AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1245290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245290 MtrunA17_Chr8g0357931 74.359 312 67 2 2 307 1 305 1.46e-161 472
Msa1245290 MtrunA17_Chr8g0357931 68.376 117 33 2 299 413 380 494 2.31e-33 134
Msa1245290 MtrunA17_Chr8g0358151 73.052 308 74 3 2 307 1 301 4.98e-158 454
Msa1245290 MtrunA17_Chr8g0357961 67.610 318 91 3 2 307 1 318 9.07e-149 445
Msa1245290 MtrunA17_Chr8g0357961 75.862 116 20 1 388 503 695 802 2.90e-51 187
Msa1245290 MtrunA17_Chr8g0357961 70.536 112 26 2 299 403 391 502 9.92e-39 150
Msa1245290 MtrunA17_Chr8g0357991 66.352 318 94 4 2 307 1 317 3.81e-146 439
Msa1245290 MtrunA17_Chr8g0357991 75.862 116 20 1 388 503 696 803 2.65e-51 187
Msa1245290 MtrunA17_Chr8g0357991 68.750 112 28 2 299 403 392 503 2.25e-29 122
Msa1245290 MtrunA17_Chr8g0358121 69.745 314 70 5 2 307 1 297 2.22e-145 436
Msa1245290 MtrunA17_Chr8g0358121 75.806 124 21 2 385 507 670 785 1.52e-44 167
Msa1245290 MtrunA17_Chr8g0358121 73.636 110 24 2 299 403 371 480 3.21e-33 134
Msa1245290 MtrunA17_Chr8g0358071 68.239 318 80 7 1 307 1 308 5.55e-145 435
Msa1245290 MtrunA17_Chr8g0358071 75.207 121 20 3 388 507 687 798 1.59e-48 179
Msa1245290 MtrunA17_Chr8g0358071 75.455 110 21 2 299 403 386 494 5.18e-44 166
Msa1245290 MtrunA17_Chr8g0357881 66.562 317 89 3 1 307 6 315 7.70e-144 432
Msa1245290 MtrunA17_Chr8g0357881 78.512 121 17 2 388 507 687 799 1.47e-52 190
Msa1245290 MtrunA17_Chr8g0357881 67.290 107 33 1 299 403 388 494 1.30e-25 111
Msa1245290 MtrunA17_Chr8g0358081 69.010 313 73 5 2 307 1 296 2.47e-143 431
Msa1245290 MtrunA17_Chr8g0358081 73.387 124 23 3 385 507 669 783 2.77e-49 181
Msa1245290 MtrunA17_Chr8g0358081 75.000 100 23 1 306 403 380 479 1.79e-36 144
Msa1245290 MtrunA17_Chr8g0358031 67.925 318 83 6 1 307 1 310 4.96e-142 428
Msa1245290 MtrunA17_Chr8g0358031 81.188 101 11 1 388 488 690 782 8.66e-46 171
Msa1245290 MtrunA17_Chr8g0358031 74.545 110 23 1 299 403 388 497 3.76e-43 163
Msa1245290 MtrunA17_Chr8g0357801 66.877 317 85 6 2 307 1 308 6.46e-139 414
Msa1245290 MtrunA17_Chr8g0357801 67.273 110 31 1 299 403 382 491 1.06e-32 131
Msa1245290 MtrunA17_Chr1g0191111 77.647 255 52 3 1 253 15 266 1.19e-136 395
Msa1245290 MtrunA17_Chr8g0358101 65.506 316 82 5 2 307 1 299 7.42e-136 411
Msa1245290 MtrunA17_Chr8g0358101 73.554 121 22 3 388 507 675 786 3.64e-47 175
Msa1245290 MtrunA17_Chr8g0358101 74.000 100 24 1 306 403 383 482 9.87e-34 135
Msa1245290 MtrunA17_Chr8g0358051 83.237 173 28 1 2 174 1 172 2.41e-95 286
Msa1245290 MtrunA17_Chr8g0357761 48.718 312 130 12 14 308 18 316 1.45e-77 259
Msa1245290 MtrunA17_Chr8g0357761 58.333 84 35 0 400 483 695 778 1.75e-24 107
Msa1245290 MtrunA17_Chr8g0357681 47.727 308 131 11 18 308 21 315 4.03e-77 248
Msa1245290 MtrunA17_Chr8g0357631 48.013 302 124 10 18 306 21 302 2.49e-73 247
Msa1245290 MtrunA17_Chr8g0357631 51.282 117 47 2 388 504 679 785 1.46e-26 114
Msa1245290 MtrunA17_Chr8g0357631 37.624 101 57 2 309 403 386 486 7.97e-11 64.7
Msa1245290 MtrunA17_Chr8g0357691 47.664 321 143 12 1 306 2 312 6.83e-73 246
Msa1245290 MtrunA17_Chr8g0357691 51.685 89 35 1 387 475 688 768 3.20e-22 100
Msa1245290 MtrunA17_Chr8g0357691 42.063 126 65 3 286 403 371 496 2.53e-15 79.0
Msa1245290 MtrunA17_Chr8g0357711 45.000 320 143 12 8 308 8 313 1.38e-69 238
Msa1245290 MtrunA17_Chr8g0357711 49.524 105 45 1 388 492 688 784 8.02e-25 108
Msa1245290 MtrunA17_Chr8g0357711 43.564 101 51 2 309 403 395 495 1.50e-11 67.0
Msa1245290 MtrunA17_Chr8g0357981 72.297 148 34 1 160 307 1 141 1.24e-66 226
Msa1245290 MtrunA17_Chr8g0357981 81.667 120 14 1 388 507 516 627 2.90e-58 203
Msa1245290 MtrunA17_Chr8g0357981 88.776 98 11 0 306 403 226 323 1.59e-50 182
Msa1245290 MtrunA17_Chr8g0357651 44.904 314 143 10 8 306 8 306 4.05e-65 225
Msa1245290 MtrunA17_Chr8g0357651 50.000 114 47 2 388 501 681 784 2.06e-24 107
Msa1245290 MtrunA17_Chr8g0357651 39.604 101 55 3 307 403 390 488 2.72e-13 72.8
Msa1245290 MtrunA17_Chr6g0470621 64.901 151 43 2 160 307 2 145 8.85e-62 199
Msa1245290 MtrunA17_Chr8g0357781 76.033 121 20 2 388 507 42 154 3.81e-56 184
Msa1245290 MtrunA17_Chr8g0358141 74.194 124 22 3 385 507 286 400 3.52e-52 182
Msa1245290 MtrunA17_Chr8g0358141 78.689 61 13 0 343 403 24 84 3.78e-23 101
Msa1245290 MtrunA17_Chr8g0357821 53.000 200 74 7 8 191 9 204 1.07e-51 175
Msa1245290 MtrunA17_Chr8g0358061 74.380 121 22 2 388 507 267 379 9.29e-49 172
Msa1245290 MtrunA17_Chr8g0358061 55.556 99 26 2 307 403 18 100 1.29e-22 99.8
Msa1245290 MtrunA17_Chr8g0358131 74.510 102 25 1 76 177 1 101 2.54e-47 160
Msa1245290 MtrunA17_Chr8g0357921 71.154 104 22 1 388 491 42 137 4.56e-47 160
Msa1245290 MtrunA17_Chr8g0357971 65.138 109 29 3 2 102 1 108 7.74e-37 131
Msa1245290 MtrunA17_Chr8g0358161 59.504 121 9 3 388 507 257 338 6.32e-32 125
Msa1245290 MtrunA17_Chr8g0358161 88.525 61 7 0 343 403 4 64 2.94e-28 115
Msa1245290 MtrunA17_Chr8g0357661 49.524 105 45 1 388 492 74 170 8.22e-27 106
Msa1245290 MtrunA17_Chr4g0048721 30.502 259 151 9 6 245 6 254 9.98e-23 101
Msa1245290 MtrunA17_Chr8g0361141 28.923 325 178 13 11 295 8 319 1.88e-21 98.2
Msa1245290 MtrunA17_Chr3g0081001 43.396 106 59 1 394 499 553 657 6.78e-21 96.3
Msa1245290 MtrunA17_Chr2g0280681 31.707 205 108 6 74 262 78 266 1.86e-19 92.0
Msa1245290 MtrunA17_Chr2g0280681 35.537 121 72 2 386 505 707 822 2.26e-18 88.6
Msa1245290 MtrunA17_Chr3g0081011 42.453 106 60 1 394 499 549 653 2.59e-19 91.3
Msa1245290 MtrunA17_Chr4g0048761 29.630 216 128 6 11 212 27 232 3.47e-19 90.9
Msa1245290 MtrunA17_Chr8g0357941 74.074 54 12 1 450 503 1 52 4.29e-19 80.9
Msa1245290 MtrunA17_Chr4g0048651 36.774 155 85 5 64 212 90 237 5.55e-19 89.7
Msa1245290 MtrunA17_Chr8g0361441 32.955 264 143 12 2 248 5 251 7.51e-19 90.1
Msa1245290 MtrunA17_Chr8g0361441 41.935 93 52 2 400 492 721 811 1.05e-14 77.0
Msa1245290 MtrunA17_Chr8g0361301 30.796 289 164 9 2 280 1 263 8.23e-19 90.1
Msa1245290 MtrunA17_Chr8g0357831 58.904 73 22 1 388 460 403 467 1.57e-18 88.6
Msa1245290 MtrunA17_Chr8g0357831 45.545 101 49 2 309 403 110 210 1.09e-14 76.6
Msa1245290 MtrunA17_Chr4g0048741 29.091 220 124 7 11 212 27 232 1.99e-18 89.0
Msa1245290 MtrunA17_Chr4g0048741 35.714 112 61 3 390 499 745 847 3.81e-11 65.9
Msa1245290 MtrunA17_Chr8g0361261 30.104 289 166 9 2 280 32 294 2.08e-18 89.0
Msa1245290 MtrunA17_Chr4g0048641 30.769 195 119 6 64 250 92 278 2.71e-18 88.6
Msa1245290 MtrunA17_Chr4g0048641 33.929 112 63 3 390 499 671 773 2.23e-11 66.6
Msa1245290 MtrunA17_Chr4g0042351 32.468 231 130 9 32 250 31 247 3.82e-18 87.8
Msa1245290 MtrunA17_Chr4g0042351 41.975 81 47 0 400 480 668 748 1.36e-15 79.7
Msa1245290 MtrunA17_Chr2g0323301 28.800 250 162 8 11 248 8 253 4.08e-18 87.8
Msa1245290 MtrunA17_Chr3g0082941 43.678 87 49 0 392 478 380 466 9.95e-18 85.9
