Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246140 | ACU13438.1 | 95.161 | 186 | 3 | 1 | 1 | 180 | 1 | 186 | 7.57e-121 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246140 | sp|Q9SIP7|RS31_ARATH | 89.785 | 186 | 13 | 1 | 1 | 180 | 1 | 186 | 7.03e-117 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246140 | C6SW15 | 95.161 | 186 | 3 | 1 | 1 | 180 | 1 | 186 | 3.61e-121 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1246140 | Msa1335780 | 0.837190 | 6.017196e-57 | -8.615850e-47 |
| Msa1246140 | Msa1414750 | 0.842663 | 2.253008e-58 | -8.615850e-47 |
| Msa1246140 | Msa1463840 | 0.820259 | 7.540605e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246140 | MtrunA17_Chr1g0155631 | 95.161 | 186 | 3 | 1 | 1 | 180 | 1 | 186 | 3.01e-124 | 350 |
| Msa1246140 | MtrunA17_Chr1g0168341 | 95.161 | 186 | 3 | 1 | 1 | 180 | 1 | 186 | 3.01e-124 | 350 |
| Msa1246140 | MtrunA17_Chr6g0469891 | 92.857 | 182 | 7 | 1 | 5 | 180 | 1 | 182 | 1.74e-118 | 335 |
| Msa1246140 | MtrunA17_Chr6g0469871 | 92.857 | 182 | 7 | 1 | 5 | 180 | 1 | 182 | 1.74e-118 | 335 |
| Msa1246140 | MtrunA17_Chr1g0210251 | 83.333 | 186 | 25 | 1 | 1 | 180 | 1 | 186 | 1.92e-108 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246140 | AT2G31610.1 | 89.785 | 186 | 13 | 1 | 1 | 180 | 1 | 186 | 7.15e-118 | 334 |
| Msa1246140 | AT3G53870.1 | 89.785 | 186 | 13 | 1 | 1 | 180 | 1 | 186 | 3.73e-117 | 332 |
| Msa1246140 | AT5G35530.1 | 88.235 | 187 | 16 | 1 | 1 | 181 | 1 | 187 | 5.23e-117 | 332 |
Find 54 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTAAATCCATGAAATTTA+AGG | 0.198680 | 8_2:+36582504 | Msa1246140:CDS |
| GTGAGAAGGGTTGGAGGATC+AGG | 0.202484 | 8_2:+36582245 | Msa1246140:CDS |
| GTAGGGTGTTCTTGGTATTA+AGG | 0.234740 | 8_2:+36582692 | Msa1246140:intron |
| TTTATGTTGTAGGGTGTTCT+TGG | 0.278662 | 8_2:+36582684 | Msa1246140:intron |
| ATACCCGTCCTTAAATTTCA+TGG | 0.294785 | 8_2:-36582512 | None:intergenic |
| TCCCCTGTTGTTAACTTTCT+CGG | 0.302506 | 8_2:-36582329 | None:intergenic |
| CGGTGTCTTGAGGTTTGTTA+TGG | 0.302956 | 8_2:+36582426 | Msa1246140:CDS |
| TCTCTTCGTTACAAGCTTCT+TGG | 0.309178 | 8_2:+36582376 | Msa1246140:CDS |
| ATATTCCGGTGTTGAGGTTA+AGG | 0.365829 | 8_2:+36582085 | Msa1246140:CDS |
| AAACCTCAAGACACCGTTAC+AGG | 0.383970 | 8_2:-36582419 | None:intergenic |
| CTTGCAGAAGATGGATATTC+CGG | 0.391778 | 8_2:+36582071 | Msa1246140:CDS |
| ACCAGAGAGCTTGCAGAAGA+TGG | 0.401740 | 8_2:+36582062 | Msa1246140:CDS |
| GAGTCAATGTAATCCTTAAC+AGG | 0.402767 | 8_2:-36582553 | None:intergenic |
