Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282520 | XP_003627983.1 | 74.855 | 346 | 86 | 1 | 1 | 346 | 1 | 345 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282520 | sp|Q8L5A7|SOT15_ARATH | 49.235 | 327 | 159 | 4 | 22 | 346 | 36 | 357 | 8.96e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282520 | G7LHN4 | 74.855 | 346 | 86 | 1 | 1 | 346 | 1 | 345 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1241070 | Msa1282520 | 0.876928 | 9.450027e-69 | -8.615850e-47 |
| Msa1186830 | Msa1282520 | 0.896882 | 2.406006e-76 | -8.615850e-47 |
| Msa0974750 | Msa1282520 | 0.802804 | 4.715839e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282520 | MtrunA17_Chr8g0353721 | 73.926 | 349 | 89 | 2 | 1 | 349 | 1 | 347 | 0.0 | 536 |
| Msa1282520 | MtrunA17_Chr8g0351331 | 77.982 | 327 | 70 | 2 | 24 | 349 | 8 | 333 | 0.0 | 523 |
| Msa1282520 | MtrunA17_Chr7g0215701 | 67.160 | 338 | 102 | 3 | 13 | 349 | 7 | 336 | 8.05e-164 | 461 |
| Msa1282520 | MtrunA17_Chr7g0215691 | 65.143 | 350 | 108 | 4 | 1 | 349 | 1 | 337 | 1.85e-160 | 452 |
| Msa1282520 | MtrunA17_Chr8g0353731 | 62.463 | 341 | 120 | 7 | 1 | 339 | 1 | 335 | 1.01e-144 | 413 |
| Msa1282520 | MtrunA17_Chr8g0353591 | 61.538 | 325 | 120 | 3 | 23 | 346 | 5 | 325 | 1.36e-140 | 402 |
| Msa1282520 | MtrunA17_Chr3g0081701 | 59.292 | 339 | 125 | 5 | 9 | 346 | 12 | 338 | 4.21e-140 | 400 |
| Msa1282520 | MtrunA17_Chr8g0353921 | 74.888 | 223 | 56 | 0 | 124 | 346 | 24 | 246 | 6.97e-122 | 351 |
| Msa1282520 | MtrunA17_Chr8g0354381 | 64.122 | 262 | 93 | 1 | 85 | 346 | 1 | 261 | 8.66e-122 | 351 |
| Msa1282520 | MtrunA17_Chr8g0353691 | 71.300 | 223 | 64 | 0 | 127 | 349 | 27 | 249 | 1.90e-116 | 337 |
| Msa1282520 | MtrunA17_Chr8g0340661 | 58.182 | 275 | 83 | 5 | 1 | 274 | 1 | 244 | 5.29e-105 | 308 |
| Msa1282520 | MtrunA17_Chr8g0366191 | 47.239 | 326 | 167 | 3 | 20 | 345 | 13 | 333 | 1.62e-104 | 310 |
| Msa1282520 | MtrunA17_Chr3g0096081 | 44.785 | 326 | 173 | 4 | 21 | 345 | 17 | 336 | 1.73e-101 | 302 |
| Msa1282520 | MtrunA17_Chr3g0091901 | 44.648 | 327 | 175 | 4 | 20 | 345 | 13 | 334 | 4.38e-99 | 296 |
| Msa1282520 | MtrunA17_Chr8g0366181 | 41.615 | 322 | 163 | 2 | 24 | 345 | 16 | 312 | 1.30e-90 | 274 |
| Msa1282520 | MtrunA17_Chr8g0353631 | 83.846 | 130 | 20 | 1 | 220 | 349 | 4 | 132 | 4.15e-63 | 197 |
| Msa1282520 | MtrunA17_Chr3g0094771 | 46.569 | 204 | 108 | 1 | 142 | 345 | 18 | 220 | 2.21e-62 | 198 |
| Msa1282520 | MtrunA17_Chr8g0366241 | 43.961 | 207 | 112 | 2 | 142 | 345 | 4 | 209 | 8.52e-62 | 196 |
| Msa1282520 | MtrunA17_Chr8g0353871 | 60.736 | 163 | 58 | 5 | 85 | 245 | 2 | 160 | 1.57e-59 | 190 |
| Msa1282520 | MtrunA17_Chr8g0353861 | 55.959 | 193 | 72 | 6 | 7 | 198 | 4 | 184 | 5.43e-59 | 189 |
| Msa1282520 | MtrunA17_Chr8g0353841 | 58.824 | 102 | 42 | 0 | 234 | 335 | 1 | 102 | 3.13e-36 | 127 |
| Msa1282520 | MtrunA17_Chr8g0353671 | 56.522 | 92 | 22 | 1 | 226 | 317 | 41 | 114 | 1.72e-26 | 101 |
| Msa1282520 | MtrunA17_Chr8g0353671 | 69.388 | 49 | 13 | 1 | 85 | 131 | 1 | 49 | 5.51e-15 | 70.5 |
| Msa1282520 | MtrunA17_Chr8g0366161 | 52.830 | 53 | 25 | 0 | 237 | 289 | 2 | 54 | 2.85e-13 | 63.9 |