Msa1245290 MtrunA17_Chr8g0361251 31.746 315 193 10 3 302 1 308 1.82e-17 85.9
Msa1245290 MtrunA17_Chr8g0361251 37.008 127 67 3 373 492 692 812 2.47e-12 69.7
Msa1245290 MtrunA17_Chr3g0078531 43.333 90 50 1 397 486 739 827 3.69e-17 84.7
Msa1245290 MtrunA17_Chr4g0042391 31.878 229 134 9 32 250 31 247 5.82e-17 84.3
Msa1245290 MtrunA17_Chr4g0042391 39.024 82 50 0 400 481 668 749 1.08e-13 73.9
Msa1245290 MtrunA17_Chr4g0042401 29.167 264 147 10 11 249 3 251 1.47e-16 82.8
Msa1245290 MtrunA17_Chr4g0042401 39.744 78 47 0 395 472 713 790 2.73e-11 66.2
Msa1245290 MtrunA17_Chr3g0081071 35.115 131 83 1 373 501 115 245 1.48e-16 79.3
Msa1245290 MtrunA17_Chr4g0023071 28.906 256 162 9 8 248 3 253 1.51e-16 82.8
Msa1245290 MtrunA17_Chr4g0048691 27.917 240 144 8 25 245 40 269 1.57e-16 82.4
Msa1245290 MtrunA17_Chr4g0048631 30.798 263 157 10 22 264 17 274 1.61e-16 82.8
Msa1245290 MtrunA17_Chr4g0048631 40.000 100 52 1 390 489 745 836 4.55e-16 81.6
Msa1245290 MtrunA17_Chr4g0042441 31.154 260 146 11 11 248 3 251 1.68e-16 82.8
Msa1245290 MtrunA17_Chr4g0042441 38.235 102 62 1 400 500 715 816 5.88e-14 74.7
Msa1245290 MtrunA17_Chr3g0078541 38.235 102 57 2 400 501 745 840 2.32e-16 82.4
Msa1245290 MtrunA17_Chr3g0078541 35.570 149 79 5 74 205 86 234 5.07e-12 68.6
Msa1245290 MtrunA17_Chr5g0422921 28.571 238 156 5 28 253 15 250 2.48e-16 82.4
Msa1245290 MtrunA17_Chr4g0048801 39.216 102 59 2 404 505 737 835 3.25e-16 82.0
Msa1245290 MtrunA17_Chr4g0048801 32.051 234 138 10 34 252 29 256 2.18e-13 72.8
Msa1245290 MtrunA17_Chr8g0361151 27.437 277 162 9 7 256 3 267 3.43e-16 80.9
Msa1245290 MtrunA17_Chr8g0354391 39.796 98 58 1 404 501 153 249 4.11e-16 78.2
Msa1245290 MtrunA17_Chr4g0048791 35.000 180 96 6 27 192 38 210 4.90e-16 81.3
Msa1245290 MtrunA17_Chr4g0048791 34.545 110 63 2 390 499 745 845 5.59e-12 68.6
Msa1245290 MtrunA17_Chr8g0361311 38.286 175 88 6 28 189 20 187 5.07e-16 80.5
Msa1245290 MtrunA17_Chr5g0428101 37.069 116 70 2 373 486 687 801 5.41e-16 81.3
Msa1245290 MtrunA17_Chr5g0428101 26.623 308 187 11 28 308 25 320 1.65e-15 79.7
Msa1245290 MtrunA17_Chr4g0042361 35.878 131 81 2 373 501 725 854 5.43e-16 81.3
Msa1245290 MtrunA17_Chr4g0042361 28.216 241 143 10 31 250 58 289 5.36e-11 65.5
Msa1245290 MtrunA17_Chr4g0042421 30.453 243 145 11 25 250 17 252 5.51e-16 80.9
Msa1245290 MtrunA17_Chr8g0354281 46.575 73 39 0 404 476 554 626 7.50e-16 80.5
Msa1245290 MtrunA17_Chr3g0078521 42.529 87 49 1 400 486 734 819 7.94e-16 80.9
Msa1245290 MtrunA17_Chr3g0078521 34.899 149 80 5 74 205 75 223 4.23e-11 65.9
Msa1245290 MtrunA17_Chr4g0042341 38.679 106 62 2 373 476 709 813 1.26e-15 80.1
Msa1245290 MtrunA17_Chr4g0042341 28.571 245 141 11 31 250 23 258 5.01e-12 68.6
Msa1245290 MtrunA17_Chr1g0206351 43.421 76 43 0 400 475 568 643 1.91e-15 79.3
Msa1245290 MtrunA17_Chr4g0048781 32.824 131 83 3 373 499 174 303 2.28e-15 77.0
Msa1245290 MtrunA17_Chr1g0206361 38.679 106 61 3 403 507 561 663 2.32e-15 79.0
Msa1245290 MtrunA17_Chr3g0081101 34.848 132 82 3 373 501 24 154 2.80e-15 73.6
Msa1245290 MtrunA17_Chr8g0354331 34.375 96 63 0 404 499 319 414 3.05e-15 77.8
Msa1245290 MtrunA17_Chr2g0280701 31.884 207 122 8 23 212 8 212 3.30e-15 78.6
Msa1245290 MtrunA17_Chr2g0280701 35.593 118 63 3 388 505 711 815 5.59e-15 78.2
Msa1245290 MtrunA17_Chr4g0042381 31.522 184 109 6 74 250 74 247 4.74e-15 78.2
Msa1245290 MtrunA17_Chr4g0042381 41.558 77 45 0 400 476 668 744 5.49e-14 74.7
Msa1245290 MtrunA17_Chr2g0280841 27.751 209 142 6 30 234 35 238 5.14e-15 77.4
Msa1245290 MtrunA17_Chr8g0360201 30.968 155 99 4 110 261 7 156 6.86e-15 77.8
Msa1245290 MtrunA17_Chr8g0354351 40.206 97 58 0 404 500 552 648 6.87e-15 77.4
Msa1245290 MtrunA17_Chr8g0361431 28.099 242 152 7 18 250 28 256 7.58e-15 77.4
Msa1245290 MtrunA17_Chr8g0361431 36.986 73 45 1 400 472 699 770 7.01e-11 65.1
Msa1245290 MtrunA17_Chr3g0081031 37.288 118 68 3 373 485 538 654 9.31e-15 77.0
Msa1245290 MtrunA17_Chr8g0354431 37.755 98 61 0 403 500 560 657 1.09e-14 77.0
Msa1245290 MtrunA17_Chr3g0093161 36.735 98 61 1 403 500 715 811 1.09e-14 77.0
Msa1245290 MtrunA17_Chr3g0093161 26.837 313 195 11 11 303 8 306 1.33e-11 67.4
Msa1245290 MtrunA17_Chr2g0280711 39.000 100 60 1 403 501 748 847 1.27e-14 77.0
Msa1245290 MtrunA17_Chr2g0280711 28.505 214 139 9 63 264 63 274 4.06e-12 68.9
Msa1245290 MtrunA17_Chr8g0354421 37.755 98 61 0 403 500 581 678 1.30e-14 76.6
Msa1245290 MtrunA17_Chr8g0354291 42.667 75 43 0 402 476 2 76 1.46e-14 69.7
Msa1245290 MtrunA17_Chr6g0453561 35.354 99 63 1 403 501 85 182 1.53e-14 72.0
Msa1245290 MtrunA17_Chr2g0280761 32.593 135 78 3 373 500 17 145 2.01e-14 70.9
Msa1245290 MtrunA17_Chr8g0340061 30.693 202 128 6 18 212 16 212 2.03e-14 75.5
Msa1245290 MtrunA17_Chr8g0354441 43.373 83 47 0 404 486 569 651 2.08e-14 75.9
Msa1245290 MtrunA17_Chr8g0347571 34.579 107 65 1 393 499 778 879 3.37e-14 75.5
Msa1245290 MtrunA17_Chr5g0428111 41.463 82 47 1 400 481 718 798 5.63e-14 74.7
Msa1245290 MtrunA17_Chr5g0428111 27.386 241 146 9 28 250 26 255 5.68e-13 71.6
Msa1245290 MtrunA17_Chr5g0394011 48.611 72 35 1 403 472 569 640 5.71e-14 74.7
Msa1245290 MtrunA17_Chr1g0206331 35.227 88 57 0 403 490 553 640 5.84e-14 74.7
Msa1245290 MtrunA17_Chr7g0236571 33.000 100 67 0 403 502 553 652 6.34e-14 74.3
Msa1245290 MtrunA17_Chr3g0078551 34.653 101 65 1 400 500 739 838 8.60e-14 74.3
Msa1245290 MtrunA17_Chr3g0078551 33.505 194 101 9 74 248 77 261 2.13e-13 73.2
Msa1245290 MtrunA17_Chr7g0236201 35.354 99 63 1 403 501 687 784 8.83e-14 74.3
Msa1245290 MtrunA17_Chr7g0236201 25.896 251 174 5 3 246 1 246 1.97e-12 69.7
Msa1245290 MtrunA17_Chr8g0340081 28.767 219 144 6 1 212 1 214 9.71e-14 73.9
Msa1245290 MtrunA17_Chr8g0361341 40.777 103 52 2 390 492 51 144 1.25e-13 68.6
Msa1245290 MtrunA17_Chr8g0340071 29.808 208 132 7 13 212 11 212 1.81e-13 73.2
Msa1245290 MtrunA17_Chr4g0023111 38.372 86 53 0 403 488 932 1017 1.93e-13 73.2
Msa1245290 MtrunA17_Chr7g0236691 34.000 100 66 0 403 502 718 817 2.14e-13 72.8
Msa1245290 MtrunA17_Chr7g0236691 32.692 156 94 5 72 223 73 221 5.18e-12 68.6
Msa1245290 MtrunA17_Chr4g0055011 35.354 99 62 1 403 501 289 385 2.24e-13 72.0
Msa1245290 MtrunA17_Chr2g0280691 35.417 96 54 1 390 485 738 825 2.42e-13 72.8
Msa1245290 MtrunA17_Chr2g0280691 32.000 175 104 5 31 193 25 196 3.90e-12 68.9
Msa1245290 MtrunA17_Chr2g0318811 26.596 282 185 7 22 287 13 288 2.72e-13 72.8
Msa1245290 MtrunA17_Chr2g0318811 31.206 141 77 5 373 505 686 814 3.94e-11 65.9
Msa1245290 MtrunA17_Chr2g0280791 25.329 304 208 10 13 302 12 310 2.93e-13 72.4
Msa1245290 MtrunA17_Chr2g0280791 34.021 97 63 1 404 500 739 834 8.81e-12 67.8
Msa1245290 MtrunA17_Chr1g0206321 38.824 85 52 0 394 478 41 125 3.31e-13 67.4
Msa1245290 MtrunA17_Chr7g0236231 34.746 118 66 4 386 501 724 832 3.31e-13 72.4
Msa1245290 MtrunA17_Chr1g0205771 44.444 72 40 0 403 474 561 632 3.33e-13 72.0