| TATGATTAGGTGAGAAGGGT+TGG | 0.420192 | 8_2:+36582236 | Msa1246140:intron |
| CCATGTTTGCAGATTTAGCT+AGG | 0.429489 | 8_2:-36581879 | None:intergenic |
| ATGCCGAGAAAGTTAACAAC+AGG | 0.438391 | 8_2:+36582326 | Msa1246140:CDS |
| TCCATCTTCTGCAAGCTCTC+TGG | 0.461189 | 8_2:-36582063 | None:intergenic |
| AATTTATGATTAGGTGAGAA+GGG | 0.461982 | 8_2:+36582232 | Msa1246140:intron |
| CTCGTCCGGACAACCTGTTA+AGG | 0.466411 | 8_2:+36582540 | Msa1246140:CDS |
| TAGACATGTTCTTCTTAGAC+AGG | 0.473972 | 8_2:+36582582 | Msa1246140:CDS |
| GATTAGGTGAGAAGGGTTGG+AGG | 0.479156 | 8_2:+36582239 | Msa1246140:intron |
| CATGTTTGCAGATTTAGCTA+GGG | 0.487102 | 8_2:-36581878 | None:intergenic |
| TGTTATGGAAAGTGGTGCTA+AGG | 0.493149 | 8_2:+36582441 | Msa1246140:CDS |
| TACAGTTCAACACTGTTCTC+AGG | 0.494394 | 8_2:-36582304 | None:intergenic |
| CTTCGTTACAAGCTTCTTGG+TGG | 0.500784 | 8_2:+36582379 | Msa1246140:CDS |
| GTAATCCTTAACAGGTTGTC+CGG | 0.503308 | 8_2:-36582545 | None:intergenic |
| TTGAGGTTTGTTATGGAAAG+TGG | 0.514516 | 8_2:+36582433 | Msa1246140:CDS |
| AATCCATGAAATTTAAGGAC+GGG | 0.519170 | 8_2:+36582509 | Msa1246140:CDS |
| GACGGGTATATGATCTCGTC+CGG | 0.524013 | 8_2:+36582526 | Msa1246140:CDS |
| TATTGTCAGTGGAAAATTGA+GGG | 0.525395 | 8_2:+36582474 | Msa1246140:CDS |
| TGAGAAGGGTTGGAGGATCA+GGG | 0.529759 | 8_2:+36582246 | Msa1246140:CDS |
| TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 8_2:+36582034 | Msa1246140:CDS |
| AATGGTAACAATATCAGGTA+GGG | 0.532486 | 8_2:-36582722 | None:intergenic |
| CCTAGCTAAATCTGCAAACA+TGG | 0.546465 | 8_2:+36581879 | Msa1246140:exon |
| GGCTGTGAGGTTATTGTCAG+TGG | 0.553460 | 8_2:+36582463 | Msa1246140:CDS |
| GTGTTGCAGTTCGTCGCTGA+CGG | 0.554870 | 8_2:+36582008 | Msa1246140:intron |
| GATGATGATTTCAGTGCGCA+TGG | 0.564175 | 8_2:-36582114 | None:intergenic |
| GAATTTATGATTAGGTGAGA+AGG | 0.566300 | 8_2:+36582231 | Msa1246140:intron |
| AGATGGATATTCCGGTGTTG+AGG | 0.576637 | 8_2:+36582079 | Msa1246140:CDS |
| GAATGGTAACAATATCAGGT+AGG | 0.585408 | 8_2:-36582723 | None:intergenic |
| TTATTGTCAGTGGAAAATTG+AGG | 0.586639 | 8_2:+36582473 | Msa1246140:CDS |
| GCTGTTCGCAGAGCCTGTAA+CGG | 0.602882 | 8_2:+36582406 | Msa1246140:CDS |
| GTTATGGAAAGTGGTGCTAA+GGG | 0.606130 | 8_2:+36582442 | Msa1246140:CDS |
| AAATCCATGAAATTTAAGGA+CGG | 0.616225 | 8_2:+36582508 | Msa1246140:CDS |
| GAGCCTGTAACGGTGTCTTG+AGG | 0.617911 | 8_2:+36582416 | Msa1246140:CDS |
| ATGTTTGCAGATTTAGCTAG+GGG | 0.620506 | 8_2:-36581877 | None:intergenic |
