Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205990 | XP_003608539.1 | 95.238 | 168 | 8 | 0 | 1 | 168 | 1 | 168 | 1.21e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0761310 | Msa1205990 | 0.808287 | 3.335518e-50 | -8.615850e-47 |
| Msa0123800 | Msa1205990 | 0.822442 | 2.364351e-53 | -8.615850e-47 |
| Msa0176220 | Msa1205990 | 0.835552 | 1.570357e-56 | -8.615850e-47 |
| Msa1205180 | Msa1205990 | 0.810748 | 9.878108e-51 | -8.615850e-47 |
| Msa1205990 | Msa1250190 | 0.874076 | 8.955318e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205990 | MtrunA17_Chr4g0054191 | 95.238 | 168 | 8 | 0 | 1 | 168 | 1 | 168 | 1.12e-119 | 335 |
| Msa1205990 | MtrunA17_Chr4g0059361 | 38.830 | 188 | 94 | 4 | 1 | 168 | 1 | 187 | 3.35e-35 | 121 |
| Msa1205990 | MtrunA17_Chr3g0117971 | 34.737 | 190 | 95 | 5 | 1 | 168 | 1 | 183 | 2.24e-30 | 108 |
| Msa1205990 | MtrunA17_Chr5g0414281 | 40.000 | 170 | 96 | 2 | 1 | 165 | 1 | 169 | 5.70e-30 | 107 |
| Msa1205990 | MtrunA17_Chr8g0364591 | 37.037 | 189 | 80 | 6 | 1 | 167 | 1 | 172 | 7.57e-27 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205990 | AT5G67620.1 | 54.839 | 186 | 61 | 5 | 1 | 168 | 1 | 181 | 4.86e-61 | 187 |
| Msa1205990 | AT5G62900.1 | 39.181 | 171 | 85 | 4 | 1 | 165 | 1 | 158 | 2.67e-31 | 110 |
| Msa1205990 | AT5G50090.1 | 41.040 | 173 | 82 | 4 | 1 | 168 | 1 | 158 | 1.25e-29 | 106 |
| Msa1205990 | AT5G50090.2 | 42.529 | 174 | 72 | 6 | 1 | 168 | 1 | 152 | 9.57e-29 | 104 |
| Msa1205990 | AT5G50090.3 | 50.962 | 104 | 46 | 2 | 1 | 99 | 1 | 104 | 9.81e-25 | 93.6 |
| Msa1205990 | AT1G60010.1 | 32.609 | 184 | 91 | 4 | 1 | 165 | 1 | 170 | 2.85e-24 | 93.2 |
| Msa1205990 | AT1G10530.1 | 34.637 | 179 | 87 | 5 | 1 | 165 | 1 | 163 | 4.84e-23 | 90.1 |
Find 82 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGTACTCTGTTTATTTA+TGG | 0.088386 | 8_1:-62722878 | None:intergenic |
| CCTGATGACACTTTGCTTAT+TGG | 0.123509 | 8_1:+62723363 | Msa1205990:CDS |
| CAGAGTTATTATTAGGATTA+AGG | 0.148932 | 8_1:-62723009 | None:intergenic |
| TTACAAAGCATTGCAGAATT+TGG | 0.165154 | 8_1:+62725154 | Msa1205990:CDS |
| AACAAAGAATTGTTAGAAAA+TGG | 0.170409 | 8_1:+62723146 | Msa1205990:exon |
| CGTAGTACAGAGTTATTATT+AGG | 0.216664 | 8_1:-62723016 | None:intergenic |
| TGAAACTTAATTACCTTAAC+TGG | 0.236093 | 8_1:-62723773 | None:intergenic |
| CCAGTTTGACATATGGAAAA+TGG | 0.247954 | 8_1:-62725393 | None:intergenic |
| GGCAATTACATGAATTATAT+TGG | 0.258017 | 8_1:-62725241 | None:intergenic |
| ATTGGAAGGAACATAATTAA+AGG | 0.268010 | 8_1:-62725223 | None:intergenic |
| GCAAGATTGAGAGGATTTAT+TGG | 0.272858 | 8_1:+62723220 | Msa1205990:CDS |
| TTATGATTTATTTGCAATAG+TGG | 0.309204 | 8_1:-62722675 | None:intergenic |
| TTCCATATGTCAAACTGGTT+TGG | 0.357636 | 8_1:+62725398 | Msa1205990:three_prime_UTR |
| ACAAAGAATTGTTAGAAAAT+GGG | 0.367585 | 8_1:+62723147 | Msa1205990:exon |