| Msa1282520 | MtrunA17_Chr3g0094781 | 38.028 | 71 | 44 | 0 | 35 | 105 | 28 | 98 | 2.72e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282520 | AT5G07010.1 | 49.235 | 327 | 159 | 4 | 22 | 346 | 36 | 357 | 9.10e-117 | 342 |
| Msa1282520 | AT5G07000.1 | 48.171 | 328 | 161 | 4 | 23 | 346 | 23 | 345 | 2.69e-111 | 328 |
| Msa1282520 | AT3G45070.1 | 43.730 | 311 | 171 | 3 | 35 | 345 | 17 | 323 | 7.34e-93 | 280 |
| Msa1282520 | AT3G45070.3 | 43.730 | 311 | 171 | 3 | 35 | 345 | 22 | 328 | 8.90e-93 | 280 |
| Msa1282520 | AT3G45070.2 | 43.730 | 311 | 171 | 3 | 35 | 345 | 49 | 355 | 3.88e-92 | 280 |
| Msa1282520 | AT2G03770.1 | 42.638 | 326 | 174 | 4 | 20 | 345 | 10 | 322 | 3.30e-88 | 268 |
| Msa1282520 | AT1G13420.1 | 43.770 | 313 | 165 | 4 | 35 | 345 | 28 | 331 | 5.33e-88 | 268 |
| Msa1282520 | AT3G45080.1 | 42.500 | 320 | 177 | 4 | 28 | 345 | 15 | 329 | 1.82e-87 | 266 |
| Msa1282520 | AT2G14920.1 | 42.089 | 316 | 172 | 4 | 35 | 345 | 24 | 333 | 1.31e-85 | 262 |
| Msa1282520 | AT5G43690.1 | 40.785 | 331 | 181 | 8 | 21 | 345 | 10 | 331 | 1.85e-84 | 259 |
| Msa1282520 | AT1G18590.1 | 41.667 | 312 | 169 | 5 | 32 | 338 | 33 | 336 | 2.05e-80 | 249 |
| Msa1282520 | AT1G74100.1 | 38.486 | 317 | 182 | 5 | 32 | 343 | 25 | 333 | 7.79e-78 | 242 |
| Msa1282520 | AT1G13430.1 | 39.818 | 329 | 175 | 4 | 35 | 345 | 28 | 351 | 1.73e-77 | 242 |
| Msa1282520 | AT2G03760.1 | 43.168 | 322 | 172 | 4 | 25 | 345 | 13 | 324 | 4.56e-77 | 240 |
| Msa1282520 | AT4G26280.1 | 37.618 | 319 | 175 | 3 | 24 | 340 | 8 | 304 | 7.68e-77 | 239 |
| Msa1282520 | AT1G28170.1 | 42.105 | 323 | 179 | 4 | 26 | 345 | 9 | 326 | 1.11e-76 | 239 |
| Msa1282520 | AT2G03750.1 | 38.272 | 324 | 192 | 4 | 24 | 346 | 35 | 351 | 2.49e-76 | 239 |
| Msa1282520 | AT1G74090.1 | 39.117 | 317 | 180 | 5 | 32 | 343 | 37 | 345 | 3.70e-68 | 218 |
| Msa1282520 | AT2G27570.1 | 33.962 | 318 | 151 | 3 | 28 | 345 | 15 | 273 | 1.79e-63 | 203 |
Find 60 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATTAACATCTTCTTTA+AGG | 0.083240 | 8_3:-23074330 | None:intergenic |
| AACCATGTGGTGCCAGATTT+TGG | 0.212399 | 8_3:-23073845 | None:intergenic |
| TTGATACATTTGTGTCATAT+TGG | 0.271726 | 8_3:+23074131 | Msa1282520:CDS |
| TTCAAGAATAAAATCTTATT+AGG | 0.305417 | 8_3:-23074298 | None:intergenic |
| TTTCTTGTTCACCCCTTGAT+TGG | 0.315825 | 8_3:-23073625 | None:intergenic |
| TTCTTTCGAAAGGGAGAAAT+AGG | 0.321441 | 8_3:+23074514 | Msa1282520:CDS |
| AAGGGCCACCTTTAAATGAT+AGG | 0.332985 | 8_3:-23074615 | None:intergenic |
| GACCATTTCTATCACCATAA+AGG | 0.335265 | 8_3:-23073979 | None:intergenic |
| GAATCAAACCTATCATTTAA+AGG | 0.336571 | 8_3:+23074607 | Msa1282520:CDS |
| ATGACACAAATGTATCAAAT+TGG | 0.339400 | 8_3:-23074126 | None:intergenic |
| TTGTCACTTCCTAAAGAAAA+TGG | 0.342211 | 8_3:+23073698 | Msa1282520:CDS |
| ACTCAAGAAGAGGAAAATAA+TGG | 0.378296 | 8_3:+23074391 | Msa1282520:CDS |
| AACCTTTATGGTGATAGAAA+TGG | 0.388732 | 8_3:+23073977 | Msa1282520:CDS |
| TTTGAAAAGAGTTTATTGAT+TGG | 0.400016 | 8_3:-23073778 | None:intergenic |
| ATTGATTGGATGAGAGTTGA+TGG | 0.406498 | 8_3:-23073764 | None:intergenic |
| CAAAAGAATTGCAGAGTTTG+TGG | 0.409091 | 8_3:+23074357 | Msa1282520:CDS |
