Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245780 | XP_013444645.1 | 99.415 | 171 | 1 | 0 | 7 | 177 | 193 | 363 | 5.72e-115 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0659300 | Msa1245780 | -0.810462 | 1.139091e-50 | -8.615850e-47 |
| Msa1245780 | Msa1315520 | -0.809544 | 1.795869e-50 | -8.615850e-47 |
| Msa0583710 | Msa1245780 | 0.860445 | 2.056017e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245780 | MtrunA17_Chr8g0347131 | 99.415 | 171 | 1 | 0 | 7 | 177 | 193 | 363 | 5.26e-119 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245780 | AT2G46420.3 | 68.391 | 174 | 45 | 4 | 7 | 174 | 193 | 362 | 7.64e-71 | 218 |
| Msa1245780 | AT2G46420.1 | 68.391 | 174 | 45 | 4 | 7 | 174 | 193 | 362 | 7.64e-71 | 218 |
| Msa1245780 | AT2G46420.2 | 69.281 | 153 | 40 | 2 | 7 | 155 | 193 | 342 | 1.14e-63 | 199 |
| Msa1245780 | AT3G61700.1 | 63.277 | 177 | 45 | 7 | 7 | 175 | 195 | 359 | 1.07e-59 | 190 |
| Msa1245780 | AT3G61700.3 | 63.277 | 177 | 45 | 7 | 7 | 175 | 195 | 359 | 1.07e-59 | 190 |
| Msa1245780 | AT3G61700.4 | 63.277 | 177 | 45 | 7 | 7 | 175 | 193 | 357 | 1.16e-59 | 189 |
| Msa1245780 | AT3G61700.2 | 61.538 | 182 | 45 | 8 | 7 | 175 | 195 | 364 | 2.79e-57 | 184 |
Find 89 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCCCATTCGGATGAATTC+TGG | 0.145118 | 8_2:+35964078 | Msa1245780:CDS |
| TTTGAGATATATCTATTATT+AGG | 0.161419 | 8_2:+35966536 | Msa1245780:three_prime_UTR |
| TTAGGTTAGGGAGAAAATTT+AGG | 0.243691 | 8_2:+35966362 | Msa1245780:three_prime_UTR |
| CTTGTTGCACATTAATTCTT+AGG | 0.275223 | 8_2:+35966344 | Msa1245780:three_prime_UTR |
| AATTCAATGTAATTTCTTCT+TGG | 0.281966 | 8_2:+35966654 | Msa1245780:three_prime_UTR |
| TGTAATTCATTTGATGCATT+TGG | 0.283357 | 8_2:+35966583 | Msa1245780:three_prime_UTR |
| TTGAGATATATCTATTATTA+GGG | 0.298619 | 8_2:+35966537 | Msa1245780:three_prime_UTR |
| AATAAATTACCTCCCAAGTT+TGG | 0.334177 | 8_2:-35964996 | None:intergenic |
| CTTGCACCGGATGGCGGGAA+TGG | 0.339819 | 8_2:+35964909 | Msa1245780:CDS |
| TCAAGTTGTCATGTGGTTAA+TGG | 0.343627 | 8_2:+35964035 | Msa1245780:exon |
| ATTCAATGTAATTTCTTCTT+GGG | 0.345154 | 8_2:+35966655 | Msa1245780:three_prime_UTR |
| CTTTCCTCCCCTTAAGTTGA+AGG | 0.350001 | 8_2:-35966318 | None:intergenic |
| TGCACATTAATTCTTAGGTT+AGG | 0.360279 | 8_2:+35966349 | Msa1245780:three_prime_UTR |
| AACCGCAGATTTACCAAACT+TGG | 0.370682 | 8_2:+35964983 | Msa1245780:CDS |
| GCACATTAATTCTTAGGTTA+GGG | 0.384750 | 8_2:+35966350 | Msa1245780:three_prime_UTR |
| GGACCACAGTGCTCCTGATA+TGG | 0.385772 | 8_2:+35964704 | Msa1245780:CDS |
| GAGGAGAAACCTTCAACTTA+AGG | 0.399945 | 8_2:+35966309 | Msa1245780:CDS |
| CGCAGTCAACAATCTACCTA+TGG | 0.410033 | 8_2:+35963944 | None:intergenic |
| ACCCCATTCGGATGAATTCT+GGG | 0.411528 | 8_2:+35964079 | Msa1245780:CDS |
| TTGCACCGGATGGCGGGAAT+GGG | 0.417671 | 8_2:+35964910 | Msa1245780:CDS |
| GCTTGAATCTCCAGATCAAC+AGG | 0.418289 | 8_2:+35965706 | Msa1245780:CDS |
| TTCACTGCATCAGAAATATC+AGG | 0.419762 | 8_2:+35964816 | Msa1245780:CDS |
| TCTCCAGATCAACAGGATAT+AGG | 0.424911 | 8_2:+35965713 | Msa1245780:CDS |
| TGCAGCTTGCACCGGATGGC+GGG | 0.428704 | 8_2:+35964904 | Msa1245780:CDS |