| ATGGTAACAATATCAGGTAG+GGG | 0.623679 | 8_2:-36582721 | None:intergenic |
| AAGAGACTCAGCTTGTGCAA+TGG | 0.623807 | 8_2:-36582359 | None:intergenic |
| ATGATGATTTCAGTGCGCAT+GGG | 0.669745 | 8_2:-36582113 | None:intergenic |
| AGTAACCTTAACCTCAACAC+CGG | 0.681090 | 8_2:-36582090 | None:intergenic |
| TGTTTGCAGATTTAGCTAGG+GGG | 0.682552 | 8_2:-36581876 | None:intergenic |
| TGCCGAGAAAGTTAACAACA+GGG | 0.702659 | 8_2:+36582327 | Msa1246140:CDS |
| GCCGAGAAAGTTAACAACAG+GGG | 0.711387 | 8_2:+36582328 | Msa1246140:CDS |
| AAGTGGTGCTAAGGGCTGTG+AGG | 0.739761 | 8_2:+36582450 | Msa1246140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAATCTGATTTAAA+TGG | + | chr8_2:36582193-36582212 | Msa1246140:intron | 10.0% |
| !!! | TATTTTTAATCTGATTTAAA+TGG | + | chr8_2:36582193-36582212 | Msa1246140:intron | 10.0% |
| !! | TGATTTATGAATTTATGATT+AGG | + | chr8_2:36582223-36582242 | Msa1246140:intron | 15.0% |
| !! | TGATTTATGAATTTATGATT+AGG | + | chr8_2:36582223-36582242 | Msa1246140:intron | 15.0% |
| !!! | TGATATGTTAATTTGATTTG+TGG | + | chr8_2:36581986-36582005 | Msa1246140:intron | 20.0% |
| !!! | ATTATGTCATTTATGTTGTA+GGG | + | chr8_2:36582675-36582694 | Msa1246140:intron | 20.0% |
| !!! | TGATATGTTAATTTGATTTG+TGG | + | chr8_2:36581986-36582005 | Msa1246140:intron | 20.0% |
| !!! | ATTATGTCATTTATGTTGTA+GGG | + | chr8_2:36582675-36582694 | Msa1246140:intron | 20.0% |
| ! | AATTAAGAAATCGCTACTAA+TGG | - | chr8_2:36581959-36581978 | None:intergenic | 25.0% |
| ! | AATTTATGATTAGGTGAGAA+GGG | + | chr8_2:36582232-36582251 | Msa1246140:intron | 25.0% |
| ! | AGCTAAATCCATGAAATTTA+AGG | + | chr8_2:36582504-36582523 | Msa1246140:CDS | 25.0% |
| ! | AAATCCATGAAATTTAAGGA+CGG | + | chr8_2:36582508-36582527 | Msa1246140:CDS | 25.0% |
| !! | GATTATGTCATTTATGTTGT+AGG | + | chr8_2:36582674-36582693 | Msa1246140:intron | 25.0% |
| ! | AATTAAGAAATCGCTACTAA+TGG | - | chr8_2:36581959-36581978 | None:intergenic | 25.0% |
| ! | AATTTATGATTAGGTGAGAA+GGG | + | chr8_2:36582232-36582251 | Msa1246140:intron | 25.0% |
| ! | AGCTAAATCCATGAAATTTA+AGG | + | chr8_2:36582504-36582523 | Msa1246140:CDS | 25.0% |
| ! | AAATCCATGAAATTTAAGGA+CGG | + | chr8_2:36582508-36582527 | Msa1246140:CDS | 25.0% |
| !! | GATTATGTCATTTATGTTGT+AGG | + | chr8_2:36582674-36582693 | Msa1246140:intron | 25.0% |
| GAATTTATGATTAGGTGAGA+AGG | + | chr8_2:36582231-36582250 | Msa1246140:intron | 30.0% | |
| ! | CAGGAAACTTAAATCTTTTC+TGG | - | chr8_2:36582288-36582307 | None:intergenic | 30.0% |