| GTAGCCTCCATGCCAAAATC+TGG | 0.409278 | 8_3:+23073833 | Msa1282520:CDS |
| GAAAGGGAGAAATAGGAGAT+TGG | 0.414054 | 8_3:+23074521 | Msa1282520:CDS |
| GCAAAATAATTTATATATGT+AGG | 0.429143 | 8_3:+23074101 | Msa1282520:CDS |
| TAAGTGCGTATGGACCGTTT+TGG | 0.444155 | 8_3:+23074236 | Msa1282520:CDS |
| TTGGTTCAATCATAGTTGAT+AGG | 0.453185 | 8_3:-23074018 | None:intergenic |
| GGTTAACAATGGCATATGTA+AGG | 0.461890 | 8_3:-23073874 | None:intergenic |
| GGATCGAAGGGAAATCAATC+TGG | 0.461966 | 8_3:+23074460 | Msa1282520:CDS |
| AAATGGTCATCATTCTCAAA+TGG | 0.474877 | 8_3:+23073994 | Msa1282520:CDS |
| CAAAAGAGGGAAAATGTTTG+CGG | 0.475151 | 8_3:-23073895 | None:intergenic |
| AAAAGAATTGCAGAGTTTGT+GGG | 0.476985 | 8_3:+23074358 | Msa1282520:CDS |
| AAAGGGAGAAATAGGAGATT+GGG | 0.482724 | 8_3:+23074522 | Msa1282520:CDS |
| TCATATGTTGGGTTACTTGA+AGG | 0.485292 | 8_3:+23074261 | Msa1282520:CDS |
| AAAGATCTCACACATATGAA+TGG | 0.486528 | 8_3:+23073599 | Msa1282520:CDS |
| TAAAGGTTTAATTCAAAATG+AGG | 0.492008 | 8_3:-23073962 | None:intergenic |
| ATTTCATCTATGGTTAACAT+AGG | 0.493382 | 8_3:-23074190 | None:intergenic |
| AATTAGTGAAGAAGATAAGC+TGG | 0.503949 | 8_3:+23073649 | Msa1282520:CDS |
| ATATGAATGGAAACCAATCA+AGG | 0.508675 | 8_3:+23073612 | Msa1282520:CDS |
| ATGCAGCTTTGAGAGTATGA+AGG | 0.513604 | 8_3:+23074438 | Msa1282520:CDS |
| ATTGGACTCTTGAACTGACT+TGG | 0.530681 | 8_3:-23074077 | None:intergenic |
| GACTTGGCCAACGTAGGGAA+TGG | 0.531744 | 8_3:-23074061 | None:intergenic |
| TGGATGGTTATTCTCAAAAG+AGG | 0.533464 | 8_3:-23073909 | None:intergenic |
| ATTTCCTTTCACTCAAGAAG+AGG | 0.550723 | 8_3:+23074381 | Msa1282520:CDS |
| TGTAATGGGATAAGTGCGTA+TGG | 0.555112 | 8_3:+23074226 | Msa1282520:CDS |
| AAAATGTTTGCGGTTAACAA+TGG | 0.564835 | 8_3:-23073885 | None:intergenic |
| TGCAGCTTTGAGAGTATGAA+GGG | 0.566275 | 8_3:+23074439 | Msa1282520:CDS |
| AAATGAGGCACTAATTCATG+TGG | 0.572595 | 8_3:-23073947 | None:intergenic |
| GAACTGACTTGGCCAACGTA+GGG | 0.577821 | 8_3:-23074066 | None:intergenic |
| TGAGAGTATGAAGGGATCGA+AGG | 0.580230 | 8_3:+23074447 | Msa1282520:CDS |
| GGATGGTTATTCTCAAAAGA+GGG | 0.581253 | 8_3:-23073908 | None:intergenic |
| TATGAATGGAAACCAATCAA+GGG | 0.586784 | 8_3:+23073613 | Msa1282520:CDS |
| GTTAACAATGGCATATGTAA+GGG | 0.587278 | 8_3:-23073873 | None:intergenic |
| GAGAGTATGAAGGGATCGAA+GGG | 0.587874 | 8_3:+23074448 | Msa1282520:CDS |
| CCCAACATATGATCCCAAAA+CGG | 0.591413 | 8_3:-23074250 | None:intergenic |
| ACACCTTCCATTCCCTACGT+TGG | 0.610653 | 8_3:+23074054 | Msa1282520:CDS |
| TGGCCAACGTAGGGAATGGA+AGG | 0.616324 | 8_3:-23074057 | None:intergenic |
| TGCCAAAATCTGGCACCACA+TGG | 0.617416 | 8_3:+23073843 | Msa1282520:CDS |
| TGTGGATTGAATGCAAGTAA+TGG | 0.622386 | 8_3:-23073929 | None:intergenic |
| TCAAACCTATCATTTAAAGG+TGG | 0.644581 | 8_3:+23074610 | Msa1282520:CDS |
| ATGAATGGAAACCAATCAAG+GGG | 0.645694 | 8_3:+23073614 | Msa1282520:CDS |
| AGAAGAGGAAAATAATGGAG+TGG | 0.649746 | 8_3:+23074396 | Msa1282520:CDS |
| GATTGAATGCAAGTAATGGA+TGG | 0.662295 | 8_3:-23073925 | None:intergenic |
| TGAACTGACTTGGCCAACGT+AGG | 0.669756 | 8_3:-23074067 | None:intergenic |