| TTCCCAGAATTCATCCGAAT+GGG | 0.429662 | 8_2:-35964081 | None:intergenic |
| ACCACTGATGTTGGACTCAC+TGG | 0.432569 | 8_2:-35964774 | None:intergenic |
| TTACCTATATCCTGTTGATC+TGG | 0.436551 | 8_2:-35965716 | None:intergenic |
| AGCCGCAGGTCAGCCTCATA+TGG | 0.443308 | 8_2:+35963998 | Msa1245780:five_prime_UTR |
| TAAATTTATATATTGTTGCT+TGG | 0.443412 | 8_2:+35966613 | Msa1245780:three_prime_UTR |
| ATCTAGCTTACTTGGCATGC+AGG | 0.445337 | 8_2:+35966401 | Msa1245780:three_prime_UTR |
| CGAGCAATTTCCACCCCATT+CGG | 0.456487 | 8_2:+35964067 | Msa1245780:CDS |
| TTTGCAGATCTTGGAGCTCT+AGG | 0.459587 | 8_2:+35965638 | Msa1245780:intron |
| TCCTCATCTGATTGAGAGCA+TGG | 0.469797 | 8_2:-35966291 | None:intergenic |
| TAATTCTGATGTGGTAAGTT+CGG | 0.471070 | 8_2:+35964875 | Msa1245780:CDS |
| ATGTCATCATCTAGCTTACT+TGG | 0.475503 | 8_2:+35966393 | Msa1245780:three_prime_UTR |
| AGGAGAAACCTTCAACTTAA+GGG | 0.477107 | 8_2:+35966310 | Msa1245780:CDS |
| GAGAGGTGAAGACAGTGCTT+AGG | 0.483895 | 8_2:+35966559 | Msa1245780:three_prime_UTR |
| GAAATCCCATTCCCGCCATC+CGG | 0.484584 | 8_2:-35964915 | None:intergenic |
| GGAATCATAGGAGCCATATC+AGG | 0.485066 | 8_2:-35964717 | None:intergenic |
| ATATGAGGCTGACCTGCGGC+TGG | 0.488258 | 8_2:-35963996 | None:intergenic |
| TGGAGCTCTAGGAAACTATC+CGG | 0.489098 | 8_2:+35965649 | Msa1245780:CDS |
| ATAGGATGCTGCTGTAGTAC+TGG | 0.491737 | 8_2:-35963972 | None:intergenic |
| TGCATCAGAAATATCAGGAA+TGG | 0.502982 | 8_2:+35964821 | Msa1245780:CDS |
| GAATGGGATTTCTAGATCGC+TGG | 0.503985 | 8_2:+35964926 | Msa1245780:CDS |
| CAGCATCCTATGCCAGCCGC+AGG | 0.510852 | 8_2:+35963984 | Msa1245780:five_prime_UTR |
| AATCTGCGGTTAAATCTGAT+AGG | 0.511665 | 8_2:-35964971 | None:intergenic |
| GATATTTCTGATGCAGTGAA+AGG | 0.513754 | 8_2:-35964813 | None:intergenic |
| TCAGCCTCATATGGACTCCA+TGG | 0.515218 | 8_2:+35964007 | Msa1245780:five_prime_UTR |
| TGGTTATTGAAGCATGGTGA+TGG | 0.519374 | 8_2:+35964683 | Msa1245780:intron |
| TTGCAGCTTGCACCGGATGG+CGG | 0.530645 | 8_2:+35964903 | Msa1245780:CDS |
| ATATATTATATAATAAGATA+AGG | 0.541725 | 8_2:-35966450 | None:intergenic |
| ACCGCAGATTTACCAAACTT+GGG | 0.542890 | 8_2:+35964984 | Msa1245780:CDS |
| GGTAGGATTGCAGCTTGCAC+CGG | 0.543199 | 8_2:+35964896 | Msa1245780:CDS |
| GCATCAGAAATATCAGGAAT+GGG | 0.543436 | 8_2:+35964822 | Msa1245780:CDS |
| AATATATTTCATTATTACTG+TGG | 0.546740 | 8_2:+35966466 | Msa1245780:three_prime_UTR |
| TCTGATGTGGTAAGTTCGGT+AGG | 0.551727 | 8_2:+35964879 | Msa1245780:CDS |
| GGCTGACCTGCGGCTGGCAT+AGG | 0.554669 | 8_2:-35963990 | None:intergenic |
| ATTCCCAGAATTCATCCGAA+TGG | 0.557362 | 8_2:-35964082 | None:intergenic |
| ATATTTCTGATGCAGTGAAA+GGG | 0.559561 | 8_2:-35964812 | None:intergenic |
| CCACTCGATACCACTGATGT+TGG | 0.561378 | 8_2:-35964783 | None:intergenic |
| GGATTGCAGCTTGCACCGGA+TGG | 0.563524 | 8_2:+35964900 | Msa1245780:CDS |
| TTCAGCATTTAATTCTGATG+TGG | 0.577584 | 8_2:+35964866 | Msa1245780:CDS |
| CGAATGGGGTGGAAATTGCT+CGG | 0.583725 | 8_2:-35964066 | None:intergenic |
| ATGCCCATGGAGTCCATATG+AGG | 0.589725 | 8_2:-35964011 | None:intergenic |
| GCTCCTATGATTCCACAAAA+CGG | 0.596239 | 8_2:+35964726 | Msa1245780:CDS |
