10.0% |
| !! | GCAAAATAATTTATATATAT+AGG | + | chr8_2:24408986-24409005 | Msa1241070:CDS | 10.0% |
| !!! | ATTTTTGAAAAATATTGTAA+TGG | + | chr8_2:24409096-24409115 | Msa1241070:CDS | 10.0% |
| !!! | TTTTTGAAAAATATTGTAAT+GGG | + | chr8_2:24409097-24409116 | Msa1241070:CDS | 10.0% |
| !! | AAAATATAAATATTGGGTTA+GGG | - | chr8_2:24408611-24408630 | None:intergenic | 15.0% |
| !! | AAAAATATAAATATTGGGTT+AGG | - | chr8_2:24408612-24408631 | None:intergenic | 15.0% |
| !!! | TATATTTTTATCATGGATTT+TGG | + | chr8_2:24408623-24408642 | Msa1241070:CDS | 15.0% |
| !!! | TTTTTCAAAAATTTCATCTA+TGG | - | chr8_2:24409088-24409107 | None:intergenic | 15.0% |
| !! | TTCAAGAATAAAATCTTATT+AGG | - | chr8_2:24409186-24409205 | None:intergenic | 15.0% |
| !!! | ATTTTATTCTTGAAATATGA+AGG | + | chr8_2:24409192-24409211 | Msa1241070:CDS | 15.0% |
| !! | AAAATATAAATATTGGGTTA+GGG | - | chr8_2:24408611-24408630 | None:intergenic | 15.0% |
| !! | AAAAATATAAATATTGGGTT+AGG | - | chr8_2:24408612-24408631 | None:intergenic | 15.0% |
| !!! | TATATTTTTATCATGGATTT+TGG | + | chr8_2:24408623-24408642 | Msa1241070:CDS | 15.0% |
| !!! | TTTTTCAAAAATTTCATCTA+TGG | - | chr8_2:24409088-24409107 | None:intergenic | 15.0% |
| !! | TTCAAGAATAAAATCTTATT+AGG | - | chr8_2:24409186-24409205 | None:intergenic | 15.0% |
| !!! | ATTTTATTCTTGAAATATGA+AGG | + | chr8_2:24409192-24409211 | Msa1241070:CDS | 15.0% |
| !!! | AAATATAAATATTGGGTTAG+GGG | - | chr8_2:24408610-24408629 | None:intergenic | 20.0% |
| !! | TTTGAAAAGAGTTTATTGAT+TGG | - | chr8_2:24408666-24408685 | None:intergenic | 20.0% |
| !! | TAAAGGTTTAATTCAAAATG+AGG | - | chr8_2:24408850-24408869 | None:intergenic | 20.0% |
| !!! | CATTTTGAATTAAACCTTTA+TGG | + | chr8_2:24408850-24408869 | Msa1241070:CDS | 20.0% |
| !! | GAAAATTAACATCTTCTTTA+AGG | - | chr8_2:24409218-24409237 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTTCTTTCGAAA+GGG | + | chr8_2:24409390-24409409 | Msa1241070:CDS | 20.0% |
| !!! | GATAATTTTTCTATCATTGA+AGG | - | chr8_2:24409447-24409466 | None:intergenic | 20.0% |
| !!! | TAATTTTTCTTCTATGACTT+TGG | - | chr8_2:24409469-24409488 | None:intergenic | 20.0% |
| !!! | AAATATAAATATTGGGTTAG+GGG | - | chr8_2:24408610-24408629 | None:intergenic | 20.0% |
| !! | TTTGAAAAGAGTTTATTGAT+TGG | - | chr8_2:24408666-24408685 | None:intergenic | 20.0% |
| !! | TAAAGGTTTAATTCAAAATG+AGG | - | chr8_2:24408850-24408869 | None:intergenic | 20.0% |
| !!! | CATTTTGAATTAAACCTTTA+TGG | + | chr8_2:24408850-24408869 | Msa1241070:CDS | 20.0% |
