Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183850 | Msa0600680 | 0.803799 | 2.933514e-49 | -8.615850e-47 |
| Msa0189520 | Msa0600680 | 0.801650 | 8.148084e-49 | -8.615850e-47 |
| Msa0534900 | Msa0600680 | 0.821660 | 3.587590e-53 | -8.615850e-47 |
| Msa0600680 | Msa0669720 | 0.833035 | 6.718291e-56 | -8.615850e-47 |
| Msa0600680 | Msa0944610 | 0.803884 | 2.816679e-49 | -8.615850e-47 |
| Msa0600680 | Msa1243300 | 0.872560 | 2.894563e-67 | -8.615850e-47 |
| Msa0600680 | Msa1296830 | 0.804648 | 1.952486e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTACTTCTTCTCTTTCA+TGG | 0.301626 | 4_2:-42477572 | None:intergenic |
| TGCTGCTGCAACTTCTGTTT+CGG | 0.361471 | 4_2:+42474851 | None:intergenic |
| ATTGCCTTTAGGGTCCATAT+TGG | 0.409955 | 4_2:+42474774 | None:intergenic |
| TGCAGCGCTGGTTGCAATGA+AGG | 0.439173 | 4_2:+42477530 | None:intergenic |
| AGAAGGAGTCTACTATTTCA+AGG | 0.491554 | 4_2:-42477474 | Msa0600680:intron |
| CAGTGGTCTGAAAATTGAAA+AGG | 0.521123 | 4_2:-42477509 | Msa0600680:CDS |
| CATTGCAACCAGCGCTGCAG+TGG | 0.543575 | 4_2:-42477526 | Msa0600680:CDS |
| AAAGGACAGCAAGAAGAAGA+AGG | 0.546280 | 4_2:-42477491 | Msa0600680:CDS |
| AACGCCAATATGGACCCTAA+AGG | 0.590616 | 4_2:-42474778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTGTTATTTATTTTTC+TGG | - | chr4_2:42476273-42476292 | Msa0600680:intron | 10.0% |
| !! | ATAAATAAATTAAATTACTC+TGG | - | chr4_2:42477172-42477191 | Msa0600680:intron | 10.0% |
| !! | TAGAGAAAAGAAAAAAAAAA+AGG | + | chr4_2:42475146-42475165 | None:intergenic | 15.0% |
| !!! | TCTTATTGTTAATTTTCTTT+TGG | - | chr4_2:42475344-42475363 | Msa0600680:intron | 15.0% |
| !!! | TAAGAATAATGGTTTTATAT+GGG | + | chr4_2:42475451-42475470 | None:intergenic | 15.0% |
| !!! | ATAAGAATAATGGTTTTATA+TGG | + | chr4_2:42475452-42475471 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAATAGTATTTGA+TGG | - | chr4_2:42476679-42476698 | Msa0600680:intron | 15.0% |
| !!! | TCTTTTTAATAGTATTTGAT+GGG | - | chr4_2:42476680-42476699 | Msa0600680:intron | 15.0% |
| !!! | GTTAATTTAAACTTTAAAGT+TGG | - | chr4_2:42476790-42476809 | Msa0600680:intron | 15.0% |
| !! | AAATTGATGAATGAATAATA+CGG | + | chr4_2:42477067-42477086 | None:intergenic | 15.0% |
| !! | GTATCTGATAATAAGAATAA+TGG | + | chr4_2:42475462-42475481 | None:intergenic | 20.0% |
| !!! | TATTTGTTCTTTTTTGTGTT+TGG | - | chr4_2:42476458-42476477 | Msa0600680:intron | 20.0% |
