Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250190 | XP_003608539.1 | 92.899 | 169 | 11 | 1 | 1 | 169 | 1 | 168 | 3.06e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250190 | G7JF67 | 92.899 | 169 | 11 | 1 | 1 | 169 | 1 | 168 | 1.46e-111 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1205180 | Msa1250190 | 0.903639 | 2.818647e-79 | -8.615850e-47 |
| Msa1205990 | Msa1250190 | 0.874076 | 8.955318e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250190 | MtrunA17_Chr4g0054191 | 92.899 | 169 | 11 | 1 | 1 | 169 | 1 | 168 | 2.82e-115 | 323 |
| Msa1250190 | MtrunA17_Chr4g0059361 | 36.702 | 188 | 99 | 3 | 1 | 169 | 1 | 187 | 4.96e-33 | 115 |
| Msa1250190 | MtrunA17_Chr3g0117971 | 34.359 | 195 | 90 | 6 | 1 | 169 | 1 | 183 | 3.03e-30 | 108 |
| Msa1250190 | MtrunA17_Chr5g0414281 | 38.764 | 178 | 88 | 5 | 1 | 166 | 1 | 169 | 2.61e-29 | 105 |
| Msa1250190 | MtrunA17_Chr8g0364591 | 37.500 | 176 | 98 | 4 | 1 | 168 | 1 | 172 | 2.50e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250190 | AT5G67620.1 | 54.545 | 187 | 61 | 4 | 1 | 169 | 1 | 181 | 4.89e-60 | 184 |
| Msa1250190 | AT5G62900.1 | 40.000 | 170 | 86 | 4 | 1 | 166 | 1 | 158 | 2.02e-30 | 108 |
| Msa1250190 | AT5G50090.1 | 40.230 | 174 | 83 | 5 | 1 | 169 | 1 | 158 | 4.54e-29 | 105 |
| Msa1250190 | AT5G50090.2 | 39.080 | 174 | 79 | 5 | 1 | 169 | 1 | 152 | 8.86e-28 | 101 |
| Msa1250190 | AT5G50090.3 | 50.000 | 112 | 48 | 3 | 1 | 107 | 1 | 109 | 1.03e-24 | 93.6 |
| Msa1250190 | AT1G60010.1 | 32.609 | 184 | 92 | 4 | 1 | 166 | 1 | 170 | 2.67e-24 | 93.6 |
| Msa1250190 | AT1G10530.1 | 34.444 | 180 | 87 | 5 | 1 | 166 | 1 | 163 | 3.98e-23 | 90.1 |
Find 88 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGTACTCTGTTTATTTA+TGG | 0.088386 | 8_2:-45472584 | None:intergenic |
| CCTGATGACACTTTGCTTAT+TGG | 0.123509 | 8_2:+45473080 | Msa1250190:CDS |
| CAGAGTTATTATTAGGATTA+AGG | 0.148932 | 8_2:-45472727 | None:intergenic |
| TTACAAAGCATTGCAGAATT+TGG | 0.165154 | 8_2:+45475130 | Msa1250190:CDS |
| AACAAAGAATTGTTAGAAAA+TGG | 0.170409 | 8_2:+45472863 | Msa1250190:exon |
| CGTAGTACAGAGTTATTATT+AGG | 0.216664 | 8_2:-45472734 | None:intergenic |
| AATTAAGGAAGATTTATTTA+TGG | 0.225415 | 8_2:-45475184 | None:intergenic |
| GGCAATTACATGAATTATAT+TGG | 0.238496 | 8_2:-45475216 | None:intergenic |
| CGAAACTTAATTACCTTAAC+TGG | 0.239716 | 8_2:-45473494 | None:intergenic |
| GCAAGATTGAGAGGATTTAT+TGG | 0.272858 | 8_2:+45472937 | Msa1250190:CDS |
| TATTGGAAGGAACATAATTA+AGG | 0.287678 | 8_2:-45475199 | None:intergenic |
| ATTAAGGAAGATTTATTTAT+GGG | 0.290530 | 8_2:-45475183 | None:intergenic |
| TTCCTTATGTCTGCCTGGTT+TGG | 0.310678 | 8_2:+45475375 | Msa1250190:three_prime_UTR |
| AGATGATTTATTTGCAATAG+TGG | 0.330154 | 8_2:-45472385 | None:intergenic |
| CCAGGCAGACATAAGGAAAA+TGG | 0.333487 | 8_2:-45475370 | None:intergenic |
| AACAAAATAGCATGATATAA+TGG | 0.364383 | 8_2:-45475326 | None:intergenic |
| ACAAAGAATTGTTAGAAAAT+GGG | 0.367585 | 8_2:+45472864 | Msa1250190:exon |
| AAATTCTGCAATGCTTTGTA+AGG | 0.387024 | 8_2:-45475128 | None:intergenic |
| TGACACTTTGCTTATTGGTC+AGG | 0.391638 | 8_2:+45473085 | Msa1250190:CDS |
| ACGCACGCCACAAATCAATA+TGG | 0.398343 | 8_2:-45472499 | None:intergenic |
| GAATTGTCAAGCTGCAGAAT+TGG | 0.405080 | 8_2:+45472887 | Msa1250190:CDS |
| ATTGTTGTTGAGTTATGAAA+TGG | 0.411351 | 8_2:-45472784 | None:intergenic |
| GTCACATCCATATTGATTTG+TGG | 0.417103 | 8_2:+45472492 | Msa1250190:five_prime_UTR |