| !! | GAAAATTAACATCTTCTTTA+AGG | - | chr8_2:24409218-24409237 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTTCTTTCGAAA+GGG | + | chr8_2:24409390-24409409 | Msa1241070:CDS | 20.0% |
| !!! | GATAATTTTTCTATCATTGA+AGG | - | chr8_2:24409447-24409466 | None:intergenic | 20.0% |
| !!! | TAATTTTTCTTCTATGACTT+TGG | - | chr8_2:24409469-24409488 | None:intergenic | 20.0% |
| ! | ATGACACAAATGTATCAAAT+TGG | - | chr8_2:24409014-24409033 | None:intergenic | 25.0% |
| ! | TTGATACATTTGTGTCATAT+TGG | + | chr8_2:24409016-24409035 | Msa1241070:CDS | 25.0% |
| ! | ATTTCATCTATGGTTAACAT+AGG | - | chr8_2:24409078-24409097 | None:intergenic | 25.0% |
| !! | GAAAAAGTTTTTCTTTCGAA+AGG | + | chr8_2:24409389-24409408 | Msa1241070:CDS | 25.0% |
| ! | GAATCAAACCTATCATTTAA+AGG | + | chr8_2:24409492-24409511 | Msa1241070:CDS | 25.0% |
| ! | ATGACACAAATGTATCAAAT+TGG | - | chr8_2:24409014-24409033 | None:intergenic | 25.0% |
| ! | TTGATACATTTGTGTCATAT+TGG | + | chr8_2:24409016-24409035 | Msa1241070:CDS | 25.0% |
| ! | ATTTCATCTATGGTTAACAT+AGG | - | chr8_2:24409078-24409097 | None:intergenic | 25.0% |
| !! | GAAAAAGTTTTTCTTTCGAA+AGG | + | chr8_2:24409389-24409408 | Msa1241070:CDS | 25.0% |
| ! | GAATCAAACCTATCATTTAA+AGG | + | chr8_2:24409492-24409511 | Msa1241070:CDS | 25.0% |
| AAAGATCTCACACATATGAA+TGG | + | chr8_2:24408484-24408503 | Msa1241070:CDS | 30.0% | |
| ATATGAATGGAAACCAATCA+AGG | + | chr8_2:24408497-24408516 | Msa1241070:CDS | 30.0% | |
| TATGAATGGAAACCAATCAA+GGG | + | chr8_2:24408498-24408517 | Msa1241070:CDS | 30.0% | |
| AATTAGTGAAGAAGATAAGC+TGG | + | chr8_2:24408534-24408553 | Msa1241070:CDS | 30.0% | |
| ! | TTGTCACTTCCTAAAGAAAA+TGG | + | chr8_2:24408583-24408602 | Msa1241070:CDS | 30.0% |
| ! | TGTCACTTCCTAAAGAAAAT+GGG | + | chr8_2:24408584-24408603 | Msa1241070:CDS | 30.0% |
| GTTAACAATGGCATATGTAA+GGG | - | chr8_2:24408761-24408780 | None:intergenic | 30.0% | |
| AAAATGTTTGCGGTTAACAA+TGG | - | chr8_2:24408773-24408792 | None:intergenic | 30.0% | |
| AACCTTTATGGTGATAGAAA+TGG | + | chr8_2:24408862-24408881 | Msa1241070:CDS | 30.0% | |
| AAATGGTCATCATTCTCAAA+TGG | + | chr8_2:24408879-24408898 | Msa1241070:CDS | 30.0% | |
| TTGGTTCAATCATAGTTGAT+AGG | - | chr8_2:24408906-24408925 | None:intergenic | 30.0% | |
| TATCAACTATGATTGAACCA+AGG | + | chr8_2:24408905-24408924 | Msa1241070:CDS | 30.0% | |
| AAAAGAATTGCAGAGTTTGT+GGG | + | chr8_2:24409243-24409262 | Msa1241070:CDS | 30.0% | |
| ACTCAAGAAGAGGAAAATAA+TGG | + | chr8_2:24409276-24409295 | Msa1241070:CDS | 30.0% | |
| TCAAACCTATCATTTAAAGG+TGG | + | chr8_2:24409495-24409514 | Msa1241070:CDS | 30.0% | |
| AAAGATCTCACACATATGAA+TGG | + | chr8_2:24408484-24408503 | Msa1241070:CDS | 30.0% | |
