Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186830 | XP_024628342.1 | 73.352 | 349 | 91 | 2 | 1 | 349 | 1 | 347 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186830 | sp|Q8L5A7|SOT15_ARATH | 48.624 | 327 | 161 | 4 | 22 | 346 | 36 | 357 | 2.46e-114 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186830 | A0A396GGH9 | 73.352 | 349 | 91 | 2 | 1 | 349 | 1 | 347 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa1186830 | 0.823822 | 1.126369e-53 | -8.615850e-47 |
| Msa0032840 | Msa1186830 | -0.808895 | 2.473913e-50 | -8.615850e-47 |
| Msa0053110 | Msa1186830 | 0.835114 | 2.026117e-56 | -8.615850e-47 |
| Msa0073670 | Msa1186830 | 0.823388 | 1.422546e-53 | -8.615850e-47 |
| Msa0083920 | Msa1186830 | 0.819545 | 1.097896e-52 | -8.615850e-47 |
| Msa0098440 | Msa1186830 | 0.805604 | 1.232322e-49 | -8.615850e-47 |
| Msa0619980 | Msa1186830 | 0.801088 | 1.061845e-48 | -8.615850e-47 |
| Msa0692080 | Msa1186830 | 0.803435 | 3.491201e-49 | -8.615850e-47 |
| Msa0747780 | Msa1186830 | 0.838015 | 3.696023e-57 | -8.615850e-47 |
| Msa0799210 | Msa1186830 | 0.820179 | 7.864937e-53 | -8.615850e-47 |
| Msa0134130 | Msa1186830 | 0.807032 | 6.162125e-50 | -8.615850e-47 |
| Msa0203160 | Msa1186830 | 0.836515 | 8.945389e-57 | -8.615850e-47 |
| Msa0230550 | Msa1186830 | -0.805595 | 1.237633e-49 | -8.615850e-47 |
| Msa0436500 | Msa1186830 | 0.812490 | 4.129411e-51 | -8.615850e-47 |
| Msa1018790 | Msa1186830 | 0.809937 | 1.477938e-50 | -8.615850e-47 |
| Msa1033560 | Msa1186830 | 0.809205 | 2.123251e-50 | -8.615850e-47 |
| Msa1041530 | Msa1186830 | 0.825946 | 3.552859e-54 | -8.615850e-47 |
| Msa1061500 | Msa1186830 | 0.802148 | 6.437890e-49 | -8.615850e-47 |
| Msa1081570 | Msa1186830 | 0.808578 | 2.890981e-50 | -8.615850e-47 |
| Msa1127140 | Msa1186830 | 0.819790 | 9.653947e-53 | -8.615850e-47 |
| Msa1150970 | Msa1186830 | 0.804578 | 2.019257e-49 | -8.615850e-47 |
| Msa1166400 | Msa1186830 | 0.810497 | 1.119126e-50 | -8.615850e-47 |
| Msa1186830 | Msa1241070 | 0.877427 | 6.341261e-69 | -8.615850e-47 |
| Msa1186830 | Msa1246530 | -0.801927 | 7.146754e-49 | -8.615850e-47 |
| Msa1186830 | Msa1282520 | 0.896882 | 2.406006e-76 | -8.615850e-47 |
| Msa1186830 | Msa1365200 | 0.825359 | 4.893262e-54 | -8.615850e-47 |
| Msa1186830 | Msa1379990 | 0.819509 | 1.119096e-52 | -8.615850e-47 |
| Msa1186830 | Msa1420060 | 0.813348 | 2.678492e-51 | -8.615850e-47 |
| Msa0538220 | Msa1186830 | 0.820816 | 5.616385e-53 | -8.615850e-47 |
| Msa0552810 | Msa1186830 | 0.800011 | 1.760123e-48 | -8.615850e-47 |
| Msa0862100 | Msa1186830 | 0.807125 | 5.888607e-50 | -8.615850e-47 |
| Msa0872310 | Msa1186830 | 0.824139 | 9.488731e-54 | -8.615850e-47 |
| Msa0905260 | Msa1186830 | 0.807014 | 6.214652e-50 | -8.615850e-47 |
| Msa0905550 | Msa1186830 | 0.834853 | 2.357152e-56 | -8.615850e-47 |
| Msa0906370 | Msa1186830 | 0.809774 | 1.602505e-50 | -8.615850e-47 |
| Msa0937550 | Msa1186830 | 0.840423 | 8.772570e-58 | -8.615850e-47 |
| Msa0974750 | Msa1186830 | 0.819045 | 1.426858e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186830 | MtrunA17_Chr8g0353721 | 73.352 | 349 | 91 | 2 | 1 | 349 | 1 | 347 | 0.0 | 533 |
| Msa1186830 | MtrunA17_Chr8g0351331 | 77.370 | 327 | 72 | 2 | 24 | 349 | 8 | 333 | 0.0 | 519 |
| Msa1186830 | MtrunA17_Chr7g0215701 | 66.568 | 338 | 104 | 3 | 13 | 349 | 7 | 336 | 4.32e-162 | 456 |
| Msa1186830 | MtrunA17_Chr7g0215691 | 64.571 | 350 | 110 | 4 | 1 | 349 | 1 | 337 | 6.33e-159 | 448 |
| Msa1186830 | MtrunA17_Chr8g0353731 | 62.463 | 341 | 120 | 7 | 1 | 339 | 1 | 335 | 1.27e-143 | 410 |
