AlfalfaGEDB | Msa1324610

M. sativa cultivar zhongmu-4 / Msa1324610

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324610	sp\|Q9LW83\|CE101_ARATH	39.364	818	376	22	32	754	25	817	4.94e-162	494

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324610	G7LA23	81.509	795	133	5	1	788	1	788	0.0	1305

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa1324610	0.804121	2.514200e-49	-8.615850e-47
Msa0048320	Msa1324610	0.878442	2.799550e-69	-8.615850e-47
Msa0157290	Msa1324610	0.803687	3.094451e-49	-8.615850e-47
Msa0880140	Msa1324610	0.805997	1.018738e-49	-8.615850e-47
Msa1245290	Msa1324610	0.836830	7.434652e-57	-8.615850e-47
Msa1324530	Msa1324610	0.965477	1.176974e-124	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1324610	MtrunA17_Chr8g0358071	78.094	808	146	10	1	788	2	798	1287
Msa1324610	MtrunA17_Chr8g0357961	77.612	804	158	7	1	784	1	802	1283
Msa1324610	MtrunA17_Chr8g0358031	79.822	788	133	7	1	769	2	782	1275
Msa1324610	MtrunA17_Chr8g0357991	77.612	804	159	7	1	784	1	803	1261
Msa1324610	MtrunA17_Chr8g0358081	77.431	802	148	9	1	788	1	783	1244
Msa1324610	MtrunA17_Chr8g0358121	79.452	803	132	8	1	788	1	785	1240
Msa1324610	MtrunA17_Chr8g0358101	76.646	805	152	9	1	788	1	786	1222
Msa1324610	MtrunA17_Chr8g0357881	74.907	805	173	7	1	788	7	799	1193
Msa1324610	MtrunA17_Chr8g0357981	84.069	634	90	2	159	788	1	627	1092
Msa1324610	MtrunA17_Chr8g0357691	56.736	772	292	18	10	756	14	768	813

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324610	AT3G16030.1	39.364	818	376	22	32	754	25	817	5.03e-163	494
Msa1324610	AT3G16030.6	40.052	774	354	19	72	754	84	838	9.69e-163	494
Msa1324610	AT1G67520.4	41.289	729	317	18	73	754	79	743	1.70e-162	490
Msa1324610	AT1G67520.3	40.570	737	354	19	73	754	79	786	1.09e-160	487
Msa1324610	AT1G67520.6	40.566	742	347	17	73	754	86	793	1.79e-160	486
Msa1324610	AT3G16030.2	40.625	704	311	17	141	754	8	694	1.69e-152	463
Msa1324610	AT1G65790.1	37.113	776	410	18	71	782	77	838	3.74e-149	458
Msa1324610	AT4G21380.1	36.342	831	445	22	19	782	32	845	8.31e-149	457
Msa1324610	AT4G21390.1	36.550	829	421	23	11	757	13	818	6.78e-144	444
Msa1324610	AT1G11340.1	36.352	773	396	22	71	769	67	817	3.13e-143	442