| ATATGAATGGAAACCAATCA+AGG | + | chr8_2:24408497-24408516 | Msa1241070:CDS | 30.0% | |
| TATGAATGGAAACCAATCAA+GGG | + | chr8_2:24408498-24408517 | Msa1241070:CDS | 30.0% | |
| AATTAGTGAAGAAGATAAGC+TGG | + | chr8_2:24408534-24408553 | Msa1241070:CDS | 30.0% | |
| ! | TTGTCACTTCCTAAAGAAAA+TGG | + | chr8_2:24408583-24408602 | Msa1241070:CDS | 30.0% |
| ! | TGTCACTTCCTAAAGAAAAT+GGG | + | chr8_2:24408584-24408603 | Msa1241070:CDS | 30.0% |
| GTTAACAATGGCATATGTAA+GGG | - | chr8_2:24408761-24408780 | None:intergenic | 30.0% | |
| AAAATGTTTGCGGTTAACAA+TGG | - | chr8_2:24408773-24408792 | None:intergenic | 30.0% | |
| AACCTTTATGGTGATAGAAA+TGG | + | chr8_2:24408862-24408881 | Msa1241070:CDS | 30.0% | |
| AAATGGTCATCATTCTCAAA+TGG | + | chr8_2:24408879-24408898 | Msa1241070:CDS | 30.0% | |
| TTGGTTCAATCATAGTTGAT+AGG | - | chr8_2:24408906-24408925 | None:intergenic | 30.0% | |
| TATCAACTATGATTGAACCA+AGG | + | chr8_2:24408905-24408924 | Msa1241070:CDS | 30.0% | |
| AAAAGAATTGCAGAGTTTGT+GGG | + | chr8_2:24409243-24409262 | Msa1241070:CDS | 30.0% | |
| ACTCAAGAAGAGGAAAATAA+TGG | + | chr8_2:24409276-24409295 | Msa1241070:CDS | 30.0% | |
| TCAAACCTATCATTTAAAGG+TGG | + | chr8_2:24409495-24409514 | Msa1241070:CDS | 30.0% | |
| ATGAATGGAAACCAATCAAG+GGG | + | chr8_2:24408499-24408518 | Msa1241070:CDS | 35.0% | |
| ATTGATTGGATGAGAGTTGA+TGG | - | chr8_2:24408652-24408671 | None:intergenic | 35.0% | |
| GGTTAACAATGGCATATGTA+AGG | - | chr8_2:24408762-24408781 | None:intergenic | 35.0% | |
| ! | TAATGGATGGTCATTCTCAA+AGG | - | chr8_2:24408800-24408819 | None:intergenic | 35.0% |
| ! | GATTGAATGCAAGTAATGGA+TGG | - | chr8_2:24408813-24408832 | None:intergenic | 35.0% |
| ! | TGTGGATTGAATGCAAGTAA+TGG | - | chr8_2:24408817-24408836 | None:intergenic | 35.0% |
| ! | AAATGAGGCACTAATTCATG+TGG | - | chr8_2:24408835-24408854 | None:intergenic | 35.0% |
| GACCATTTCTATCACCATAA+AGG | - | chr8_2:24408867-24408886 | None:intergenic | 35.0% | |
| TCATATGTTGGGTTACTTGA+AGG | + | chr8_2:24409146-24409165 | Msa1241070:CDS | 35.0% | |
| ! | CAAACTCTGCAATTCTTTTG+AGG | - | chr8_2:24409242-24409261 | None:intergenic | 35.0% |
| CAAAAGAATTGCAGAGTTTG+TGG | + | chr8_2:24409242-24409261 | Msa1241070:CDS | 35.0% | |
| ATTTCCTTTCACTCAAGAAG+AGG | + | chr8_2:24409266-24409285 | Msa1241070:CDS | 35.0% | |
| ! | TTTTCCTCTTCTTGAGTGAA+AGG | - | chr8_2:24409273-24409292 | None:intergenic | 35.0% |
| ! | AGAAGAGGAAAATAATGGAG+TGG | + | chr8_2:24409281-24409300 | Msa1241070:CDS | 35.0% |
| TTCTTTCGAAAGGGAGAAAT+AGG | + | chr8_2:24409399-24409418 | Msa1241070:CDS | 35.0% | |