| Msa1186830 | MtrunA17_Chr8g0353591 | 61.231 | 325 | 121 | 3 | 23 | 346 | 5 | 325 | 2.13e-140 | 401 |
| Msa1186830 | MtrunA17_Chr3g0081701 | 59.292 | 339 | 125 | 5 | 9 | 346 | 12 | 338 | 9.76e-140 | 400 |
| Msa1186830 | MtrunA17_Chr8g0354381 | 63.740 | 262 | 94 | 1 | 85 | 346 | 1 | 261 | 2.47e-121 | 350 |
| Msa1186830 | MtrunA17_Chr8g0353921 | 74.439 | 223 | 57 | 0 | 124 | 346 | 24 | 246 | 2.95e-121 | 349 |
| Msa1186830 | MtrunA17_Chr8g0353691 | 71.300 | 223 | 64 | 0 | 127 | 349 | 27 | 249 | 2.56e-116 | 337 |
| Msa1186830 | MtrunA17_Chr8g0340661 | 58.182 | 275 | 83 | 5 | 1 | 274 | 1 | 244 | 3.65e-105 | 308 |
| Msa1186830 | MtrunA17_Chr8g0366191 | 46.626 | 326 | 169 | 3 | 20 | 345 | 13 | 333 | 3.37e-103 | 306 |
| Msa1186830 | MtrunA17_Chr3g0096081 | 44.479 | 326 | 174 | 4 | 21 | 345 | 17 | 336 | 9.96e-101 | 300 |
| Msa1186830 | MtrunA17_Chr3g0091901 | 44.343 | 327 | 176 | 4 | 20 | 345 | 13 | 334 | 3.13e-98 | 294 |
| Msa1186830 | MtrunA17_Chr8g0366181 | 41.304 | 322 | 164 | 2 | 24 | 345 | 16 | 312 | 1.39e-89 | 271 |
| Msa1186830 | MtrunA17_Chr8g0353631 | 84.615 | 130 | 19 | 1 | 220 | 349 | 4 | 132 | 1.29e-63 | 198 |
| Msa1186830 | MtrunA17_Chr3g0094771 | 46.569 | 204 | 108 | 1 | 142 | 345 | 18 | 220 | 1.03e-62 | 199 |
| Msa1186830 | MtrunA17_Chr8g0366241 | 44.444 | 207 | 111 | 2 | 142 | 345 | 4 | 209 | 1.43e-62 | 198 |
| Msa1186830 | MtrunA17_Chr8g0353871 | 61.350 | 163 | 57 | 5 | 85 | 245 | 2 | 160 | 8.86e-60 | 191 |
| Msa1186830 | MtrunA17_Chr8g0353861 | 55.959 | 193 | 72 | 6 | 7 | 198 | 4 | 184 | 1.19e-58 | 188 |
| Msa1186830 | MtrunA17_Chr8g0353841 | 58.824 | 102 | 42 | 0 | 234 | 335 | 1 | 102 | 8.23e-36 | 125 |
| Msa1186830 | MtrunA17_Chr8g0353671 | 56.522 | 92 | 22 | 1 | 226 | 317 | 41 | 114 | 2.04e-26 | 101 |
| Msa1186830 | MtrunA17_Chr8g0353671 | 67.347 | 49 | 14 | 1 | 85 | 131 | 1 | 49 | 1.78e-14 | 68.9 |
| Msa1186830 | MtrunA17_Chr8g0366161 | 52.830 | 53 | 25 | 0 | 237 | 289 | 2 | 54 | 3.15e-13 | 63.9 |
| Msa1186830 | MtrunA17_Chr3g0094781 | 36.620 | 71 | 45 | 0 | 35 | 105 | 28 | 98 | 1.50e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186830 | AT5G07010.1 | 48.624 | 327 | 161 | 4 | 22 | 346 | 36 | 357 | 2.50e-115 | 339 |
| Msa1186830 | AT5G07000.1 | 48.171 | 328 | 161 | 4 | 23 | 346 | 23 | 345 | 2.84e-111 | 328 |
| Msa1186830 | AT3G45070.1 | 43.730 | 311 | 171 | 3 | 35 | 345 | 17 | 323 | 5.48e-92 | 278 |
| Msa1186830 | AT3G45070.3 | 43.730 | 311 | 171 | 3 | 35 | 345 | 22 | 328 | 6.63e-92 | 278 |
| Msa1186830 | AT3G45070.2 | 43.730 | 311 | 171 | 3 | 35 | 345 | 49 | 355 | 1.91e-91 | 278 |
| Msa1186830 | AT2G03770.1 | 42.638 | 326 | 174 | 4 | 20 | 345 | 10 | 322 | 1.15e-87 | 267 |
| Msa1186830 | AT1G13420.1 | 43.131 | 313 | 167 | 4 | 35 | 345 | 28 | 331 | 4.26e-86 | 263 |
| Msa1186830 | AT3G45080.1 | 42.188 | 320 | 178 | 4 | 28 | 345 | 15 | 329 | 4.41e-86 | 263 |
| Msa1186830 | AT2G14920.1 | 41.772 | 316 | 173 | 4 | 35 | 345 | 24 | 333 | 2.91e-84 | 258 |
| Msa1186830 | AT5G43690.1 | 40.606 | 330 | 183 | 7 | 21 | 345 | 10 | 331 | 1.39e-83 | 257 |
| Msa1186830 | AT1G18590.1 | 41.853 | 313 | 167 | 6 | 32 | 338 | 33 | 336 | 1.96e-80 | 249 |
| Msa1186830 | AT1G74100.1 | 37.389 | 337 | 197 | 6 | 12 | 343 | 6 | 333 | 5.22e-77 | 240 |
| Msa1186830 | AT1G28170.1 | 42.415 | 323 | 178 | 4 | 26 | 345 | 9 | 326 | 2.31e-76 | 238 |
| Msa1186830 | AT1G13430.1 | 39.514 | 329 | 176 | 4 | 35 | 345 | 28 | 351 | 4.61e-76 | 238 |
| Msa1186830 | AT2G03760.1 | 42.547 | 322 | 174 | 4 | 25 | 345 | 13 | 324 | 3.79e-75 | 235 |