| GCAGTCAACAATCTACCTAT+GGG | 0.598154 | 8_2:+35963945 | None:intergenic |
| CTATACTGTAACCGAAGTGT+AGG | 0.601952 | 8_2:+35966424 | Msa1245780:three_prime_UTR |
| ACTCACTGGCATTTCTGAGA+CGG | 0.603360 | 8_2:-35964760 | None:intergenic |
| AGCAACATGTCTGAATCAGA+TGG | 0.604874 | 8_2:-35965686 | None:intergenic |
| ATATATCTATTATTAGGGAG+AGG | 0.605655 | 8_2:+35966542 | Msa1245780:three_prime_UTR |
| CAGCCTCATATGGACTCCAT+GGG | 0.606700 | 8_2:+35964008 | Msa1245780:five_prime_UTR |
| GATCGCTGGATCAAATTCAG+TGG | 0.616974 | 8_2:+35964940 | Msa1245780:CDS |
| TGTAGTACTGGATATCCCAT+AGG | 0.618753 | 8_2:-35963960 | None:intergenic |
| CAGAATTCATCCGAATGGGG+TGG | 0.618756 | 8_2:-35964077 | None:intergenic |
| GGAGAAACCTTCAACTTAAG+GGG | 0.620998 | 8_2:+35966311 | Msa1245780:exon |
| GCCAGTGAGTCCAACATCAG+TGG | 0.623937 | 8_2:+35964773 | Msa1245780:CDS |
| TCCATGCTCTCAATCAGATG+AGG | 0.630730 | 8_2:+35966290 | Msa1245780:CDS |
| GGAGCTCTAGGAAACTATCC+GGG | 0.632052 | 8_2:+35965650 | Msa1245780:CDS |
| AGATAAGGCTGCCTACACTT+CGG | 0.633196 | 8_2:-35966435 | None:intergenic |
| TCCCAAGTTTGGTAAATCTG+CGG | 0.636909 | 8_2:-35964985 | None:intergenic |
| ATGACAACTTGACATGCCCA+TGG | 0.641314 | 8_2:-35964024 | None:intergenic |
| GAAACCTTCAACTTAAGGGG+AGG | 0.654911 | 8_2:+35966314 | Msa1245780:exon |
| TCCCAGAATTCATCCGAATG+GGG | 0.663350 | 8_2:-35964080 | None:intergenic |
| CCAACATCAGTGGTATCGAG+TGG | 0.692805 | 8_2:+35964783 | Msa1245780:CDS |
| TCATCTGATTGAGAGCATGG+AGG | 0.698983 | 8_2:-35966288 | None:intergenic |
| GCAGATTTACCAAACTTGGG+AGG | 0.702451 | 8_2:+35964987 | Msa1245780:CDS |
| GTCCATATGAGGCTGACCTG+CGG | 0.704335 | 8_2:-35964000 | None:intergenic |
| GGGCATGTCAAGTTGTCATG+TGG | 0.709494 | 8_2:+35964028 | Msa1245780:exon |
| GAGCCATATCAGGAGCACTG+TGG | 0.763542 | 8_2:-35964707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAATTAAAAAAA+AGG | - | chr8_2:35964642-35964661 | None:intergenic | 0.0% |
| !! | TCAAAAGTAATAAGATTTAT+TGG | - | chr8_2:35964401-35964420 | None:intergenic | 15.0% |
| !!! | TCAAAAGATACAAAATATTT+TGG | + | chr8_2:35965450-35965469 | Msa1245780:intron | 15.0% |
| !! | CATCAAAGTTATTAAAATTT+AGG | - | chr8_2:35965775-35965794 | None:intergenic | 15.0% |
| !! | AATATATTTCATTATTACTG+TGG | + | chr8_2:35966466-35966485 | Msa1245780:three_prime_UTR | 15.0% |
| !!! | TTTGAGATATATCTATTATT+AGG | + | chr8_2:35966536-35966555 | Msa1245780:three_prime_UTR | 15.0% |
| !! | TTGAGATATATCTATTATTA+GGG | + | chr8_2:35966537-35966556 | Msa1245780:three_prime_UTR | 15.0% |
| !! | TAAATTTATATATTGTTGCT+TGG | + | chr8_2:35966613-35966632 | Msa1245780:three_prime_UTR | 15.0% |
| !! | AGATACATAAAATGATATCA+TGG | - | chr8_2:35964138-35964157 | None:intergenic | 20.0% |
| !! | AATGCATACAAATTAAATTC+TGG | + | chr8_2:35964215-35964234 | Msa1245780:intron | 20.0% |
| !! | TGACAATTAAAAATGAATAG+AGG | + | chr8_2:35964586-35964605 | Msa1245780:intron | 20.0% |
| !! | GACAATTAAAAATGAATAGA+GGG | + | chr8_2:35964587-35964606 | Msa1245780:intron | 20.0% |
| !! | TAATAAGCACTTAATTAATC+TGG | - | chr8_2:35965065-35965084 | None:intergenic | 20.0% |
| !! | TCTCAAATATAAGGAAAAAT+TGG | + | chr8_2:35965099-35965118 | Msa1245780:intron | 20.0% |