| AAAGGGAGAAATAGGAGATT+GGG | + | chr8_2:24409407-24409426 | Msa1241070:CDS | 35.0% | |
| ATGAATGGAAACCAATCAAG+GGG | + | chr8_2:24408499-24408518 | Msa1241070:CDS | 35.0% | |
| ATTGATTGGATGAGAGTTGA+TGG | - | chr8_2:24408652-24408671 | None:intergenic | 35.0% | |
| GGTTAACAATGGCATATGTA+AGG | - | chr8_2:24408762-24408781 | None:intergenic | 35.0% | |
| ! | TAATGGATGGTCATTCTCAA+AGG | - | chr8_2:24408800-24408819 | None:intergenic | 35.0% |
| ! | GATTGAATGCAAGTAATGGA+TGG | - | chr8_2:24408813-24408832 | None:intergenic | 35.0% |
| ! | TGTGGATTGAATGCAAGTAA+TGG | - | chr8_2:24408817-24408836 | None:intergenic | 35.0% |
| ! | AAATGAGGCACTAATTCATG+TGG | - | chr8_2:24408835-24408854 | None:intergenic | 35.0% |
| GACCATTTCTATCACCATAA+AGG | - | chr8_2:24408867-24408886 | None:intergenic | 35.0% | |
| TCATATGTTGGGTTACTTGA+AGG | + | chr8_2:24409146-24409165 | Msa1241070:CDS | 35.0% | |
| ! | CAAACTCTGCAATTCTTTTG+AGG | - | chr8_2:24409242-24409261 | None:intergenic | 35.0% |
| CAAAAGAATTGCAGAGTTTG+TGG | + | chr8_2:24409242-24409261 | Msa1241070:CDS | 35.0% | |
| ATTTCCTTTCACTCAAGAAG+AGG | + | chr8_2:24409266-24409285 | Msa1241070:CDS | 35.0% | |
| ! | TTTTCCTCTTCTTGAGTGAA+AGG | - | chr8_2:24409273-24409292 | None:intergenic | 35.0% |
| ! | AGAAGAGGAAAATAATGGAG+TGG | + | chr8_2:24409281-24409300 | Msa1241070:CDS | 35.0% |
| TTCTTTCGAAAGGGAGAAAT+AGG | + | chr8_2:24409399-24409418 | Msa1241070:CDS | 35.0% | |
| AAAGGGAGAAATAGGAGATT+GGG | + | chr8_2:24409407-24409426 | Msa1241070:CDS | 35.0% | |
| TTTCTTGTTCACCCCTTGAT+TGG | - | chr8_2:24408513-24408532 | None:intergenic | 40.0% | |
| CAAAGGAGGGAAAATGTTTG+CGG | - | chr8_2:24408783-24408802 | None:intergenic | 40.0% | |
| AGGTGTGTTACAAAAAGCCT+TGG | - | chr8_2:24408925-24408944 | None:intergenic | 40.0% | |
| ATTGGACTCTTGAACTGACT+TGG | - | chr8_2:24408965-24408984 | None:intergenic | 40.0% | |
| ! | TGTAATGGGATAAGTGCGTA+TGG | + | chr8_2:24409111-24409130 | Msa1241070:CDS | 40.0% |
| !!! | ACCGTTTTGGGATCATATGT+TGG | + | chr8_2:24409134-24409153 | Msa1241070:CDS | 40.0% |
| CCCAACATATGATCCCAAAA+CGG | - | chr8_2:24409138-24409157 | None:intergenic | 40.0% | |
| !!! | CCGTTTTGGGATCATATGTT+GGG | + | chr8_2:24409135-24409154 | Msa1241070:CDS | 40.0% |
| !! | ATGCAGCTTTGAGAGTATGA+AGG | + | chr8_2:24409323-24409342 | Msa1241070:CDS | 40.0% |
| !! | TGCAGCTTTGAGAGTATGAA+GGG | + | chr8_2:24409324-24409343 | Msa1241070:CDS | 40.0% |
| GAAAGGGAGAAATAGGAGAT+TGG | + | chr8_2:24409406-24409425 | Msa1241070:CDS | 40.0% | |
| AAGGGCCACCTTTAAATGAT+AGG | - | chr8_2:24409503-24409522 | None:intergenic | 40.0% | |