| Msa1186830 | AT2G03750.1 | 37.963 | 324 | 193 | 4 | 24 | 346 | 35 | 351 | 6.48e-75 | 235 |
| Msa1186830 | AT4G26280.1 | 37.304 | 319 | 176 | 3 | 24 | 340 | 8 | 304 | 8.47e-75 | 234 |
| Msa1186830 | AT1G74090.1 | 39.875 | 321 | 172 | 7 | 32 | 343 | 37 | 345 | 1.67e-67 | 216 |
| Msa1186830 | AT2G27570.1 | 33.648 | 318 | 152 | 3 | 28 | 345 | 15 | 273 | 2.82e-62 | 200 |
Find 63 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATTAACATCTTCTTTA+AGG | 0.083240 | 8_1:-25822624 | None:intergenic |
| TTGTCACTTCCTAAAGAAAA+TGG | 0.165977 | 8_1:+25821992 | Msa1186830:CDS |
| AACCATGTGGTGCCAGATTT+TGG | 0.212399 | 8_1:-25822139 | None:intergenic |
| TTGATACATTTGTGTCATAT+TGG | 0.271726 | 8_1:+25822425 | Msa1186830:CDS |
| TTCAAGAATAAAATCTTATT+AGG | 0.305417 | 8_1:-25822592 | None:intergenic |
| TTTCTTGTTCACCCCTTGAT+TGG | 0.315825 | 8_1:-25821919 | None:intergenic |
| TTCTTTCGAAAGGGAGAAAT+AGG | 0.321441 | 8_1:+25822808 | Msa1186830:CDS |
| AAGGGCCACCTTTAAATGAT+AGG | 0.332985 | 8_1:-25822909 | None:intergenic |
| GACCATTTCTATCACCATAA+AGG | 0.335265 | 8_1:-25822273 | None:intergenic |
| GAATCAAACCTATCATTTAA+AGG | 0.336571 | 8_1:+25822901 | Msa1186830:CDS |
| ATGACACAAATGTATCAAAT+TGG | 0.339400 | 8_1:-25822420 | None:intergenic |
| ATTGATTTGATGAGAGTTGA+TGG | 0.357404 | 8_1:-25822058 | None:intergenic |
| ACTCAAGAAGAGGAAAATAA+TGG | 0.378296 | 8_1:+25822685 | Msa1186830:CDS |
| AACCTTTATGGTGATAGAAA+TGG | 0.388732 | 8_1:+25822271 | Msa1186830:CDS |
| CAAAAGAATTGCAGAGTTTG+TGG | 0.409091 | 8_1:+25822651 | Msa1186830:CDS |
| GTAGCCTCCATGCCAAAATC+TGG | 0.409278 | 8_1:+25822127 | Msa1186830:CDS |
| GAAAGGGAGAAATAGGAGAT+TGG | 0.414054 | 8_1:+25822815 | Msa1186830:CDS |
| GCAAAATAATTTATATATGT+AGG | 0.429143 | 8_1:+25822395 | Msa1186830:CDS |
| AAAATATAAATATTGGGTTA+GGG | 0.438804 | 8_1:-25822017 | None:intergenic |
| TAAGTGCGTATGGACCGTTT+TGG | 0.444155 | 8_1:+25822530 | Msa1186830:CDS |
| TTGGTTCAATAATAGTTGAT+AGG | 0.453185 | 8_1:-25822312 | None:intergenic |
| GGTTAACAATGGCATATGTA+AGG | 0.461890 | 8_1:-25822168 | None:intergenic |
| GGATCGAAGGGAAATCAATC+TGG | 0.461966 | 8_1:+25822754 | Msa1186830:CDS |
| AAATGGTCATCATTCTCAAA+TGG | 0.474877 | 8_1:+25822288 | Msa1186830:CDS |
| AAAAGAATTGCAGAGTTTGT+GGG | 0.476985 | 8_1:+25822652 | Msa1186830:CDS |
| AAAGGGAGAAATAGGAGATT+GGG | 0.482724 | 8_1:+25822816 | Msa1186830:CDS |
| CAAAGGAGGGAAAATGTTTG+CGG | 0.484909 | 8_1:-25822189 | None:intergenic |
| TCATATGTTGGGTTACTTGA+AGG | 0.485292 | 8_1:+25822555 | Msa1186830:CDS |
| AAAGATCTCACACATATGAA+TGG | 0.486528 | 8_1:+25821893 | Msa1186830:CDS |
| TAAAGGTTTAATTCAAAATG+AGG | 0.492008 | 8_1:-25822256 | None:intergenic |
| ATTTCATCTATGGTTAACAT+AGG | 0.493382 | 8_1:-25822484 | None:intergenic |
| TGTCACTTCCTAAAGAAAAT+GGG | 0.497318 | 8_1:+25821993 | Msa1186830:CDS |
| AATTAGTGAAGAAGATAAGC+TGG | 0.503949 | 8_1:+25821943 | Msa1186830:CDS |
| ATATGAATGGAAACCAATCA+AGG | 0.508675 | 8_1:+25821906 | Msa1186830:CDS |
| ATGCAGCTTTGAGAGTATGA+AGG | 0.513604 | 8_1:+25822732 | Msa1186830:CDS |
| ATTGGACTCTTGAACTGACT+TGG | 0.530681 | 8_1:-25822371 | None:intergenic |
| GACTTGGCCAACGTAGGGAA+TGG | 0.531744 | 8_1:-25822355 | None:intergenic |
| AAATATAAATATTGGGTTAG+GGG | 0.550368 | 8_1:-25822016 | None:intergenic |
| ATTTCCTTTCACTCAAGAAG+AGG | 0.550723 | 8_1:+25822675 | Msa1186830:CDS |
| TGTAATGGGATAAGTGCGTA+TGG | 0.555112 | 8_1:+25822520 | Msa1186830:CDS |
| AAAATGTTTGCGGTTAACAA+TGG | 0.564835 | 8_1:-25822179 | None:intergenic |
| TGCAGCTTTGAGAGTATGAA+GGG | 0.566275 | 8_1:+25822733 | Msa1186830:CDS |