| TATCAACTATGATTGAACCA+AGG | 0.689749 | 8_3:+23074020 | Msa1282520:CDS |
| TGTAAGGGCAGACAACCATG+TGG | 0.759668 | 8_3:-23073858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATAAAAATACAAATATT+GGG | - | chr8_3:23073732-23073751 | None:intergenic | 10.0% |
| !!! | TATATAAATTATTTTGCAAT+TGG | - | chr8_3:23074098-23074117 | None:intergenic | 10.0% |
| !!! | ATTTTTGAAAAATATTGTAA+TGG | + | chr8_3:23074211-23074230 | Msa1282520:CDS | 10.0% |
| !!! | TTTTTGAAAAATATTGTAAT+GGG | + | chr8_3:23074212-23074231 | Msa1282520:CDS | 10.0% |
| !! | ATGATAAAAATACAAATATT+GGG | - | chr8_3:23073732-23073751 | None:intergenic | 10.0% |
| !!! | TATATAAATTATTTTGCAAT+TGG | - | chr8_3:23074098-23074117 | None:intergenic | 10.0% |
| !!! | ATTTTTGAAAAATATTGTAA+TGG | + | chr8_3:23074211-23074230 | Msa1282520:CDS | 10.0% |
| !!! | TTTTTGAAAAATATTGTAAT+GGG | + | chr8_3:23074212-23074231 | Msa1282520:CDS | 10.0% |
| !! | CATGATAAAAATACAAATAT+TGG | - | chr8_3:23073733-23073752 | None:intergenic | 15.0% |
| !!! | CAATATTTGTATTTTTATCA+TGG | + | chr8_3:23073731-23073750 | Msa1282520:CDS | 15.0% |
| !! | GCAAAATAATTTATATATGT+AGG | + | chr8_3:23074101-23074120 | Msa1282520:CDS | 15.0% |
| !!! | TTTTTCAAAAATTTCATCTA+TGG | - | chr8_3:23074203-23074222 | None:intergenic | 15.0% |
| !! | TTCAAGAATAAAATCTTATT+AGG | - | chr8_3:23074301-23074320 | None:intergenic | 15.0% |
| !! | CATGATAAAAATACAAATAT+TGG | - | chr8_3:23073733-23073752 | None:intergenic | 15.0% |
| !!! | CAATATTTGTATTTTTATCA+TGG | + | chr8_3:23073731-23073750 | Msa1282520:CDS | 15.0% |
| !! | GCAAAATAATTTATATATGT+AGG | + | chr8_3:23074101-23074120 | Msa1282520:CDS | 15.0% |
| !!! | TTTTTCAAAAATTTCATCTA+TGG | - | chr8_3:23074203-23074222 | None:intergenic | 15.0% |
| !! | TTCAAGAATAAAATCTTATT+AGG | - | chr8_3:23074301-23074320 | None:intergenic | 15.0% |
| !! | AAAAATACAAATATTGGGTT+AGG | - | chr8_3:23073727-23073746 | None:intergenic | 20.0% |
| !!! | TGTATTTTTATCATGGATTT+TGG | + | chr8_3:23073738-23073757 | Msa1282520:CDS | 20.0% |
| !! | TTTGAAAAGAGTTTATTGAT+TGG | - | chr8_3:23073781-23073800 | None:intergenic | 20.0% |
| !! | TAAAGGTTTAATTCAAAATG+AGG | - | chr8_3:23073965-23073984 | None:intergenic | 20.0% |
| !!! | CATTTTGAATTAAACCTTTA+TGG | + | chr8_3:23073965-23073984 | Msa1282520:CDS | 20.0% |
| !! | GAAAATTAACATCTTCTTTA+AGG | - | chr8_3:23074333-23074352 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTTCTTTCGAAA+GGG | + | chr8_3:23074505-23074524 | Msa1282520:CDS | 20.0% |
| !!! | TAATTTTTCTTCTATGACTT+TGG | - | chr8_3:23074584-23074603 | None:intergenic | 20.0% |
| !! | AAAAATACAAATATTGGGTT+AGG | - | chr8_3:23073727-23073746 | None:intergenic | 20.0% |
| !!! | TGTATTTTTATCATGGATTT+TGG | + | chr8_3:23073738-23073757 | Msa1282520:CDS | 20.0% |
| !! | TTTGAAAAGAGTTTATTGAT+TGG | - | chr8_3:23073781-23073800 | None:intergenic | 20.0% |
| !! | TAAAGGTTTAATTCAAAATG+AGG | - | chr8_3:23073965-23073984 | None:intergenic | 20.0% |
| !!! | CATTTTGAATTAAACCTTTA+TGG | + | chr8_3:23073965-23073984 | Msa1282520:CDS | 20.0% |