| TTTCTTGTTCACCCCTTGAT+TGG | - | chr8_2:24408513-24408532 | None:intergenic | 40.0% | |
| CAAAGGAGGGAAAATGTTTG+CGG | - | chr8_2:24408783-24408802 | None:intergenic | 40.0% | |
| AGGTGTGTTACAAAAAGCCT+TGG | - | chr8_2:24408925-24408944 | None:intergenic | 40.0% | |
| ATTGGACTCTTGAACTGACT+TGG | - | chr8_2:24408965-24408984 | None:intergenic | 40.0% | |
| ! | TGTAATGGGATAAGTGCGTA+TGG | + | chr8_2:24409111-24409130 | Msa1241070:CDS | 40.0% |
| !!! | ACCGTTTTGGGATCATATGT+TGG | + | chr8_2:24409134-24409153 | Msa1241070:CDS | 40.0% |
| CCCAACATATGATCCCAAAA+CGG | - | chr8_2:24409138-24409157 | None:intergenic | 40.0% | |
| !!! | CCGTTTTGGGATCATATGTT+GGG | + | chr8_2:24409135-24409154 | Msa1241070:CDS | 40.0% |
| !! | ATGCAGCTTTGAGAGTATGA+AGG | + | chr8_2:24409323-24409342 | Msa1241070:CDS | 40.0% |
| !! | TGCAGCTTTGAGAGTATGAA+GGG | + | chr8_2:24409324-24409343 | Msa1241070:CDS | 40.0% |
| GAAAGGGAGAAATAGGAGAT+TGG | + | chr8_2:24409406-24409425 | Msa1241070:CDS | 40.0% | |
| AAGGGCCACCTTTAAATGAT+AGG | - | chr8_2:24409503-24409522 | None:intergenic | 40.0% | |
| ! | GTTAGGGGCCCATTTTCTTT+AGG | - | chr8_2:24408595-24408614 | None:intergenic | 45.0% |
| !! | AACCATGTGGTGCCAGATTT+TGG | - | chr8_2:24408733-24408752 | None:intergenic | 45.0% |
| GGATGGTCATTCTCAAAGGA+GGG | - | chr8_2:24408796-24408815 | None:intergenic | 45.0% | |
| TGGATGGTCATTCTCAAAGG+AGG | - | chr8_2:24408797-24408816 | None:intergenic | 45.0% | |
| ! | TAAGTGCGTATGGACCGTTT+TGG | + | chr8_2:24409121-24409140 | Msa1241070:CDS | 45.0% |
| ! | AAGTGCGTATGGACCGTTTT+GGG | + | chr8_2:24409122-24409141 | Msa1241070:CDS | 45.0% |
| ! | TGAGAGTATGAAGGGATCGA+AGG | + | chr8_2:24409332-24409351 | Msa1241070:CDS | 45.0% |
| ! | GAGAGTATGAAGGGATCGAA+GGG | + | chr8_2:24409333-24409352 | Msa1241070:CDS | 45.0% |
| GGATCGAAGGGAAATCAATC+TGG | + | chr8_2:24409345-24409364 | Msa1241070:CDS | 45.0% | |
| ! | GTTAGGGGCCCATTTTCTTT+AGG | - | chr8_2:24408595-24408614 | None:intergenic | 45.0% |
| !! | AACCATGTGGTGCCAGATTT+TGG | - | chr8_2:24408733-24408752 | None:intergenic | 45.0% |
| GGATGGTCATTCTCAAAGGA+GGG | - | chr8_2:24408796-24408815 | None:intergenic | 45.0% | |
| TGGATGGTCATTCTCAAAGG+AGG | - | chr8_2:24408797-24408816 | None:intergenic | 45.0% | |
| ! | TAAGTGCGTATGGACCGTTT+TGG | + | chr8_2:24409121-24409140 | Msa1241070:CDS | 45.0% |
| ! | AAGTGCGTATGGACCGTTTT+GGG | + | chr8_2:24409122-24409141 | Msa1241070:CDS | 45.0% |
| ! | TGAGAGTATGAAGGGATCGA+AGG | + | chr8_2:24409332-24409351 | Msa1241070:CDS | 45.0% |
| ! | GAGAGTATGAAGGGATCGAA+GGG | + | chr8_2:24409333-24409352 | Msa1241070:CDS | 45.0% |