| TTATTGTCAGTGGAAAATTG+AGG | + | chr8_2:36582473-36582492 | Msa1246140:CDS | 30.0% | |
| TATTGTCAGTGGAAAATTGA+GGG | + | chr8_2:36582474-36582493 | Msa1246140:CDS | 30.0% | |
| AATCCATGAAATTTAAGGAC+GGG | + | chr8_2:36582509-36582528 | Msa1246140:CDS | 30.0% | |
| TTATGATCCAACAACCTTAT+TGG | + | chr8_2:36582610-36582629 | Msa1246140:intron | 30.0% | |
| ATATGAACGAACAACCAATA+AGG | - | chr8_2:36582627-36582646 | None:intergenic | 30.0% | |
| ! | TTATTGGTTGTTCGTTCATA+TGG | + | chr8_2:36582626-36582645 | Msa1246140:intron | 30.0% |
| ! | TTCGTTCATATGGTTTGTAA+TGG | + | chr8_2:36582636-36582655 | Msa1246140:intron | 30.0% |
| GAATTTATGATTAGGTGAGA+AGG | + | chr8_2:36582231-36582250 | Msa1246140:intron | 30.0% | |
| ! | CAGGAAACTTAAATCTTTTC+TGG | - | chr8_2:36582288-36582307 | None:intergenic | 30.0% |
| TTATTGTCAGTGGAAAATTG+AGG | + | chr8_2:36582473-36582492 | Msa1246140:CDS | 30.0% | |
| TATTGTCAGTGGAAAATTGA+GGG | + | chr8_2:36582474-36582493 | Msa1246140:CDS | 30.0% | |
| AATCCATGAAATTTAAGGAC+GGG | + | chr8_2:36582509-36582528 | Msa1246140:CDS | 30.0% | |
| TTATGATCCAACAACCTTAT+TGG | + | chr8_2:36582610-36582629 | Msa1246140:intron | 30.0% | |
| ATATGAACGAACAACCAATA+AGG | - | chr8_2:36582627-36582646 | None:intergenic | 30.0% | |
| ! | TTATTGGTTGTTCGTTCATA+TGG | + | chr8_2:36582626-36582645 | Msa1246140:intron | 30.0% |
| ! | TTCGTTCATATGGTTTGTAA+TGG | + | chr8_2:36582636-36582655 | Msa1246140:intron | 30.0% |
| ATGTTTGCAGATTTAGCTAG+GGG | - | chr8_2:36581880-36581899 | None:intergenic | 35.0% | |
| CATGTTTGCAGATTTAGCTA+GGG | - | chr8_2:36581881-36581900 | None:intergenic | 35.0% | |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | - | chr8_2:36581908-36581927 | None:intergenic | 35.0% |
| TTTCTTCGCTGAATTGAATG+AGG | + | chr8_2:36582034-36582053 | Msa1246140:CDS | 35.0% | |
| ! | AAATCTTTTCTGGACTACTG+AGG | - | chr8_2:36582278-36582297 | None:intergenic | 35.0% |
| !! | TTGAGGTTTGTTATGGAAAG+TGG | + | chr8_2:36582433-36582452 | Msa1246140:CDS | 35.0% |
| ATACCCGTCCTTAAATTTCA+TGG | - | chr8_2:36582515-36582534 | None:intergenic | 35.0% | |
| GAGTCAATGTAATCCTTAAC+AGG | - | chr8_2:36582556-36582575 | None:intergenic | 35.0% | |
| TAGACATGTTCTTCTTAGAC+AGG | + | chr8_2:36582582-36582601 | Msa1246140:CDS | 35.0% | |
| ! | TTTATGTTGTAGGGTGTTCT+TGG | + | chr8_2:36582684-36582703 | Msa1246140:intron | 35.0% |
| ATGTTTGCAGATTTAGCTAG+GGG | - | chr8_2:36581880-36581899 | None:intergenic | 35.0% | |