| !! | GAAAATTAACATCTTCTTTA+AGG | - | chr8_3:23074333-23074352 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTTCTTTCGAAA+GGG | + | chr8_3:23074505-23074524 | Msa1282520:CDS | 20.0% |
| !!! | TAATTTTTCTTCTATGACTT+TGG | - | chr8_3:23074584-23074603 | None:intergenic | 20.0% |
| ! | ATGACACAAATGTATCAAAT+TGG | - | chr8_3:23074129-23074148 | None:intergenic | 25.0% |
| ! | TTGATACATTTGTGTCATAT+TGG | + | chr8_3:23074131-23074150 | Msa1282520:CDS | 25.0% |
| ! | ATTTCATCTATGGTTAACAT+AGG | - | chr8_3:23074193-23074212 | None:intergenic | 25.0% |
| !! | GAAAAAGTTTTTCTTTCGAA+AGG | + | chr8_3:23074504-23074523 | Msa1282520:CDS | 25.0% |
| !! | GATAATTTTTCTGTCATTGA+AGG | - | chr8_3:23074562-23074581 | None:intergenic | 25.0% |
| ! | GAATCAAACCTATCATTTAA+AGG | + | chr8_3:23074607-23074626 | Msa1282520:CDS | 25.0% |
| ! | ATGACACAAATGTATCAAAT+TGG | - | chr8_3:23074129-23074148 | None:intergenic | 25.0% |
| ! | TTGATACATTTGTGTCATAT+TGG | + | chr8_3:23074131-23074150 | Msa1282520:CDS | 25.0% |
| ! | ATTTCATCTATGGTTAACAT+AGG | - | chr8_3:23074193-23074212 | None:intergenic | 25.0% |
| !! | GAAAAAGTTTTTCTTTCGAA+AGG | + | chr8_3:23074504-23074523 | Msa1282520:CDS | 25.0% |
| !! | GATAATTTTTCTGTCATTGA+AGG | - | chr8_3:23074562-23074581 | None:intergenic | 25.0% |
| ! | GAATCAAACCTATCATTTAA+AGG | + | chr8_3:23074607-23074626 | Msa1282520:CDS | 25.0% |
| AAAGATCTCACACATATGAA+TGG | + | chr8_3:23073599-23073618 | Msa1282520:CDS | 30.0% | |
| ATATGAATGGAAACCAATCA+AGG | + | chr8_3:23073612-23073631 | Msa1282520:CDS | 30.0% | |
| TATGAATGGAAACCAATCAA+GGG | + | chr8_3:23073613-23073632 | Msa1282520:CDS | 30.0% | |
| AATTAGTGAAGAAGATAAGC+TGG | + | chr8_3:23073649-23073668 | Msa1282520:CDS | 30.0% | |
| ! | TTGTCACTTCCTAAAGAAAA+TGG | + | chr8_3:23073698-23073717 | Msa1282520:CDS | 30.0% |
| GTTAACAATGGCATATGTAA+GGG | - | chr8_3:23073876-23073895 | None:intergenic | 30.0% | |
| AAAATGTTTGCGGTTAACAA+TGG | - | chr8_3:23073888-23073907 | None:intergenic | 30.0% | |
| AACCTTTATGGTGATAGAAA+TGG | + | chr8_3:23073977-23073996 | Msa1282520:CDS | 30.0% | |
| AAATGGTCATCATTCTCAAA+TGG | + | chr8_3:23073994-23074013 | Msa1282520:CDS | 30.0% | |
| TTGGTTCAATCATAGTTGAT+AGG | - | chr8_3:23074021-23074040 | None:intergenic | 30.0% | |
| TATCAACTATGATTGAACCA+AGG | + | chr8_3:23074020-23074039 | Msa1282520:CDS | 30.0% | |
| AAAAGAATTGCAGAGTTTGT+GGG | + | chr8_3:23074358-23074377 | Msa1282520:CDS | 30.0% | |
| ACTCAAGAAGAGGAAAATAA+TGG | + | chr8_3:23074391-23074410 | Msa1282520:CDS | 30.0% | |
| TCAAACCTATCATTTAAAGG+TGG | + | chr8_3:23074610-23074629 | Msa1282520:CDS | 30.0% | |
| AAAGATCTCACACATATGAA+TGG | + | chr8_3:23073599-23073618 | Msa1282520:CDS | 30.0% | |
| ATATGAATGGAAACCAATCA+AGG | + | chr8_3:23073612-23073631 | Msa1282520:CDS | 30.0% | |
| TATGAATGGAAACCAATCAA+GGG | + | chr8_3:23073613-23073632 | Msa1282520:CDS | 30.0% | |
| AATTAGTGAAGAAGATAAGC+TGG | + | chr8_3:23073649-23073668 | Msa1282520:CDS | 30.0% | |
| ! | TTGTCACTTCCTAAAGAAAA+TGG | + | chr8_3:23073698-23073717 | Msa1282520:CDS | 30.0% |
| GTTAACAATGGCATATGTAA+GGG | - | chr8_3:23073876-23073895 | None:intergenic | 30.0% | |
| AAAATGTTTGCGGTTAACAA+TGG | - | chr8_3:23073888-23073907 | None:intergenic | 30.0% | |