| GGGAAATTGTTGAAGGAAAC+TGG | 0.431181 | 8_2:+45473416 | Msa1250190:CDS |
| TCGAAGAAATGTGGTAAACT+TGG | 0.433100 | 8_2:+45473395 | Msa1250190:CDS |
| ACCTTAACTGGACTAGGATT+CGG | 0.447919 | 8_2:-45473482 | None:intergenic |
| AATAGTGGAAAATGTGATAT+TGG | 0.449655 | 8_2:-45472370 | None:intergenic |
| GTGGGTTGTAGATGTATTGA+AGG | 0.454729 | 8_2:+45473364 | Msa1250190:intron |
| CATTTACGCTTCAGTAGTGT+TGG | 0.454823 | 8_2:+45472470 | Msa1250190:five_prime_UTR |
| TGGACTAGGATTCGGAGCTC+TGG | 0.457328 | 8_2:-45473474 | None:intergenic |
| TCCGAATCCTAGTCCAGTTA+AGG | 0.460882 | 8_2:+45473481 | Msa1250190:CDS |
| TGTGTTGTGTCAGGTGGAAC+AGG | 0.461365 | 8_2:+45475015 | Msa1250190:intron |
| TCTGCAATGCTTTGTAAGGC+TGG | 0.461811 | 8_2:-45475124 | None:intergenic |
| TTTGTAAGGCTGGCCTCCAT+TGG | 0.463118 | 8_2:-45475114 | None:intergenic |
| AATACTATTATTAATGAGAA+TGG | 0.468716 | 8_2:-45472444 | None:intergenic |
| TAACAGTTGGGTAATTACTA+AGG | 0.472552 | 8_2:-45475301 | None:intergenic |
| TGCACTACTACAAATTAAGA+AGG | 0.472876 | 8_2:-45475241 | None:intergenic |
| GATATAATGGATTAACAGTT+GGG | 0.473192 | 8_2:-45475313 | None:intergenic |
| TGTAGTAGTGCATTATACAT+AGG | 0.474686 | 8_2:+45475252 | Msa1250190:three_prime_UTR |
| TAAACTTGGGAAATTGTTGA+AGG | 0.479398 | 8_2:+45473409 | Msa1250190:CDS |
| AAGGAAACTGGTGGTAGTCA+TGG | 0.487783 | 8_2:+45473428 | Msa1250190:CDS |
| AGAAGCAATAACAGAAGTGT+TGG | 0.498291 | 8_2:+45475067 | Msa1250190:CDS |
| TGATATAATGGATTAACAGT+TGG | 0.498377 | 8_2:-45475314 | None:intergenic |
| TTCCAAACCAGGCAGACATA+AGG | 0.505916 | 8_2:-45475377 | None:intergenic |
| CCAATAAGCAAAGTGTCATC+AGG | 0.507918 | 8_2:-45473080 | None:intergenic |
| AAGATTTATTTATGGGAGTG+AGG | 0.508515 | 8_2:-45475176 | None:intergenic |
| GCACTACTACAAATTAAGAA+GGG | 0.510827 | 8_2:-45475240 | None:intergenic |
| ATCCTCTCAATCTTGCTCCC+TGG | 0.517252 | 8_2:-45472930 | None:intergenic |
| AGATTTATTTATGGGAGTGA+GGG | 0.523438 | 8_2:-45475175 | None:intergenic |
| CAAAGAATTGTTAGAAAATG+GGG | 0.524195 | 8_2:+45472865 | Msa1250190:exon |
| AGAGAAAAGTATGGGATGAA+AGG | 0.526164 | 8_2:-45472332 | None:intergenic |
| TTGGTCTGTTAGTGCTCATG+AGG | 0.527619 | 8_2:+45472956 | Msa1250190:CDS |
| CGAAGAAATGTGGTAAACTT+GGG | 0.529302 | 8_2:+45473396 | Msa1250190:CDS |
| GGGGTGAACAGAGAAAAGTA+TGG | 0.533177 | 8_2:-45472341 | None:intergenic |
| CCATTCTCAGATTTAAGAGT+AGG | 0.536503 | 8_2:-45473026 | None:intergenic |
| TTGTTGGTGGTAGTGGCCAA+TGG | 0.537451 | 8_2:+45475098 | Msa1250190:CDS |
| GAGGTTATGAATTCAAATCC+TGG | 0.537803 | 8_2:+45472975 | Msa1250190:CDS |
| CCTACTCTTAAATCTGAGAA+TGG | 0.540696 | 8_2:+45473026 | Msa1250190:CDS |
| AGAAGCTTGAGATGTTTCAA+TGG | 0.541690 | 8_2:-45473053 | None:intergenic |
| ATGATGATGAATGATGATGA+TGG | 0.545211 | 8_2:-45472633 | None:intergenic |
| TTAATTACCTTAACTGGACT+AGG | 0.548847 | 8_2:-45473488 | None:intergenic |
| TGATGATATGAATTGTTATG+TGG | 0.550340 | 8_2:-45472414 | None:intergenic |
| ATTACATGAATTATATTGGA+AGG | 0.554922 | 8_2:-45475212 | None:intergenic |
| ACAGTTGTGATACATCATCC+AGG | 0.558304 | 8_2:+45472912 | Msa1250190:CDS |
| ATTATTAATGAGAATGGTGA+AGG | 0.566202 | 8_2:-45472438 | None:intergenic |
| AGGAAACTGGTGGTAGTCAT+GGG | 0.570159 | 8_2:+45473429 | Msa1250190:CDS |
| AAAATGTGATATTGGAGTGA+GGG | 0.571180 | 8_2:-45472362 | None:intergenic |
| AACATGACGTGACGGTAGCT+AGG | 0.578567 | 8_2:-45472547 | None:intergenic |
| GATGATATGAATTGTTATGT+GGG | 0.582534 | 8_2:-45472413 | None:intergenic |