| !!! | TGCATAAATATACTACATTT+TGG | - | chr4_2:42476507-42476526 | Msa0600680:intron | 20.0% |
| !! | AATCAAATATGTTAGCTATT+TGG | + | chr4_2:42476535-42476554 | None:intergenic | 20.0% |
| !! | AAATAGCTAACATATTTGAT+TGG | - | chr4_2:42476534-42476553 | Msa0600680:intron | 20.0% |
| !! | AATAGCTAACATATTTGATT+GGG | - | chr4_2:42476535-42476554 | Msa0600680:intron | 20.0% |
| !! | AATATATCTATCTGTTTGTT+GGG | - | chr4_2:42476731-42476750 | Msa0600680:intron | 20.0% |
| !!! | TAATAACCAGATGATTTTAT+AGG | - | chr4_2:42476879-42476898 | Msa0600680:intron | 20.0% |
| !! | TTATTCATTCATCAATTTCT+TGG | - | chr4_2:42477069-42477088 | Msa0600680:intron | 20.0% |
| !!! | AGTAGTTTAACATTTTCTTA+AGG | - | chr4_2:42477263-42477282 | Msa0600680:intron | 20.0% |
| ! | CATTATCGTGAAAATTGAAA+AGG | + | chr4_2:42474924-42474943 | None:intergenic | 25.0% |
| ! | ATGATGAGATATTTGCAAAT+TGG | - | chr4_2:42475281-42475300 | Msa0600680:intron | 25.0% |
| ! | AGATACTCTTTCTTTATTGT+TGG | - | chr4_2:42475476-42475495 | Msa0600680:intron | 25.0% |
| !!! | AATGAGATGATTTTCAAGAA+TGG | - | chr4_2:42475583-42475602 | Msa0600680:intron | 25.0% |
| ! | CACTCATAAAATAGAAATGA+CGG | + | chr4_2:42475685-42475704 | None:intergenic | 25.0% |
| ! | GTTGGGCTTATAATATATTT+CGG | - | chr4_2:42476005-42476024 | Msa0600680:intron | 25.0% |
| ! | AAAATTGAAGTCTATGTTTG+AGG | - | chr4_2:42476180-42476199 | Msa0600680:intron | 25.0% |
| ! | AAATTGAAGTCTATGTTTGA+GGG | - | chr4_2:42476181-42476200 | Msa0600680:intron | 25.0% |
| !!! | TGTTAGACAAACTTTTTCTA+AGG | - | chr4_2:42476326-42476345 | Msa0600680:intron | 25.0% |
| !!! | AATATGTTTTAGACGTTCAT+AGG | + | chr4_2:42476442-42476461 | None:intergenic | 25.0% |
| ! | TAAAAAGAAAAACAGCCATA+TGG | + | chr4_2:42476668-42476687 | None:intergenic | 25.0% |
| ! | GAATATATCTATCTGTTTGT+TGG | - | chr4_2:42476730-42476749 | Msa0600680:intron | 25.0% |
| ! | AGTTATGAAGAATGTGTATA+CGG | + | chr4_2:42477014-42477033 | None:intergenic | 25.0% |
| ! | TACACATTCTTCATAACTTA+AGG | - | chr4_2:42477016-42477035 | Msa0600680:intron | 25.0% |
| AGTCTACTATTTCAAGGTAT+GGG | - | chr4_2:42474879-42474898 | Msa0600680:CDS | 30.0% | |
| AAATTGGTTGTAATCAGTGA+AGG | - | chr4_2:42475297-42475316 | Msa0600680:intron | 30.0% | |
| AATTGGTTGTAATCAGTGAA+GGG | - | chr4_2:42475298-42475317 | Msa0600680:intron | 30.0% | |
| !! | TTGGATGTTCTGTTTCTATT+TGG | - | chr4_2:42475363-42475382 | Msa0600680:intron | 30.0% |
| ! | TCTTTATTGTTGGTCTAATG+AGG | - | chr4_2:42475486-42475505 | Msa0600680:intron | 30.0% |