| AAATTCTGCAATGCTTTGTA+AGG | 0.387024 | 8_1:-62725152 | None:intergenic |
| TTCCAAACCAGTTTGACATA+TGG | 0.388161 | 8_1:-62725400 | None:intergenic |
| TGACACTTTGCTTATTGGTC+AGG | 0.391638 | 8_1:+62723368 | Msa1205990:CDS |
| ACGCACGCCACAAATCAATA+TGG | 0.398343 | 8_1:-62722793 | None:intergenic |
| GAATTGTCAAGCTGCAGAAT+TGG | 0.405080 | 8_1:+62723170 | Msa1205990:CDS |
| GTCACATCCATATTGATTTG+TGG | 0.417103 | 8_1:+62722786 | Msa1205990:five_prime_UTR |
| TGTTGTGTTGAGTTATGAAA+TGG | 0.420225 | 8_1:-62723066 | None:intergenic |
| TCGAAGAAATGTGGTAAACT+TGG | 0.433100 | 8_1:+62723677 | Msa1205990:CDS |
| TGTGTTGTGTCAGGTGGAAC+AGG | 0.443905 | 8_1:+62725039 | Msa1205990:intron |
| ACCTTAACTGGACTAGGATT+CGG | 0.447919 | 8_1:-62723761 | None:intergenic |
| AATAGTGGAAAATGTGATAT+TGG | 0.449655 | 8_1:-62722660 | None:intergenic |
| GTGGGTTGTAGATGTATTGA+AGG | 0.454729 | 8_1:+62723646 | Msa1205990:intron |
| CATTTACGCTTCAGTAGTGT+TGG | 0.454823 | 8_1:+62722764 | Msa1205990:five_prime_UTR |
| TCCGAATCCTAGTCCAGTTA+AGG | 0.460882 | 8_1:+62723760 | Msa1205990:CDS |
| TCTGCAATGCTTTGTAAGGC+TGG | 0.461811 | 8_1:-62725148 | None:intergenic |
| TTTGTAAGGCTGGCCTCCAT+TGG | 0.463118 | 8_1:-62725138 | None:intergenic |
| AATACTATTATTAATGAGAA+TGG | 0.468716 | 8_1:-62722738 | None:intergenic |
| AAGATTTATTTATGAGAGTG+AGG | 0.469546 | 8_1:-62725200 | None:intergenic |
| TAACAGTTGGGTAATTACTA+AGG | 0.472552 | 8_1:-62725325 | None:intergenic |
| TGCACTACTACAAATTAAGA+AGG | 0.472876 | 8_1:-62725265 | None:intergenic |
| TGTAGTAGTGCATTATACAT+AGG | 0.474686 | 8_1:+62725276 | Msa1205990:three_prime_UTR |
| GATAGAATGGATTAACAGTT+GGG | 0.480906 | 8_1:-62725337 | None:intergenic |
| AACAAAATAGCATGATAGAA+TGG | 0.492631 | 8_1:-62725350 | None:intergenic |
| AGAAGCAATAACAGAAGTGT+TGG | 0.498291 | 8_1:+62725091 | Msa1205990:CDS |
| TTGAAGGAGAGTGGTAATCA+TGG | 0.498388 | 8_1:+62723707 | Msa1205990:CDS |
| TGATAGAATGGATTAACAGT+TGG | 0.502439 | 8_1:-62725338 | None:intergenic |
| TAAACTTGGGAAATTGTTGA+AGG | 0.502500 | 8_1:+62723691 | Msa1205990:CDS |
| CCAATAAGCAAAGTGTCATC+AGG | 0.507918 | 8_1:-62723363 | None:intergenic |
| GGGAAATTGTTGAAGGAGAG+TGG | 0.509749 | 8_1:+62723698 | Msa1205990:CDS |
| GCACTACTACAAATTAAGAA+GGG | 0.510827 | 8_1:-62725264 | None:intergenic |
| ATCCTCTCAATCTTGCTCCC+TGG | 0.517252 | 8_1:-62723213 | None:intergenic |
| CAAAGAATTGTTAGAAAATG+GGG | 0.524195 | 8_1:+62723148 | Msa1205990:exon |
| AGAGAAAAGTATGGGATGAA+AGG | 0.526164 | 8_1:-62722623 | None:intergenic |
| TTGGTCTGTTAGTGCTCATG+AGG | 0.527619 | 8_1:+62723239 | Msa1205990:CDS |
| AGATTTATTTATGAGAGTGA+GGG | 0.529119 | 8_1:-62725199 | None:intergenic |
| CGAAGAAATGTGGTAAACTT+GGG | 0.529302 | 8_1:+62723678 | Msa1205990:CDS |
| GTTGTGTTGAGTTATGAAAT+GGG | 0.529606 | 8_1:-62723065 | None:intergenic |
| TGAAGGAGAGTGGTAATCAT+GGG | 0.531959 | 8_1:+62723708 | Msa1205990:CDS |