| GGGTGAACAGAGAAAAGTAT+GGG | 0.598352 | 8_2:-45472340 | None:intergenic |
| GAAAATGTGATATTGGAGTG+AGG | 0.606057 | 8_2:-45472363 | None:intergenic |
| ATCCAGGGAGCAAGATTGAG+AGG | 0.609389 | 8_2:+45472928 | Msa1250190:CDS |
| CACTACTACAAATTAAGAAG+GGG | 0.614071 | 8_2:-45475239 | None:intergenic |
| GAGTTTGCTTCGAAGAAATG+TGG | 0.621219 | 8_2:+45473386 | Msa1250190:CDS |
| GAAGTGAAGTGAAGTGAAGT+GGG | 0.623956 | 8_2:-45472837 | None:intergenic |
| AAATGTGATATTGGAGTGAG+GGG | 0.631804 | 8_2:-45472361 | None:intergenic |
| ACTCAACGAACGGAGAGCAA+TGG | 0.634599 | 8_2:+45475040 | Msa1250190:CDS |
| AATAAATGAACATGACGTGA+CGG | 0.642233 | 8_2:-45472555 | None:intergenic |
| TGAAGTGAAGTGAAGTGAAG+TGG | 0.643546 | 8_2:-45472838 | None:intergenic |
| AAGGCACACATTTCCAAACC+AGG | 0.644598 | 8_2:-45475388 | None:intergenic |
| TTGGTGGTAGTGGCCAATGG+AGG | 0.645219 | 8_2:+45475101 | Msa1250190:CDS |
| GGAACAGGCGACTCAACGAA+CGG | 0.652981 | 8_2:+45475030 | Msa1250190:CDS |
| ACAAGAGCAACATAGTGACC+AGG | 0.657647 | 8_2:-45472993 | None:intergenic |
| CAGTTGTGATACATCATCCA+GGG | 0.658613 | 8_2:+45472913 | Msa1250190:CDS |
| ACTACTACAAATTAAGAAGG+GGG | 0.677016 | 8_2:-45475238 | None:intergenic |
| CTACTACAAATTAAGAAGGG+GGG | 0.690219 | 8_2:-45475237 | None:intergenic |
| AATGTGATATTGGAGTGAGG+GGG | 0.744336 | 8_2:-45472360 | None:intergenic |
| AAATTGTTGAAGGAAACTGG+TGG | 0.844470 | 8_2:+45473419 | Msa1250190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTATGTTATATTATTATT+TGG | - | chr8_2:45473138-45473157 | None:intergenic | 10.0% |
| !!! | ATAAAAAAAAGTGTTAAAAT+AGG | - | chr8_2:45474597-45474616 | None:intergenic | 10.0% |
| !!! | TTTATTGATTAAAATTTACA+TGG | + | chr8_2:45474612-45474631 | Msa1250190:intron | 10.0% |
| !!! | TTATTGATTAAAATTTACAT+GGG | + | chr8_2:45474613-45474632 | Msa1250190:intron | 10.0% |
| !! | AATTAGAGTTATATTATATT+GGG | - | chr8_2:45474749-45474768 | None:intergenic | 10.0% |
| !! | TAATTAGAGTTATATTATAT+TGG | - | chr8_2:45474750-45474769 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr8_2:45474817-45474836 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr8_2:45474818-45474837 | None:intergenic | 10.0% |
| !! | AATACTATTATTAATGAGAA+TGG | - | chr8_2:45472447-45472466 | None:intergenic | 15.0% |
| !!! | TTACTTTTAACAAATTTTAG+AGG | + | chr8_2:45473684-45473703 | Msa1250190:intron | 15.0% |
| !!! | AATTCAATTTTTAATTAGGA+CGG | + | chr8_2:45473734-45473753 | Msa1250190:intron | 15.0% |
| !! | TGATTGAAAAATAATAATTC+AGG | - | chr8_2:45473999-45474018 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr8_2:45474816-45474835 | None:intergenic | 15.0% |
| !! | CAAAAATAAAAGATGAATAA+AGG | - | chr8_2:45474997-45475016 | None:intergenic | 15.0% |
| !! | ATTAAGGAAGATTTATTTAT+GGG | - | chr8_2:45475186-45475205 | None:intergenic | 15.0% |
| !! | AATTAAGGAAGATTTATTTA+TGG | - | chr8_2:45475187-45475206 | None:intergenic | 15.0% |
| !! | AACAAAGAATTGTTAGAAAA+TGG | + | chr8_2:45472863-45472882 | Msa1250190:exon | 20.0% |
| !! | ACAAAGAATTGTTAGAAAAT+GGG | + | chr8_2:45472864-45472883 | Msa1250190:exon | 20.0% |
| !! | TATTGTTAAATAAGACTAGA+AGG | - | chr8_2:45473163-45473182 | None:intergenic | 20.0% |
| !! | TCAACAAAAGTTAATATATG+CGG | - | chr8_2:45473230-45473249 | None:intergenic | 20.0% |
| !! | AAATTTGCCAAAAAAAATTG+TGG | + | chr8_2:45473329-45473348 | Msa1250190:intron | 20.0% |
| !! | AGTAAAACACACAAAATTAA+AGG | - | chr8_2:45473669-45473688 | None:intergenic | 20.0% |