| GGATCGAAGGGAAATCAATC+TGG | + | chr8_2:24409345-24409364 | Msa1241070:CDS | 45.0% | |
| !! | ATGATAAAAATATAAATATT+GGG | - | chr8_2:24408617-24408636 | None:intergenic | 5.0% |
| !! | ATGATAAAAATATAAATATT+GGG | - | chr8_2:24408617-24408636 | None:intergenic | 5.0% |
| GTAGCCTCCATGCCAAAATC+TGG | + | chr8_2:24408718-24408737 | Msa1241070:CDS | 50.0% | |
| !! | TGTGGTGCCAGATTTTGGCA+TGG | - | chr8_2:24408728-24408747 | None:intergenic | 50.0% |
| TGCCAAAATCTGGCACCACA+TGG | + | chr8_2:24408728-24408747 | Msa1241070:CDS | 50.0% | |
| TGTAAGGGCAGACAACCATG+TGG | - | chr8_2:24408746-24408765 | None:intergenic | 50.0% | |
| ACACCTTCCATTCCCTACGT+TGG | + | chr8_2:24408939-24408958 | Msa1241070:CDS | 50.0% | |
| !! | GAACTGACTTGGCCAACGTA+GGG | - | chr8_2:24408954-24408973 | None:intergenic | 50.0% |
| !! | TGAACTGACTTGGCCAACGT+AGG | - | chr8_2:24408955-24408974 | None:intergenic | 50.0% |
| GTAGCCTCCATGCCAAAATC+TGG | + | chr8_2:24408718-24408737 | Msa1241070:CDS | 50.0% | |
| !! | TGTGGTGCCAGATTTTGGCA+TGG | - | chr8_2:24408728-24408747 | None:intergenic | 50.0% |
| TGCCAAAATCTGGCACCACA+TGG | + | chr8_2:24408728-24408747 | Msa1241070:CDS | 50.0% | |
| TGTAAGGGCAGACAACCATG+TGG | - | chr8_2:24408746-24408765 | None:intergenic | 50.0% | |
| ACACCTTCCATTCCCTACGT+TGG | + | chr8_2:24408939-24408958 | Msa1241070:CDS | 50.0% | |
| !! | GAACTGACTTGGCCAACGTA+GGG | - | chr8_2:24408954-24408973 | None:intergenic | 50.0% |
| !! | TGAACTGACTTGGCCAACGT+AGG | - | chr8_2:24408955-24408974 | None:intergenic | 50.0% |
| !! | GGTGCCAGATTTTGGCATGG+AGG | - | chr8_2:24408725-24408744 | None:intergenic | 55.0% |
| TGGCCAACGTAGGGAATGGA+AGG | - | chr8_2:24408945-24408964 | None:intergenic | 55.0% | |
| GACTTGGCCAACGTAGGGAA+TGG | - | chr8_2:24408949-24408968 | None:intergenic | 55.0% | |
| !! | GGTGCCAGATTTTGGCATGG+AGG | - | chr8_2:24408725-24408744 | None:intergenic | 55.0% |
| TGGCCAACGTAGGGAATGGA+AGG | - | chr8_2:24408945-24408964 | None:intergenic | 55.0% | |
| GACTTGGCCAACGTAGGGAA+TGG | - | chr8_2:24408949-24408968 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 24408475 | 24409524 | 24408475 | ID=Msa1241070;Name=Msa1241070 |
| chr8_2 | mRNA | 24408475 | 24409524 | 24408475 | ID=Msa1241070-mRNA-1;Parent=Msa1241070;Name=Msa1241070-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|349 |
| chr8_2 | exon | 24408475 | 24409524 | 24408475 | ID=Msa1241070-mRNA-1:exon:8631;Parent=Msa1241070-mRNA-1 |
| chr8_2 | CDS | 24408475 | 24409524 | 24408475 | ID=Msa1241070-mRNA-1:cds;Parent=Msa1241070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