| ! | AAACCTTGTCTAAGCTTTTT+CGG | + | chr4_2:42475517-42475536 | None:intergenic | 30.0% |
| ! | AAAAAGCTTAGACAAGGTTT+TGG | - | chr4_2:42475517-42475536 | Msa0600680:intron | 30.0% |
| !!! | GACAAGGTTTTGGTTTAATT+TGG | - | chr4_2:42475527-42475546 | Msa0600680:intron | 30.0% |
| TAATTTGGCATGCTGTAATT+TGG | - | chr4_2:42475542-42475561 | Msa0600680:intron | 30.0% | |
| AATTTGGCATGCTGTAATTT+GGG | - | chr4_2:42475543-42475562 | Msa0600680:intron | 30.0% | |
| AGAAAATTAAGGTTCAGTCT+TGG | - | chr4_2:42475632-42475651 | Msa0600680:intron | 30.0% | |
| GAAAATTAAGGTTCAGTCTT+GGG | - | chr4_2:42475633-42475652 | Msa0600680:intron | 30.0% | |
| ! | AAATGACGGAATTTACAACT+GGG | + | chr4_2:42475671-42475690 | None:intergenic | 30.0% |
| ! | CGTCATTTCTATTTTATGAG+TGG | - | chr4_2:42475683-42475702 | Msa0600680:intron | 30.0% |
| ! | TTCTATTTTATGAGTGGTGT+TGG | - | chr4_2:42475689-42475708 | Msa0600680:intron | 30.0% |
| !! | TCTAAGTTCTGATGTTGTTT+TGG | + | chr4_2:42476138-42476157 | None:intergenic | 30.0% |
| ! | TTTAGAATGTGCTAGCATTT+AGG | - | chr4_2:42476247-42476266 | Msa0600680:intron | 30.0% |
| AGAGGTTGTGAAAAACAAAT+TGG | - | chr4_2:42476368-42476387 | Msa0600680:intron | 30.0% | |
| CTAACATATTTGATTGGGAT+TGG | - | chr4_2:42476540-42476559 | Msa0600680:intron | 30.0% | |
| AGCATGTGTATCTTTACTTA+GGG | + | chr4_2:42476604-42476623 | None:intergenic | 30.0% | |
| AAGCATGTGTATCTTTACTT+AGG | + | chr4_2:42476605-42476624 | None:intergenic | 30.0% | |
| ! | ACACATGCTTTTACATTTGT+AGG | - | chr4_2:42476615-42476634 | Msa0600680:intron | 30.0% |
| TCTCTTCATTATGTATCTCT+TGG | - | chr4_2:42476768-42476787 | Msa0600680:intron | 30.0% | |
| TTGGAACCTATAAAATCATC+TGG | + | chr4_2:42476888-42476907 | None:intergenic | 30.0% | |
| ! | TAAAGGATGAGTCAAGATTT+TGG | - | chr4_2:42476938-42476957 | Msa0600680:intron | 30.0% |
| !!! | GATTTTGGTTAAGAATTCCA+AGG | - | chr4_2:42476953-42476972 | Msa0600680:intron | 30.0% |
| !! | TTAACAACCTTAAAAGCACT+TGG | + | chr4_2:42477304-42477323 | None:intergenic | 30.0% |
| !!! | TTTTTTTGGTGGTTTAGGTA+TGG | + | chr4_2:42477551-42477570 | None:intergenic | 30.0% |
| CAGTGGTCTGAAAATTGAAA+AGG | - | chr4_2:42474838-42474857 | Msa0600680:CDS | 35.0% | |
| AGAAGGAGTCTACTATTTCA+AGG | - | chr4_2:42474873-42474892 | Msa0600680:CDS | 35.0% | |
| GAGTCTACTATTTCAAGGTA+TGG | - | chr4_2:42474878-42474897 | Msa0600680:CDS | 35.0% | |