| !! | TCAAATAAGTTAATTGAAAC+AGG | + | chr8_2:35966090-35966109 | Msa1245780:intron | 20.0% |
| !! | AATTCAATGTAATTTCTTCT+TGG | + | chr8_2:35966654-35966673 | Msa1245780:three_prime_UTR | 20.0% |
| !! | ATTCAATGTAATTTCTTCTT+GGG | + | chr8_2:35966655-35966674 | Msa1245780:three_prime_UTR | 20.0% |
| ! | ATATCATGGTATGATTTGAT+TGG | - | chr8_2:35964124-35964143 | None:intergenic | 25.0% |
| ! | CATTGTCATATAGATATTTG+TGG | - | chr8_2:35964161-35964180 | None:intergenic | 25.0% |
| ! | TATCTATATGACAATGTGAA+TGG | + | chr8_2:35964165-35964184 | Msa1245780:intron | 25.0% |
| !!! | TCCTTTTTAGTTGTCATTTT+AGG | + | chr8_2:35964352-35964371 | Msa1245780:intron | 25.0% |
| ! | TCCTAAAATGACAACTAAAA+AGG | - | chr8_2:35964356-35964375 | None:intergenic | 25.0% |
| !! | ATAAGATTTATTGGTTGTCT+TGG | - | chr8_2:35964392-35964411 | None:intergenic | 25.0% |
| !!! | ATTTCTCTCTGGAATAAATA+AGG | + | chr8_2:35964479-35964498 | Msa1245780:intron | 25.0% |
| !!! | TTTCTCTCTGGAATAAATAA+GGG | + | chr8_2:35964480-35964499 | Msa1245780:intron | 25.0% |
| ! | TTTGAAGACGATAAGTAAAT+AGG | + | chr8_2:35964539-35964558 | Msa1245780:intron | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATA+TGG | + | chr8_2:35965122-35965141 | Msa1245780:intron | 25.0% |
| !!! | GATGTATTTGGTTCAAATTT+TGG | - | chr8_2:35965149-35965168 | None:intergenic | 25.0% |
| ! | CAAAGAAAGTTTGATGTATT+TGG | - | chr8_2:35965161-35965180 | None:intergenic | 25.0% |
| ! | TAAGTAGACTTGAAATTGAT+AGG | - | chr8_2:35965520-35965539 | None:intergenic | 25.0% |
| !!! | ACTACTATTTTGAAGTCTTA+GGG | - | chr8_2:35965578-35965597 | None:intergenic | 25.0% |
| !! | TATTTTCGCAATGAAATATG+TGG | + | chr8_2:35965610-35965629 | Msa1245780:intron | 25.0% |
| ! | ATAACTTTGATGAATCATAG+CGG | + | chr8_2:35965783-35965802 | Msa1245780:intron | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+CGG | - | chr8_2:35966080-35966099 | None:intergenic | 25.0% |
| ! | GAAGAACATATTAACTCTAT+AGG | - | chr8_2:35966153-35966172 | None:intergenic | 25.0% |
| ! | ATATATCTATTATTAGGGAG+AGG | + | chr8_2:35966542-35966561 | Msa1245780:three_prime_UTR | 25.0% |
| ! | TGTAATTCATTTGATGCATT+TGG | + | chr8_2:35966583-35966602 | Msa1245780:three_prime_UTR | 25.0% |
| !! | ATTACATTGAATTTTGCAGA+GGG | - | chr8_2:35966647-35966666 | None:intergenic | 25.0% |
| !! | AATTACATTGAATTTTGCAG+AGG | - | chr8_2:35966648-35966667 | None:intergenic | 25.0% |
| ! | ATTTTATGCCTTGATCATTG+TGG | + | chr8_2:35964298-35964317 | Msa1245780:intron | 30.0% |
| ! | TCATTTCATCTATTTCTCTC+TGG | + | chr8_2:35964468-35964487 | Msa1245780:intron | 30.0% |
| ! | TAAAAATGAATAGAGGGTGT+AGG | + | chr8_2:35964593-35964612 | Msa1245780:intron | 30.0% |
| ! | ATATTTCTGATGCAGTGAAA+GGG | - | chr8_2:35964815-35964834 | None:intergenic | 30.0% |
| TTCAGCATTTAATTCTGATG+TGG | + | chr8_2:35964866-35964885 | Msa1245780:CDS | 30.0% | |
| TAATTCTGATGTGGTAAGTT+CGG | + | chr8_2:35964875-35964894 | Msa1245780:CDS | 30.0% | |
| AATAAATTACCTCCCAAGTT+TGG | - | chr8_2:35964999-35965018 | None:intergenic | 30.0% | |
| TTAGATATATAGATCCTGCT+TGG | + | chr8_2:35965035-35965054 | Msa1245780:intron | 30.0% | |