Msa1245290 MtrunA17_Chr7g0236641 35.354 99 62 1 403 501 743 839 3.63e-13 72.4
Msa1245290 MtrunA17_Chr7g0236641 31.469 143 88 4 74 212 75 211 1.12e-11 67.4
Msa1245290 MtrunA17_Chr2g0299041 36.538 104 57 3 397 499 325 420 3.89e-13 71.2
Msa1245290 MtrunA17_Chr4g0048661 40.964 83 40 2 390 472 250 323 5.70e-13 70.5
Msa1245290 MtrunA17_Chr3g0092301 33.333 99 62 2 403 501 148 242 5.99e-13 68.9
Msa1245290 MtrunA17_Chr8g0361281 30.270 185 120 6 72 250 70 251 8.29e-13 71.2
Msa1245290 MtrunA17_Chr8g0361281 36.697 109 59 4 397 504 725 824 1.94e-12 70.1
Msa1245290 MtrunA17_Chr4g0042431 34.653 101 66 0 400 500 46 146 1.25e-12 65.5
Msa1245290 MtrunA17_Chr7g0236161 25.896 251 174 5 3 246 1 246 1.70e-12 70.1
Msa1245290 MtrunA17_Chr7g0236161 34.483 87 57 0 403 489 668 754 3.83e-12 68.9
Msa1245290 MtrunA17_Chr7g0236651 27.200 250 162 8 28 264 21 263 1.77e-12 70.1
Msa1245290 MtrunA17_Chr7g0236651 35.366 82 53 0 403 484 703 784 1.54e-11 67.0
Msa1245290 MtrunA17_Chr7g0236121 25.896 251 174 5 3 246 1 246 2.05e-12 69.7
Msa1245290 MtrunA17_Chr7g0236121 34.483 87 57 0 403 489 721 807 4.00e-12 68.9
Msa1245290 MtrunA17_Chr1g0206551 33.858 127 70 7 373 494 221 338 2.11e-12 68.6
Msa1245290 MtrunA17_Chr5g0426941 42.466 73 39 3 403 474 558 628 2.36e-12 69.3
Msa1245290 MtrunA17_Chr1g0154371 46.575 73 36 3 403 474 574 644 2.43e-12 69.3
Msa1245290 MtrunA17_Chr4g0048731 39.286 84 42 2 390 473 259 333 2.69e-12 68.2
Msa1245290 MtrunA17_Chr7g0236511 27.193 228 142 7 6 223 14 227 2.69e-12 69.3
Msa1245290 MtrunA17_Chr3g0084411 26.800 250 161 8 11 247 9 249 2.74e-12 69.3
Msa1245290 MtrunA17_Chr7g0236531 33.333 117 70 2 386 499 244 355 2.88e-12 68.2
Msa1245290 MtrunA17_Chr6g0453581 30.857 175 92 6 14 167 3 169 2.99e-12 65.1
Msa1245290 MtrunA17_Chr8g0340111 28.718 195 126 6 27 212 25 215 3.36e-12 69.3
Msa1245290 MtrunA17_Chr5g0394021 46.667 75 36 2 403 476 539 610 3.55e-12 68.9
Msa1245290 MtrunA17_Chr4g0048681 34.314 102 64 2 373 472 466 566 3.72e-12 68.9
Msa1245290 MtrunA17_Chr3g0084621 30.435 184 114 7 72 248 77 253 4.19e-12 68.6
Msa1245290 MtrunA17_Chr2g0280831 34.021 97 63 1 404 500 313 408 6.48e-12 67.4
Msa1245290 MtrunA17_Chr3g0098791 38.017 121 69 3 72 189 79 196 6.70e-12 67.8
Msa1245290 MtrunA17_Chr8g0354271 39.535 86 51 1 392 476 542 627 6.95e-12 68.2
Msa1245290 MtrunA17_Chr4g0055021 33.562 146 86 4 72 212 73 212 8.50e-12 67.0
Msa1245290 MtrunA17_Chr8g0340091 28.155 206 136 6 13 211 64 264 8.88e-12 67.8
Msa1245290 MtrunA17_Chr1g0206561 38.889 72 41 3 403 473 548 617 9.69e-12 67.4
Msa1245290 MtrunA17_Chr4g0071371 34.615 104 66 2 397 499 347 449 9.93e-12 67.0
Msa1245290 MtrunA17_Chr2g0280801 34.021 97 63 1 404 500 745 840 1.02e-11 67.8
Msa1245290 MtrunA17_Chr2g0323231 37.333 75 47 0 403 477 396 470 1.33e-11 66.6
Msa1245290 MtrunA17_Chr8g0357871 45.455 66 25 1 385 450 39 93 1.46e-11 61.6
Msa1245290 MtrunA17_Chr7g0236561 29.944 177 111 5 72 243 53 221 1.81e-11 67.0
Msa1245290 MtrunA17_Chr1g0154351 34.091 88 57 1 403 490 576 662 2.38e-11 66.2
Msa1245290 MtrunA17_Chr7g0236341 33.000 100 63 1 403 502 735 830 2.60e-11 66.2
Msa1245290 MtrunA17_Chr1g0206461 34.000 100 56 2 403 493 551 649 2.77e-11 66.2
Msa1245290 MtrunA17_Chr5g0428511 36.364 77 47 2 403 478 2 77 3.43e-11 60.5
Msa1245290 MtrunA17_Chr1g0206231 36.364 99 63 0 403 501 564 662 4.46e-11 65.5
Msa1245290 MtrunA17_Chr6g0474961 32.530 83 56 0 397 479 128 210 5.19e-11 63.2
Msa1245290 MtrunA17_Chr3g0119041 37.931 87 53 1 400 486 555 640 5.68e-11 65.1
Msa1245290 MtrunA17_Chr2g0280781 34.375 96 59 1 403 498 728 819 5.75e-11 65.1
Msa1245290 MtrunA17_Chr4g0023221 31.667 120 73 3 386 505 936 1046 6.23e-11 65.1
Msa1245290 MtrunA17_Chr4g0048581 36.000 75 48 0 403 477 748 822 6.29e-11 65.1
Msa1245290 MtrunA17_Chr6g0475091 34.444 90 55 1 386 475 787 872 7.97e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245290 AT1G67520.4 32.000 400 194 17 74 403 79 470 1.43e-35 141
Msa1245290 AT1G67520.1 30.928 388 182 14 74 403 79 438 1.34e-33 134
Msa1245290 AT5G18470.1 33.579 271 153 9 32 276 30 299 5.68e-33 130
Msa1245290 AT3G16030.3 41.379 174 87 5 73 233 84 255 3.49e-26 112
Msa1245290 AT3G16030.8 41.379 174 87 5 73 233 84 255 3.49e-26 112
Msa1245290 AT3G16030.5 41.379 174 87 5 73 233 84 255 3.49e-26 112
Msa1245290 AT3G16030.4 41.379 174 87 5 73 233 84 255 3.60e-26 113
Msa1245290 AT3G16030.1 41.379 174 87 5 73 233 73 244 4.07e-26 113
Msa1245290 AT3G16030.1 27.660 141 97 3 338 473 677 817 7.52e-12 68.6
Msa1245290 AT3G16030.7 41.379 174 87 5 73 233 84 255 4.13e-26 112
Msa1245290 AT3G16030.6 41.379 174 87 5 73 233 84 255 5.02e-26 112
Msa1245290 AT3G16030.6 27.660 141 97 3 338 473 698 838 9.05e-12 68.2
Msa1245290 AT1G67520.2 40.571 175 98 5 74 246 79 249 9.29e-26 111
Msa1245290 AT1G67520.3 40.571 175 98 5 74 246 79 249 1.61e-25 111
Msa1245290 AT1G67520.6 44.681 141 74 3 74 212 86 224 1.88e-25 111
Msa1245290 AT4G11460.1 36.111 108 68 1 400 507 564 670 6.03e-18 87.8
Msa1245290 AT4G11460.3 36.111 108 68 1 400 507 561 667 6.22e-18 87.4
Msa1245290 AT4G11460.2 36.111 108 68 1 400 507 486 592 6.84e-18 87.4
Msa1245290 AT1G11330.1 41.748 103 58 1 403 505 739 839 9.30e-18 87.0
Msa1245290 AT1G11330.1 33.113 151 93 4 64 212 78 222 1.29e-13 73.9
Msa1245290 AT1G11330.2 41.748 103 58 1 403 505 741 841 9.39e-18 87.0
Msa1245290 AT1G11330.2 33.113 151 93 4 64 212 78 222 1.34e-13 73.9
Msa1245290 AT1G65790.3 30.964 197 126 6 72 264 77 267 1.16e-17 86.7
Msa1245290 AT1G65790.2 30.964 197 126 6 72 264 77 267 1.16e-17 86.7
Msa1245290 AT1G65790.1 30.964 197 126 6 72 264 77 267 1.57e-17 86.7
Msa1245290 AT1G65790.1 35.922 103 62 1 403 501 736 838 2.84e-14 76.3
Msa1245290 AT3G12000.1 31.551 187 114 6 72 250 86 266 2.50e-17 84.7
Msa1245290 AT4G23240.2 37.864 103 61 1 400 502 243 342 5.94e-17 82.8
Msa1245290 AT1G11350.1 42.424 99 55 1 403 501 729 825 1.40e-16 83.6
Msa1245290 AT4G21380.2 28.287 251 162 8 28 264 27 273 1.56e-16 83.2
Msa1245290 AT4G23240.1 37.864 103 61 1 400 502 550 649 1.77e-16 82.8
Msa1245290 AT4G21380.1 28.287 251 162 8 28 264 27 273 2.06e-16 83.2
Msa1245290 AT4G11470.2 42.353 85 49 0 391 475 550 634 3.68e-16 82.0
Msa1245290 AT4G11470.1 42.353 85 49 0 391 475 545 629 3.76e-16 82.0
Msa1245290 AT3G45860.1 44.444 72 40 0 404 475 571 642 5.32e-16 81.6
Msa1245290 AT4G11480.3 42.353 85 49 0 391 475 530 614 1.08e-15 80.5
Msa1245290 AT4G11480.4 42.353 85 49 0 391 475 527 611 1.12e-15 80.5
Msa1245290 AT4G11480.1 42.353 85 49 0 391 475 535 619 1.17e-15 80.5
Msa1245290 AT3G16030.2 45.192 104 45 3 142 233 8 111 1.35e-15 80.1
Msa1245290 AT3G16030.2 27.660 141 97 3 338 473 554 694 1.11e-11 67.8
Msa1245290 AT4G23280.3 35.922 103 65 1 400 501 509 611 2.46e-15 79.3
Msa1245290 AT4G23280.2 36.364 99 62 1 404 501 561 659 2.99e-15 79.0
Msa1245290 AT4G23280.1 36.364 99 62 1 404 501 563 661 3.13e-15 79.0