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Find 139 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACTTGCAGGGAACC+TGG	0.512863	8_4:+34905330	Msa1324610:CDS
AAATAAAGAAACAAATTGTT+TGG	0.308610	8_4:+34904452	Msa1324610:CDS
AAATCAGCTCGAAATTCCCA+TGG	0.640437	8_4:+34905588	Msa1324610:CDS
AAATGACACATTTGTTTCTG+AGG	0.566883	8_4:+34907586	Msa1324610:CDS
AAATTGTTTGGATATACTTA+TGG	0.310580	8_4:+34904464	Msa1324610:CDS
AACAAGACATAATTGGTCAT+TGG	0.352149	8_4:+34904936	Msa1324610:CDS
AACATCTGGACAAGGAATTG+TGG	0.543307	8_4:+34906663	Msa1324610:CDS
AACTGTTGAGTTTACGTCTA+CGG	0.436467	8_4:-34904680	None:intergenic
AACTTGCAGGGAACCTGGTG+AGG	0.570811	8_4:+34905335	Msa1324610:CDS
AAGATAGGAAGTTTGAACAA+TGG	0.642233	8_4:+34905181	Msa1324610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTATTCTCCTTTGGATT+TGG	+	chr8_4:34904374-34904393	Msa1324610:intron	30.0%
AATATACTCACCAAATCCAA+AGG	-	chr8_4:34904387-34904406	None:intergenic	30.0%
TTTGGATATACTTATGGTTG+TGG	+	chr8_4:34904470-34904489	Msa1324610:CDS	30.0%
ATAAATACTGTTAATGGCAC+AGG	+	chr8_4:34904631-34904650	Msa1324610:CDS	30.0%
TAATTCCCAACTTCATTGTT+GGG	-	chr8_4:34904909-34904928	None:intergenic	30.0%
TTAATTCCCAACTTCATTGT+TGG	-	chr8_4:34904910-34904929	None:intergenic	30.0%
AACAAGACATAATTGGTCAT+TGG	+	chr8_4:34904936-34904955	Msa1324610:CDS	30.0%
ACAAGACATAATTGGTCATT+GGG	+	chr8_4:34904937-34904956	Msa1324610:CDS	30.0%
ACTGATAAACTACCAAATTC+AGG	+	chr8_4:34904970-34904989	Msa1324610:CDS	30.0%
AGACTAAATTCACCTGAATT+TGG	-	chr8_4:34904985-34905004	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	34904315	34908058	34904315	ID=Msa1324610;Name=Msa1324610
chr8_4	mRNA	34904315	34908058	34904315	ID=Msa1324610-mRNA-1;Parent=Msa1324610;Name=Msa1324610-mRNA-1;_AED=0.33;_eAED=0.33;_QI=94\|1\|1\|1\|0.85\|0.75\|8\|208\|788
chr8_4	exon	34904315	34904384	34904315	ID=Msa1324610-mRNA-1:exon:11096;Parent=Msa1324610-mRNA-1
chr8_4	exon	34904415	34905609	34904415	ID=Msa1324610-mRNA-1:exon:11097;Parent=Msa1324610-mRNA-1
chr8_4	exon	34905825	34905932	34905825	ID=Msa1324610-mRNA-1:exon:11098;Parent=Msa1324610-mRNA-1
chr8_4	exon	34906043	34906212	34906043	ID=Msa1324610-mRNA-1:exon:11099;Parent=Msa1324610-mRNA-1
chr8_4	exon	34906616	34906826	34906616	ID=Msa1324610-mRNA-1:exon:11100;Parent=Msa1324610-mRNA-1
chr8_4	exon	34906991	34907228	34906991	ID=Msa1324610-mRNA-1:exon:11101;Parent=Msa1324610-mRNA-1
chr8_4	exon	34907307	34907457	34907307	ID=Msa1324610-mRNA-1:exon:11102;Parent=Msa1324610-mRNA-1
chr8_4	exon	34907533	34908058	34907533	ID=Msa1324610-mRNA-1:exon:11103;Parent=Msa1324610-mRNA-1
chr8_4	five_prime_UTR	34904315	34904384	34904315	ID=Msa1324610-mRNA-1:five_prime_utr;Parent=Msa1324610-mRNA-1
chr8_4	five_prime_UTR	34904415	34904438	34904415	ID=Msa1324610-mRNA-1:five_prime_utr;Parent=Msa1324610-mRNA-1
chr8_4	CDS	34904439	34905609	34904439	ID=Msa1324610-mRNA-1:cds;Parent=Msa1324610-mRNA-1
chr8_4	CDS	34905825	34905932	34905825	ID=Msa1324610-mRNA-1:cds;Parent=Msa1324610-mRNA-1
chr8_4	CDS	34906043	34906212	34906043	ID=Msa1324610-mRNA-1:cds;Parent=Msa1324610-mRNA-1
chr8_4	CDS	34906616	34906826	34906616	ID=Msa1324610-mRNA-1:cds;Parent=Msa1324610-mRNA-1
chr8_4	CDS	34906991	34907228	34906991	ID=Msa1324610-mRNA-1:cds;Parent=Msa1324610-mRNA-1
chr8_4	CDS	34907307	34907457	34907307	ID=Msa1324610-mRNA-1:cds;Parent=Msa1324610-mRNA-1
chr8_4	CDS	34907533	34907850	34907533	ID=Msa1324610-mRNA-1:cds;Parent=Msa1324610-mRNA-1
chr8_4	three_prime_UTR	34907851	34908058	34907851	ID=Msa1324610-mRNA-1:three_prime_utr;Parent=Msa1324610-mRNA-1