| ! | AGTTACTTATATTTGAGACC+CGG | + | chr8_2:35965184-35965203 | Msa1245780:intron | 30.0% |
| GCAAGCATAGAAATTGTTAA+TGG | - | chr8_2:35965481-35965500 | None:intergenic | 30.0% | |
| !!! | GACTACTATTTTGAAGTCTT+AGG | - | chr8_2:35965579-35965598 | None:intergenic | 30.0% |
| TTGCGAAAATACATCATGAT+AGG | - | chr8_2:35965601-35965620 | None:intergenic | 30.0% | |
| GATTGTCAACTAAATCTTGT+AGG | - | chr8_2:35965810-35965829 | None:intergenic | 30.0% | |
| ATAAACGCTTAACTATGTTG+TGG | - | chr8_2:35965855-35965874 | None:intergenic | 30.0% | |
| AGGTAAGATGTAAGTATCTT+TGG | - | chr8_2:35966225-35966244 | None:intergenic | 30.0% | |
| GATACTTACATCTTACCTTA+TGG | + | chr8_2:35966227-35966246 | Msa1245780:intron | 30.0% | |
| CCACTGAAATTAAAACCATA+AGG | - | chr8_2:35966245-35966264 | None:intergenic | 30.0% | |
| !!! | CCTTATGGTTTTAATTTCAG+TGG | + | chr8_2:35966242-35966261 | Msa1245780:intron | 30.0% |
| CTTGTTGCACATTAATTCTT+AGG | + | chr8_2:35966344-35966363 | Msa1245780:three_prime_UTR | 30.0% | |
| TGCACATTAATTCTTAGGTT+AGG | + | chr8_2:35966349-35966368 | Msa1245780:three_prime_UTR | 30.0% | |
| GCACATTAATTCTTAGGTTA+GGG | + | chr8_2:35966350-35966369 | Msa1245780:three_prime_UTR | 30.0% | |
| TTAGGTTAGGGAGAAAATTT+AGG | + | chr8_2:35966362-35966381 | Msa1245780:three_prime_UTR | 30.0% | |
| ! | TCAAGTTGTCATGTGGTTAA+TGG | + | chr8_2:35964035-35964054 | Msa1245780:exon | 35.0% |
| AGTAAAACCTAAGTGCATGA+CGG | - | chr8_2:35964324-35964343 | None:intergenic | 35.0% | |
| GACAACTAAAAAGGAACTGA+GGG | - | chr8_2:35964347-35964366 | None:intergenic | 35.0% | |
| TGACAACTAAAAAGGAACTG+AGG | - | chr8_2:35964348-35964367 | None:intergenic | 35.0% | |
| ! | AATAGAGGGTGTAGGTTAAT+TGG | + | chr8_2:35964601-35964620 | Msa1245780:intron | 35.0% |
| GTAGGTTAATTGGTTGAATG+CGG | + | chr8_2:35964611-35964630 | Msa1245780:intron | 35.0% | |
| !! | AGTAATTTGCTCTGCATTTG+TGG | + | chr8_2:35964663-35964682 | Msa1245780:intron | 35.0% |
| CATTTGTGGTTATTGAAGCA+TGG | + | chr8_2:35964677-35964696 | Msa1245780:intron | 35.0% | |
| ! | GATATTTCTGATGCAGTGAA+AGG | - | chr8_2:35964816-35964835 | None:intergenic | 35.0% |
| TTCACTGCATCAGAAATATC+AGG | + | chr8_2:35964816-35964835 | Msa1245780:CDS | 35.0% | |
| TGCATCAGAAATATCAGGAA+TGG | + | chr8_2:35964821-35964840 | Msa1245780:CDS | 35.0% | |
| GCATCAGAAATATCAGGAAT+GGG | + | chr8_2:35964822-35964841 | Msa1245780:CDS | 35.0% | |
| AATCTGCGGTTAAATCTGAT+AGG | - | chr8_2:35964974-35964993 | None:intergenic | 35.0% | |
| ATTAATCTGGTTAACCAAGC+AGG | - | chr8_2:35965052-35965071 | None:intergenic | 35.0% | |
| TGCTTATTATATACTCCCTC+TGG | + | chr8_2:35965076-35965095 | Msa1245780:intron | 35.0% | |
| ! | TCCTTATATTTGAGACCAGA+GGG | - | chr8_2:35965094-35965113 | None:intergenic | 35.0% |
| ! | TTCCTTATATTTGAGACCAG+AGG | - | chr8_2:35965095-35965114 | None:intergenic | 35.0% |
| GGGTCTCAAATATAAGTAAC+TGG | - | chr8_2:35965185-35965204 | None:intergenic | 35.0% | |
| TACATAAGCACTTACTACTC+CGG | - | chr8_2:35965206-35965225 | None:intergenic | 35.0% | |
| ! | TGCATCATTCTTCTTTTCAG+AGG | - | chr8_2:35965331-35965350 | None:intergenic | 35.0% |