Msa1245290 AT1G11300.1 35.052 97 63 0 403 499 719 815 6.21e-15 78.2
Msa1245290 AT1G11300.1 27.570 214 137 8 64 268 71 275 1.06e-14 77.4
Msa1245290 AT1G11300.2 35.052 97 63 0 403 499 704 800 6.42e-15 78.2
Msa1245290 AT1G11300.2 27.570 214 137 8 64 268 71 275 1.13e-14 77.4
Msa1245290 AT4G23290.1 36.893 103 62 1 400 502 535 634 8.56e-15 77.8
Msa1245290 AT4G23290.2 36.893 103 62 1 400 502 578 677 1.07e-14 77.4
Msa1245290 AT4G21390.1 32.544 169 97 7 74 234 79 238 1.13e-14 77.4
Msa1245290 AT4G21390.2 32.544 169 97 7 74 234 79 238 1.31e-14 77.0
Msa1245290 AT4G23180.1 37.500 96 56 1 395 486 557 652 1.70e-14 76.6
Msa1245290 AT4G23320.2 35.849 106 65 1 400 502 398 503 2.34e-14 75.9
Msa1245290 AT4G23320.1 35.849 106 65 1 400 502 398 503 2.34e-14 75.9
Msa1245290 AT4G23320.3 35.849 106 65 1 400 502 419 524 2.40e-14 75.9
Msa1245290 AT2G19130.1 25.287 261 170 9 2 248 1 250 3.72e-14 75.9
Msa1245290 AT4G11530.1 41.558 77 45 0 396 472 563 639 4.94e-14 75.1
Msa1245290 AT1G11303.1 26.991 226 147 7 64 280 71 287 6.70e-14 75.1
Msa1245290 AT1G11303.1 35.000 80 52 0 403 482 719 798 1.36e-11 67.8
Msa1245290 AT4G00970.1 42.697 89 44 4 403 489 563 646 8.63e-14 74.3
Msa1245290 AT4G23270.3 40.789 76 45 0 400 475 541 616 8.76e-14 74.3
Msa1245290 AT4G23270.2 40.789 76 45 0 400 475 541 616 9.46e-14 74.3
Msa1245290 AT4G23270.1 40.789 76 45 0 400 475 541 616 9.46e-14 74.3
Msa1245290 AT1G11330.3 33.113 151 93 4 64 212 78 222 1.41e-13 73.9
Msa1245290 AT1G61610.1 28.322 286 165 15 2 262 1 271 2.02e-13 73.6
Msa1245290 AT1G61610.1 39.437 71 43 0 403 473 741 811 2.44e-11 67.0
Msa1245290 AT1G61610.2 28.322 286 165 15 2 262 1 271 2.54e-13 73.2
Msa1245290 AT4G23310.2 36.842 76 48 0 400 475 683 758 4.03e-13 72.4
Msa1245290 AT4G23310.1 36.842 76 48 0 400 475 723 798 4.17e-13 72.4
Msa1245290 AT4G23130.2 38.889 72 44 0 404 475 563 634 4.67e-13 72.0
Msa1245290 AT4G23130.1 38.889 72 44 0 404 475 559 630 4.90e-13 72.0
Msa1245290 AT4G23150.1 40.789 76 45 0 400 475 550 625 4.90e-13 72.0
Msa1245290 AT4G23200.1 32.039 103 60 1 400 502 551 643 6.54e-13 71.6
Msa1245290 AT4G00960.2 43.836 73 38 3 403 473 181 252 6.66e-13 69.7
Msa1245290 AT4G23220.1 41.892 74 43 0 400 473 551 624 6.94e-13 71.6
Msa1245290 AT4G00960.3 43.836 73 38 3 403 473 188 259 7.54e-13 69.7
Msa1245290 AT4G23190.3 36.842 95 58 1 400 494 489 581 7.73e-13 71.2
Msa1245290 AT4G23190.4 36.842 95 58 1 400 494 489 581 7.73e-13 71.2
Msa1245290 AT4G23300.1 40.741 81 46 1 400 478 570 650 7.79e-13 71.6
Msa1245290 AT4G23190.1 36.842 95 58 1 400 494 567 659 7.99e-13 71.2
Msa1245290 AT4G27300.1 29.146 199 129 6 74 264 76 270 1.01e-12 71.2
Msa1245290 AT4G00960.1 43.836 73 38 3 403 473 275 346 1.20e-12 70.1
Msa1245290 AT4G23140.1 41.096 73 43 0 403 475 568 640 1.55e-12 70.5
Msa1245290 AT4G23140.2 41.096 73 43 0 403 475 574 646 1.57e-12 70.5
Msa1245290 AT4G23160.1 39.362 94 56 1 404 497 577 669 1.80e-12 70.5
Msa1245290 AT1G11340.2 27.511 229 147 8 34 251 95 315 1.90e-12 70.5
Msa1245290 AT1G11340.1 27.511 229 147 8 34 251 27 247 2.17e-12 70.1
Msa1245290 AT1G11340.3 27.511 229 147 8 34 251 95 315 2.36e-12 70.1
Msa1245290 AT4G23260.1 40.789 76 45 0 400 475 554 629 3.96e-12 69.3
Msa1245290 AT4G23260.2 40.789 76 45 0 400 475 543 618 4.23e-12 68.9
Msa1245290 AT1G11280.4 29.730 222 140 8 11 224 20 233 4.70e-12 69.3
Msa1245290 AT1G11280.1 29.730 222 140 8 11 224 20 233 4.74e-12 69.3
Msa1245290 AT1G11280.3 29.730 222 140 8 11 224 10 223 5.24e-12 68.9
Msa1245290 AT1G11280.2 29.730 222 140 8 11 224 10 223 5.32e-12 68.9
Msa1245290 AT1G65800.1 35.922 103 62 1 403 501 740 842 5.94e-12 68.9
Msa1245290 AT1G65800.1 30.128 156 106 3 72 225 77 231 1.31e-11 67.8
Msa1245290 AT1G11280.5 29.730 222 140 8 11 224 10 223 6.14e-12 68.6
Msa1245290 AT4G23250.1 42.105 76 44 0 400 475 574 649 6.56e-12 68.6
Msa1245290 AT4G23250.3 42.105 76 44 0 400 475 569 644 7.24e-12 68.6
Msa1245290 AT1G61480.1 30.769 130 85 3 373 500 681 807 7.82e-12 68.6
Msa1245290 AT1G61480.1 26.592 267 178 11 8 264 3 261 9.22e-11 65.1
Msa1245290 AT4G23250.2 42.105 76 44 0 400 475 569 644 8.60e-12 68.6
Msa1245290 AT1G65800.2 30.128 156 106 3 72 225 77 231 9.80e-12 67.8
Msa1245290 AT4G27290.2 26.562 256 143 11 21 247 13 252 1.90e-11 67.4
Msa1245290 AT1G61360.1 30.622 209 130 7 12 212 3 204 2.10e-11 67.0
Msa1245290 AT1G61430.11 37.349 83 51 1 393 475 673 754 2.24e-11 67.0
Msa1245290 AT1G61430.12 37.349 83 51 1 393 475 673 754 2.24e-11 67.0
Msa1245290 AT1G61430.13 37.349 83 51 1 393 475 673 754 2.24e-11 67.0
Msa1245290 AT4G27290.1 26.562 256 143 11 21 247 13 252 2.26e-11 67.0
Msa1245290 AT1G61430.1 37.349 83 51 1 393 475 699 780 2.35e-11 67.0
Msa1245290 AT1G61430.9 37.349 83 51 1 393 475 696 777 2.52e-11 66.6
Msa1245290 AT1G61380.1 32.895 152 90 6 74 219 70 215 2.57e-11 66.6
Msa1245290 AT4G23210.3 38.667 75 46 0 400 474 570 644 2.71e-11 66.6
Msa1245290 AT4G23230.1 37.037 81 51 0 395 475 546 626 4.45e-11 65.9
Msa1245290 AT1G61440.1 32.381 105 68 2 373 475 663 766 5.38e-11 65.9
Msa1245290 AT1G61440.3 32.381 105 68 2 373 475 668 771 5.49e-11 65.9
Msa1245290 AT1G61440.2 32.381 105 68 2 373 475 693 796 6.07e-11 65.5
Msa1245290 AT4G03230.2 34.821 112 60 3 373 476 775 881 7.13e-11 65.5
Msa1245290 AT4G03230.6 34.821 112 60 3 373 476 775 881 7.13e-11 65.5
Msa1245290 AT4G03230.5 34.821 112 60 3 373 476 803 909 7.28e-11 65.5
Msa1245290 AT4G11900.1 29.954 217 115 11 118 315 152 350 7.44e-11 65.5
Msa1245290 AT4G03230.3 34.821 112 60 3 373 476 710 816 7.56e-11 65.5
Msa1245290 AT4G03230.7 34.821 112 60 3 373 476 718 824 7.65e-11 65.5
Msa1245290 AT1G61390.1 26.768 198 131 8 74 264 91 281 8.26e-11 65.1
Msa1245290 AT1G61420.2 40.000 75 44 1 403 477 713 786 8.67e-11 65.1
Msa1245290 AT1G61420.4 40.000 75 44 1 403 477 713 786 8.67e-11 65.1
Msa1245290 AT1G61420.1 40.000 75 44 1 403 477 711 784 8.81e-11 65.1
Msa1245290 AT1G61420.3 40.000 75 44 1 403 477 561 634 8.88e-11 65.1
Msa1245290 AT4G03230.4 34.821 112 60 3 373 476 875 981 8.95e-11 65.1
Msa1245290 AT4G03230.1 34.821 112 60 3 373 476 875 981 8.95e-11 65.1
Msa1245290 AT4G11900.9 29.954 217 115 11 118 315 83 281 8.99e-11 65.1
Msa1245290 AT1G61420.5 40.000 75 44 1 403 477 563 636 9.21e-11 64.7
Msa1245290 AT4G05200.1 31.818 110 72 3 400 507 561 669 9.67e-11 64.7
Msa1245290 AT4G05200.2 31.818 110 72 3 400 507 579 687 9.99e-11 64.7

Find 98 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACTATACAAACTGTTAA+TGG 0.195633 8_2:+35178205 Msa1245290:CDS
AGACTAAATTCTCCTGAATT+TGG 0.206390 8_2:-35178562 None:intergenic
CATTACCTCGAAGGGGAATT+TGG 0.238083 8_2:+35178786 Msa1245290:CDS
AATAAACTCTTTGTCCCATT+TGG 0.256263 8_2:-35178427 None:intergenic
TAATAAACATCGCTTGTATA+TGG 0.273423 8_2:+35181448 Msa1245290:three_prime_UTR
ACATAAAATGCCGGTCTTCT+TGG 0.282840 8_2:-35181290 None:intergenic