| CATGTTTGCAGATTTAGCTA+GGG | - | chr8_2:36581881-36581900 | None:intergenic | 35.0% | |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | - | chr8_2:36581908-36581927 | None:intergenic | 35.0% |
| TTTCTTCGCTGAATTGAATG+AGG | + | chr8_2:36582034-36582053 | Msa1246140:CDS | 35.0% | |
| ! | AAATCTTTTCTGGACTACTG+AGG | - | chr8_2:36582278-36582297 | None:intergenic | 35.0% |
| !! | TTGAGGTTTGTTATGGAAAG+TGG | + | chr8_2:36582433-36582452 | Msa1246140:CDS | 35.0% |
| ATACCCGTCCTTAAATTTCA+TGG | - | chr8_2:36582515-36582534 | None:intergenic | 35.0% | |
| GAGTCAATGTAATCCTTAAC+AGG | - | chr8_2:36582556-36582575 | None:intergenic | 35.0% | |
| TAGACATGTTCTTCTTAGAC+AGG | + | chr8_2:36582582-36582601 | Msa1246140:CDS | 35.0% | |
| ! | TTTATGTTGTAGGGTGTTCT+TGG | + | chr8_2:36582684-36582703 | Msa1246140:intron | 35.0% |
| TGTTTGCAGATTTAGCTAGG+GGG | - | chr8_2:36581879-36581898 | None:intergenic | 40.0% | |
| CCATGTTTGCAGATTTAGCT+AGG | - | chr8_2:36581882-36581901 | None:intergenic | 40.0% | |
| CCTAGCTAAATCTGCAAACA+TGG | + | chr8_2:36581879-36581898 | Msa1246140:exon | 40.0% | |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | - | chr8_2:36581909-36581928 | None:intergenic | 40.0% |
| CCAAATGAGCAAAAAGCGAA+AGG | + | chr8_2:36581906-36581925 | Msa1246140:CDS | 40.0% | |
| CTTGCAGAAGATGGATATTC+CGG | + | chr8_2:36582071-36582090 | Msa1246140:CDS | 40.0% | |
| ! | ATATTCCGGTGTTGAGGTTA+AGG | + | chr8_2:36582085-36582104 | Msa1246140:CDS | 40.0% |
| AGTAACCTTAACCTCAACAC+CGG | - | chr8_2:36582093-36582112 | None:intergenic | 40.0% | |
| ATGATGATTTCAGTGCGCAT+GGG | - | chr8_2:36582116-36582135 | None:intergenic | 40.0% | |
| TATGATTAGGTGAGAAGGGT+TGG | + | chr8_2:36582236-36582255 | Msa1246140:intron | 40.0% | |
| TACAGTTCAACACTGTTCTC+AGG | - | chr8_2:36582307-36582326 | None:intergenic | 40.0% | |
| ATGCCGAGAAAGTTAACAAC+AGG | + | chr8_2:36582326-36582345 | Msa1246140:CDS | 40.0% | |
| TGCCGAGAAAGTTAACAACA+GGG | + | chr8_2:36582327-36582346 | Msa1246140:CDS | 40.0% | |
| TCCCCTGTTGTTAACTTTCT+CGG | - | chr8_2:36582332-36582351 | None:intergenic | 40.0% | |
| TCTCTTCGTTACAAGCTTCT+TGG | + | chr8_2:36582376-36582395 | Msa1246140:CDS | 40.0% | |
| ! | TGTTATGGAAAGTGGTGCTA+AGG | + | chr8_2:36582441-36582460 | Msa1246140:CDS | 40.0% |
| ! | GTTATGGAAAGTGGTGCTAA+GGG | + | chr8_2:36582442-36582461 | Msa1246140:CDS | 40.0% |
| GTAATCCTTAACAGGTTGTC+CGG | - | chr8_2:36582548-36582567 | None:intergenic | 40.0% | |
| CGAACAACCAATAAGGTTGT+TGG | - | chr8_2:36582620-36582639 | None:intergenic | 40.0% | |