| TGTGTGTGTTTCTTTATCTG+TGG | + | chr8_2:35965393-35965412 | Msa1245780:intron | 35.0% | |
| TCTGAATCAGATGGCAAAAA+TGG | - | chr8_2:35965680-35965699 | None:intergenic | 35.0% | |
| TTACCTATATCCTGTTGATC+TGG | - | chr8_2:35965719-35965738 | None:intergenic | 35.0% | |
| CTTATGTTCATAAGCTCTCT+AGG | - | chr8_2:35965987-35966006 | None:intergenic | 35.0% | |
| ! | AGACTGTTTAAGAGAGCTTT+TGG | - | chr8_2:35966043-35966062 | None:intergenic | 35.0% |
| ! | TTGTATTAGGTTTGGGATGT+AGG | + | chr8_2:35966126-35966145 | Msa1245780:intron | 35.0% |
| AGGAGAAACCTTCAACTTAA+GGG | + | chr8_2:35966310-35966329 | Msa1245780:CDS | 35.0% | |
| ! | ATGTCATCATCTAGCTTACT+TGG | + | chr8_2:35966393-35966412 | Msa1245780:three_prime_UTR | 35.0% |
| ! | TGTAGTACTGGATATCCCAT+AGG | - | chr8_2:35963963-35963982 | None:intergenic | 40.0% |
| TTCCCAGAATTCATCCGAAT+GGG | - | chr8_2:35964084-35964103 | None:intergenic | 40.0% | |
| ATTCCCAGAATTCATCCGAA+TGG | - | chr8_2:35964085-35964104 | None:intergenic | 40.0% | |
| TGGTTATTGAAGCATGGTGA+TGG | + | chr8_2:35964683-35964702 | Msa1245780:intron | 40.0% | |
| GCTCCTATGATTCCACAAAA+CGG | + | chr8_2:35964726-35964745 | Msa1245780:CDS | 40.0% | |
| ! | GTACCGTTTTGTGGAATCAT+AGG | - | chr8_2:35964732-35964751 | None:intergenic | 40.0% |
| ! | GATGACATTGTACCGTTTTG+TGG | - | chr8_2:35964741-35964760 | None:intergenic | 40.0% |
| AACCGCAGATTTACCAAACT+TGG | + | chr8_2:35964983-35965002 | Msa1245780:CDS | 40.0% | |
| ACCGCAGATTTACCAAACTT+GGG | + | chr8_2:35964984-35965003 | Msa1245780:CDS | 40.0% | |
| TCCCAAGTTTGGTAAATCTG+CGG | - | chr8_2:35964988-35965007 | None:intergenic | 40.0% | |
| TCCCTCTGGTCTCAAATATA+AGG | + | chr8_2:35965090-35965109 | Msa1245780:intron | 40.0% | |
| ACATAAGCACTTACTACTCC+GGG | - | chr8_2:35965205-35965224 | None:intergenic | 40.0% | |
| AGCAACATGTCTGAATCAGA+TGG | - | chr8_2:35965689-35965708 | None:intergenic | 40.0% | |
| TCTCCAGATCAACAGGATAT+AGG | + | chr8_2:35965713-35965732 | Msa1245780:CDS | 40.0% | |
| AGTCTCGCAAGTATTTATGC+CGG | + | chr8_2:35966058-35966077 | Msa1245780:intron | 40.0% | |
| ATCCCAAACCTAATACAACC+TGG | - | chr8_2:35966124-35966143 | None:intergenic | 40.0% | |
| GAGGAGAAACCTTCAACTTA+AGG | + | chr8_2:35966309-35966328 | Msa1245780:CDS | 40.0% | |
| GGAGAAACCTTCAACTTAAG+GGG | + | chr8_2:35966311-35966330 | Msa1245780:exon | 40.0% | |
| CTATACTGTAACCGAAGTGT+AGG | + | chr8_2:35966424-35966443 | Msa1245780:three_prime_UTR | 40.0% | |
| ! | TTGAATTTTGCAGAGGGACA+AGG | - | chr8_2:35966641-35966660 | None:intergenic | 40.0% |
| ATAGGATGCTGCTGTAGTAC+TGG | - | chr8_2:35963975-35963994 | None:intergenic | 45.0% | |
| ATGACAACTTGACATGCCCA+TGG | - | chr8_2:35964027-35964046 | None:intergenic | 45.0% | |
| ACCCCATTCGGATGAATTCT+GGG | + | chr8_2:35964079-35964098 | Msa1245780:CDS | 45.0% | |
| TCCCAGAATTCATCCGAATG+GGG | - | chr8_2:35964083-35964102 | None:intergenic | 45.0% | |
| GGTTAATTGGTTGAATGCGG+AGG | + | chr8_2:35964614-35964633 | Msa1245780:intron | 45.0% | |
| GGAATCATAGGAGCCATATC+AGG | - | chr8_2:35964720-35964739 | None:intergenic | 45.0% | |
| ! | ACTCACTGGCATTTCTGAGA+CGG | - | chr8_2:35964763-35964782 | None:intergenic | 45.0% |