ACATCGCTTGTATATGGTTT+TGG 0.283535 8_2:+35181454 Msa1245290:three_prime_UTR
ATGTTCAATTCACCTTGTTT+TGG 0.302156 8_2:-35178595 None:intergenic
ATGAAAATATACATATTAAA+AGG 0.314951 8_2:-35181528 None:intergenic
TTGGCTAAGCATAAAATGAT+TGG 0.315872 8_2:-35179464 None:intergenic
TCAAAATAGAATCTCAAAAT+AGG 0.317173 8_2:+35178308 Msa1245290:CDS
GCTAGTAGTACGACAAATAT+TGG 0.317215 8_2:+35178829 Msa1245290:CDS
GGTGAAGAATAAATGATAAT+TGG 0.323025 8_2:-35178337 None:intergenic
GCTAATGGATCCAACATTAA+AGG 0.333737 8_2:+35181133 Msa1245290:CDS
TTTAGAACATAGCGAGGAAT+TGG 0.336764 8_2:-35178143 None:intergenic
CAACTTCATTGTTGGGATCA+AGG 0.338727 8_2:-35178479 None:intergenic
CTTTAAAGTTACCTTATAAA+CGG 0.339832 8_2:-35179782 None:intergenic
ATAATTGGTCATTGGGTTCA+TGG 0.343848 8_2:+35178524 Msa1245290:CDS
ATGGGACAAAGAGTTTATTA+TGG 0.344316 8_2:+35178431 Msa1245290:CDS
AACAAGACATAATTGGTCAT+TGG 0.345578 8_2:+35178516 Msa1245290:CDS
GAAAAGTAAAAGAAAGGATT+TGG 0.346661 8_2:+35179615 Msa1245290:CDS
CAGGAGAATTTAGTCTTGAA+TGG 0.355422 8_2:+35178569 Msa1245290:CDS
ATAAACTCTTTGTCCCATTT+GGG 0.372118 8_2:-35178426 None:intergenic
ACTGATAAACTACCAAATTC+AGG 0.379464 8_2:+35178550 Msa1245290:CDS
AGGCTACGGACCCGTTTATA+AGG 0.384757 8_2:+35179771 Msa1245290:CDS
CGTGTCGGTGTCTTGCCCTT+TGG 0.388821 8_2:-35181345 None:intergenic
GGGAGGATAAACCAACTTGC+AGG 0.400993 8_2:+35178902 Msa1245290:CDS
TAATTCCCAACTTCATTGTT+GGG 0.401387 8_2:-35178486 None:intergenic
TTTAAAGTTACCTTATAAAC+GGG 0.403154 8_2:-35179781 None:intergenic
ACAAGACATAATTGGTCATT+GGG 0.414532 8_2:+35178517 Msa1245290:CDS
CATAGTTGCCACAGTGTTGT+TGG 0.420710 8_2:-35178368 None:intergenic
ATGCACCTTTGCACTTCATC+AGG 0.422247 8_2:-35181167 None:intergenic
AACTGTTGAGTTTACGTCTA+CGG 0.423281 8_2:-35178260 None:intergenic
ATTAATAGGCATGGGAGTTA+TGG 0.426301 8_2:+35181090 Msa1245290:intron
TGGCTAAGCATAAAATGATT+GGG 0.428914 8_2:-35179463 None:intergenic
ACAGGAGTGTGGATTTATAA+TGG 0.433495 8_2:+35178229 Msa1245290:CDS
TTAATTCCCAACTTCATTGT+TGG 0.439208 8_2:-35178487 None:intergenic
ACAAATGTTTCCTTTAATGT+TGG 0.448079 8_2:-35181143 None:intergenic
GATATAACATTAGACATTGT+AGG 0.448146 8_2:-35181233 None:intergenic
TTTGCCTTCGAAGTTAAAGA+TGG 0.456294 8_2:+35178745 Msa1245290:CDS
ACTGTTGAGTTTACGTCTAC+GGG 0.458058 8_2:-35178259 None:intergenic
GGGAATTTGGTAGCTGATGA+TGG 0.458369 8_2:+35178799 Msa1245290:CDS
AGATCTTGAAGATGAATTCA+AGG 0.458546 8_2:+35179666 Msa1245290:CDS
TGGTGAGTATCTAAAGCTAA+TGG 0.461240 8_2:+35181118 Msa1245290:CDS
AGCGGAAAACTTAAAAGTAA+TGG 0.463109 8_2:+35178646 Msa1245290:CDS
AGGAGAATTTAGTCTTGAAT+GGG 0.463698 8_2:+35178570 Msa1245290:CDS
GGAAATGCAGATATGTGTTA+TGG 0.470259 8_2:+35178850 Msa1245290:CDS
CTTGATCCCAACAATGAAGT+TGG 0.470355 8_2:+35178480 Msa1245290:CDS
AGAGACGCGGTAAAGTGTAT+TGG 0.471904 8_2:+35178620 Msa1245290:CDS
CTTCCCATCTTTAACTTCGA+AGG 0.478561 8_2:-35178749 None:intergenic
ATTTCTCTGTCATGTGAAGA+AGG 0.484931 8_2:+35181383 Msa1245290:CDS
GTTAGAAGAGAAATCTTTGA+GGG 0.485155 8_2:+35181311 Msa1245290:CDS
GTTGGGATCAAGGTGTCATC+GGG 0.489954 8_2:-35178469 None:intergenic
TGTTGGGATCAAGGTGTCAT+CGG 0.491454 8_2:-35178470 None:intergenic
TACATATGTTGAACATTGGC+TGG 0.498169 8_2:-35178685 None:intergenic
AGCTACCAAATTCCCCTTCG+AGG 0.503037 8_2:-35178791 None:intergenic
CACAAACTTGCCAAGAAGAC+CGG 0.505670 8_2:+35181280 Msa1245290:CDS
AGATAAGAAAAGTAAAAGAA+AGG 0.507057 8_2:+35179609 Msa1245290:intron
AAACCAACTTGCAGGGAACC+TGG 0.512863 8_2:+35178910 Msa1245290:CDS
CAACACTGTGGCAACTATGT+TGG 0.512941 8_2:+35178372 Msa1245290:CDS
TTGATCCCAACAATGAAGTT+GGG 0.513886 8_2:+35178481 Msa1245290:CDS
TGATATGCTTATGGTTGTGG+TGG 0.536037 8_2:+35178053 Msa1245290:CDS
CAATGGTACATTACCTCGAA+GGG 0.543917 8_2:+35178778 Msa1245290:CDS
AAGTAAAAGAAAGGATTTGG+CGG 0.553908 8_2:+35179618 Msa1245290:CDS
CTGTTAATGGCACAGGAGTG+TGG 0.555633 8_2:+35178218 Msa1245290:CDS
AAGTTAGGACATGGAGGCTA+CGG 0.556490 8_2:+35179757 Msa1245290:CDS
TGTTAGAAGAGAAATCTTTG+AGG 0.562670 8_2:+35181310 Msa1245290:CDS
AGTTGCCACAGTGTTGTTGG+AGG 0.564339 8_2:-35178365 None:intergenic
TCTCTTCTAACATAAAATGC+CGG 0.564881 8_2:-35181299 None:intergenic
ATACAAACTGTTAATGGCAC+AGG 0.566102 8_2:+35178211 Msa1245290:CDS
TTGCCTTCGAAGTTAAAGAT+GGG 0.570022 8_2:+35178746 Msa1245290:CDS
ACAAGTGATAGTTTGAAGCC+AGG 0.577293 8_2:+35178106 Msa1245290:CDS
TTGGAATTCAATGTATCACC+TGG 0.582590 8_2:-35178124 None:intergenic
TCACCAGGTTCCCTGCAAGT+TGG 0.583767 8_2:-35178913 None:intergenic
GCATGGGAGTTATGGAATGA+TGG 0.585144 8_2:+35181098 Msa1245290:CDS
TGTTATGGATATAATAGCGA+TGG 0.585283 8_2:+35178865 Msa1245290:CDS
CCTGAAAACAAGTTAGGACA+TGG 0.588994 8_2:+35179748 Msa1245290:CDS
CTTGAATGGGAACCAAAACA+AGG 0.593990 8_2:+35178583 Msa1245290:CDS
TTTCTCTGTCATGTGAAGAA+GGG 0.595447 8_2:+35181384 Msa1245290:CDS
TCCTCGCTATGTTCTAAACA+AGG 0.598548 8_2:+35178148 Msa1245290:CDS
GCCTTGTTTAGAACATAGCG+AGG 0.616371 8_2:-35178149 None:intergenic
CTGATACATATGTTGAACAT+TGG 0.620247 8_2:-35178689 None:intergenic
TAGAAGAGAAATCTTTGAGG+GGG 0.620307 8_2:+35181313 Msa1245290:CDS
ACAGTGTTGTTGGAGGATTG+AGG 0.627608 8_2:-35178358 None:intergenic
AAGATGGGAAGTTTGAACAA+TGG 0.628162 8_2:+35178761 Msa1245290:CDS
TGCTGTAGTCGAATACGTGT+CGG 0.628462 8_2:-35181360 None:intergenic
GGAGGATAAACCAACTTGCA+GGG 0.632461 8_2:+35178903 Msa1245290:CDS
TATGGATATAATAGCGATGG+AGG 0.633822 8_2:+35178868 Msa1245290:CDS
GGTAAAGTGTATTGGAAAAG+CGG 0.638422 8_2:+35178628 Msa1245290:CDS
ACAATGGTACATTACCTCGA+AGG 0.649266 8_2:+35178777 Msa1245290:CDS
TTGTTCCTGATGAAGTGCAA+AGG 0.675769 8_2:+35181162 Msa1245290:CDS
AATGGTACATTACCTCGAAG+GGG 0.675955 8_2:+35178779 Msa1245290:CDS
TTAGAAGAGAAATCTTTGAG+GGG 0.676074 8_2:+35181312 Msa1245290:CDS
GTGGCAACTATGTTGGACAC+AGG 0.681932 8_2:+35178379 Msa1245290:CDS
GTGCAAAGGTGCATTCATGT+TGG 0.682981 8_2:+35181176 Msa1245290:CDS
GAAAACAAGTTAGGACATGG+AGG 0.731862 8_2:+35179751 Msa1245290:CDS
TCAATCCTCCAACAACACTG+TGG 0.736203 8_2:+35178360 Msa1245290:CDS
GAATTGAACATTAAGAGACG+CGG 0.783484 8_2:+35178607 Msa1245290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATGTATATTAATCAA+AGG - chr8_2:35180494-35180513 None:intergenic 10.0%
!! ATTAATAGTTTAATCAAATT+AGG - chr8_2:35181076-35181095 None:intergenic 10.0%
!! AATTTGATTAAACTATTAAT+AGG + chr8_2:35181076-35181095 Msa1245290:intron 10.0%
!! ATGAAAATATACATATTAAA+AGG - chr8_2:35181531-35181550 None:intergenic 10.0%
!! TCAAATTATCATATAATTCT+TGG - chr8_2:35179062-35179081 None:intergenic 15.0%
!!! CATCTAAAACTTTTAATTTT+TGG - chr8_2:35179338-35179357 None:intergenic 15.0%
!!! ATTAATTTGAATTGTGATAT+AGG - chr8_2:35179367-35179386 None:intergenic 15.0%
!!! TTTTAACTTTACATCAATTT+TGG + chr8_2:35179705-35179724 Msa1245290:CDS 15.0%
!!! AAAAAGTGTATTAATTGTTA+AGG + chr8_2:35180073-35180092 Msa1245290:intron 15.0%
!!! TAAGGTATTAAAATTATCTA+TGG + chr8_2:35180091-35180110 Msa1245290:intron 15.0%