| AACCTTTATGGTGATAGAAA+TGG | + | chr8_3:23073977-23073996 | Msa1282520:CDS | 30.0% | |
| AAATGGTCATCATTCTCAAA+TGG | + | chr8_3:23073994-23074013 | Msa1282520:CDS | 30.0% | |
| TTGGTTCAATCATAGTTGAT+AGG | - | chr8_3:23074021-23074040 | None:intergenic | 30.0% | |
| TATCAACTATGATTGAACCA+AGG | + | chr8_3:23074020-23074039 | Msa1282520:CDS | 30.0% | |
| AAAAGAATTGCAGAGTTTGT+GGG | + | chr8_3:23074358-23074377 | Msa1282520:CDS | 30.0% | |
| ACTCAAGAAGAGGAAAATAA+TGG | + | chr8_3:23074391-23074410 | Msa1282520:CDS | 30.0% | |
| TCAAACCTATCATTTAAAGG+TGG | + | chr8_3:23074610-23074629 | Msa1282520:CDS | 30.0% | |
| ATGAATGGAAACCAATCAAG+GGG | + | chr8_3:23073614-23073633 | Msa1282520:CDS | 35.0% | |
| ! | GTTAGGTGACCATTTTCTTT+AGG | - | chr8_3:23073710-23073729 | None:intergenic | 35.0% |
| ATTGATTGGATGAGAGTTGA+TGG | - | chr8_3:23073767-23073786 | None:intergenic | 35.0% | |
| GGTTAACAATGGCATATGTA+AGG | - | chr8_3:23073877-23073896 | None:intergenic | 35.0% | |
| CAAAAGAGGGAAAATGTTTG+CGG | - | chr8_3:23073898-23073917 | None:intergenic | 35.0% | |
| GGATGGTTATTCTCAAAAGA+GGG | - | chr8_3:23073911-23073930 | None:intergenic | 35.0% | |
| TGGATGGTTATTCTCAAAAG+AGG | - | chr8_3:23073912-23073931 | None:intergenic | 35.0% | |
| ! | GATTGAATGCAAGTAATGGA+TGG | - | chr8_3:23073928-23073947 | None:intergenic | 35.0% |
| ! | TGTGGATTGAATGCAAGTAA+TGG | - | chr8_3:23073932-23073951 | None:intergenic | 35.0% |
| ! | AAATGAGGCACTAATTCATG+TGG | - | chr8_3:23073950-23073969 | None:intergenic | 35.0% |
| GACCATTTCTATCACCATAA+AGG | - | chr8_3:23073982-23074001 | None:intergenic | 35.0% | |
| TCATATGTTGGGTTACTTGA+AGG | + | chr8_3:23074261-23074280 | Msa1282520:CDS | 35.0% | |
| ! | CAAACTCTGCAATTCTTTTG+AGG | - | chr8_3:23074357-23074376 | None:intergenic | 35.0% |
| CAAAAGAATTGCAGAGTTTG+TGG | + | chr8_3:23074357-23074376 | Msa1282520:CDS | 35.0% | |
| ATTTCCTTTCACTCAAGAAG+AGG | + | chr8_3:23074381-23074400 | Msa1282520:CDS | 35.0% | |
| ! | TTTTCCTCTTCTTGAGTGAA+AGG | - | chr8_3:23074388-23074407 | None:intergenic | 35.0% |
| ! | AGAAGAGGAAAATAATGGAG+TGG | + | chr8_3:23074396-23074415 | Msa1282520:CDS | 35.0% |
| TTCTTTCGAAAGGGAGAAAT+AGG | + | chr8_3:23074514-23074533 | Msa1282520:CDS | 35.0% | |
| AAAGGGAGAAATAGGAGATT+GGG | + | chr8_3:23074522-23074541 | Msa1282520:CDS | 35.0% | |
| ATGAATGGAAACCAATCAAG+GGG | + | chr8_3:23073614-23073633 | Msa1282520:CDS | 35.0% | |
| ! | GTTAGGTGACCATTTTCTTT+AGG | - | chr8_3:23073710-23073729 | None:intergenic | 35.0% |
| ATTGATTGGATGAGAGTTGA+TGG | - | chr8_3:23073767-23073786 | None:intergenic | 35.0% | |
| GGTTAACAATGGCATATGTA+AGG | - | chr8_3:23073877-23073896 | None:intergenic | 35.0% | |
| CAAAAGAGGGAAAATGTTTG+CGG | - | chr8_3:23073898-23073917 | None:intergenic | 35.0% | |
| GGATGGTTATTCTCAAAAGA+GGG | - | chr8_3:23073911-23073930 | None:intergenic | 35.0% | |
| TGGATGGTTATTCTCAAAAG+AGG | - | chr8_3:23073912-23073931 | None:intergenic | 35.0% | |
| ! | GATTGAATGCAAGTAATGGA+TGG | - | chr8_3:23073928-23073947 | None:intergenic | 35.0% |
| ! | TGTGGATTGAATGCAAGTAA+TGG | - | chr8_3:23073932-23073951 | None:intergenic | 35.0% |