| !!! | TTTGTTTAGATTTTACGATT+TGG | - | chr8_2:45474367-45474386 | None:intergenic | 20.0% |
| !!! | TGAAATGACTCAATTATTTT+GGG | - | chr8_2:45474702-45474721 | None:intergenic | 20.0% |
| !!! | TTGAAATGACTCAATTATTT+TGG | - | chr8_2:45474703-45474722 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | - | chr8_2:45474793-45474812 | None:intergenic | 20.0% |
| !! | TCTAATACAATTGTCATAAA+TGG | - | chr8_2:45474911-45474930 | None:intergenic | 20.0% |
| !! | TTAGAAATCATAGTATGATT+TGG | + | chr8_2:45474926-45474945 | Msa1250190:intron | 20.0% |
| !! | ATTACATGAATTATATTGGA+AGG | - | chr8_2:45475215-45475234 | None:intergenic | 20.0% |
| !! | AACAAAATAGCATGATATAA+TGG | - | chr8_2:45475329-45475348 | None:intergenic | 20.0% |
| !! | AATAGTGGAAAATGTGATAT+TGG | - | chr8_2:45472373-45472392 | None:intergenic | 25.0% |
| ! | AGATGATTTATTTGCAATAG+TGG | - | chr8_2:45472388-45472407 | None:intergenic | 25.0% |
| ! | GATGATATGAATTGTTATGT+GGG | - | chr8_2:45472416-45472435 | None:intergenic | 25.0% |
| ! | TGATGATATGAATTGTTATG+TGG | - | chr8_2:45472417-45472436 | None:intergenic | 25.0% |
| ! | ATTATTAATGAGAATGGTGA+AGG | - | chr8_2:45472441-45472460 | None:intergenic | 25.0% |
| ! | ATAAGGGAAAAAAATTGATG+AGG | - | chr8_2:45472659-45472678 | None:intergenic | 25.0% |
| ! | TGTGATAAAAACGTGTATAA+GGG | - | chr8_2:45472675-45472694 | None:intergenic | 25.0% |
| ! | ATGTGATAAAAACGTGTATA+AGG | - | chr8_2:45472676-45472695 | None:intergenic | 25.0% |
| ! | CAGAGTTATTATTAGGATTA+AGG | - | chr8_2:45472730-45472749 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGAGTTATGAAA+TGG | - | chr8_2:45472787-45472806 | None:intergenic | 25.0% |
| ! | CAAAGAATTGTTAGAAAATG+GGG | + | chr8_2:45472865-45472884 | Msa1250190:exon | 25.0% |
| ! | CTTATTCATAAGAGACATTT+AGG | - | chr8_2:45473253-45473272 | None:intergenic | 25.0% |
| !!! | TTCATGTCCACAATTTTTTT+TGG | - | chr8_2:45473339-45473358 | None:intergenic | 25.0% |
| !! | AAAATTGTGGACATGAATTT+TGG | + | chr8_2:45473342-45473361 | Msa1250190:intron | 25.0% |
| ! | GTTTCGTTATAGTTTCAAAT+TGG | + | chr8_2:45473511-45473530 | Msa1250190:intron | 25.0% |
| ! | TAGATTATCATCGTGAATTT+AGG | - | chr8_2:45474209-45474228 | None:intergenic | 25.0% |
| !!! | AAAAAGTGTTAAAATAGGTG+TGG | - | chr8_2:45474592-45474611 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | - | chr8_2:45474794-45474813 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTGTGTTGTGTC+AGG | + | chr8_2:45475006-45475025 | Msa1250190:intron | 25.0% |
| ! | TATTGGAAGGAACATAATTA+AGG | - | chr8_2:45475202-45475221 | None:intergenic | 25.0% |
| ! | GGCAATTACATGAATTATAT+TGG | - | chr8_2:45475219-45475238 | None:intergenic | 25.0% |
| !!! | GATATAATGGATTAACAGTT+GGG | - | chr8_2:45475316-45475335 | None:intergenic | 25.0% |
| !!! | TGATATAATGGATTAACAGT+TGG | - | chr8_2:45475317-45475336 | None:intergenic | 25.0% |
| AAAATGTGATATTGGAGTGA+GGG | - | chr8_2:45472365-45472384 | None:intergenic | 30.0% | |
| AATAAATGAACATGACGTGA+CGG | - | chr8_2:45472558-45472577 | None:intergenic | 30.0% | |
| ! | CAGAGTACTCTGTTTATTTA+TGG | - | chr8_2:45472587-45472606 | None:intergenic | 30.0% |
| ! | ATGATGATGAATGATGATGA+TGG | - | chr8_2:45472636-45472655 | None:intergenic | 30.0% |
| !!! | AAACTGTTTTTTCTCTGACA+TGG | - | chr8_2:45472707-45472726 | None:intergenic | 30.0% |
| CGTAGTACAGAGTTATTATT+AGG | - | chr8_2:45472737-45472756 | None:intergenic | 30.0% | |
| ! | ACATCTAGTTCAACAAAAGT+TGG | + | chr8_2:45473182-45473201 | Msa1250190:intron | 30.0% |