| CCATTCTCAGATTTAAGAGT+AGG | 0.536503 | 8_1:-62723309 | None:intergenic |
| TTGTTGGTGGTAGTGGCCAA+TGG | 0.537451 | 8_1:+62725122 | Msa1205990:CDS |
| GAGGTTATGAATTCAAATCC+TGG | 0.537803 | 8_1:+62723258 | Msa1205990:CDS |
| CCTACTCTTAAATCTGAGAA+TGG | 0.540696 | 8_1:+62723309 | Msa1205990:CDS |
| AGAAGCTTGAGATGTTTCAA+TGG | 0.541690 | 8_1:-62723336 | None:intergenic |
| TTAATTACCTTAACTGGACT+AGG | 0.548847 | 8_1:-62723767 | None:intergenic |
| GGATGATATGAATTGTTATG+TGG | 0.550340 | 8_1:-62722711 | None:intergenic |
| AGAATGATGATGAATGATGA+TGG | 0.553575 | 8_1:-62722917 | None:intergenic |
| ATTACATGAATTATATTGGA+AGG | 0.554922 | 8_1:-62725237 | None:intergenic |
| ACAGTTGTGATACATCATCC+AGG | 0.558304 | 8_1:+62723195 | Msa1205990:CDS |
| ATTATTAATGAGAATGGTGA+AGG | 0.566202 | 8_1:-62722732 | None:intergenic |
| AACATGACGTGACGGTAGCT+AGG | 0.578567 | 8_1:-62722841 | None:intergenic |
| GGGGTGAACAGAGAAAAGTA+TGG | 0.582402 | 8_1:-62722632 | None:intergenic |
| GATGATATGAATTGTTATGT+GGG | 0.592760 | 8_1:-62722710 | None:intergenic |
| ACTCAACGAGCGGAGAGCAA+TGG | 0.597496 | 8_1:+62725064 | Msa1205990:CDS |
| GGGTGAACAGAGAAAAGTAT+GGG | 0.598352 | 8_1:-62722631 | None:intergenic |
| CACTACTACAAATTAAGAAG+GGG | 0.601904 | 8_1:-62725263 | None:intergenic |
| ATCCAGGGAGCAAGATTGAG+AGG | 0.609389 | 8_1:+62723211 | Msa1205990:CDS |
| GAGTTTGCTTCGAAGAAATG+TGG | 0.621219 | 8_1:+62723668 | Msa1205990:CDS |
| GAAGTGAAGTGAAGTGAAGT+GGG | 0.623956 | 8_1:-62723120 | None:intergenic |
| AAAATGTGATATTGGAGTGA+GGG | 0.626331 | 8_1:-62722652 | None:intergenic |
| AATAAATGAACATGACGTGA+CGG | 0.642233 | 8_1:-62722849 | None:intergenic |
| TGAAGTGAAGTGAAGTGAAG+TGG | 0.643546 | 8_1:-62723121 | None:intergenic |
| GAAAATGTGATATTGGAGTG+AGG | 0.644486 | 8_1:-62722653 | None:intergenic |
| TTGGTGGTAGTGGCCAATGG+AGG | 0.645219 | 8_1:+62725125 | Msa1205990:CDS |
| ACAAGAGCAACATAGTGACC+AGG | 0.657647 | 8_1:-62723276 | None:intergenic |
| CAGTTGTGATACATCATCCA+GGG | 0.658613 | 8_1:+62723196 | Msa1205990:CDS |
| AAATGTGATATTGGAGTGAG+GGG | 0.683286 | 8_1:-62722651 | None:intergenic |
| ACTACTACAAATTAAGAAGG+GGG | 0.687816 | 8_1:-62725262 | None:intergenic |
| GGAACAGGAGACTCAACGAG+CGG | 0.719600 | 8_1:+62725054 | Msa1205990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTATGTTATATTATTATT+TGG | - | chr8_1:62723421-62723440 | None:intergenic | 10.0% |
| !! | AATACTATTATTAATGAGAA+TGG | - | chr8_1:62722741-62722760 | None:intergenic | 15.0% |
| !! | TAAATTTACCAAAAAAATTG+TGG | + | chr8_1:62723611-62723630 | Msa1205990:intron | 15.0% |
| !! | TTAATGTTATAGTTTCAAAT+TGG | + | chr8_1:62723798-62723817 | Msa1205990:intron | 15.0% |
| !!! | TTACTTTTAACAAATTTTAG+AGG | + | chr8_1:62723970-62723989 | Msa1205990:intron | 15.0% |
| !! | CGATAATTATAAAAATGTAA+AGG | + | chr8_1:62724752-62724771 | Msa1205990:intron | 15.0% |
| !! | AAAAAAAAAAATGTATCGTT+TGG | + | chr8_1:62724896-62724915 | Msa1205990:intron | 15.0% |