!! AAAACAAAAAGACAAAATTT+AGG - chr8_2:35180124-35180143 None:intergenic 15.0%
!!! TACTTGTTTATTTTAAAGTT+AGG - chr8_2:35180408-35180427 None:intergenic 15.0%
!!! ATTTTCCTTCAAAAAAAAAA+CGG - chr8_2:35181429-35181448 None:intergenic 15.0%
!!! AAATTGTTTTGATATGCTTA+TGG + chr8_2:35178044-35178063 Msa1245290:CDS 20.0%
!! TCAAAATAGAATCTCAAAAT+AGG + chr8_2:35178308-35178327 Msa1245290:CDS 20.0%
!!! GTTGTTATATTGTTTTTGTA+TGG - chr8_2:35178964-35178983 None:intergenic 20.0%
!! GAATTATATGATAATTTGAC+TGG + chr8_2:35179063-35179082 Msa1245290:intron 20.0%
!!! TGCATATTTTTGTTTCTTTT+TGG - chr8_2:35179486-35179505 None:intergenic 20.0%
!! AAAAAAAAAAAAAGACAGAC+AGG - chr8_2:35179582-35179601 None:intergenic 20.0%
!! AGATAAGAAAAGTAAAAGAA+AGG + chr8_2:35179609-35179628 Msa1245290:intron 20.0%
!!! TTTAAAGTTACCTTATAAAC+GGG - chr8_2:35179784-35179803 None:intergenic 20.0%
!!! CTTTAAAGTTACCTTATAAA+CGG - chr8_2:35179785-35179804 None:intergenic 20.0%
!! GTAAATTACTATTACAGTTA+TGG + chr8_2:35179850-35179869 Msa1245290:intron 20.0%
!!! AAACTTATATGCATCATTTT+TGG + chr8_2:35179951-35179970 Msa1245290:intron 20.0%
!!! ATGTATTTATCCATTTTGTA+TGG + chr8_2:35179983-35180002 Msa1245290:intron 20.0%
!! ATTAAACTATTAATAGGCAT+GGG + chr8_2:35181082-35181101 Msa1245290:intron 20.0%
!! AAAAAAAAATAATCTCGCAA+TGG + chr8_2:35181504-35181523 Msa1245290:three_prime_UTR 20.0%
!!! AAGTTTTGTCTTTTAATCGA+CGG + chr8_2:35178172-35178191 Msa1245290:CDS 25.0%
! TTGACTATACAAACTGTTAA+TGG + chr8_2:35178205-35178224 Msa1245290:CDS 25.0%
! GGTGAAGAATAAATGATAAT+TGG - chr8_2:35178340-35178359 None:intergenic 25.0%
! ATCCAAAAACAAGACATAAT+TGG + chr8_2:35178509-35178528 Msa1245290:CDS 25.0%
! TATTATAACTTACGTACCAT+GGG - chr8_2:35179187-35179206 None:intergenic 25.0%
! ATATTATAACTTACGTACCA+TGG - chr8_2:35179188-35179207 None:intergenic 25.0%
! TATAAATACGACTTTGTTAC+AGG - chr8_2:35179262-35179281 None:intergenic 25.0%
! AAAAAAAAGTGGATATGGAT+AGG + chr8_2:35179407-35179426 Msa1245290:CDS 25.0%
! AAACAAAAATATGCACTTCA+AGG + chr8_2:35179491-35179510 Msa1245290:CDS 25.0%
! GAAAAGTAAAAGAAAGGATT+TGG + chr8_2:35179615-35179634 Msa1245290:CDS 25.0%
!!! TGTGGAAATATTGTTTTTGA+TGG + chr8_2:35179906-35179925 Msa1245290:intron 25.0%
!!! GAAATATTGTTTTTGATGGT+TGG + chr8_2:35179910-35179929 Msa1245290:intron 25.0%
! GAGTTAAAATCCATACAAAA+TGG - chr8_2:35179996-35180015 None:intergenic 25.0%
!!! GATTTTAACTCTAATATCCA+TGG + chr8_2:35180005-35180024 Msa1245290:intron 25.0%
! TTATGAATTTGAAGAAACCA+TGG - chr8_2:35180025-35180044 None:intergenic 25.0%
! AAAAGACTTTCAAAAACATC+CGG + chr8_2:35180187-35180206 Msa1245290:intron 25.0%
! AGAAATCTTGTACAACTATT+TGG + chr8_2:35180265-35180284 Msa1245290:intron 25.0%
! TTGAAGTCTATATTTGTATG+TGG + chr8_2:35180376-35180395 Msa1245290:intron 25.0%
! ATTTACTTATTAGTTAGCCA+TGG + chr8_2:35180441-35180460 Msa1245290:intron 25.0%
!!! TAACGTTATTTAGTTTTCCA+TGG - chr8_2:35180461-35180480 None:intergenic 25.0%
! ATGGAAAACTAAATAACGTT+AGG + chr8_2:35180460-35180479 Msa1245290:intron 25.0%
! TGGAAAACTAAATAACGTTA+GGG + chr8_2:35180461-35180480 Msa1245290:intron 25.0%
!! AACCCAAAAATTTCTGATTT+TGG + chr8_2:35180694-35180713 Msa1245290:intron 25.0%
!! TGCCAAAATCAGAAATTTTT+GGG - chr8_2:35180699-35180718 None:intergenic 25.0%
!! ATGCCAAAATCAGAAATTTT+TGG - chr8_2:35180700-35180719 None:intergenic 25.0%
!!! AAAAATTTCTGATTTTGGCA+TGG + chr8_2:35180699-35180718 Msa1245290:intron 25.0%
! GATTAAACTATTAATAGGCA+TGG + chr8_2:35181081-35181100 Msa1245290:intron 25.0%
! ACAAATGTTTCCTTTAATGT+TGG - chr8_2:35181146-35181165 None:intergenic 25.0%
! GATATAACATTAGACATTGT+AGG - chr8_2:35181236-35181255 None:intergenic 25.0%
!!! AAACACCGTTTTTTTTTTGA+AGG + chr8_2:35181421-35181440 Msa1245290:three_prime_UTR 25.0%
! TAATAAACATCGCTTGTATA+TGG + chr8_2:35181448-35181467 Msa1245290:three_prime_UTR 25.0%
! TTTTGATATGCTTATGGTTG+TGG + chr8_2:35178050-35178069 Msa1245290:CDS 30.0%
TTCAAAAACTTCACCCAAAT+GGG + chr8_2:35178413-35178432 Msa1245290:CDS 30.0%
ATAAACTCTTTGTCCCATTT+GGG - chr8_2:35178429-35178448 None:intergenic 30.0%
AATAAACTCTTTGTCCCATT+TGG - chr8_2:35178430-35178449 None:intergenic 30.0%
ATGGGACAAAGAGTTTATTA+TGG + chr8_2:35178431-35178450 Msa1245290:CDS 30.0%
TAATTCCCAACTTCATTGTT+GGG - chr8_2:35178489-35178508 None:intergenic 30.0%
TTAATTCCCAACTTCATTGT+TGG - chr8_2:35178490-35178509 None:intergenic 30.0%
!!! GACCAATTATGTCTTGTTTT+TGG - chr8_2:35178514-35178533 None:intergenic 30.0%
AACAAGACATAATTGGTCAT+TGG + chr8_2:35178516-35178535 Msa1245290:CDS 30.0%
ACAAGACATAATTGGTCATT+GGG + chr8_2:35178517-35178536 Msa1245290:CDS 30.0%
ACTGATAAACTACCAAATTC+AGG + chr8_2:35178550-35178569 Msa1245290:CDS 30.0%
AGACTAAATTCTCCTGAATT+TGG - chr8_2:35178565-35178584 None:intergenic 30.0%
!! AGGAGAATTTAGTCTTGAAT+GGG + chr8_2:35178570-35178589 Msa1245290:CDS 30.0%
!! ATGTTCAATTCACCTTGTTT+TGG - chr8_2:35178598-35178617 None:intergenic 30.0%
AGCGGAAAACTTAAAAGTAA+TGG + chr8_2:35178646-35178665 Msa1245290:CDS 30.0%
CTGATACATATGTTGAACAT+TGG - chr8_2:35178692-35178711 None:intergenic 30.0%
TGTTATGGATATAATAGCGA+TGG + chr8_2:35178865-35178884 Msa1245290:CDS 30.0%
!! GAATTTTGAGCTGATTTTGT+TGG - chr8_2:35179165-35179184 None:intergenic 30.0%
CAAAGTCGTATTTATATACG+AGG + chr8_2:35179266-35179285 Msa1245290:intron 30.0%
! TACGAGGTTTTTGAATTTGA+AGG + chr8_2:35179282-35179301 Msa1245290:intron 30.0%
! GGTTTTTGAATTTGAAGGAT+AGG + chr8_2:35179287-35179306 Msa1245290:intron 30.0%
TGAATTTGAAGGATAGGATT+AGG + chr8_2:35179293-35179312 Msa1245290:intron 30.0%
GAATTTGAAGGATAGGATTA+GGG + chr8_2:35179294-35179313 Msa1245290:intron 30.0%
TAATTGTGTATAGTCAATGC+AGG + chr8_2:35179383-35179402 Msa1245290:intron 30.0%
TCAATGCAGGTAAAAAAAAG+TGG + chr8_2:35179396-35179415 Msa1245290:intron 30.0%
CAGGTAAAAAAAAGTGGATA+TGG + chr8_2:35179402-35179421 Msa1245290:intron 30.0%
TGGCTAAGCATAAAATGATT+GGG - chr8_2:35179466-35179485 None:intergenic 30.0%
TTGGCTAAGCATAAAATGAT+TGG - chr8_2:35179467-35179486 None:intergenic 30.0%
AAGTAAAAGAAAGGATTTGG+CGG + chr8_2:35179618-35179637 Msa1245290:CDS 30.0%
AGATCTTGAAGATGAATTCA+AGG + chr8_2:35179666-35179685 Msa1245290:CDS 30.0%
!! ATCAATTTTGGAAGCAACTA+TGG + chr8_2:35179717-35179736 Msa1245290:CDS 30.0%
! TTTTCACCTGAAAACAAGTT+AGG + chr8_2:35179742-35179761 Msa1245290:CDS 30.0%
ATTTGTTTGCAACATGAAGA+TGG - chr8_2:35179878-35179897 None:intergenic 30.0%
GCAAACAAATGTTTATCATG+TGG + chr8_2:35179888-35179907 Msa1245290:intron 30.0%
!!! TCTTTTTGTTTTACGACTTC+AGG + chr8_2:35180132-35180151 Msa1245290:intron 30.0%
!!! CTTTTTGTTTTACGACTTCA+GGG + chr8_2:35180133-35180152 Msa1245290:intron 30.0%
CGTGGAATTCAAAAATGAAT+TGG + chr8_2:35180219-35180238 Msa1245290:intron 30.0%
ATATATGCCAAACAAAAGCT+TGG + chr8_2:35180327-35180346 Msa1245290:intron 30.0%
! TAGAAATCCAAGCTTTTGTT+TGG - chr8_2:35180337-35180356 None:intergenic 30.0%