| ATTGGTTGTAATCAGTGAAG+GGG | - | chr4_2:42475299-42475318 | Msa0600680:intron | 35.0% | |
| TGGGATGAACGAAATTCTAA+CGG | + | chr4_2:42475432-42475451 | None:intergenic | 35.0% | |
| ATGCTGTAATTTGGGTGATT+TGG | - | chr4_2:42475551-42475570 | Msa0600680:intron | 35.0% | |
| ! | TGTAATTTGGGTGATTTGGA+AGG | - | chr4_2:42475555-42475574 | Msa0600680:intron | 35.0% |
| TGTAACTGATGTAGAGGATA+TGG | - | chr4_2:42475606-42475625 | Msa0600680:intron | 35.0% | |
| ! | GGATATGGTGGAGAAAATTA+AGG | - | chr4_2:42475621-42475640 | Msa0600680:intron | 35.0% |
| ! | GAAATGACGGAATTTACAAC+TGG | + | chr4_2:42475672-42475691 | None:intergenic | 35.0% |
| TCGTCTTAGTTGTTATGTGT+TGG | - | chr4_2:42475746-42475765 | Msa0600680:intron | 35.0% | |
| CGTCTTAGTTGTTATGTGTT+GGG | - | chr4_2:42475747-42475766 | Msa0600680:intron | 35.0% | |
| !! | CTGTTAGTTTGTTTCTGAGA+CGG | - | chr4_2:42475797-42475816 | Msa0600680:intron | 35.0% |
| !! | TGTTAGTTTGTTTCTGAGAC+GGG | - | chr4_2:42475798-42475817 | Msa0600680:intron | 35.0% |
| !!! | TTATAGGCAGCTGTTTTTAG+TGG | - | chr4_2:42475859-42475878 | Msa0600680:intron | 35.0% |
| ! | CTAATTGCTTTCTGGTGTAT+TGG | - | chr4_2:42475935-42475954 | Msa0600680:intron | 35.0% |
| !! | GCTTTGTTTGGTACTTGAAT+TGG | + | chr4_2:42476071-42476090 | None:intergenic | 35.0% |
| TTGTGCAAAGAATGTGGTAA+GGG | + | chr4_2:42476110-42476129 | None:intergenic | 35.0% | |
| ATTGTGCAAAGAATGTGGTA+AGG | + | chr4_2:42476111-42476130 | None:intergenic | 35.0% | |
| GACAAATTGTGCAAAGAATG+TGG | + | chr4_2:42476116-42476135 | None:intergenic | 35.0% | |
| ATTGAGGACCAAATTTGAGA+AGG | - | chr4_2:42476204-42476223 | Msa0600680:intron | 35.0% | |
| CTACGTTTCCTTCTCAAATT+TGG | + | chr4_2:42476215-42476234 | None:intergenic | 35.0% | |
| !! | TTTGTTTTTCACAACCTCTC+TGG | + | chr4_2:42476367-42476386 | None:intergenic | 35.0% |
| GCATGTGTATCTTTACTTAG+GGG | + | chr4_2:42476603-42476622 | None:intergenic | 35.0% | |
| GCTTACTTATTCTCTCCATA+TGG | - | chr4_2:42476650-42476669 | Msa0600680:intron | 35.0% | |
| TAGTATTTGATGGGACTGTT+TGG | - | chr4_2:42476689-42476708 | Msa0600680:intron | 35.0% | |
| ! | ATCTGTTTGTTGGGTATGTT+TGG | - | chr4_2:42476740-42476759 | Msa0600680:intron | 35.0% |
| TTTGTTGGGTATGTTTGGTT+TGG | - | chr4_2:42476745-42476764 | Msa0600680:intron | 35.0% | |
| !! | CTTTCAAGTTCTCTGAGTTA+AGG | + | chr4_2:42477044-42477063 | None:intergenic | 35.0% |
| ! | TGAAATGCCAAGTGCTTTTA+AGG | - | chr4_2:42477294-42477313 | Msa0600680:intron | 35.0% |