| !! | CAAAAATAAAAGATGAATAA+AGG | - | chr8_1:62725021-62725040 | None:intergenic | 15.0% |
| !! | TTATGATTTATTTGCAATAG+TGG | - | chr8_1:62722678-62722697 | None:intergenic | 20.0% |
| !! | AACAAAGAATTGTTAGAAAA+TGG | + | chr8_1:62723146-62723165 | Msa1205990:exon | 20.0% |
| !! | ACAAAGAATTGTTAGAAAAT+GGG | + | chr8_1:62723147-62723166 | Msa1205990:exon | 20.0% |
| !! | TATTGTTAAATAAGACTAGA+AGG | - | chr8_1:62723446-62723465 | None:intergenic | 20.0% |
| !! | CGATTGAAAAATAATAATTC+AGG | - | chr8_1:62724285-62724304 | None:intergenic | 20.0% |
| !!! | TTTGTTTAGATTTGATGATT+TGG | - | chr8_1:62724664-62724683 | None:intergenic | 20.0% |
| !! | TACTATGATTTCTAATACAA+TGG | - | chr8_1:62724937-62724956 | None:intergenic | 20.0% |
| !! | TTAGAAATCATAGTATGATT+TGG | + | chr8_1:62724942-62724961 | Msa1205990:intron | 20.0% |
| !! | ATTACATGAATTATATTGGA+AGG | - | chr8_1:62725240-62725259 | None:intergenic | 20.0% |
| !! | AATAGTGGAAAATGTGATAT+TGG | - | chr8_1:62722663-62722682 | None:intergenic | 25.0% |
| ! | GATGATATGAATTGTTATGT+GGG | - | chr8_1:62722713-62722732 | None:intergenic | 25.0% |
| ! | ATTATTAATGAGAATGGTGA+AGG | - | chr8_1:62722735-62722754 | None:intergenic | 25.0% |
| ! | TGTGATAAAAACGTGTATAA+GGG | - | chr8_1:62722956-62722975 | None:intergenic | 25.0% |
| ! | ATGTGATAAAAACGTGTATA+AGG | - | chr8_1:62722957-62722976 | None:intergenic | 25.0% |
| ! | CAGAGTTATTATTAGGATTA+AGG | - | chr8_1:62723012-62723031 | None:intergenic | 25.0% |
| ! | CAAAGAATTGTTAGAAAATG+GGG | + | chr8_1:62723148-62723167 | Msa1205990:exon | 25.0% |
| ! | CTTATTCATAAGAGACATTT+AGG | - | chr8_1:62723536-62723555 | None:intergenic | 25.0% |
| !!! | ATTCATGTCCACAATTTTTT+TGG | - | chr8_1:62723622-62723641 | None:intergenic | 25.0% |
| !! | AAAATTGTGGACATGAATTT+TGG | + | chr8_1:62723624-62723643 | Msa1205990:intron | 25.0% |
| ! | TGAAACTTAATTACCTTAAC+TGG | - | chr8_1:62723776-62723795 | None:intergenic | 25.0% |
| !!! | TGTATTGACTGTTTTTTTAG+AGG | + | chr8_1:62724031-62724050 | Msa1205990:intron | 25.0% |
| ! | TAATTCAGGTGTTAATGATT+TGG | - | chr8_1:62724271-62724290 | None:intergenic | 25.0% |
| ! | TAGATTATCATCGTGAATTT+AGG | - | chr8_1:62724500-62724519 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTGTGTTGTGTC+AGG | + | chr8_1:62725030-62725049 | Msa1205990:intron | 25.0% |
| ! | AGATTTATTTATGAGAGTGA+GGG | - | chr8_1:62725202-62725221 | None:intergenic | 25.0% |
| ! | AAGATTTATTTATGAGAGTG+AGG | - | chr8_1:62725203-62725222 | None:intergenic | 25.0% |
| ! | ATTGGAAGGAACATAATTAA+AGG | - | chr8_1:62725226-62725245 | None:intergenic | 25.0% |
| ! | GGCAATTACATGAATTATAT+TGG | - | chr8_1:62725244-62725263 | None:intergenic | 25.0% |
| ! | AACAAAATAGCATGATAGAA+TGG | - | chr8_1:62725353-62725372 | None:intergenic | 25.0% |
| AAAATGTGATATTGGAGTGA+GGG | - | chr8_1:62722655-62722674 | None:intergenic | 30.0% | |