| ATGTCTCTTATGAATAAGAC+CGG | + | chr8_2:45473255-45473274 | Msa1250190:intron | 30.0% | |
| TAAACTTGGGAAATTGTTGA+AGG | + | chr8_2:45473409-45473428 | Msa1250190:CDS | 30.0% | |
| TTAATTACCTTAACTGGACT+AGG | - | chr8_2:45473491-45473510 | None:intergenic | 30.0% | |
| CGAAACTTAATTACCTTAAC+TGG | - | chr8_2:45473497-45473516 | None:intergenic | 30.0% | |
| AAAGTCAATTGCAAAAAAGG+TGG | - | chr8_2:45473575-45473594 | None:intergenic | 30.0% | |
| AGCAAAGTCAATTGCAAAAA+AGG | - | chr8_2:45473578-45473597 | None:intergenic | 30.0% | |
| TTATGGATCGAATTCATGAT+GGG | + | chr8_2:45473867-45473886 | Msa1250190:intron | 30.0% | |
| TAATTCAGGTGTTAATGCTT+TGG | - | chr8_2:45473985-45474004 | None:intergenic | 30.0% | |
| TCTTAGTTAGGTAGTAATAG+TGG | - | chr8_2:45474089-45474108 | None:intergenic | 30.0% | |
| ACTATTACTACCTAACTAAG+AGG | + | chr8_2:45474088-45474107 | Msa1250190:intron | 30.0% | |
| TTCTTGTAAACCTCTTAGTT+AGG | - | chr8_2:45474101-45474120 | None:intergenic | 30.0% | |
| TTTACAAGAAACCGCAAAAT+AGG | + | chr8_2:45474111-45474130 | Msa1250190:intron | 30.0% | |
| !!! | AAACCGCAAAATAGGTTTTT+TGG | + | chr8_2:45474119-45474138 | Msa1250190:intron | 30.0% |
| ! | ATGCCAAAAAACCTATTTTG+CGG | - | chr8_2:45474125-45474144 | None:intergenic | 30.0% |
| ! | GTGAATTTAGGATAACTAAG+TGG | - | chr8_2:45474197-45474216 | None:intergenic | 30.0% |
| TAATCTAGTTGACTATGCAA+TGG | + | chr8_2:45474222-45474241 | Msa1250190:intron | 30.0% | |
| TGACTATGCAATGGAATATT+AGG | + | chr8_2:45474231-45474250 | Msa1250190:intron | 30.0% | |
| ATCCATCATTGTTTGGATTA+TGG | - | chr8_2:45474281-45474300 | None:intergenic | 30.0% | |
| GATAAAAGTTGCAGAACAAA+GGG | - | chr8_2:45474304-45474323 | None:intergenic | 30.0% | |
| TGATAAAAGTTGCAGAACAA+AGG | - | chr8_2:45474305-45474324 | None:intergenic | 30.0% | |
| AAACAAAAAGTCAGTAGCAT+TGG | + | chr8_2:45474380-45474399 | Msa1250190:intron | 30.0% | |
| ! | ATTGGTGATCTAACAATCAT+AGG | + | chr8_2:45474398-45474417 | Msa1250190:intron | 30.0% |
| TAGAGATTATGTAGCTCAAA+TGG | - | chr8_2:45474521-45474540 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr8_2:45474809-45474828 | None:intergenic | 30.0% | |
| AAATTCTGCAATGCTTTGTA+AGG | - | chr8_2:45475131-45475150 | None:intergenic | 30.0% | |
| !! | TTACAAAGCATTGCAGAATT+TGG | + | chr8_2:45475130-45475149 | Msa1250190:CDS | 30.0% |
| AGATTTATTTATGGGAGTGA+GGG | - | chr8_2:45475178-45475197 | None:intergenic | 30.0% | |
| AAGATTTATTTATGGGAGTG+AGG | - | chr8_2:45475179-45475198 | None:intergenic | 30.0% | |
| ACTACTACAAATTAAGAAGG+GGG | - | chr8_2:45475241-45475260 | None:intergenic | 30.0% | |
| CACTACTACAAATTAAGAAG+GGG | - | chr8_2:45475242-45475261 | None:intergenic | 30.0% | |
| GCACTACTACAAATTAAGAA+GGG | - | chr8_2:45475243-45475262 | None:intergenic | 30.0% | |
| TGCACTACTACAAATTAAGA+AGG | - | chr8_2:45475244-45475263 | None:intergenic | 30.0% | |
| TGTAGTAGTGCATTATACAT+AGG | + | chr8_2:45475252-45475271 | Msa1250190:three_prime_UTR | 30.0% | |
| TAACAGTTGGGTAATTACTA+AGG | - | chr8_2:45475304-45475323 | None:intergenic | 30.0% | |
| AAATGTGATATTGGAGTGAG+GGG | - | chr8_2:45472364-45472383 | None:intergenic | 35.0% | |
| GAAAATGTGATATTGGAGTG+AGG | - | chr8_2:45472366-45472385 | None:intergenic | 35.0% | |
| !! | GTCACATCCATATTGATTTG+TGG | + | chr8_2:45472492-45472511 | Msa1250190:five_prime_UTR | 35.0% |
| GCAAGATTGAGAGGATTTAT+TGG | + | chr8_2:45472937-45472956 | Msa1250190:CDS | 35.0% | |