| !! | TTGAAGTGTGTACTGATTCT+AGG | - | chr4_2:42477358-42477377 | Msa0600680:intron | 35.0% |
| AAAGGACAGCAAGAAGAAGA+AGG | - | chr4_2:42474856-42474875 | Msa0600680:CDS | 40.0% | |
| GAAACACATAGATCAAGACG+AGG | + | chr4_2:42475043-42475062 | None:intergenic | 40.0% | |
| !! | GTGTTCTTGTGTTGCTTTCT+TGG | - | chr4_2:42475085-42475104 | Msa0600680:intron | 40.0% |
| !! | TTCTTGTGTTGCTTTCTTGG+AGG | - | chr4_2:42475088-42475107 | Msa0600680:intron | 40.0% |
| GATGAACGAAATTCTAACGG+TGG | + | chr4_2:42475429-42475448 | None:intergenic | 40.0% | |
| AGACCGAAAAAGCTTAGACA+AGG | - | chr4_2:42475511-42475530 | Msa0600680:intron | 40.0% | |
| GAATGGTGTAACTGATGTAG+AGG | - | chr4_2:42475600-42475619 | Msa0600680:intron | 40.0% | |
| AACTGATGTAGAGGATATGG+TGG | - | chr4_2:42475609-42475628 | Msa0600680:intron | 40.0% | |
| TTAAGGTTCAGTCTTGGGTT+TGG | - | chr4_2:42475638-42475657 | Msa0600680:intron | 40.0% | |
| !! | GTTAGTTTGTTTCTGAGACG+GGG | - | chr4_2:42475799-42475818 | Msa0600680:intron | 40.0% |
| !! | TTAGTTTGTTTCTGAGACGG+GGG | - | chr4_2:42475800-42475819 | Msa0600680:intron | 40.0% |
| GCCTATAAACACAACCAACA+GGG | + | chr4_2:42475847-42475866 | None:intergenic | 40.0% | |
| TGCCTATAAACACAACCAAC+AGG | + | chr4_2:42475848-42475867 | None:intergenic | 40.0% | |
| CAAATCCACAACACCACAAA+CGG | + | chr4_2:42475914-42475933 | None:intergenic | 40.0% | |
| GGATTTGGCTAATTGCTTTC+TGG | - | chr4_2:42475927-42475946 | Msa0600680:intron | 40.0% | |
| TGCCTATCTTAAGTGGTGTT+GGG | - | chr4_2:42475988-42476007 | Msa0600680:intron | 40.0% | |
| !! | CAATCTCGGAAAGCTTTGTT+TGG | + | chr4_2:42476083-42476102 | None:intergenic | 40.0% |
| ! | GTGGTAAGGGTTTTCAATCT+CGG | + | chr4_2:42476097-42476116 | None:intergenic | 40.0% |
| AGTCTATGTTTGAGGGATTG+AGG | - | chr4_2:42476188-42476207 | Msa0600680:intron | 40.0% | |
| !!! | TTTTCTGGTTCGCTTTACTG+AGG | - | chr4_2:42476288-42476307 | Msa0600680:intron | 40.0% |
| !! | TTTCTGGTTCGCTTTACTGA+GGG | - | chr4_2:42476289-42476308 | Msa0600680:intron | 40.0% |
| ! | ACTTTCAAAGTGTTCCAGAG+AGG | - | chr4_2:42476350-42476369 | Msa0600680:intron | 40.0% |
| TGAGCATGAGATAGAAGACT+TGG | + | chr4_2:42476418-42476437 | None:intergenic | 40.0% | |
| TAGTTGTCATGTTTGCTCCT+TGG | + | chr4_2:42476973-42476992 | None:intergenic | 40.0% | |
| AATGTGTATACGGTTCACTG+AGG | + | chr4_2:42477004-42477023 | None:intergenic | 40.0% | |
| !!! | TGGCGTTTTTTTGGTGGTTT+AGG | + | chr4_2:42477556-42477575 | None:intergenic | 40.0% |