| ! | AAATGAGGCACTAATTCATG+TGG | - | chr8_3:23073950-23073969 | None:intergenic | 35.0% |
| GACCATTTCTATCACCATAA+AGG | - | chr8_3:23073982-23074001 | None:intergenic | 35.0% | |
| TCATATGTTGGGTTACTTGA+AGG | + | chr8_3:23074261-23074280 | Msa1282520:CDS | 35.0% | |
| ! | CAAACTCTGCAATTCTTTTG+AGG | - | chr8_3:23074357-23074376 | None:intergenic | 35.0% |
| CAAAAGAATTGCAGAGTTTG+TGG | + | chr8_3:23074357-23074376 | Msa1282520:CDS | 35.0% | |
| ATTTCCTTTCACTCAAGAAG+AGG | + | chr8_3:23074381-23074400 | Msa1282520:CDS | 35.0% | |
| ! | TTTTCCTCTTCTTGAGTGAA+AGG | - | chr8_3:23074388-23074407 | None:intergenic | 35.0% |
| ! | AGAAGAGGAAAATAATGGAG+TGG | + | chr8_3:23074396-23074415 | Msa1282520:CDS | 35.0% |
| TTCTTTCGAAAGGGAGAAAT+AGG | + | chr8_3:23074514-23074533 | Msa1282520:CDS | 35.0% | |
| AAAGGGAGAAATAGGAGATT+GGG | + | chr8_3:23074522-23074541 | Msa1282520:CDS | 35.0% | |
| TTTCTTGTTCACCCCTTGAT+TGG | - | chr8_3:23073628-23073647 | None:intergenic | 40.0% | |
| AGGTGTGTTACAAAAAGCCT+TGG | - | chr8_3:23074040-23074059 | None:intergenic | 40.0% | |
| ATTGGACTCTTGAACTGACT+TGG | - | chr8_3:23074080-23074099 | None:intergenic | 40.0% | |
| ! | TGTAATGGGATAAGTGCGTA+TGG | + | chr8_3:23074226-23074245 | Msa1282520:CDS | 40.0% |
| !!! | ACCGTTTTGGGATCATATGT+TGG | + | chr8_3:23074249-23074268 | Msa1282520:CDS | 40.0% |
| CCCAACATATGATCCCAAAA+CGG | - | chr8_3:23074253-23074272 | None:intergenic | 40.0% | |
| !!! | CCGTTTTGGGATCATATGTT+GGG | + | chr8_3:23074250-23074269 | Msa1282520:CDS | 40.0% |
| !! | ATGCAGCTTTGAGAGTATGA+AGG | + | chr8_3:23074438-23074457 | Msa1282520:CDS | 40.0% |
| !! | TGCAGCTTTGAGAGTATGAA+GGG | + | chr8_3:23074439-23074458 | Msa1282520:CDS | 40.0% |
| GAAAGGGAGAAATAGGAGAT+TGG | + | chr8_3:23074521-23074540 | Msa1282520:CDS | 40.0% | |
| AAGGGCCACCTTTAAATGAT+AGG | - | chr8_3:23074618-23074637 | None:intergenic | 40.0% | |
| TTTCTTGTTCACCCCTTGAT+TGG | - | chr8_3:23073628-23073647 | None:intergenic | 40.0% | |
| AGGTGTGTTACAAAAAGCCT+TGG | - | chr8_3:23074040-23074059 | None:intergenic | 40.0% | |
| ATTGGACTCTTGAACTGACT+TGG | - | chr8_3:23074080-23074099 | None:intergenic | 40.0% | |
| ! | TGTAATGGGATAAGTGCGTA+TGG | + | chr8_3:23074226-23074245 | Msa1282520:CDS | 40.0% |
| !!! | ACCGTTTTGGGATCATATGT+TGG | + | chr8_3:23074249-23074268 | Msa1282520:CDS | 40.0% |
| CCCAACATATGATCCCAAAA+CGG | - | chr8_3:23074253-23074272 | None:intergenic | 40.0% | |
| !!! | CCGTTTTGGGATCATATGTT+GGG | + | chr8_3:23074250-23074269 | Msa1282520:CDS | 40.0% |
| !! | ATGCAGCTTTGAGAGTATGA+AGG | + | chr8_3:23074438-23074457 | Msa1282520:CDS | 40.0% |
| !! | TGCAGCTTTGAGAGTATGAA+GGG | + | chr8_3:23074439-23074458 | Msa1282520:CDS | 40.0% |
| GAAAGGGAGAAATAGGAGAT+TGG | + | chr8_3:23074521-23074540 | Msa1282520:CDS | 40.0% | |
| AAGGGCCACCTTTAAATGAT+AGG | - | chr8_3:23074618-23074637 | None:intergenic | 40.0% | |
| !! | AACCATGTGGTGCCAGATTT+TGG | - | chr8_3:23073848-23073867 | None:intergenic | 45.0% |
| ! | TAAGTGCGTATGGACCGTTT+TGG | + | chr8_3:23074236-23074255 | Msa1282520:CDS | 45.0% |
| ! | AAGTGCGTATGGACCGTTTT+GGG | + | chr8_3:23074237-23074256 | Msa1282520:CDS | 45.0% |