| GGATGATATGAATTGTTATG+TGG | - | chr8_1:62722714-62722733 | None:intergenic | 30.0% | |
| AATAAATGAACATGACGTGA+CGG | - | chr8_1:62722852-62722871 | None:intergenic | 30.0% | |
| ! | CAGAGTACTCTGTTTATTTA+TGG | - | chr8_1:62722881-62722900 | None:intergenic | 30.0% |
| ! | AGAATGATGATGAATGATGA+TGG | - | chr8_1:62722920-62722939 | None:intergenic | 30.0% |
| !!! | AAACTGTTTTTTCTCTGACA+AGG | - | chr8_1:62722989-62723008 | None:intergenic | 30.0% |
| CGTAGTACAGAGTTATTATT+AGG | - | chr8_1:62723019-62723038 | None:intergenic | 30.0% | |
| GTTGTGTTGAGTTATGAAAT+GGG | - | chr8_1:62723068-62723087 | None:intergenic | 30.0% | |
| TGTTGTGTTGAGTTATGAAA+TGG | - | chr8_1:62723069-62723088 | None:intergenic | 30.0% | |
| ! | ACATCTAGTTCAACAAAAGT+TGG | + | chr8_1:62723465-62723484 | Msa1205990:intron | 30.0% |
| ATGTCTCTTATGAATAAGAC+CGG | + | chr8_1:62723538-62723557 | Msa1205990:intron | 30.0% | |
| TAAACTTGGGAAATTGTTGA+AGG | + | chr8_1:62723691-62723710 | Msa1205990:CDS | 30.0% | |
| TTAATTACCTTAACTGGACT+AGG | - | chr8_1:62723770-62723789 | None:intergenic | 30.0% | |
| CTCTTGTTAGACATAGATTA+AGG | + | chr8_1:62723829-62723848 | Msa1205990:intron | 30.0% | |
| AGCAAAGTCAATTGCAAAAA+AGG | - | chr8_1:62723866-62723885 | None:intergenic | 30.0% | |
| ATTTATCAATCTCGAGTACT+CGG | - | chr8_1:62724234-62724253 | None:intergenic | 30.0% | |
| ACGCAACAACAAATTATTAG+TGG | - | chr8_1:62724315-62724334 | None:intergenic | 30.0% | |
| !!! | GAAACCGCAAAATAGTTTTT+TGG | + | chr8_1:62724399-62724418 | Msa1205990:intron | 30.0% |
| ! | CATGCCAAAAAACTATTTTG+CGG | - | chr8_1:62724406-62724425 | None:intergenic | 30.0% |
| !!! | AAAATAGTTTTTTGGCATGC+AGG | + | chr8_1:62724407-62724426 | Msa1205990:intron | 30.0% |
| !!! | AAATAGTTTTTTGGCATGCA+GGG | + | chr8_1:62724408-62724427 | Msa1205990:intron | 30.0% |
| ! | GTGAATTTAGGATAACTAAG+TGG | - | chr8_1:62724488-62724507 | None:intergenic | 30.0% |
| GGAACAAAAAGTGATAAAAG+TGG | - | chr8_1:62724613-62724632 | None:intergenic | 30.0% | |
| TTTATGAAATGGAAACGTGA+AGG | - | chr8_1:62724634-62724653 | None:intergenic | 30.0% | |
| !!! | TTGGTAGTGCTTTTATGAAA+TGG | - | chr8_1:62724645-62724664 | None:intergenic | 30.0% |
| AAACAAAAAGTTAGTACCAC+TGG | + | chr8_1:62724677-62724696 | Msa1205990:intron | 30.0% | |
| TATGATTGTTAGATTACCAG+TGG | - | chr8_1:62724696-62724715 | None:intergenic | 30.0% | |
| ACTGGTAATCTAACAATCAT+AGG | + | chr8_1:62724695-62724714 | Msa1205990:intron | 30.0% | |
| GTAATCTAACAATCATAGGA+CGG | + | chr8_1:62724699-62724718 | Msa1205990:intron | 30.0% | |
| GATTTCTAATACAATGGTCA+TGG | - | chr8_1:62724931-62724950 | None:intergenic | 30.0% | |
| AAATTCTGCAATGCTTTGTA+AGG | - | chr8_1:62725155-62725174 | None:intergenic | 30.0% | |
| !! | TTACAAAGCATTGCAGAATT+TGG | + | chr8_1:62725154-62725173 | Msa1205990:CDS | 30.0% |