| !!! | CCATATTGGCGTTTTTTTGG+TGG | + | chr4_2:42477562-42477581 | None:intergenic | 40.0% |
| CCACCAAAAAAACGCCAATA+TGG | - | chr4_2:42477559-42477578 | Msa0600680:exon | 40.0% | |
| !!! | GGTCCATATTGGCGTTTTTT+TGG | + | chr4_2:42477565-42477584 | None:intergenic | 40.0% |
| GAACGAAATTCTAACGGTGG+CGG | + | chr4_2:42475426-42475445 | None:intergenic | 45.0% | |
| ACCGAATTAGACAATCCCCA+CGG | + | chr4_2:42475718-42475737 | None:intergenic | 45.0% | |
| AAACACAACCAACAGGGCAA+GGG | + | chr4_2:42475841-42475860 | None:intergenic | 45.0% | |
| TAAACACAACCAACAGGGCA+AGG | + | chr4_2:42475842-42475861 | None:intergenic | 45.0% | |
| ! | GCCCTGTTGGTTGTGTTTAT+AGG | - | chr4_2:42475843-42475862 | Msa0600680:intron | 45.0% |
| !!! | TAGGCAGCTGTTTTTAGTGG+TGG | - | chr4_2:42475862-42475881 | Msa0600680:intron | 45.0% |
| ACCACAAACGGTATGGAACA+GGG | + | chr4_2:42475902-42475921 | None:intergenic | 45.0% | |
| !! | CGTTTGTGGTGTTGTGGATT+TGG | - | chr4_2:42475912-42475931 | Msa0600680:intron | 45.0% |
| CCACTTAAGATAGGCAGCTA+GGG | + | chr4_2:42475984-42476003 | None:intergenic | 45.0% | |
| ACCACTTAAGATAGGCAGCT+AGG | + | chr4_2:42475985-42476004 | None:intergenic | 45.0% | |
| CTGCCTATCTTAAGTGGTGT+TGG | - | chr4_2:42475987-42476006 | Msa0600680:intron | 45.0% | |
| AGCCCAACACCACTTAAGAT+AGG | + | chr4_2:42475993-42476012 | None:intergenic | 45.0% | |
| !! | TTCTGGTTCGCTTTACTGAG+GGG | - | chr4_2:42476290-42476309 | Msa0600680:intron | 45.0% |
| ! | AGGCGCTACATGAAAGGTTT+TGG | + | chr4_2:42476907-42476926 | None:intergenic | 45.0% |
| CTTTCATGTAGCGCCTTCAA+GGG | - | chr4_2:42476911-42476930 | Msa0600680:intron | 45.0% | |
| TTTCATGTAGCGCCTTCAAG+GGG | - | chr4_2:42476912-42476931 | Msa0600680:intron | 45.0% | |
| CATCCTTTAACACCCCTTGA+AGG | + | chr4_2:42476927-42476946 | None:intergenic | 45.0% | |
| TGCTGCTGCAACTTCTGTTT+CGG | + | chr4_2:42477499-42477518 | None:intergenic | 45.0% | |
| !!! | AAATTTTTTTTATTTCAATA+TGG | + | chr4_2:42475256-42475275 | None:intergenic | 5.0% |
| CCGAATTAGACAATCCCCAC+GGG | + | chr4_2:42475717-42475736 | None:intergenic | 50.0% | |
| CCCGTGGGGATTGTCTAATT+CGG | - | chr4_2:42475714-42475733 | Msa0600680:intron | 50.0% | |
| GCGTGCAAGTAGTCTGATGT+GGG | - | chr4_2:42475769-42475788 | Msa0600680:intron | 50.0% | |
| CGTGCAAGTAGTCTGATGTG+GGG | - | chr4_2:42475770-42475789 | Msa0600680:intron | 50.0% | |
| ! | TTCTTTTCCCCTTGCCCTGT+TGG | - | chr4_2:42475830-42475849 | Msa0600680:intron | 50.0% |