TCAACATATTCTCACCAAAT+AGG - chr8_2:35180360-35180379 None:intergenic 30.0%
AAGCGTTTCAACATAATAGA+AGG + chr8_2:35180574-35180593 Msa1245290:intron 30.0%
ATAATAGAAGGAATTGCTCA+AGG + chr8_2:35180586-35180605 Msa1245290:intron 30.0%
AATCATTCATAGAGACTTGA+AGG + chr8_2:35180642-35180661 Msa1245290:intron 30.0%
AATCCTGTTGGTATTTACTA+CGG - chr8_2:35180749-35180768 None:intergenic 30.0%
TAAATACCAACAGGATTGTT+GGG + chr8_2:35180752-35180771 Msa1245290:intron 30.0%
! GTTATGAATTTTGTGTGTAG+TGG + chr8_2:35180852-35180871 Msa1245290:intron 30.0%
CTTGTCCTATTAGATTTAGT+GGG - chr8_2:35181004-35181023 None:intergenic 30.0%
ACTTGTCCTATTAGATTTAG+TGG - chr8_2:35181005-35181024 None:intergenic 30.0%
TCTCTTCTAACATAAAATGC+CGG - chr8_2:35181302-35181321 None:intergenic 30.0%
TGTTAGAAGAGAAATCTTTG+AGG + chr8_2:35181310-35181329 Msa1245290:CDS 30.0%
GTTAGAAGAGAAATCTTTGA+GGG + chr8_2:35181311-35181330 Msa1245290:CDS 30.0%
TTAGAAGAGAAATCTTTGAG+GGG + chr8_2:35181312-35181331 Msa1245290:CDS 30.0%
TTGGAATTCAATGTATCACC+TGG - chr8_2:35178127-35178146 None:intergenic 35.0%
! TTTAGAACATAGCGAGGAAT+TGG - chr8_2:35178146-35178165 None:intergenic 35.0%
ATACAAACTGTTAATGGCAC+AGG + chr8_2:35178211-35178230 Msa1245290:CDS 35.0%
! ACAGGAGTGTGGATTTATAA+TGG + chr8_2:35178229-35178248 Msa1245290:CDS 35.0%
AACTGTTGAGTTTACGTCTA+CGG - chr8_2:35178263-35178282 None:intergenic 35.0%
! GTTTTATCACTAGACTACAC+TGG + chr8_2:35178280-35178299 Msa1245290:CDS 35.0%
CTTCAAAAACTTCACCCAAA+TGG + chr8_2:35178412-35178431 Msa1245290:CDS 35.0%
TTGATCCCAACAATGAAGTT+GGG + chr8_2:35178481-35178500 Msa1245290:CDS 35.0%
ATAATTGGTCATTGGGTTCA+TGG + chr8_2:35178524-35178543 Msa1245290:CDS 35.0%
!! CAGGAGAATTTAGTCTTGAA+TGG + chr8_2:35178569-35178588 Msa1245290:CDS 35.0%
GAATTGAACATTAAGAGACG+CGG + chr8_2:35178607-35178626 Msa1245290:CDS 35.0%
GGTAAAGTGTATTGGAAAAG+CGG + chr8_2:35178628-35178647 Msa1245290:CDS 35.0%
TACATATGTTGAACATTGGC+TGG - chr8_2:35178688-35178707 None:intergenic 35.0%
TTTGCCTTCGAAGTTAAAGA+TGG + chr8_2:35178745-35178764 Msa1245290:CDS 35.0%
TTGCCTTCGAAGTTAAAGAT+GGG + chr8_2:35178746-35178765 Msa1245290:CDS 35.0%
AAGATGGGAAGTTTGAACAA+TGG + chr8_2:35178761-35178780 Msa1245290:CDS 35.0%
GCTAGTAGTACGACAAATAT+TGG + chr8_2:35178829-35178848 Msa1245290:CDS 35.0%
GGAAATGCAGATATGTGTTA+TGG + chr8_2:35178850-35178869 Msa1245290:CDS 35.0%
TATGGATATAATAGCGATGG+AGG + chr8_2:35178868-35178887 Msa1245290:CDS 35.0%
! TTGGTTTATCCTCCCATTTT+TGG - chr8_2:35178897-35178916 None:intergenic 35.0%
TTTATCTGAAAAACCTCACC+AGG - chr8_2:35178931-35178950 None:intergenic 35.0%
!! TGGTGAGGTTTTTCAGATAA+AGG + chr8_2:35178930-35178949 Msa1245290:intron 35.0%
!! TGAGGTTTTTCAGATAAAGG+TGG + chr8_2:35178933-35178952 Msa1245290:intron 35.0%
!! GAGGTTTTTCAGATAAAGGT+GGG + chr8_2:35178934-35178953 Msa1245290:intron 35.0%
ATAAGTCACATCACGTTCAA+TGG - chr8_2:35178986-35179005 None:intergenic 35.0%
ATTGAACGTGATGTGACTTA+TGG + chr8_2:35178985-35179004 Msa1245290:intron 35.0%
CTGGATGTGTATTCTATTCA+TGG + chr8_2:35179082-35179101 Msa1245290:intron 35.0%
!!! TGATTTTGTTGGCTTTACCA+AGG - chr8_2:35179154-35179173 None:intergenic 35.0%
AAATCAGCTCAAAATTCCCA+TGG + chr8_2:35179168-35179187 Msa1245290:intron 35.0%
AAATACGACTTTGTTACAGG+TGG - chr8_2:35179259-35179278 None:intergenic 35.0%
AAGTAAAGCTGTAAAGGGAT+TGG - chr8_2:35179559-35179578 None:intergenic 35.0%
ACAGGAAGTAAAGCTGTAAA+GGG - chr8_2:35179564-35179583 None:intergenic 35.0%
! ATGGTTGGCGATTATTGTTT+TGG + chr8_2:35179925-35179944 Msa1245290:intron 35.0%
GTTGCATTCATGAAGAAGAA+AGG + chr8_2:35180290-35180309 Msa1245290:intron 35.0%
AGCTTGGATTTCTACCTATT+TGG + chr8_2:35180343-35180362 Msa1245290:intron 35.0%
AATCCGTAGTAAATACCAAC+AGG + chr8_2:35180743-35180762 Msa1245290:intron 35.0%
GTAAATACCAACAGGATTGT+TGG + chr8_2:35180751-35180770 Msa1245290:intron 35.0%
! GTGAGTTCTCTAGACTTTTA+TGG + chr8_2:35180780-35180799 Msa1245290:intron 35.0%
TTGCTTCTTGAAATCGTTTG+TGG + chr8_2:35180945-35180964 Msa1245290:intron 35.0%
TGCTTCTTGAAATCGTTTGT+GGG + chr8_2:35180946-35180965 Msa1245290:intron 35.0%
ATTAATAGGCATGGGAGTTA+TGG + chr8_2:35181090-35181109 Msa1245290:intron 35.0%
! TGGTGAGTATCTAAAGCTAA+TGG + chr8_2:35181118-35181137 Msa1245290:CDS 35.0%
! GCTAATGGATCCAACATTAA+AGG + chr8_2:35181133-35181152 Msa1245290:CDS 35.0%
! TAGAAGAGAAATCTTTGAGG+GGG + chr8_2:35181313-35181332 Msa1245290:CDS 35.0%
ATTTCTCTGTCATGTGAAGA+AGG + chr8_2:35181383-35181402 Msa1245290:CDS 35.0%
TTTCTCTGTCATGTGAAGAA+GGG + chr8_2:35181384-35181403 Msa1245290:CDS 35.0%
! ACATCGCTTGTATATGGTTT+TGG + chr8_2:35181454-35181473 Msa1245290:three_prime_UTR 35.0%
TGATATGCTTATGGTTGTGG+TGG + chr8_2:35178053-35178072 Msa1245290:CDS 40.0%
! ACAAGTGATAGTTTGAAGCC+AGG + chr8_2:35178106-35178125 Msa1245290:CDS 40.0%
! TCCTCGCTATGTTCTAAACA+AGG + chr8_2:35178148-35178167 Msa1245290:CDS 40.0%
! TGTCTTTTAATCGACGGTGA+TGG + chr8_2:35178178-35178197 Msa1245290:CDS 40.0%
ACTGTTGAGTTTACGTCTAC+GGG - chr8_2:35178262-35178281 None:intergenic 40.0%
CAACTTCATTGTTGGGATCA+AGG - chr8_2:35178482-35178501 None:intergenic 40.0%
CTTGATCCCAACAATGAAGT+TGG + chr8_2:35178480-35178499 Msa1245290:CDS 40.0%
CTTGAATGGGAACCAAAACA+AGG + chr8_2:35178583-35178602 Msa1245290:CDS 40.0%
! CTTCCCATCTTTAACTTCGA+AGG - chr8_2:35178752-35178771 None:intergenic 40.0%
ACAATGGTACATTACCTCGA+AGG + chr8_2:35178777-35178796 Msa1245290:CDS 40.0%
CAATGGTACATTACCTCGAA+GGG + chr8_2:35178778-35178797 Msa1245290:CDS 40.0%
AATGGTACATTACCTCGAAG+GGG + chr8_2:35178779-35178798 Msa1245290:CDS 40.0%
GTGATTGCAAGATGAGATGT+TGG + chr8_2:35179013-35179032 Msa1245290:intron 40.0%
TCATGGAATTCGACTCAAGA+TGG + chr8_2:35179099-35179118 Msa1245290:intron 40.0%
TTCGACTCAAGATGGTAACT+TGG + chr8_2:35179107-35179126 Msa1245290:intron 40.0%
ACTCAAGATGGTAACTTGGA+TGG + chr8_2:35179111-35179130 Msa1245290:intron 40.0%
AAGATGGTAACTTGGATGGT+CGG + chr8_2:35179115-35179134 Msa1245290:intron 40.0%
TCGGTTATCCTATTATGCCT+TGG + chr8_2:35179134-35179153 Msa1245290:intron 40.0%
! TGGCTTTACCAAGGCATAAT+AGG - chr8_2:35179145-35179164 None:intergenic 40.0%
TGAAGGATAGGATTAGGGTT+TGG + chr8_2:35179299-35179318 Msa1245290:intron 40.0%
GACAGGAAGTAAAGCTGTAA+AGG - chr8_2:35179565-35179584 None:intergenic 40.0%
!!! CCATGTCCTAACTTGTTTTC+AGG - chr8_2:35179751-35179770 None:intergenic 40.0%
CCTGAAAACAAGTTAGGACA+TGG + chr8_2:35179748-35179767 Msa1245290:CDS 40.0%
GAAAACAAGTTAGGACATGG+AGG + chr8_2:35179751-35179770 Msa1245290:CDS 40.0%
TTTACGACTTCAGGGAATCT+TGG + chr8_2:35180141-35180160 Msa1245290:intron 40.0%
CTTTCAAAAACATCCGGACA+AGG + chr8_2:35180193-35180212 Msa1245290:intron 40.0%
CGAAAAAGAAGCTGCTAGAT+TGG + chr8_2:35180548-35180567 Msa1245290:intron 40.0%
GGCAAGAATGTTCACACAAT+AGG + chr8_2:35180720-35180739 Msa1245290:intron 40.0%
TGTAGAACAAACTCCTTCCA+TGG - chr8_2:35180898-35180917 None:intergenic 40.0%