| ! | GTAGGGTGTTCTTGGTATTA+AGG | + | chr8_2:36582692-36582711 | Msa1246140:intron | 40.0% |
| TGTTTGCAGATTTAGCTAGG+GGG | - | chr8_2:36581879-36581898 | None:intergenic | 40.0% | |
| CCATGTTTGCAGATTTAGCT+AGG | - | chr8_2:36581882-36581901 | None:intergenic | 40.0% | |
| CCTAGCTAAATCTGCAAACA+TGG | + | chr8_2:36581879-36581898 | Msa1246140:exon | 40.0% | |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | - | chr8_2:36581909-36581928 | None:intergenic | 40.0% |
| CCAAATGAGCAAAAAGCGAA+AGG | + | chr8_2:36581906-36581925 | Msa1246140:CDS | 40.0% | |
| CTTGCAGAAGATGGATATTC+CGG | + | chr8_2:36582071-36582090 | Msa1246140:CDS | 40.0% | |
| ! | ATATTCCGGTGTTGAGGTTA+AGG | + | chr8_2:36582085-36582104 | Msa1246140:CDS | 40.0% |
| AGTAACCTTAACCTCAACAC+CGG | - | chr8_2:36582093-36582112 | None:intergenic | 40.0% | |
| ATGATGATTTCAGTGCGCAT+GGG | - | chr8_2:36582116-36582135 | None:intergenic | 40.0% | |
| TATGATTAGGTGAGAAGGGT+TGG | + | chr8_2:36582236-36582255 | Msa1246140:intron | 40.0% | |
| TACAGTTCAACACTGTTCTC+AGG | - | chr8_2:36582307-36582326 | None:intergenic | 40.0% | |
| ATGCCGAGAAAGTTAACAAC+AGG | + | chr8_2:36582326-36582345 | Msa1246140:CDS | 40.0% | |
| TGCCGAGAAAGTTAACAACA+GGG | + | chr8_2:36582327-36582346 | Msa1246140:CDS | 40.0% | |
| TCCCCTGTTGTTAACTTTCT+CGG | - | chr8_2:36582332-36582351 | None:intergenic | 40.0% | |
| TCTCTTCGTTACAAGCTTCT+TGG | + | chr8_2:36582376-36582395 | Msa1246140:CDS | 40.0% | |
| ! | TGTTATGGAAAGTGGTGCTA+AGG | + | chr8_2:36582441-36582460 | Msa1246140:CDS | 40.0% |
| ! | GTTATGGAAAGTGGTGCTAA+GGG | + | chr8_2:36582442-36582461 | Msa1246140:CDS | 40.0% |
| GTAATCCTTAACAGGTTGTC+CGG | - | chr8_2:36582548-36582567 | None:intergenic | 40.0% | |
| CGAACAACCAATAAGGTTGT+TGG | - | chr8_2:36582620-36582639 | None:intergenic | 40.0% | |
| ! | GTAGGGTGTTCTTGGTATTA+AGG | + | chr8_2:36582692-36582711 | Msa1246140:intron | 40.0% |
| ! | AGATGGATATTCCGGTGTTG+AGG | + | chr8_2:36582079-36582098 | Msa1246140:CDS | 45.0% |
| GATGATGATTTCAGTGCGCA+TGG | - | chr8_2:36582117-36582136 | None:intergenic | 45.0% | |
| CACTAACCGAGAACAGCTTT+GGG | - | chr8_2:36582153-36582172 | None:intergenic | 45.0% | |
| GCCGAGAAAGTTAACAACAG+GGG | + | chr8_2:36582328-36582347 | Msa1246140:CDS | 45.0% | |
| AAGAGACTCAGCTTGTGCAA+TGG | - | chr8_2:36582362-36582381 | None:intergenic | 45.0% | |
| CTTCGTTACAAGCTTCTTGG+TGG | + | chr8_2:36582379-36582398 | Msa1246140:CDS | 45.0% | |
| AAACCTCAAGACACCGTTAC+AGG | - | chr8_2:36582422-36582441 | None:intergenic | 45.0% | |