| AAATGAGGCACTAATTCATG+TGG | 0.572595 | 8_1:-25822241 | None:intergenic |
| GAACTGACTTGGCCAACGTA+GGG | 0.577821 | 8_1:-25822360 | None:intergenic |
| TGAGAGTATGAAGGGATCGA+AGG | 0.580230 | 8_1:+25822741 | Msa1186830:CDS |
| GGATGGTCATTCTCAAAGGA+GGG | 0.580828 | 8_1:-25822202 | None:intergenic |
| TATGAATGGAAACCAATCAA+GGG | 0.586784 | 8_1:+25821907 | Msa1186830:CDS |
| GTTAACAATGGCATATGTAA+GGG | 0.587278 | 8_1:-25822167 | None:intergenic |
| GAGAGTATGAAGGGATCGAA+GGG | 0.587874 | 8_1:+25822742 | Msa1186830:CDS |
| CCCAACATATGATCCCAAAA+CGG | 0.591413 | 8_1:-25822544 | None:intergenic |
| TAATGGATGGTCATTCTCAA+AGG | 0.594736 | 8_1:-25822206 | None:intergenic |
| TGGATGGTCATTCTCAAAGG+AGG | 0.596431 | 8_1:-25822203 | None:intergenic |
| ACACCTTCCATTCCCTACGT+TGG | 0.610653 | 8_1:+25822348 | Msa1186830:CDS |
| TGGCCAACGTAGGGAATGGA+AGG | 0.616324 | 8_1:-25822351 | None:intergenic |
| TGCCAAAATCTGGCACCACA+TGG | 0.617416 | 8_1:+25822137 | Msa1186830:CDS |
| TGTGGATTGAATGCAAGTAA+TGG | 0.622386 | 8_1:-25822223 | None:intergenic |
| TATCAACTATTATTGAACCA+AGG | 0.628864 | 8_1:+25822314 | Msa1186830:CDS |
| TCAAACCTATCATTTAAAGG+TGG | 0.644581 | 8_1:+25822904 | Msa1186830:CDS |
| ATGAATGGAAACCAATCAAG+GGG | 0.645694 | 8_1:+25821908 | Msa1186830:CDS |
| AGAAGAGGAAAATAATGGAG+TGG | 0.649746 | 8_1:+25822690 | Msa1186830:CDS |
| TGAACTGACTTGGCCAACGT+AGG | 0.669756 | 8_1:-25822361 | None:intergenic |
| GATTGAATGCAAGTAATGGA+TGG | 0.685646 | 8_1:-25822219 | None:intergenic |
| TGTAAGGGCAGACAACCATG+TGG | 0.759668 | 8_1:-25822152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATGATAAAAATATAAATAT+TGG | - | chr8_1:25822027-25822046 | None:intergenic | 10.0% |
| !!! | CAATATTTATATTTTTATCA+TGG | + | chr8_1:25822025-25822044 | Msa1186830:CDS | 10.0% |
| !!! | TATATAAATTATTTTGCAAT+TGG | - | chr8_1:25822392-25822411 | None:intergenic | 10.0% |
| !!! | ATTTTTGAAAAATATTGTAA+TGG | + | chr8_1:25822505-25822524 | Msa1186830:CDS | 10.0% |
| !!! | TTTTTGAAAAATATTGTAAT+GGG | + | chr8_1:25822506-25822525 | Msa1186830:CDS | 10.0% |
| !! | CATGATAAAAATATAAATAT+TGG | - | chr8_1:25822027-25822046 | None:intergenic | 10.0% |
| !!! | CAATATTTATATTTTTATCA+TGG | + | chr8_1:25822025-25822044 | Msa1186830:CDS | 10.0% |
| !!! | TATATAAATTATTTTGCAAT+TGG | - | chr8_1:25822392-25822411 | None:intergenic | 10.0% |
| !!! | ATTTTTGAAAAATATTGTAA+TGG | + | chr8_1:25822505-25822524 | Msa1186830:CDS | 10.0% |
| !!! | TTTTTGAAAAATATTGTAAT+GGG | + | chr8_1:25822506-25822525 | Msa1186830:CDS | 10.0% |
| !! | AAAATATAAATATTGGGTTA+GGG | - | chr8_1:25822020-25822039 | None:intergenic | 15.0% |
| !! | AAAAATATAAATATTGGGTT+AGG | - | chr8_1:25822021-25822040 | None:intergenic | 15.0% |
| !!! | TATATTTTTATCATGGATTT+TGG | + | chr8_1:25822032-25822051 | Msa1186830:CDS | 15.0% |
| !! | GCAAAATAATTTATATATGT+AGG | + | chr8_1:25822395-25822414 | Msa1186830:CDS | 15.0% |
| !!! | TTTTTCAAAAATTTCATCTA+TGG | - | chr8_1:25822497-25822516 | None:intergenic | 15.0% |
| !! | TTCAAGAATAAAATCTTATT+AGG | - | chr8_1:25822595-25822614 | None:intergenic | 15.0% |
| !! | AAAATATAAATATTGGGTTA+GGG | - | chr8_1:25822020-25822039 | None:intergenic | 15.0% |
| !! | AAAAATATAAATATTGGGTT+AGG | - | chr8_1:25822021-25822040 | None:intergenic | 15.0% |
| !!! | TATATTTTTATCATGGATTT+TGG | + | chr8_1:25822032-25822051 | Msa1186830:CDS | 15.0% |
| !! | GCAAAATAATTTATATATGT+AGG | + | chr8_1:25822395-25822414 | Msa1186830:CDS | 15.0% |
| !!! | TTTTTCAAAAATTTCATCTA+TGG | - | chr8_1:25822497-25822516 | None:intergenic | 15.0% |