| TCTGATGTGGTAAGTTCGGT+AGG | + | chr8_2:35964879-35964898 | Msa1245780:CDS | 45.0% | |
| ! | GAATGGGATTTCTAGATCGC+TGG | + | chr8_2:35964926-35964945 | Msa1245780:CDS | 45.0% |
| GATCGCTGGATCAAATTCAG+TGG | + | chr8_2:35964940-35964959 | Msa1245780:CDS | 45.0% | |
| GCAGATTTACCAAACTTGGG+AGG | + | chr8_2:35964987-35965006 | Msa1245780:CDS | 45.0% | |
| ! | TTGAAGTCTTAGGGCTTGCT+TGG | - | chr8_2:35965569-35965588 | None:intergenic | 45.0% |
| GTGGTACTCTTTGCAGATCT+TGG | + | chr8_2:35965629-35965648 | Msa1245780:intron | 45.0% | |
| TTTGCAGATCTTGGAGCTCT+AGG | + | chr8_2:35965638-35965657 | Msa1245780:intron | 45.0% | |
| !! | TGGAGCTCTAGGAAACTATC+CGG | + | chr8_2:35965649-35965668 | Msa1245780:CDS | 45.0% |
| GCTTGAATCTCCAGATCAAC+AGG | + | chr8_2:35965706-35965725 | Msa1245780:CDS | 45.0% | |
| CGCCAGGTTGTATTAGGTTT+GGG | + | chr8_2:35966119-35966138 | Msa1245780:intron | 45.0% | |
| ! | TCATCTGATTGAGAGCATGG+AGG | - | chr8_2:35966291-35966310 | None:intergenic | 45.0% |
| TCCATGCTCTCAATCAGATG+AGG | + | chr8_2:35966290-35966309 | Msa1245780:CDS | 45.0% | |
| TCCTCATCTGATTGAGAGCA+TGG | - | chr8_2:35966294-35966313 | None:intergenic | 45.0% | |
| GAAACCTTCAACTTAAGGGG+AGG | + | chr8_2:35966314-35966333 | Msa1245780:exon | 45.0% | |
| !! | CTTTCCTCCCCTTAAGTTGA+AGG | - | chr8_2:35966321-35966340 | None:intergenic | 45.0% |
| ! | ATCTAGCTTACTTGGCATGC+AGG | + | chr8_2:35966401-35966420 | Msa1245780:three_prime_UTR | 45.0% |
| AGATAAGGCTGCCTACACTT+CGG | - | chr8_2:35966438-35966457 | None:intergenic | 45.0% | |
| !! | ATATATTATATAATAAGATA+AGG | - | chr8_2:35966453-35966472 | None:intergenic | 5.0% |
| TCAGCCTCATATGGACTCCA+TGG | + | chr8_2:35964007-35964026 | Msa1245780:five_prime_UTR | 50.0% | |
| CAGCCTCATATGGACTCCAT+GGG | + | chr8_2:35964008-35964027 | Msa1245780:five_prime_UTR | 50.0% | |
| ATGCCCATGGAGTCCATATG+AGG | - | chr8_2:35964014-35964033 | None:intergenic | 50.0% | |
| ! | GGGCATGTCAAGTTGTCATG+TGG | + | chr8_2:35964028-35964047 | Msa1245780:exon | 50.0% |
| CGAATGGGGTGGAAATTGCT+CGG | - | chr8_2:35964069-35964088 | None:intergenic | 50.0% | |
| CGAGCAATTTCCACCCCATT+CGG | + | chr8_2:35964067-35964086 | Msa1245780:CDS | 50.0% | |
| CAGAATTCATCCGAATGGGG+TGG | - | chr8_2:35964080-35964099 | None:intergenic | 50.0% | |
| CACCCCATTCGGATGAATTC+TGG | + | chr8_2:35964078-35964097 | Msa1245780:CDS | 50.0% | |
| CATGACGGCCACAATGATCA+AGG | - | chr8_2:35964309-35964328 | None:intergenic | 50.0% | |
| ATTGTGGCCGTCATGCACTT+AGG | + | chr8_2:35964314-35964333 | Msa1245780:intron | 50.0% | |
| ACCACTGATGTTGGACTCAC+TGG | - | chr8_2:35964777-35964796 | None:intergenic | 50.0% | |
| CCACTCGATACCACTGATGT+TGG | - | chr8_2:35964786-35964805 | None:intergenic | 50.0% | |
| ! | CCAACATCAGTGGTATCGAG+TGG | + | chr8_2:35964783-35964802 | Msa1245780:CDS | 50.0% |
| !! | CTTGCTTGGTGTCGACAGAT+TGG | - | chr8_2:35965555-35965574 | None:intergenic | 50.0% |
| !! | GGAGCTCTAGGAAACTATCC+GGG | + | chr8_2:35965650-35965669 | Msa1245780:CDS | 50.0% |
| GATGGCAAAAATGGCGAACC+CGG | - | chr8_2:35965671-35965690 | None:intergenic | 50.0% | |
| CCTAATACAACCTGGCGCAT+TGG | - | chr8_2:35966116-35966135 | None:intergenic | 50.0% | |