| GAGGTTATGAATTCAAATCC+TGG | + | chr8_2:45472975-45472994 | Msa1250190:CDS | 35.0% | |
| CCATTCTCAGATTTAAGAGT+AGG | - | chr8_2:45473029-45473048 | None:intergenic | 35.0% | |
| CCTACTCTTAAATCTGAGAA+TGG | + | chr8_2:45473026-45473045 | Msa1250190:CDS | 35.0% | |
| AGAAGCTTGAGATGTTTCAA+TGG | - | chr8_2:45473056-45473075 | None:intergenic | 35.0% | |
| !! | TATCGCTTGATCAGTTTTGA+AGG | + | chr8_2:45473110-45473129 | Msa1250190:CDS | 35.0% |
| ! | ATTGTGGACATGAATTTTGG+TGG | + | chr8_2:45473345-45473364 | Msa1250190:intron | 35.0% |
| !! | TTGTGGACATGAATTTTGGT+GGG | + | chr8_2:45473346-45473365 | Msa1250190:intron | 35.0% |
| TCGAAGAAATGTGGTAAACT+TGG | + | chr8_2:45473395-45473414 | Msa1250190:CDS | 35.0% | |
| CGAAGAAATGTGGTAAACTT+GGG | + | chr8_2:45473396-45473415 | Msa1250190:CDS | 35.0% | |
| AAATTGTTGAAGGAAACTGG+TGG | + | chr8_2:45473419-45473438 | Msa1250190:CDS | 35.0% | |
| CTCTTGTTAGACATAGAGTA+AGG | + | chr8_2:45473541-45473560 | Msa1250190:intron | 35.0% | |
| AAACCGATCGTTATACCTTA+TGG | + | chr8_2:45473850-45473869 | Msa1250190:intron | 35.0% | |
| GATCCATAAGGTATAACGAT+CGG | - | chr8_2:45473856-45473875 | None:intergenic | 35.0% | |
| CATCATGAATTCGATCCATA+AGG | - | chr8_2:45473868-45473887 | None:intergenic | 35.0% | |
| CTTATGGATCGAATTCATGA+TGG | + | chr8_2:45473866-45473885 | Msa1250190:intron | 35.0% | |
| ! | TCATAGCAACCAAAAGGTTT+TGG | - | chr8_2:45474056-45474075 | None:intergenic | 35.0% |
| !!! | AAATAGGTTTTTTGGCATGC+AGG | + | chr8_2:45474127-45474146 | Msa1250190:intron | 35.0% |
| !!! | AATAGGTTTTTTGGCATGCA+GGG | + | chr8_2:45474128-45474147 | Msa1250190:intron | 35.0% |
| CTCCATAATCCAAACAATGA+TGG | + | chr8_2:45474276-45474295 | Msa1250190:intron | 35.0% | |
| GTGATCTAACAATCATAGGA+CGG | + | chr8_2:45474402-45474421 | Msa1250190:intron | 35.0% | |
| GTAAATGAGTCAGATATTCC+AGG | - | chr8_2:45474666-45474685 | None:intergenic | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | + | chr8_2:45474838-45474857 | Msa1250190:intron | 35.0% | |
| AGGGAGTAAAGTGTATTGTT+TGG | + | chr8_2:45474880-45474899 | Msa1250190:intron | 35.0% | |
| ! | GGCATTTTCTCTTTACATCT+TGG | + | chr8_2:45474947-45474966 | Msa1250190:intron | 35.0% |
| !! | ATAAAGGCACTGCATATGAT+AGG | - | chr8_2:45474981-45475000 | None:intergenic | 35.0% |
| !! | TATTTTTGTGTTGTGTCAGG+TGG | + | chr8_2:45475009-45475028 | Msa1250190:intron | 35.0% |
| ! | AGAAGCAATAACAGAAGTGT+TGG | + | chr8_2:45475067-45475086 | Msa1250190:CDS | 35.0% |
| !! | AGTGTTGGAAGACATTTTGT+TGG | + | chr8_2:45475082-45475101 | Msa1250190:CDS | 35.0% |
| CTACTACAAATTAAGAAGGG+GGG | - | chr8_2:45475240-45475259 | None:intergenic | 35.0% | |
| ! | GGGTGAACAGAGAAAAGTAT+GGG | - | chr8_2:45472343-45472362 | None:intergenic | 40.0% |
| AATGTGATATTGGAGTGAGG+GGG | - | chr8_2:45472363-45472382 | None:intergenic | 40.0% | |
| CATTTACGCTTCAGTAGTGT+TGG | + | chr8_2:45472470-45472489 | Msa1250190:five_prime_UTR | 40.0% | |
| GAAGTGAAGTGAAGTGAAGT+GGG | - | chr8_2:45472840-45472859 | None:intergenic | 40.0% | |
| TGAAGTGAAGTGAAGTGAAG+TGG | - | chr8_2:45472841-45472860 | None:intergenic | 40.0% | |
| GAATTGTCAAGCTGCAGAAT+TGG | + | chr8_2:45472887-45472906 | Msa1250190:CDS | 40.0% | |
| ACAGTTGTGATACATCATCC+AGG | + | chr8_2:45472912-45472931 | Msa1250190:CDS | 40.0% | |
| CAGTTGTGATACATCATCCA+GGG | + | chr8_2:45472913-45472932 | Msa1250190:CDS | 40.0% | |
| ! | CCAATAAGCAAAGTGTCATC+AGG | - | chr8_2:45473083-45473102 | None:intergenic | 40.0% |