| AACACAACCAACAGGGCAAG+GGG | + | chr4_2:42475840-42475859 | None:intergenic | 50.0% | |
| TCCCTGTTCCATACCGTTTG+TGG | - | chr4_2:42475898-42475917 | Msa0600680:intron | 50.0% | |
| CACCACAAACGGTATGGAAC+AGG | + | chr4_2:42475903-42475922 | None:intergenic | 50.0% | |
| CCACAACACCACAAACGGTA+TGG | + | chr4_2:42475909-42475928 | None:intergenic | 50.0% | |
| ! | CCATACCGTTTGTGGTGTTG+TGG | - | chr4_2:42475906-42475925 | Msa0600680:intron | 50.0% |
| CCCTAGCTGCCTATCTTAAG+TGG | - | chr4_2:42475981-42476000 | Msa0600680:intron | 50.0% | |
| !! | CCTTGAAGGCGCTACATGAA+AGG | + | chr4_2:42476913-42476932 | None:intergenic | 50.0% |
| CCTTTCATGTAGCGCCTTCA+AGG | - | chr4_2:42476910-42476929 | Msa0600680:intron | 50.0% | |
| ! | ATACGGTTCACTGAGGCATC+TGG | + | chr4_2:42476997-42477016 | None:intergenic | 50.0% |
| !! | TGCAGCGCTGGTTGCAATGA+AGG | + | chr4_2:42474820-42474839 | None:intergenic | 55.0% |
| ! | TTTTCAGACCACTGCAGCGC+TGG | + | chr4_2:42474832-42474851 | None:intergenic | 55.0% |
| ! | ATGAGTGGTGTTGGAACCCG+TGG | - | chr4_2:42475698-42475717 | Msa0600680:intron | 55.0% |
| ! | TGAGTGGTGTTGGAACCCGT+GGG | - | chr4_2:42475699-42475718 | Msa0600680:intron | 55.0% |
| GGCGTGCAAGTAGTCTGATG+TGG | - | chr4_2:42475768-42475787 | Msa0600680:intron | 55.0% | |
| !! | GCGCCTTCAAGGGGTGTTAA+AGG | - | chr4_2:42476921-42476940 | Msa0600680:intron | 55.0% |
| CATTGCAACCAGCGCTGCAG+TGG | - | chr4_2:42474821-42474840 | Msa0600680:CDS | 60.0% | |
| ! | GAGTGGTGTTGGAACCCGTG+GGG | - | chr4_2:42475700-42475719 | Msa0600680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 42474781 | 42477588 | 42474781 | ID=Msa0600680;Name=Msa0600680 |
| chr4_2 | mRNA | 42474781 | 42477588 | 42474781 | ID=Msa0600680-mRNA-1;Parent=Msa0600680;Name=Msa0600680-mRNA-1;_AED=0.65;_eAED=0.65;_QI=13|0|0.5|0.5|1|1|2|0|72 |
| chr4_2 | exon | 42474781 | 42474898 | 42474781 | ID=Msa0600680-mRNA-1:exon:9227;Parent=Msa0600680-mRNA-1 |
| chr4_2 | exon | 42477475 | 42477588 | 42477475 | ID=Msa0600680-mRNA-1:exon:9226;Parent=Msa0600680-mRNA-1 |
| chr4_2 | five_prime_UTR | 42477576 | 42477588 | 42477576 | ID=Msa0600680-mRNA-1:five_prime_utr;Parent=Msa0600680-mRNA-1 |
| chr4_2 | CDS | 42477475 | 42477575 | 42477475 | ID=Msa0600680-mRNA-1:cds;Parent=Msa0600680-mRNA-1 |
| chr4_2 | CDS | 42474781 | 42474898 | 42474781 | ID=Msa0600680-mRNA-1:cds;Parent=Msa0600680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