| ACTACTACAAATTAAGAAGG+GGG | - | chr8_1:62725265-62725284 | None:intergenic | 30.0% | |
| CACTACTACAAATTAAGAAG+GGG | - | chr8_1:62725266-62725285 | None:intergenic | 30.0% | |
| GCACTACTACAAATTAAGAA+GGG | - | chr8_1:62725267-62725286 | None:intergenic | 30.0% | |
| TGCACTACTACAAATTAAGA+AGG | - | chr8_1:62725268-62725287 | None:intergenic | 30.0% | |
| TGTAGTAGTGCATTATACAT+AGG | + | chr8_1:62725276-62725295 | Msa1205990:three_prime_UTR | 30.0% | |
| TAACAGTTGGGTAATTACTA+AGG | - | chr8_1:62725328-62725347 | None:intergenic | 30.0% | |
| !! | GATAGAATGGATTAACAGTT+GGG | - | chr8_1:62725340-62725359 | None:intergenic | 30.0% |
| !! | TGATAGAATGGATTAACAGT+TGG | - | chr8_1:62725341-62725360 | None:intergenic | 30.0% |
| AAATGTGATATTGGAGTGAG+GGG | - | chr8_1:62722654-62722673 | None:intergenic | 35.0% | |
| GAAAATGTGATATTGGAGTG+AGG | - | chr8_1:62722656-62722675 | None:intergenic | 35.0% | |
| !! | GTCACATCCATATTGATTTG+TGG | + | chr8_1:62722786-62722805 | Msa1205990:five_prime_UTR | 35.0% |
| GCAAGATTGAGAGGATTTAT+TGG | + | chr8_1:62723220-62723239 | Msa1205990:CDS | 35.0% | |
| GAGGTTATGAATTCAAATCC+TGG | + | chr8_1:62723258-62723277 | Msa1205990:CDS | 35.0% | |
| CCATTCTCAGATTTAAGAGT+AGG | - | chr8_1:62723312-62723331 | None:intergenic | 35.0% | |
| CCTACTCTTAAATCTGAGAA+TGG | + | chr8_1:62723309-62723328 | Msa1205990:CDS | 35.0% | |
| AGAAGCTTGAGATGTTTCAA+TGG | - | chr8_1:62723339-62723358 | None:intergenic | 35.0% | |
| !! | TATCGCTTGATCAGTTTTGA+AGG | + | chr8_1:62723393-62723412 | Msa1205990:CDS | 35.0% |
| ! | ATTGTGGACATGAATTTTGG+TGG | + | chr8_1:62723627-62723646 | Msa1205990:intron | 35.0% |
| !! | TTGTGGACATGAATTTTGGT+GGG | + | chr8_1:62723628-62723647 | Msa1205990:intron | 35.0% |
| TCGAAGAAATGTGGTAAACT+TGG | + | chr8_1:62723677-62723696 | Msa1205990:CDS | 35.0% | |
| CGAAGAAATGTGGTAAACTT+GGG | + | chr8_1:62723678-62723697 | Msa1205990:CDS | 35.0% | |
| ATCGTTATACGCTACTGAAA+CGG | + | chr8_1:62724154-62724173 | Msa1205990:intron | 35.0% | |
| ATCATAGCAACCAAAAGGTT+TGG | - | chr8_1:62724342-62724361 | None:intergenic | 35.0% | |
| !!! | AATAGTTTTTTGGCATGCAG+GGG | + | chr8_1:62724409-62724428 | Msa1205990:intron | 35.0% |
| TGACTATGCAACGGAATATT+AGG | + | chr8_1:62724529-62724548 | Msa1205990:intron | 35.0% | |
| GATCATCATTGTTTGGATTG+TGG | - | chr8_1:62724579-62724598 | None:intergenic | 35.0% | |
| ACAAAGGGATCATCATTGTT+TGG | - | chr8_1:62724586-62724605 | None:intergenic | 35.0% | |
| GATAAAAGTGGCAGAACAAA+GGG | - | chr8_1:62724601-62724620 | None:intergenic | 35.0% | |
| TGATAAAAGTGGCAGAACAA+AGG | - | chr8_1:62724602-62724621 | None:intergenic | 35.0% | |
| TCTAATACAATGGTCATGGA+TGG | - | chr8_1:62724927-62724946 | None:intergenic | 35.0% | |
| ! | GCATTTTTCCCTTTATCTCT+TGG | + | chr8_1:62724964-62724983 | Msa1205990:intron | 35.0% |
| !! | TATTTTTGTGTTGTGTCAGG+TGG | + | chr8_1:62725033-62725052 | Msa1205990:intron | 35.0% |