| CCTGATGACACTTTGCTTAT+TGG | + | chr8_2:45473080-45473099 | Msa1250190:CDS | 40.0% | |
| TGACACTTTGCTTATTGGTC+AGG | + | chr8_2:45473085-45473104 | Msa1250190:CDS | 40.0% | |
| GGTATGCCTAAGTCGAAATT+TGG | + | chr8_2:45473203-45473222 | Msa1250190:intron | 40.0% | |
| TCTCTTATGAATAAGACCGG+AGG | + | chr8_2:45473258-45473277 | Msa1250190:intron | 40.0% | |
| CTCTTATGAATAAGACCGGA+GGG | + | chr8_2:45473259-45473278 | Msa1250190:intron | 40.0% | |
| TTGAAAATTGACACTCCCTC+CGG | - | chr8_2:45473277-45473296 | None:intergenic | 40.0% | |
| ! | GTGGGTTGTAGATGTATTGA+AGG | + | chr8_2:45473364-45473383 | Msa1250190:intron | 40.0% |
| ! | GAGTTTGCTTCGAAGAAATG+TGG | + | chr8_2:45473386-45473405 | Msa1250190:CDS | 40.0% |
| GGGAAATTGTTGAAGGAAAC+TGG | + | chr8_2:45473416-45473435 | Msa1250190:CDS | 40.0% | |
| ! | ACCTTAACTGGACTAGGATT+CGG | - | chr8_2:45473485-45473504 | None:intergenic | 40.0% |
| ! | TATAACGATCGGTTTCAACG+TGG | - | chr8_2:45473845-45473864 | None:intergenic | 40.0% |
| ! | GGTGTTAATGCTTTGGATCT+CGG | - | chr8_2:45473978-45473997 | None:intergenic | 40.0% |
| !! | AGCAACCAAAAGGTTTTGGT+AGG | - | chr8_2:45474052-45474071 | None:intergenic | 40.0% |
| CCAACATCATAGCAACCAAA+AGG | - | chr8_2:45474062-45474081 | None:intergenic | 40.0% | |
| !! | CCTTTTGGTTGCTATGATGT+TGG | + | chr8_2:45474059-45474078 | Msa1250190:intron | 40.0% |
| !!! | ATAGGTTTTTTGGCATGCAG+GGG | + | chr8_2:45474129-45474148 | Msa1250190:intron | 40.0% |
| CAAAGGGATCCATCATTGTT+TGG | - | chr8_2:45474288-45474307 | None:intergenic | 40.0% | |
| TTCATGAGATGGAAACGTGA+AGG | - | chr8_2:45474337-45474356 | None:intergenic | 40.0% | |
| !! | TTGGTAGTGCTTTCATGAGA+TGG | - | chr8_2:45474348-45474367 | None:intergenic | 40.0% |
| CTAACAATCATAGGACGGTA+TGG | + | chr8_2:45474407-45474426 | Msa1250190:intron | 40.0% | |
| ! | AGGGAGTAGTAAATTTGGTG+CGG | - | chr8_2:45474639-45474658 | None:intergenic | 40.0% |
| ATGAGTCAGATATTCCAGGA+CGG | - | chr8_2:45474662-45474681 | None:intergenic | 40.0% | |
| ! | GTTGGAAGACATTTTGTTGG+TGG | + | chr8_2:45475085-45475104 | Msa1250190:CDS | 40.0% |
| !!! | AGACATTTTGTTGGTGGTAG+TGG | + | chr8_2:45475091-45475110 | Msa1250190:CDS | 40.0% |
| GGGGTGAACAGAGAAAAGTA+TGG | - | chr8_2:45472344-45472363 | None:intergenic | 45.0% | |
| ACGCACGCCACAAATCAATA+TGG | - | chr8_2:45472502-45472521 | None:intergenic | 45.0% | |
| TTGGTCTGTTAGTGCTCATG+AGG | + | chr8_2:45472956-45472975 | Msa1250190:CDS | 45.0% | |
| ACAAGAGCAACATAGTGACC+AGG | - | chr8_2:45472996-45473015 | None:intergenic | 45.0% | |
| TGCGGTCCAAATTTCGACTT+AGG | - | chr8_2:45473212-45473231 | None:intergenic | 45.0% | |
| AAGGAAACTGGTGGTAGTCA+TGG | + | chr8_2:45473428-45473447 | Msa1250190:CDS | 45.0% | |
| AGGAAACTGGTGGTAGTCAT+GGG | + | chr8_2:45473429-45473448 | Msa1250190:CDS | 45.0% | |
| TCCGAATCCTAGTCCAGTTA+AGG | + | chr8_2:45473481-45473500 | Msa1250190:CDS | 45.0% | |
| ! | TGCGTCCTACCAAAACCTTT+TGG | + | chr8_2:45474044-45474063 | Msa1250190:intron | 45.0% |
| GACGGAGGGAGTAGTAAATT+TGG | - | chr8_2:45474644-45474663 | None:intergenic | 45.0% | |
| ! | CCAAACTGGCTCAGATATTC+CGG | + | chr8_2:45474852-45474871 | Msa1250190:intron | 45.0% |
| ! | CAAACTGGCTCAGATATTCC+GGG | + | chr8_2:45474853-45474872 | Msa1250190:intron | 45.0% |
| TCTGCAATGCTTTGTAAGGC+TGG | - | chr8_2:45475127-45475146 | None:intergenic | 45.0% | |
| CCAGGCAGACATAAGGAAAA+TGG | - | chr8_2:45475373-45475392 | None:intergenic | 45.0% | |
| ! | CCATTTTCCTTATGTCTGCC+TGG | + | chr8_2:45475370-45475389 | Msa1250190:three_prime_UTR | 45.0% |