| ! | TGAGAGTATGAAGGGATCGA+AGG | + | chr8_3:23074447-23074466 | Msa1282520:CDS | 45.0% |
| ! | GAGAGTATGAAGGGATCGAA+GGG | + | chr8_3:23074448-23074467 | Msa1282520:CDS | 45.0% |
| GGATCGAAGGGAAATCAATC+TGG | + | chr8_3:23074460-23074479 | Msa1282520:CDS | 45.0% | |
| !! | AACCATGTGGTGCCAGATTT+TGG | - | chr8_3:23073848-23073867 | None:intergenic | 45.0% |
| ! | TAAGTGCGTATGGACCGTTT+TGG | + | chr8_3:23074236-23074255 | Msa1282520:CDS | 45.0% |
| ! | AAGTGCGTATGGACCGTTTT+GGG | + | chr8_3:23074237-23074256 | Msa1282520:CDS | 45.0% |
| ! | TGAGAGTATGAAGGGATCGA+AGG | + | chr8_3:23074447-23074466 | Msa1282520:CDS | 45.0% |
| ! | GAGAGTATGAAGGGATCGAA+GGG | + | chr8_3:23074448-23074467 | Msa1282520:CDS | 45.0% |
| GGATCGAAGGGAAATCAATC+TGG | + | chr8_3:23074460-23074479 | Msa1282520:CDS | 45.0% | |
| GTAGCCTCCATGCCAAAATC+TGG | + | chr8_3:23073833-23073852 | Msa1282520:CDS | 50.0% | |
| !! | TGTGGTGCCAGATTTTGGCA+TGG | - | chr8_3:23073843-23073862 | None:intergenic | 50.0% |
| TGCCAAAATCTGGCACCACA+TGG | + | chr8_3:23073843-23073862 | Msa1282520:CDS | 50.0% | |
| TGTAAGGGCAGACAACCATG+TGG | - | chr8_3:23073861-23073880 | None:intergenic | 50.0% | |
| ACACCTTCCATTCCCTACGT+TGG | + | chr8_3:23074054-23074073 | Msa1282520:CDS | 50.0% | |
| !! | GAACTGACTTGGCCAACGTA+GGG | - | chr8_3:23074069-23074088 | None:intergenic | 50.0% |
| !! | TGAACTGACTTGGCCAACGT+AGG | - | chr8_3:23074070-23074089 | None:intergenic | 50.0% |
| GTAGCCTCCATGCCAAAATC+TGG | + | chr8_3:23073833-23073852 | Msa1282520:CDS | 50.0% | |
| !! | TGTGGTGCCAGATTTTGGCA+TGG | - | chr8_3:23073843-23073862 | None:intergenic | 50.0% |
| TGCCAAAATCTGGCACCACA+TGG | + | chr8_3:23073843-23073862 | Msa1282520:CDS | 50.0% | |
| TGTAAGGGCAGACAACCATG+TGG | - | chr8_3:23073861-23073880 | None:intergenic | 50.0% | |
| ACACCTTCCATTCCCTACGT+TGG | + | chr8_3:23074054-23074073 | Msa1282520:CDS | 50.0% | |
| !! | GAACTGACTTGGCCAACGTA+GGG | - | chr8_3:23074069-23074088 | None:intergenic | 50.0% |
| !! | TGAACTGACTTGGCCAACGT+AGG | - | chr8_3:23074070-23074089 | None:intergenic | 50.0% |
| !! | GGTGCCAGATTTTGGCATGG+AGG | - | chr8_3:23073840-23073859 | None:intergenic | 55.0% |
| TGGCCAACGTAGGGAATGGA+AGG | - | chr8_3:23074060-23074079 | None:intergenic | 55.0% | |
| GACTTGGCCAACGTAGGGAA+TGG | - | chr8_3:23074064-23074083 | None:intergenic | 55.0% | |
| !! | GGTGCCAGATTTTGGCATGG+AGG | - | chr8_3:23073840-23073859 | None:intergenic | 55.0% |
| TGGCCAACGTAGGGAATGGA+AGG | - | chr8_3:23074060-23074079 | None:intergenic | 55.0% | |
| GACTTGGCCAACGTAGGGAA+TGG | - | chr8_3:23074064-23074083 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 23073590 | 23074639 | 23073590 | ID=Msa1282520;Name=Msa1282520 |
| chr8_3 | mRNA | 23073590 | 23074639 | 23073590 | ID=Msa1282520-mRNA-1;Parent=Msa1282520;Name=Msa1282520-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|349 |
| chr8_3 | exon | 23073590 | 23074639 | 23073590 | ID=Msa1282520-mRNA-1:exon:8210;Parent=Msa1282520-mRNA-1 |
| chr8_3 | CDS | 23073590 | 23074639 | 23073590 | ID=Msa1282520-mRNA-1:cds;Parent=Msa1282520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