AAGTCTGACGTCTATAGCTT+TGG + chr8_2:35180918-35180937 Msa1245290:intron 40.0%
GATCGCCCACTAAATCTAAT+AGG + chr8_2:35180996-35181015 Msa1245290:intron 40.0%
TTGTTCCTGATGAAGTGCAA+AGG + chr8_2:35181162-35181181 Msa1245290:CDS 40.0%
ACATAAAATGCCGGTCTTCT+TGG - chr8_2:35181293-35181312 None:intergenic 40.0%
!! GCCTTGTTTAGAACATAGCG+AGG - chr8_2:35178152-35178171 None:intergenic 45.0%
! ACAGTGTTGTTGGAGGATTG+AGG - chr8_2:35178361-35178380 None:intergenic 45.0%
TCAATCCTCCAACAACACTG+TGG + chr8_2:35178360-35178379 Msa1245290:CDS 45.0%
CATAGTTGCCACAGTGTTGT+TGG - chr8_2:35178371-35178390 None:intergenic 45.0%
CAACACTGTGGCAACTATGT+TGG + chr8_2:35178372-35178391 Msa1245290:CDS 45.0%
! TGTTGGGATCAAGGTGTCAT+CGG - chr8_2:35178473-35178492 None:intergenic 45.0%
AGAGACGCGGTAAAGTGTAT+TGG + chr8_2:35178620-35178639 Msa1245290:CDS 45.0%
CATTACCTCGAAGGGGAATT+TGG + chr8_2:35178786-35178805 Msa1245290:CDS 45.0%
! GGGAATTTGGTAGCTGATGA+TGG + chr8_2:35178799-35178818 Msa1245290:CDS 45.0%
GGAGGATAAACCAACTTGCA+GGG + chr8_2:35178903-35178922 Msa1245290:CDS 45.0%
GACTTTGTTACAGGTGGAAG+AGG - chr8_2:35179253-35179272 None:intergenic 45.0%
AAGTTAGGACATGGAGGCTA+CGG + chr8_2:35179757-35179776 Msa1245290:CDS 45.0%
TTCAGGGAATCTTGGCAACA+GGG + chr8_2:35180149-35180168 Msa1245290:intron 45.0%
GAATTCCACGATTCCTTGTC+CGG - chr8_2:35180209-35180228 None:intergenic 45.0%
CTATGTCCCAACAATCCTGT+TGG - chr8_2:35180761-35180780 None:intergenic 45.0%
CATGTCTCCAGAATATGCCA+TGG + chr8_2:35180878-35180897 Msa1245290:intron 45.0%
TCTCCAGAATATGCCATGGA+AGG + chr8_2:35180882-35180901 Msa1245290:intron 45.0%
ACTCCTTCCATGGCATATTC+TGG - chr8_2:35180888-35180907 None:intergenic 45.0%
GCATGGGAGTTATGGAATGA+TGG + chr8_2:35181098-35181117 Msa1245290:CDS 45.0%
ATGCACCTTTGCACTTCATC+AGG - chr8_2:35181170-35181189 None:intergenic 45.0%
! GTGCAAAGGTGCATTCATGT+TGG + chr8_2:35181176-35181195 Msa1245290:CDS 45.0%
CACAAACTTGCCAAGAAGAC+CGG + chr8_2:35181280-35181299 Msa1245290:CDS 45.0%
AGGGGGAAACAACTTCCAAA+GGG + chr8_2:35181330-35181349 Msa1245290:CDS 45.0%
TGCTGTAGTCGAATACGTGT+CGG - chr8_2:35181363-35181382 None:intergenic 45.0%
CTGTTAATGGCACAGGAGTG+TGG + chr8_2:35178218-35178237 Msa1245290:CDS 50.0%
! AGTTGCCACAGTGTTGTTGG+AGG - chr8_2:35178368-35178387 None:intergenic 50.0%
GTGGCAACTATGTTGGACAC+AGG + chr8_2:35178379-35178398 Msa1245290:CDS 50.0%
! GTTGGGATCAAGGTGTCATC+GGG - chr8_2:35178472-35178491 None:intergenic 50.0%
AGCTACCAAATTCCCCTTCG+AGG - chr8_2:35178794-35178813 None:intergenic 50.0%
CGATGGAGGCTGCCAAAAAT+GGG + chr8_2:35178882-35178901 Msa1245290:CDS 50.0%
GGGAGGATAAACCAACTTGC+AGG + chr8_2:35178902-35178921 Msa1245290:CDS 50.0%
AAACCAACTTGCAGGGAACC+TGG + chr8_2:35178910-35178929 Msa1245290:CDS 50.0%
GGTGGAAGAGGCAATGTCTA+CGG - chr8_2:35179241-35179260 None:intergenic 50.0%
AGGCTACGGACCCGTTTATA+AGG + chr8_2:35179771-35179790 Msa1245290:CDS 50.0%
CTTCAGGGAATCTTGGCAAC+AGG + chr8_2:35180148-35180167 Msa1245290:intron 50.0%
AACATCCGGACAAGGAATCG+TGG + chr8_2:35180201-35180220 Msa1245290:intron 50.0%
GAGGGGGAAACAACTTCCAA+AGG + chr8_2:35181329-35181348 Msa1245290:CDS 50.0%
GCGATGGAGGCTGCCAAAAA+TGG + chr8_2:35178881-35178900 Msa1245290:CDS 55.0%
TGGAGGCTGCCAAAAATGGG+AGG + chr8_2:35178885-35178904 Msa1245290:CDS 55.0%
TCACCAGGTTCCCTGCAAGT+TGG - chr8_2:35178916-35178935 None:intergenic 55.0%
AACTTGCAGGGAACCTGGTG+AGG + chr8_2:35178915-35178934 Msa1245290:intron 55.0%
GGAAGAGGCAATGTCTACGG+AGG - chr8_2:35179238-35179257 None:intergenic 55.0%
! CGTGTCGGTGTCTTGCCCTT+TGG - chr8_2:35181348-35181367 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 35178016 35181559 35178016 ID=Msa1245290;Name=Msa1245290
chr8_2 mRNA 35178016 35181559 35178016 ID=Msa1245290-mRNA-1;Parent=Msa1245290;Name=Msa1245290-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.33|0.75|1|1|1|4|144|507
chr8_2 exon 35178016 35178931 35178016 ID=Msa1245290-mRNA-1:exon:11127;Parent=Msa1245290-mRNA-1
chr8_2 exon 35179405 35179512 35179405 ID=Msa1245290-mRNA-1:exon:11128;Parent=Msa1245290-mRNA-1
chr8_2 exon 35179611 35179792 35179611 ID=Msa1245290-mRNA-1:exon:11129;Parent=Msa1245290-mRNA-1
chr8_2 exon 35181098 35181559 35181098 ID=Msa1245290-mRNA-1:exon:11130;Parent=Msa1245290-mRNA-1
chr8_2 CDS 35178016 35178931 35178016 ID=Msa1245290-mRNA-1:cds;Parent=Msa1245290-mRNA-1
chr8_2 CDS 35179405 35179512 35179405 ID=Msa1245290-mRNA-1:cds;Parent=Msa1245290-mRNA-1
chr8_2 CDS 35179611 35179792 35179611 ID=Msa1245290-mRNA-1:cds;Parent=Msa1245290-mRNA-1
chr8_2 CDS 35181098 35181415 35181098 ID=Msa1245290-mRNA-1:cds;Parent=Msa1245290-mRNA-1
chr8_2 three_prime_UTR 35181416 35181559 35181416 ID=Msa1245290-mRNA-1:three_prime_utr;Parent=Msa1245290-mRNA-1
Gene Sequence

>Msa1245290

ATGATGATAAGCTTTAACATAAAGAAACAAATTGTTTTGATATGCTTATGGTTGTGGTGGAGTACTTTTACTAGTATTTGTGTTAATGCAACAAGTGATAGTTTGAAGCCAGGTGATACATTGAATTCCAATTCCTCGCTATGTTCTAAACAAGGCAAGTTTTGTCTTTTAATCGACGGTGATGGTTACTTGACTATACAAACTGTTAATGGCACAGGAGTGTGGATTTATAATGGAAATCAACCCGTAGACGTAAACTCAACAGTTTTATCACTAGACTACACTGGTGTGCTCAAAATAGAATCTCAAAATAGGAAATTACCAATTATCATTTATTCTTCACCTCAATCCTCCAACAACACTGTGGCAACTATGTTGGACACAGGTAACTTTGTGCTTCAAAAACTTCACCCAAATGGGACAAAGAGTTTATTATGGCAGAGTTTTGATTATCCCGATGACACCTTGATCCCAACAATGAAGTTGGGAATTAATCCAAAAACAAGACATAATTGGTCATTGGGTTCATGGTTGACTGATAAACTACCAAATTCAGGAGAATTTAGTCTTGAATGGGAACCAAAACAAGGTGAATTGAACATTAAGAGACGCGGTAAAGTGTATTGGAAAAGCGGAAAACTTAAAAGTAATGGAATATTCGAGAATATTCCAGCCAATGTTCAACATATGTATCAGTACATTATTGTCTCTAACAAGAATGAAGATTCTTTTGCCTTCGAAGTTAAAGATGGGAAGTTTGAACAATGGTACATTACCTCGAAGGGGAATTTGGTAGCTGATGATGGAGTAAGTGCTAGTAGTACGACAAATATTGGAAATGCAGATATGTGTTATGGATATAATAGCGATGGAGGCTGCCAAAAATGGGAGGATAAACCAACTTGCAGGGAACCTGGTAAAAAAAAGTGGATATGGATAGGTTCTGCAATTGCAGCTGCTTTACTCATATTATGCCCAATCATTTTATGCTTAGCCAAAAAGAAACAAAAATATGCACTTCAAGATAAGAAAAGTAAAAGAAAGGATTTGGCGGATTCGACTGAATACTATAATCTCAAAGATCTTGAAGATGAATTCAAGGAACATGATATAAAAGTTTTTAACTTTACATCAATTTTGGAAGCAACTATGGACTTTTCACCTGAAAACAAGTTAGGACATGGAGGCTACGGACCCGTTTATAAGGCATGGGAGTTATGGAATGATGGTGAGTATCTAAAGCTAATGGATCCAACATTAAAGGAAACATTTGTTCCTGATGAAGTGCAAAGGTGCATTCATGTTGGTCTCTTATGTGTAGAGCATTATGCAATTGATCGACCTACAATGTCTAATGTTATATCTGTGTTAACAAACAAATATGAACTCACAAACTTGCCAAGAAGACCGGCATTTTATGTTAGAAGAGAAATCTTTGAGGGGGAAACAACTTCCAAAGGGCAAGACACCGACACGTATTCGACTACAGCAATTTCTCTGTCATGTGAAGAAGGGAACATATAA
Protein sequence

>Msa1245290

MMISFNIKKQIVLICLWLWWSTFTSICVNATSDSLKPGDTLNSNSSLCSKQGKFCLLIDGDGYLTIQTVNGTGVWIYNGNQPVDVNSTVLSLDYTGVLKIESQNRKLPIIIYSSPQSSNNTVATMLDTGNFVLQKLHPNGTKSLLWQSFDYPDDTLIPTMKLGINPKTRHNWSLGSWLTDKLPNSGEFSLEWEPKQGELNIKRRGKVYWKSGKLKSNGIFENIPANVQHMYQYIIVSNKNEDSFAFEVKDGKFEQWYITSKGNLVADDGVSASSTTNIGNADMCYGYNSDGGCQKWEDKPTCREPGKKKWIWIGSAIAAALLILCPIILCLAKKKQKYALQDKKSKRKDLADSTEYYNLKDLEDEFKEHDIKVFNFTSILEATMDFSPENKLGHGGYGPVYKAWELWNDGEYLKLMDPTLKETFVPDEVQRCIHVGLLCVEHYAIDRPTMSNVISVLTNKYELTNLPRRPAFYVRREIFEGETTSKGQDTDTYSTTAISLSCEEGNI*