| !! | TTCAAGAATAAAATCTTATT+AGG | - | chr8_1:25822595-25822614 | None:intergenic | 15.0% |
| !!! | AAATATAAATATTGGGTTAG+GGG | - | chr8_1:25822019-25822038 | None:intergenic | 20.0% |
| !! | TAAAGGTTTAATTCAAAATG+AGG | - | chr8_1:25822259-25822278 | None:intergenic | 20.0% |
| !!! | CATTTTGAATTAAACCTTTA+TGG | + | chr8_1:25822259-25822278 | Msa1186830:CDS | 20.0% |
| !! | GAAAATTAACATCTTCTTTA+AGG | - | chr8_1:25822627-25822646 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTTCTTTCGAAA+GGG | + | chr8_1:25822799-25822818 | Msa1186830:CDS | 20.0% |
| !!! | GATAATTTTTCTATCATTGA+AGG | - | chr8_1:25822856-25822875 | None:intergenic | 20.0% |
| !!! | TAATTTTTCTTCTATGACTT+TGG | - | chr8_1:25822878-25822897 | None:intergenic | 20.0% |
| !!! | AAATATAAATATTGGGTTAG+GGG | - | chr8_1:25822019-25822038 | None:intergenic | 20.0% |
| !! | TAAAGGTTTAATTCAAAATG+AGG | - | chr8_1:25822259-25822278 | None:intergenic | 20.0% |
| !!! | CATTTTGAATTAAACCTTTA+TGG | + | chr8_1:25822259-25822278 | Msa1186830:CDS | 20.0% |
| !! | GAAAATTAACATCTTCTTTA+AGG | - | chr8_1:25822627-25822646 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTTCTTTCGAAA+GGG | + | chr8_1:25822799-25822818 | Msa1186830:CDS | 20.0% |
| !!! | GATAATTTTTCTATCATTGA+AGG | - | chr8_1:25822856-25822875 | None:intergenic | 20.0% |
| !!! | TAATTTTTCTTCTATGACTT+TGG | - | chr8_1:25822878-25822897 | None:intergenic | 20.0% |
| ! | TTGGTTCAATAATAGTTGAT+AGG | - | chr8_1:25822315-25822334 | None:intergenic | 25.0% |
| ! | TATCAACTATTATTGAACCA+AGG | + | chr8_1:25822314-25822333 | Msa1186830:CDS | 25.0% |
| ! | ATGACACAAATGTATCAAAT+TGG | - | chr8_1:25822423-25822442 | None:intergenic | 25.0% |
| ! | TTGATACATTTGTGTCATAT+TGG | + | chr8_1:25822425-25822444 | Msa1186830:CDS | 25.0% |
| ! | ATTTCATCTATGGTTAACAT+AGG | - | chr8_1:25822487-25822506 | None:intergenic | 25.0% |
| !! | GAAAAAGTTTTTCTTTCGAA+AGG | + | chr8_1:25822798-25822817 | Msa1186830:CDS | 25.0% |
| ! | GAATCAAACCTATCATTTAA+AGG | + | chr8_1:25822901-25822920 | Msa1186830:CDS | 25.0% |
| ! | TTGGTTCAATAATAGTTGAT+AGG | - | chr8_1:25822315-25822334 | None:intergenic | 25.0% |
| ! | TATCAACTATTATTGAACCA+AGG | + | chr8_1:25822314-25822333 | Msa1186830:CDS | 25.0% |
| ! | ATGACACAAATGTATCAAAT+TGG | - | chr8_1:25822423-25822442 | None:intergenic | 25.0% |
| ! | TTGATACATTTGTGTCATAT+TGG | + | chr8_1:25822425-25822444 | Msa1186830:CDS | 25.0% |
| ! | ATTTCATCTATGGTTAACAT+AGG | - | chr8_1:25822487-25822506 | None:intergenic | 25.0% |
| !! | GAAAAAGTTTTTCTTTCGAA+AGG | + | chr8_1:25822798-25822817 | Msa1186830:CDS | 25.0% |
| ! | GAATCAAACCTATCATTTAA+AGG | + | chr8_1:25822901-25822920 | Msa1186830:CDS | 25.0% |
| AAAGATCTCACACATATGAA+TGG | + | chr8_1:25821893-25821912 | Msa1186830:CDS | 30.0% | |
| ATATGAATGGAAACCAATCA+AGG | + | chr8_1:25821906-25821925 | Msa1186830:CDS | 30.0% | |
| TATGAATGGAAACCAATCAA+GGG | + | chr8_1:25821907-25821926 | Msa1186830:CDS | 30.0% | |
| AATTAGTGAAGAAGATAAGC+TGG | + | chr8_1:25821943-25821962 | Msa1186830:CDS | 30.0% | |
| ! | TTGTCACTTCCTAAAGAAAA+TGG | + | chr8_1:25821992-25822011 | Msa1186830:CDS | 30.0% |
| ! | TGTCACTTCCTAAAGAAAAT+GGG | + | chr8_1:25821993-25822012 | Msa1186830:CDS | 30.0% |
| !! | ATTGATTTGATGAGAGTTGA+TGG | - | chr8_1:25822061-25822080 | None:intergenic | 30.0% |
| GTTAACAATGGCATATGTAA+GGG | - | chr8_1:25822170-25822189 | None:intergenic | 30.0% | |
| AAAATGTTTGCGGTTAACAA+TGG | - | chr8_1:25822182-25822201 | None:intergenic | 30.0% | |
| AACCTTTATGGTGATAGAAA+TGG | + | chr8_1:25822271-25822290 | Msa1186830:CDS | 30.0% | |