| !! | CGGTGTCTTGAGGTTTGTTA+TGG | + | chr8_2:36582426-36582445 | Msa1246140:CDS | 45.0% |
| ! | AGATGGATATTCCGGTGTTG+AGG | + | chr8_2:36582079-36582098 | Msa1246140:CDS | 45.0% |
| GATGATGATTTCAGTGCGCA+TGG | - | chr8_2:36582117-36582136 | None:intergenic | 45.0% | |
| CACTAACCGAGAACAGCTTT+GGG | - | chr8_2:36582153-36582172 | None:intergenic | 45.0% | |
| GCCGAGAAAGTTAACAACAG+GGG | + | chr8_2:36582328-36582347 | Msa1246140:CDS | 45.0% | |
| AAGAGACTCAGCTTGTGCAA+TGG | - | chr8_2:36582362-36582381 | None:intergenic | 45.0% | |
| CTTCGTTACAAGCTTCTTGG+TGG | + | chr8_2:36582379-36582398 | Msa1246140:CDS | 45.0% | |
| AAACCTCAAGACACCGTTAC+AGG | - | chr8_2:36582422-36582441 | None:intergenic | 45.0% | |
| !! | CGGTGTCTTGAGGTTTGTTA+TGG | + | chr8_2:36582426-36582445 | Msa1246140:CDS | 45.0% |
| TTGCAGATTTAGCTAGGGGG+TGG | - | chr8_2:36581876-36581895 | None:intergenic | 50.0% | |
| ACCAGAGAGCTTGCAGAAGA+TGG | + | chr8_2:36582062-36582081 | Msa1246140:CDS | 50.0% | |
| TCCATCTTCTGCAAGCTCTC+TGG | - | chr8_2:36582066-36582085 | None:intergenic | 50.0% | |
| CTCGTACCCAAAGCTGTTCT+CGG | + | chr8_2:36582144-36582163 | Msa1246140:intron | 50.0% | |
| CCACTAACCGAGAACAGCTT+TGG | - | chr8_2:36582154-36582173 | None:intergenic | 50.0% | |
| CCAAAGCTGTTCTCGGTTAG+TGG | + | chr8_2:36582151-36582170 | Msa1246140:intron | 50.0% | |
| GATTAGGTGAGAAGGGTTGG+AGG | + | chr8_2:36582239-36582258 | Msa1246140:intron | 50.0% | |
| TGAGAAGGGTTGGAGGATCA+GGG | + | chr8_2:36582246-36582265 | Msa1246140:CDS | 50.0% | |
| GGCTGTGAGGTTATTGTCAG+TGG | + | chr8_2:36582463-36582482 | Msa1246140:CDS | 50.0% | |
| GACGGGTATATGATCTCGTC+CGG | + | chr8_2:36582526-36582545 | Msa1246140:CDS | 50.0% | |
| TTGCAGATTTAGCTAGGGGG+TGG | - | chr8_2:36581876-36581895 | None:intergenic | 50.0% | |
| ACCAGAGAGCTTGCAGAAGA+TGG | + | chr8_2:36582062-36582081 | Msa1246140:CDS | 50.0% | |
| TCCATCTTCTGCAAGCTCTC+TGG | - | chr8_2:36582066-36582085 | None:intergenic | 50.0% | |
| CTCGTACCCAAAGCTGTTCT+CGG | + | chr8_2:36582144-36582163 | Msa1246140:intron | 50.0% | |
| CCACTAACCGAGAACAGCTT+TGG | - | chr8_2:36582154-36582173 | None:intergenic | 50.0% | |
| CCAAAGCTGTTCTCGGTTAG+TGG | + | chr8_2:36582151-36582170 | Msa1246140:intron | 50.0% | |
| GATTAGGTGAGAAGGGTTGG+AGG | + | chr8_2:36582239-36582258 | Msa1246140:intron | 50.0% | |
| TGAGAAGGGTTGGAGGATCA+GGG | + | chr8_2:36582246-36582265 | Msa1246140:CDS | 50.0% | |
| GGCTGTGAGGTTATTGTCAG+TGG | + | chr8_2:36582463-36582482 | Msa1246140:CDS | 50.0% | |