| ! | AGAAGCAATAACAGAAGTGT+TGG | + | chr8_1:62725091-62725110 | Msa1205990:CDS | 35.0% |
| !! | AGTGTTGGAAGACATTTTGT+TGG | + | chr8_1:62725106-62725125 | Msa1205990:CDS | 35.0% |
| CCAGTTTGACATATGGAAAA+TGG | - | chr8_1:62725396-62725415 | None:intergenic | 35.0% | |
| ! | CCATTTTCCATATGTCAAAC+TGG | + | chr8_1:62725393-62725412 | Msa1205990:three_prime_UTR | 35.0% |
| TTCCATATGTCAAACTGGTT+TGG | + | chr8_1:62725398-62725417 | Msa1205990:three_prime_UTR | 35.0% | |
| TTCCAAACCAGTTTGACATA+TGG | - | chr8_1:62725403-62725422 | None:intergenic | 35.0% | |
| ! | GGGTGAACAGAGAAAAGTAT+GGG | - | chr8_1:62722634-62722653 | None:intergenic | 40.0% |
| CATTTACGCTTCAGTAGTGT+TGG | + | chr8_1:62722764-62722783 | Msa1205990:five_prime_UTR | 40.0% | |
| GAAGTGAAGTGAAGTGAAGT+GGG | - | chr8_1:62723123-62723142 | None:intergenic | 40.0% | |
| TGAAGTGAAGTGAAGTGAAG+TGG | - | chr8_1:62723124-62723143 | None:intergenic | 40.0% | |
| GAATTGTCAAGCTGCAGAAT+TGG | + | chr8_1:62723170-62723189 | Msa1205990:CDS | 40.0% | |
| ACAGTTGTGATACATCATCC+AGG | + | chr8_1:62723195-62723214 | Msa1205990:CDS | 40.0% | |
| CAGTTGTGATACATCATCCA+GGG | + | chr8_1:62723196-62723215 | Msa1205990:CDS | 40.0% | |
| ! | CCAATAAGCAAAGTGTCATC+AGG | - | chr8_1:62723366-62723385 | None:intergenic | 40.0% |
| CCTGATGACACTTTGCTTAT+TGG | + | chr8_1:62723363-62723382 | Msa1205990:CDS | 40.0% | |
| TGACACTTTGCTTATTGGTC+AGG | + | chr8_1:62723368-62723387 | Msa1205990:CDS | 40.0% | |
| GGTATGCCTTAGTCGAAATT+TGG | + | chr8_1:62723486-62723505 | Msa1205990:intron | 40.0% | |
| TGCTGTCCAAATTTCGACTA+AGG | - | chr8_1:62723495-62723514 | None:intergenic | 40.0% | |
| TCTCTTATGAATAAGACCGG+AGG | + | chr8_1:62723541-62723560 | Msa1205990:intron | 40.0% | |
| CTCTTATGAATAAGACCGGA+GGG | + | chr8_1:62723542-62723561 | Msa1205990:intron | 40.0% | |
| TTGAAAATTGACACTCCCTC+CGG | - | chr8_1:62723560-62723579 | None:intergenic | 40.0% | |
| ! | GTGGGTTGTAGATGTATTGA+AGG | + | chr8_1:62723646-62723665 | Msa1205990:intron | 40.0% |
| ! | GAGTTTGCTTCGAAGAAATG+TGG | + | chr8_1:62723668-62723687 | Msa1205990:CDS | 40.0% |
| TTGAAGGAGAGTGGTAATCA+TGG | + | chr8_1:62723707-62723726 | Msa1205990:CDS | 40.0% | |
| TGAAGGAGAGTGGTAATCAT+GGG | + | chr8_1:62723708-62723727 | Msa1205990:CDS | 40.0% | |
| ! | ACCTTAACTGGACTAGGATT+CGG | - | chr8_1:62723764-62723783 | None:intergenic | 40.0% |
| TATAACGATGCGTTTCAACG+TGG | - | chr8_1:62724143-62724162 | None:intergenic | 40.0% | |
| TCGTTATACGCTACTGAAAC+GGG | + | chr8_1:62724155-62724174 | Msa1205990:intron | 40.0% | |
| ! | TAGCAACCAAAAGGTTTGGT+AGG | - | chr8_1:62724338-62724357 | None:intergenic | 40.0% |
| CCAACATCATAGCAACCAAA+AGG | - | chr8_1:62724347-62724366 | None:intergenic | 40.0% | |
| !! | CCTTTTGGTTGCTATGATGT+TGG | + | chr8_1:62724344-62724363 | Msa1205990:intron | 40.0% |
| ATCCACTGTTACTACCTAAG+AGG | + | chr8_1:62724369-62724388 | Msa1205990:intron | 40.0% | |