| AAATGGTCATCATTCTCAAA+TGG | + | chr8_1:25822288-25822307 | Msa1186830:CDS | 30.0% | |
| AAAAGAATTGCAGAGTTTGT+GGG | + | chr8_1:25822652-25822671 | Msa1186830:CDS | 30.0% | |
| ACTCAAGAAGAGGAAAATAA+TGG | + | chr8_1:25822685-25822704 | Msa1186830:CDS | 30.0% | |
| TCAAACCTATCATTTAAAGG+TGG | + | chr8_1:25822904-25822923 | Msa1186830:CDS | 30.0% | |
| AAAGATCTCACACATATGAA+TGG | + | chr8_1:25821893-25821912 | Msa1186830:CDS | 30.0% | |
| ATATGAATGGAAACCAATCA+AGG | + | chr8_1:25821906-25821925 | Msa1186830:CDS | 30.0% | |
| TATGAATGGAAACCAATCAA+GGG | + | chr8_1:25821907-25821926 | Msa1186830:CDS | 30.0% | |
| AATTAGTGAAGAAGATAAGC+TGG | + | chr8_1:25821943-25821962 | Msa1186830:CDS | 30.0% | |
| ! | TTGTCACTTCCTAAAGAAAA+TGG | + | chr8_1:25821992-25822011 | Msa1186830:CDS | 30.0% |
| ! | TGTCACTTCCTAAAGAAAAT+GGG | + | chr8_1:25821993-25822012 | Msa1186830:CDS | 30.0% |
| !! | ATTGATTTGATGAGAGTTGA+TGG | - | chr8_1:25822061-25822080 | None:intergenic | 30.0% |
| GTTAACAATGGCATATGTAA+GGG | - | chr8_1:25822170-25822189 | None:intergenic | 30.0% | |
| AAAATGTTTGCGGTTAACAA+TGG | - | chr8_1:25822182-25822201 | None:intergenic | 30.0% | |
| AACCTTTATGGTGATAGAAA+TGG | + | chr8_1:25822271-25822290 | Msa1186830:CDS | 30.0% | |
| AAATGGTCATCATTCTCAAA+TGG | + | chr8_1:25822288-25822307 | Msa1186830:CDS | 30.0% | |
| AAAAGAATTGCAGAGTTTGT+GGG | + | chr8_1:25822652-25822671 | Msa1186830:CDS | 30.0% | |
| ACTCAAGAAGAGGAAAATAA+TGG | + | chr8_1:25822685-25822704 | Msa1186830:CDS | 30.0% | |
| TCAAACCTATCATTTAAAGG+TGG | + | chr8_1:25822904-25822923 | Msa1186830:CDS | 30.0% | |
| ATGAATGGAAACCAATCAAG+GGG | + | chr8_1:25821908-25821927 | Msa1186830:CDS | 35.0% | |
| GGTTAACAATGGCATATGTA+AGG | - | chr8_1:25822171-25822190 | None:intergenic | 35.0% | |
| ! | TAATGGATGGTCATTCTCAA+AGG | - | chr8_1:25822209-25822228 | None:intergenic | 35.0% |
| ! | GATTGAATGCAAGTAATGGA+TGG | - | chr8_1:25822222-25822241 | None:intergenic | 35.0% |
| ! | TGTGGATTGAATGCAAGTAA+TGG | - | chr8_1:25822226-25822245 | None:intergenic | 35.0% |
| ! | AAATGAGGCACTAATTCATG+TGG | - | chr8_1:25822244-25822263 | None:intergenic | 35.0% |
| GACCATTTCTATCACCATAA+AGG | - | chr8_1:25822276-25822295 | None:intergenic | 35.0% | |
| TCATATGTTGGGTTACTTGA+AGG | + | chr8_1:25822555-25822574 | Msa1186830:CDS | 35.0% | |
| ! | CAAACTCTGCAATTCTTTTG+AGG | - | chr8_1:25822651-25822670 | None:intergenic | 35.0% |
| CAAAAGAATTGCAGAGTTTG+TGG | + | chr8_1:25822651-25822670 | Msa1186830:CDS | 35.0% | |
| ATTTCCTTTCACTCAAGAAG+AGG | + | chr8_1:25822675-25822694 | Msa1186830:CDS | 35.0% | |
| ! | TTTTCCTCTTCTTGAGTGAA+AGG | - | chr8_1:25822682-25822701 | None:intergenic | 35.0% |
| ! | AGAAGAGGAAAATAATGGAG+TGG | + | chr8_1:25822690-25822709 | Msa1186830:CDS | 35.0% |
| TTCTTTCGAAAGGGAGAAAT+AGG | + | chr8_1:25822808-25822827 | Msa1186830:CDS | 35.0% | |
| AAAGGGAGAAATAGGAGATT+GGG | + | chr8_1:25822816-25822835 | Msa1186830:CDS | 35.0% | |
| ATGAATGGAAACCAATCAAG+GGG | + | chr8_1:25821908-25821927 | Msa1186830:CDS | 35.0% | |
| GGTTAACAATGGCATATGTA+AGG | - | chr8_1:25822171-25822190 | None:intergenic | 35.0% | |
| ! | TAATGGATGGTCATTCTCAA+AGG | - | chr8_1:25822209-25822228 | None:intergenic | 35.0% |
| ! | GATTGAATGCAAGTAATGGA+TGG | - | chr8_1:25822222-25822241 | None:intergenic | 35.0% |
| ! | TGTGGATTGAATGCAAGTAA+TGG | - | chr8_1:25822226-25822245 | None:intergenic | 35.0% |
| ! | AAATGAGGCACTAATTCATG+TGG | - | chr8_1:25822244-25822263 | None:intergenic | 35.0% |