| CCAATGCGCCAGGTTGTATT+AGG | + | chr8_2:35966113-35966132 | Msa1245780:intron | 50.0% | |
| GCGCCAGGTTGTATTAGGTT+TGG | + | chr8_2:35966118-35966137 | Msa1245780:intron | 50.0% | |
| GAGAGGTGAAGACAGTGCTT+AGG | + | chr8_2:35966559-35966578 | Msa1245780:three_prime_UTR | 50.0% | |
| GTCCATATGAGGCTGACCTG+CGG | - | chr8_2:35964003-35964022 | None:intergenic | 55.0% | |
| GGACCACAGTGCTCCTGATA+TGG | + | chr8_2:35964704-35964723 | Msa1245780:CDS | 55.0% | |
| !! | GAGCCATATCAGGAGCACTG+TGG | - | chr8_2:35964710-35964729 | None:intergenic | 55.0% |
| GCCAGTGAGTCCAACATCAG+TGG | + | chr8_2:35964773-35964792 | Msa1245780:CDS | 55.0% | |
| GGTAGGATTGCAGCTTGCAC+CGG | + | chr8_2:35964896-35964915 | Msa1245780:CDS | 55.0% | |
| GAAATCCCATTCCCGCCATC+CGG | - | chr8_2:35964918-35964937 | None:intergenic | 55.0% | |
| TTGAAACAGGCCAATGCGCC+AGG | + | chr8_2:35966103-35966122 | Msa1245780:intron | 55.0% | |
| ATATGAGGCTGACCTGCGGC+TGG | - | chr8_2:35963999-35964018 | None:intergenic | 60.0% | |
| AGCCGCAGGTCAGCCTCATA+TGG | + | chr8_2:35963998-35964017 | Msa1245780:five_prime_UTR | 60.0% | |
| GGATTGCAGCTTGCACCGGA+TGG | + | chr8_2:35964900-35964919 | Msa1245780:CDS | 60.0% | |
| TTGCAGCTTGCACCGGATGG+CGG | + | chr8_2:35964903-35964922 | Msa1245780:CDS | 60.0% | |
| !! | TTGCACCGGATGGCGGGAAT+GGG | + | chr8_2:35964910-35964929 | Msa1245780:CDS | 60.0% |
| CAGCATCCTATGCCAGCCGC+AGG | + | chr8_2:35963984-35964003 | Msa1245780:five_prime_UTR | 65.0% | |
| TGCAGCTTGCACCGGATGGC+GGG | + | chr8_2:35964904-35964923 | Msa1245780:CDS | 65.0% | |
| !! | CTTGCACCGGATGGCGGGAA+TGG | + | chr8_2:35964909-35964928 | Msa1245780:CDS | 65.0% |
| GGCTGACCTGCGGCTGGCAT+AGG | - | chr8_2:35963993-35964012 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 35963946 | 35966693 | 35963946 | ID=Msa1245780;Name=Msa1245780 |
| chr8_2 | mRNA | 35963946 | 35966693 | 35963946 | ID=Msa1245780-mRNA-1;Parent=Msa1245780;Name=Msa1245780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=99|1|1|1|0.66|0.5|4|364|177 |
| chr8_2 | exon | 35963946 | 35964106 | 35963946 | ID=Msa1245780-mRNA-1:exon:11402;Parent=Msa1245780-mRNA-1 |
| chr8_2 | exon | 35964695 | 35965008 | 35964695 | ID=Msa1245780-mRNA-1:exon:11403;Parent=Msa1245780-mRNA-1 |
| chr8_2 | exon | 35965645 | 35965734 | 35965645 | ID=Msa1245780-mRNA-1:exon:11404;Parent=Msa1245780-mRNA-1 |
| chr8_2 | exon | 35966262 | 35966693 | 35966262 | ID=Msa1245780-mRNA-1:exon:11405;Parent=Msa1245780-mRNA-1 |
| chr8_2 | five_prime_UTR | 35963946 | 35964044 | 35963946 | ID=Msa1245780-mRNA-1:five_prime_utr;Parent=Msa1245780-mRNA-1 |
| chr8_2 | CDS | 35964045 | 35964106 | 35964045 | ID=Msa1245780-mRNA-1:cds;Parent=Msa1245780-mRNA-1 |
| chr8_2 | CDS | 35964695 | 35965008 | 35964695 | ID=Msa1245780-mRNA-1:cds;Parent=Msa1245780-mRNA-1 |
| chr8_2 | CDS | 35965645 | 35965734 | 35965645 | ID=Msa1245780-mRNA-1:cds;Parent=Msa1245780-mRNA-1 |
| chr8_2 | CDS | 35966262 | 35966329 | 35966262 | ID=Msa1245780-mRNA-1:cds;Parent=Msa1245780-mRNA-1 |
| chr8_2 | three_prime_UTR | 35966330 | 35966693 | 35966330 | ID=Msa1245780-mRNA-1:three_prime_utr;Parent=Msa1245780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