| TTCCTTATGTCTGCCTGGTT+TGG | + | chr8_2:45475375-45475394 | Msa1250190:three_prime_UTR | 45.0% | |
| TTCCAAACCAGGCAGACATA+AGG | - | chr8_2:45475380-45475399 | None:intergenic | 45.0% | |
| !!! | TTGAATTTTAAATTTATAAT+AGG | - | chr8_2:45473721-45473740 | None:intergenic | 5.0% |
| !!! | TTAAAATTCAATTTTTAATT+AGG | + | chr8_2:45473730-45473749 | Msa1250190:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAAGTAA+AGG | + | chr8_2:45474465-45474484 | Msa1250190:intron | 5.0% |
| AACATGACGTGACGGTAGCT+AGG | - | chr8_2:45472550-45472569 | None:intergenic | 50.0% | |
| ATCCAGGGAGCAAGATTGAG+AGG | + | chr8_2:45472928-45472947 | Msa1250190:CDS | 50.0% | |
| ATCCTCTCAATCTTGCTCCC+TGG | - | chr8_2:45472933-45472952 | None:intergenic | 50.0% | |
| ATTTACTACTCCCTCCGTCC+TGG | + | chr8_2:45474645-45474664 | Msa1250190:intron | 50.0% | |
| GTCAGATATTCCAGGACGGA+GGG | - | chr8_2:45474658-45474677 | None:intergenic | 50.0% | |
| AGTCAGATATTCCAGGACGG+AGG | - | chr8_2:45474659-45474678 | None:intergenic | 50.0% | |
| CCGGAATATCTGAGCCAGTT+TGG | - | chr8_2:45474855-45474874 | None:intergenic | 50.0% | |
| TGTGTTGTGTCAGGTGGAAC+AGG | + | chr8_2:45475015-45475034 | Msa1250190:intron | 50.0% | |
| ACTCAACGAACGGAGAGCAA+TGG | + | chr8_2:45475040-45475059 | Msa1250190:CDS | 50.0% | |
| !! | TTGTTGGTGGTAGTGGCCAA+TGG | + | chr8_2:45475098-45475117 | Msa1250190:CDS | 50.0% |
| !! | TTTGTAAGGCTGGCCTCCAT+TGG | - | chr8_2:45475117-45475136 | None:intergenic | 50.0% |
| ! | TGGACTAGGATTCGGAGCTC+TGG | - | chr8_2:45473477-45473496 | None:intergenic | 55.0% |
| CTGGCTCAGATATTCCGGGA+CGG | + | chr8_2:45474857-45474876 | Msa1250190:intron | 55.0% | |
| CTCAGATATTCCGGGACGGA+GGG | + | chr8_2:45474861-45474880 | Msa1250190:intron | 55.0% | |
| ACACTTTACTCCCTCCGTCC+CGG | - | chr8_2:45474874-45474893 | None:intergenic | 55.0% | |
| GGAACAGGCGACTCAACGAA+CGG | + | chr8_2:45475030-45475049 | Msa1250190:CDS | 55.0% | |
| !! | TTGGTGGTAGTGGCCAATGG+AGG | + | chr8_2:45475101-45475120 | Msa1250190:CDS | 55.0% |
| ! | TTTGGCATGCAGGGGCGCAT+AGG | + | chr8_2:45474137-45474156 | Msa1250190:intron | 60.0% |
| GCTCAGATATTCCGGGACGG+AGG | + | chr8_2:45474860-45474879 | Msa1250190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 45472335 | 45475407 | 45472335 | ID=Msa1250190;Name=Msa1250190 |
| chr8_2 | mRNA | 45472335 | 45475407 | 45472335 | ID=Msa1250190-mRNA-1;Parent=Msa1250190;Name=Msa1250190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=547|1|1|1|1|1|3|248|169 |
| chr8_2 | exon | 45472335 | 45473131 | 45472335 | ID=Msa1250190-mRNA-1:exon:13734;Parent=Msa1250190-mRNA-1 |
| chr8_2 | exon | 45473375 | 45473502 | 45473375 | ID=Msa1250190-mRNA-1:exon:13735;Parent=Msa1250190-mRNA-1 |
| chr8_2 | exon | 45475028 | 45475407 | 45475028 | ID=Msa1250190-mRNA-1:exon:13736;Parent=Msa1250190-mRNA-1 |
| chr8_2 | five_prime_UTR | 45472335 | 45472881 | 45472335 | ID=Msa1250190-mRNA-1:five_prime_utr;Parent=Msa1250190-mRNA-1 |
| chr8_2 | CDS | 45472882 | 45473131 | 45472882 | ID=Msa1250190-mRNA-1:cds;Parent=Msa1250190-mRNA-1 |
| chr8_2 | CDS | 45473375 | 45473502 | 45473375 | ID=Msa1250190-mRNA-1:cds;Parent=Msa1250190-mRNA-1 |
| chr8_2 | CDS | 45475028 | 45475159 | 45475028 | ID=Msa1250190-mRNA-1:cds;Parent=Msa1250190-mRNA-1 |
| chr8_2 | three_prime_UTR | 45475160 | 45475407 | 45475160 | ID=Msa1250190-mRNA-1:three_prime_utr;Parent=Msa1250190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