| GACCATTTCTATCACCATAA+AGG | - | chr8_1:25822276-25822295 | None:intergenic | 35.0% | |
| TCATATGTTGGGTTACTTGA+AGG | + | chr8_1:25822555-25822574 | Msa1186830:CDS | 35.0% | |
| ! | CAAACTCTGCAATTCTTTTG+AGG | - | chr8_1:25822651-25822670 | None:intergenic | 35.0% |
| CAAAAGAATTGCAGAGTTTG+TGG | + | chr8_1:25822651-25822670 | Msa1186830:CDS | 35.0% | |
| ATTTCCTTTCACTCAAGAAG+AGG | + | chr8_1:25822675-25822694 | Msa1186830:CDS | 35.0% | |
| ! | TTTTCCTCTTCTTGAGTGAA+AGG | - | chr8_1:25822682-25822701 | None:intergenic | 35.0% |
| ! | AGAAGAGGAAAATAATGGAG+TGG | + | chr8_1:25822690-25822709 | Msa1186830:CDS | 35.0% |
| TTCTTTCGAAAGGGAGAAAT+AGG | + | chr8_1:25822808-25822827 | Msa1186830:CDS | 35.0% | |
| AAAGGGAGAAATAGGAGATT+GGG | + | chr8_1:25822816-25822835 | Msa1186830:CDS | 35.0% | |
| TTTCTTGTTCACCCCTTGAT+TGG | - | chr8_1:25821922-25821941 | None:intergenic | 40.0% | |
| CAAAGGAGGGAAAATGTTTG+CGG | - | chr8_1:25822192-25822211 | None:intergenic | 40.0% | |
| AGGTGTGTTACAAAAAGCCT+TGG | - | chr8_1:25822334-25822353 | None:intergenic | 40.0% | |
| ATTGGACTCTTGAACTGACT+TGG | - | chr8_1:25822374-25822393 | None:intergenic | 40.0% | |
| ! | TGTAATGGGATAAGTGCGTA+TGG | + | chr8_1:25822520-25822539 | Msa1186830:CDS | 40.0% |
| !!! | ACCGTTTTGGGATCATATGT+TGG | + | chr8_1:25822543-25822562 | Msa1186830:CDS | 40.0% |
| CCCAACATATGATCCCAAAA+CGG | - | chr8_1:25822547-25822566 | None:intergenic | 40.0% | |
| !!! | CCGTTTTGGGATCATATGTT+GGG | + | chr8_1:25822544-25822563 | Msa1186830:CDS | 40.0% |
| !! | ATGCAGCTTTGAGAGTATGA+AGG | + | chr8_1:25822732-25822751 | Msa1186830:CDS | 40.0% |
| !! | TGCAGCTTTGAGAGTATGAA+GGG | + | chr8_1:25822733-25822752 | Msa1186830:CDS | 40.0% |
| GAAAGGGAGAAATAGGAGAT+TGG | + | chr8_1:25822815-25822834 | Msa1186830:CDS | 40.0% | |
| AAGGGCCACCTTTAAATGAT+AGG | - | chr8_1:25822912-25822931 | None:intergenic | 40.0% | |
| TTTCTTGTTCACCCCTTGAT+TGG | - | chr8_1:25821922-25821941 | None:intergenic | 40.0% | |
| CAAAGGAGGGAAAATGTTTG+CGG | - | chr8_1:25822192-25822211 | None:intergenic | 40.0% | |
| AGGTGTGTTACAAAAAGCCT+TGG | - | chr8_1:25822334-25822353 | None:intergenic | 40.0% | |
| ATTGGACTCTTGAACTGACT+TGG | - | chr8_1:25822374-25822393 | None:intergenic | 40.0% | |
| ! | TGTAATGGGATAAGTGCGTA+TGG | + | chr8_1:25822520-25822539 | Msa1186830:CDS | 40.0% |
| !!! | ACCGTTTTGGGATCATATGT+TGG | + | chr8_1:25822543-25822562 | Msa1186830:CDS | 40.0% |
| CCCAACATATGATCCCAAAA+CGG | - | chr8_1:25822547-25822566 | None:intergenic | 40.0% | |
| !!! | CCGTTTTGGGATCATATGTT+GGG | + | chr8_1:25822544-25822563 | Msa1186830:CDS | 40.0% |
| !! | ATGCAGCTTTGAGAGTATGA+AGG | + | chr8_1:25822732-25822751 | Msa1186830:CDS | 40.0% |
| !! | TGCAGCTTTGAGAGTATGAA+GGG | + | chr8_1:25822733-25822752 | Msa1186830:CDS | 40.0% |
| GAAAGGGAGAAATAGGAGAT+TGG | + | chr8_1:25822815-25822834 | Msa1186830:CDS | 40.0% | |
| AAGGGCCACCTTTAAATGAT+AGG | - | chr8_1:25822912-25822931 | None:intergenic | 40.0% | |
| ! | GTTAGGGGCCCATTTTCTTT+AGG | - | chr8_1:25822004-25822023 | None:intergenic | 45.0% |
| !! | AACCATGTGGTGCCAGATTT+TGG | - | chr8_1:25822142-25822161 | None:intergenic | 45.0% |
| GGATGGTCATTCTCAAAGGA+GGG | - | chr8_1:25822205-25822224 | None:intergenic | 45.0% | |
| TGGATGGTCATTCTCAAAGG+AGG | - | chr8_1:25822206-25822225 | None:intergenic | 45.0% | |
| ! | TAAGTGCGTATGGACCGTTT+TGG | + | chr8_1:25822530-25822549 | Msa1186830:CDS | 45.0% |
| ! | AAGTGCGTATGGACCGTTTT+GGG | + | chr8_1:25822531-25822550 | Msa1186830:CDS | 45.0% |
| ! | TGAGAGTATGAAGGGATCGA+AGG | + | chr8_1:25822741-25822760 | Msa1186830:CDS | 45.0% |