| GACGGGTATATGATCTCGTC+CGG | + | chr8_2:36582526-36582545 | Msa1246140:CDS | 50.0% | |
| GTGTTGCAGTTCGTCGCTGA+CGG | + | chr8_2:36582008-36582027 | Msa1246140:intron | 55.0% | |
| GTGAGAAGGGTTGGAGGATC+AGG | + | chr8_2:36582245-36582264 | Msa1246140:CDS | 55.0% | |
| GCTGTTCGCAGAGCCTGTAA+CGG | + | chr8_2:36582406-36582425 | Msa1246140:CDS | 55.0% | |
| GAGCCTGTAACGGTGTCTTG+AGG | + | chr8_2:36582416-36582435 | Msa1246140:CDS | 55.0% | |
| ! | AAGTGGTGCTAAGGGCTGTG+AGG | + | chr8_2:36582450-36582469 | Msa1246140:CDS | 55.0% |
| CTCGTCCGGACAACCTGTTA+AGG | + | chr8_2:36582540-36582559 | Msa1246140:CDS | 55.0% | |
| GTGTTGCAGTTCGTCGCTGA+CGG | + | chr8_2:36582008-36582027 | Msa1246140:intron | 55.0% | |
| GTGAGAAGGGTTGGAGGATC+AGG | + | chr8_2:36582245-36582264 | Msa1246140:CDS | 55.0% | |
| GCTGTTCGCAGAGCCTGTAA+CGG | + | chr8_2:36582406-36582425 | Msa1246140:CDS | 55.0% | |
| GAGCCTGTAACGGTGTCTTG+AGG | + | chr8_2:36582416-36582435 | Msa1246140:CDS | 55.0% | |
| ! | AAGTGGTGCTAAGGGCTGTG+AGG | + | chr8_2:36582450-36582469 | Msa1246140:CDS | 55.0% |
| CTCGTCCGGACAACCTGTTA+AGG | + | chr8_2:36582540-36582559 | Msa1246140:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 36581846 | 36582731 | 36581846 | ID=Msa1246140;Name=Msa1246140 |
| chr8_2 | mRNA | 36581846 | 36582731 | 36581846 | ID=Msa1246140-mRNA-1;Parent=Msa1246140;Name=Msa1246140-mRNA-1;_AED=0.12;_eAED=0.13;_QI=52|0.33|0.25|1|1|1|4|0|184 |
| chr8_2 | exon | 36581846 | 36581927 | 36581846 | ID=Msa1246140-mRNA-1:exon:11678;Parent=Msa1246140-mRNA-1 |
| chr8_2 | exon | 36582017 | 36582146 | 36582017 | ID=Msa1246140-mRNA-1:exon:11679;Parent=Msa1246140-mRNA-1 |
| chr8_2 | exon | 36582245 | 36582603 | 36582245 | ID=Msa1246140-mRNA-1:exon:11680;Parent=Msa1246140-mRNA-1 |
| chr8_2 | exon | 36582696 | 36582731 | 36582696 | ID=Msa1246140-mRNA-1:exon:11681;Parent=Msa1246140-mRNA-1 |
| chr8_2 | five_prime_UTR | 36581846 | 36581897 | 36581846 | ID=Msa1246140-mRNA-1:five_prime_utr;Parent=Msa1246140-mRNA-1 |
| chr8_2 | CDS | 36581898 | 36581927 | 36581898 | ID=Msa1246140-mRNA-1:cds;Parent=Msa1246140-mRNA-1 |
| chr8_2 | CDS | 36582017 | 36582146 | 36582017 | ID=Msa1246140-mRNA-1:cds;Parent=Msa1246140-mRNA-1 |
| chr8_2 | CDS | 36582245 | 36582603 | 36582245 | ID=Msa1246140-mRNA-1:cds;Parent=Msa1246140-mRNA-1 |
| chr8_2 | CDS | 36582696 | 36582731 | 36582696 | ID=Msa1246140-mRNA-1:cds;Parent=Msa1246140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