Gene Sequence

>Msa1324610

ATGATAAGCTTTAAAATAAAGAAACAAATTGTTTGGATATACTTATGGTTGTGGTTGAGTACTACTGCTAATATTTGTGTTAAAGCAACAAATGATAGTTTGAAGCCAGGTGATACATTGAATTCCAATTCCTCGCTATGTTCTAAACAAGGCATGTTTTGTCTTTTAATCGACGGTGATGGTTACTTGACTATAAATACTGTTAATGGCACAGGAGTGTGGATTTATAATGGGAATCGACCCGTAGACGTAAACTCAACAGTTTTATCACTAGACTACACTGGAGTGCTCAAAATAGAATCTCAAAATAGGAAATTATCAATTATCATTTATTCTTCACCTCAACCCTCCAACAAGACTGTGGCAACTATGTTAGACACGGGTAACTTTGTGCTTCAACAACTTCACCCAAATGGGACAAAGAATATATTATGGCAGAGTTTTGATTATCCCACAGACACTTTGATCCCAACAATGAAGTTGGGAATTAATCGAAAAACAAGACATAATTGGTCATTGGGTTCATGGTTGACTGATAAACTACCAAATTCAGGTGAATTTAGTCTTGAATGGGAACCAAAACAAGGTGAATTGAACATTAAGAGACGCGGCAAAGTGTATTGGAAAAGCGGAAAACTTAAAAGTAATGGAATATTCGAGAATATACCAGCCAATGTTCAACATATGTATCAGTACATTATTGTCTCTAATAAGGATGAAGATTCTTTTGCTTTCGAAGTCAAAGATAGGAAGTTTGAACAATGGTACATTACCTCGAAGGGGATGTTGGTAGCTGATGATGGAGTAAGTGCTAGTAGTAAGACAGATATTGGAAATGCAGATATGTGTTATGGATATAATAGTGATGGAGGGTGCCAAAAATGGGAGGATAAACCAACTTGCAGGGAACCTGGTGAGGTTTTTCAGATAAAGGCGGGAACACCATACAAAAACAATATAACAACCATTGAACGTGATGTGACTTATGGTTACAGTGATTGCAAGATGAGATGTTGGAGAAATTGTAATTGCAATGCATTCCAAGAATTATATGAAAATTTGACCGGATGTGTATTCTATTCATGGAATTCGACACAAGATGGTAATTTGGATGGTCGGTTATCCTTTTATGCCTTGGTAAAGCCAACAAAATCAGCTCGAAATTCCCATGGTAAAAAAAAGTGGATATGGATAGGTTCTGCGATCGCAGCTGCTTTACTCATATTATGCCCAATCATTTTGTGCTTAGCCAAAAAGAAACAAAAATATGCACTACAAGATAGGAAAAGTAAAAGAAAGGATCTTGAATACTATAATCTCAAAGATCTTGAAGATGACTTCAAGGAACATGATATAAAAGTTTTTAACTTTACATCAATTTTGGAGGCAACTATGGACTTTTCACCTGAAAACAAGTTAGGACATGGAGGCTATGGACCCGTTTATAAGGGAATTTTGGCAACAGGGCAAGAAGTTGCTGTAAAAAGACTTTCAAAAACATCTGGACAAGGAATTGTGGAATTCAAAAATGAATTGGTACTTATATGTGAACTTCAGCACACAAATCTTGTACAACTACTTGGTTGTTGCATTCATGAAGAAGAAAGGATTCTAATTTACGAATATATGCCTAACAAAAGCTTGGATTTCTATCTATTTGATTGTACAAAAAAGAAGCTGCTAGATTGGAAGAAACGTTTTAACATAATTGAAGGAATTGCTCAAGGATTGCTCTATCTTCACAAGTATTCAAGACTCAAAATCATTCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAATATGAACCCAAAAATTTCTGATTTTGGCATGGCAAGAATGTTCACACAACAGGAATCCGTAGTAAATACCAACAGGATTGTTGGGACATATGGATATATGTCTCCAGAATATGCCATGGAAGGAGTTTGTTCTACAAAGTCTGACGTCTATAGCTTTGGAGTGTTGCTTCTTGAAATCGTTTGTGGGAGAAAAAACAATAGCTTCTATGATGTTGATCGCCCACTAAATCTAATAGGACAAGCATGGGAGTTATGGAATGATGGTGAGTATCTAAAGCTAATGGATCCAACATTAAATGACACATTTGTTTCTGAGGAAGTGCAAAGGTGCATTCATGTTGGTCTCTTATGTGTAGAGCATTATGCAATTGATCGACCTACAATGTCTGATGTTATATCTGTGTTAACAAACAAATATGAACTCACAAACTTGCCAAGAAGACCGGCATTTTATGTTAGAAGAGAAATCTTTGAGGGGGAAACAACTTCCAAAGGGCAAGACACCGACACGTATTCTACGACAGCAATTTCTATGTCCTGTGAAGAAGGGAGCATATAA

Protein sequence

>Msa1324610

MISFKIKKQIVWIYLWLWLSTTANICVKATNDSLKPGDTLNSNSSLCSKQGMFCLLIDGDGYLTINTVNGTGVWIYNGNRPVDVNSTVLSLDYTGVLKIESQNRKLSIIIYSSPQPSNKTVATMLDTGNFVLQQLHPNGTKNILWQSFDYPTDTLIPTMKLGINRKTRHNWSLGSWLTDKLPNSGEFSLEWEPKQGELNIKRRGKVYWKSGKLKSNGIFENIPANVQHMYQYIIVSNKDEDSFAFEVKDRKFEQWYITSKGMLVADDGVSASSKTDIGNADMCYGYNSDGGCQKWEDKPTCREPGEVFQIKAGTPYKNNITTIERDVTYGYSDCKMRCWRNCNCNAFQELYENLTGCVFYSWNSTQDGNLDGRLSFYALVKPTKSARNSHGKKKWIWIGSAIAAALLILCPIILCLAKKKQKYALQDRKSKRKDLEYYNLKDLEDDFKEHDIKVFNFTSILEATMDFSPENKLGHGGYGPVYKGILATGQEVAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDFYLFDCTKKKLLDWKKRFNIIEGIAQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESVVNTNRIVGTYGYMSPEYAMEGVCSTKSDVYSFGVLLLEIVCGRKNNSFYDVDRPLNLIGQAWELWNDGEYLKLMDPTLNDTFVSEEVQRCIHVGLLCVEHYAIDRPTMSDVISVLTNKYELTNLPRRPAFYVRREIFEGETTSKGQDTDTYSTTAISMSCEEGSI*