| ! | GAGAGTATGAAGGGATCGAA+GGG | + | chr8_1:25822742-25822761 | Msa1186830:CDS | 45.0% |
| GGATCGAAGGGAAATCAATC+TGG | + | chr8_1:25822754-25822773 | Msa1186830:CDS | 45.0% | |
| ! | GTTAGGGGCCCATTTTCTTT+AGG | - | chr8_1:25822004-25822023 | None:intergenic | 45.0% |
| !! | AACCATGTGGTGCCAGATTT+TGG | - | chr8_1:25822142-25822161 | None:intergenic | 45.0% |
| GGATGGTCATTCTCAAAGGA+GGG | - | chr8_1:25822205-25822224 | None:intergenic | 45.0% | |
| TGGATGGTCATTCTCAAAGG+AGG | - | chr8_1:25822206-25822225 | None:intergenic | 45.0% | |
| ! | TAAGTGCGTATGGACCGTTT+TGG | + | chr8_1:25822530-25822549 | Msa1186830:CDS | 45.0% |
| ! | AAGTGCGTATGGACCGTTTT+GGG | + | chr8_1:25822531-25822550 | Msa1186830:CDS | 45.0% |
| ! | TGAGAGTATGAAGGGATCGA+AGG | + | chr8_1:25822741-25822760 | Msa1186830:CDS | 45.0% |
| ! | GAGAGTATGAAGGGATCGAA+GGG | + | chr8_1:25822742-25822761 | Msa1186830:CDS | 45.0% |
| GGATCGAAGGGAAATCAATC+TGG | + | chr8_1:25822754-25822773 | Msa1186830:CDS | 45.0% | |
| !! | ATGATAAAAATATAAATATT+GGG | - | chr8_1:25822026-25822045 | None:intergenic | 5.0% |
| !! | ATGATAAAAATATAAATATT+GGG | - | chr8_1:25822026-25822045 | None:intergenic | 5.0% |
| GTAGCCTCCATGCCAAAATC+TGG | + | chr8_1:25822127-25822146 | Msa1186830:CDS | 50.0% | |
| !! | TGTGGTGCCAGATTTTGGCA+TGG | - | chr8_1:25822137-25822156 | None:intergenic | 50.0% |
| TGCCAAAATCTGGCACCACA+TGG | + | chr8_1:25822137-25822156 | Msa1186830:CDS | 50.0% | |
| TGTAAGGGCAGACAACCATG+TGG | - | chr8_1:25822155-25822174 | None:intergenic | 50.0% | |
| ACACCTTCCATTCCCTACGT+TGG | + | chr8_1:25822348-25822367 | Msa1186830:CDS | 50.0% | |
| !! | GAACTGACTTGGCCAACGTA+GGG | - | chr8_1:25822363-25822382 | None:intergenic | 50.0% |
| !! | TGAACTGACTTGGCCAACGT+AGG | - | chr8_1:25822364-25822383 | None:intergenic | 50.0% |
| GTAGCCTCCATGCCAAAATC+TGG | + | chr8_1:25822127-25822146 | Msa1186830:CDS | 50.0% | |
| !! | TGTGGTGCCAGATTTTGGCA+TGG | - | chr8_1:25822137-25822156 | None:intergenic | 50.0% |
| TGCCAAAATCTGGCACCACA+TGG | + | chr8_1:25822137-25822156 | Msa1186830:CDS | 50.0% | |
| TGTAAGGGCAGACAACCATG+TGG | - | chr8_1:25822155-25822174 | None:intergenic | 50.0% | |
| ACACCTTCCATTCCCTACGT+TGG | + | chr8_1:25822348-25822367 | Msa1186830:CDS | 50.0% | |
| !! | GAACTGACTTGGCCAACGTA+GGG | - | chr8_1:25822363-25822382 | None:intergenic | 50.0% |
| !! | TGAACTGACTTGGCCAACGT+AGG | - | chr8_1:25822364-25822383 | None:intergenic | 50.0% |
| !! | GGTGCCAGATTTTGGCATGG+AGG | - | chr8_1:25822134-25822153 | None:intergenic | 55.0% |
| TGGCCAACGTAGGGAATGGA+AGG | - | chr8_1:25822354-25822373 | None:intergenic | 55.0% | |
| GACTTGGCCAACGTAGGGAA+TGG | - | chr8_1:25822358-25822377 | None:intergenic | 55.0% | |
| !! | GGTGCCAGATTTTGGCATGG+AGG | - | chr8_1:25822134-25822153 | None:intergenic | 55.0% |
| TGGCCAACGTAGGGAATGGA+AGG | - | chr8_1:25822354-25822373 | None:intergenic | 55.0% | |
| GACTTGGCCAACGTAGGGAA+TGG | - | chr8_1:25822358-25822377 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 25821884 | 25822933 | 25821884 | ID=Msa1186830;Name=Msa1186830 |
| chr8_1 | mRNA | 25821884 | 25822933 | 25821884 | ID=Msa1186830-mRNA-1;Parent=Msa1186830;Name=Msa1186830-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|-1|0|1|-1|1|1|0|349 |
| chr8_1 | exon | 25821884 | 25822933 | 25821884 | ID=Msa1186830-mRNA-1:exon:9205;Parent=Msa1186830-mRNA-1 |
| chr8_1 | CDS | 25821884 | 25822933 | 25821884 | ID=Msa1186830-mRNA-1:cds;Parent=Msa1186830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