| AACCTCTTAGGTAGTAACAG+TGG | - | chr8_1:62724374-62724393 | None:intergenic | 40.0% | |
| CGGTTTCTTGTAAACCTCTT+AGG | - | chr8_1:62724386-62724405 | None:intergenic | 40.0% | |
| GCATCTAGTTGACTATGCAA+CGG | + | chr8_1:62724520-62724539 | Msa1205990:intron | 40.0% | |
| CTAACAATCATAGGACGGTA+TGG | + | chr8_1:62724704-62724723 | Msa1205990:intron | 40.0% | |
| CACACACACCAAGAGATAAA+GGG | - | chr8_1:62724975-62724994 | None:intergenic | 40.0% | |
| !! | ATAAAGGCACTGCATAGGAT+AGG | - | chr8_1:62725005-62725024 | None:intergenic | 40.0% |
| !! | GATGAATAAAGGCACTGCAT+AGG | - | chr8_1:62725010-62725029 | None:intergenic | 40.0% |
| ! | GTTGGAAGACATTTTGTTGG+TGG | + | chr8_1:62725109-62725128 | Msa1205990:CDS | 40.0% |
| !!! | AGACATTTTGTTGGTGGTAG+TGG | + | chr8_1:62725115-62725134 | Msa1205990:CDS | 40.0% |
| GGGGTGAACAGAGAAAAGTA+TGG | - | chr8_1:62722635-62722654 | None:intergenic | 45.0% | |
| ACGCACGCCACAAATCAATA+TGG | - | chr8_1:62722796-62722815 | None:intergenic | 45.0% | |
| TTGGTCTGTTAGTGCTCATG+AGG | + | chr8_1:62723239-62723258 | Msa1205990:CDS | 45.0% | |
| ACAAGAGCAACATAGTGACC+AGG | - | chr8_1:62723279-62723298 | None:intergenic | 45.0% | |
| GGGAAATTGTTGAAGGAGAG+TGG | + | chr8_1:62723698-62723717 | Msa1205990:CDS | 45.0% | |
| TCCGAATCCTAGTCCAGTTA+AGG | + | chr8_1:62723760-62723779 | Msa1205990:CDS | 45.0% | |
| ATCAATCTCGAGTACTCGGA+AGG | - | chr8_1:62724230-62724249 | None:intergenic | 45.0% | |
| ! | TTGCGTCCTACCAAACCTTT+TGG | + | chr8_1:62724329-62724348 | Msa1205990:intron | 45.0% |
| GCACACACACCAAGAGATAA+AGG | - | chr8_1:62724976-62724995 | None:intergenic | 45.0% | |
| CACTGCATAGGATAGGCATT+AGG | - | chr8_1:62724998-62725017 | None:intergenic | 45.0% | |
| TCTGCAATGCTTTGTAAGGC+TGG | - | chr8_1:62725151-62725170 | None:intergenic | 45.0% | |
| AACATGACGTGACGGTAGCT+AGG | - | chr8_1:62722844-62722863 | None:intergenic | 50.0% | |
| ATCCAGGGAGCAAGATTGAG+AGG | + | chr8_1:62723211-62723230 | Msa1205990:CDS | 50.0% | |
| ATCCTCTCAATCTTGCTCCC+TGG | - | chr8_1:62723216-62723235 | None:intergenic | 50.0% | |
| TGTGTTGTGTCAGGTGGAAC+AGG | + | chr8_1:62725039-62725058 | Msa1205990:intron | 50.0% | |
| !! | TTGTTGGTGGTAGTGGCCAA+TGG | + | chr8_1:62725122-62725141 | Msa1205990:CDS | 50.0% |
| !! | TTTGTAAGGCTGGCCTCCAT+TGG | - | chr8_1:62725141-62725160 | None:intergenic | 50.0% |
| ! | TTTGGCATGCAGGGGCACAT+AGG | + | chr8_1:62724417-62724436 | Msa1205990:intron | 55.0% |
| GGAACAGGAGACTCAACGAG+CGG | + | chr8_1:62725054-62725073 | Msa1205990:CDS | 55.0% | |
| ACTCAACGAGCGGAGAGCAA+TGG | + | chr8_1:62725064-62725083 | Msa1205990:CDS | 55.0% | |
| !! | TTGGTGGTAGTGGCCAATGG+AGG | + | chr8_1:62725125-62725144 | Msa1205990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 62722626 | 62725430 | 62722626 | ID=Msa1205990;Name=Msa1205990 |
| chr8_1 | mRNA | 62722626 | 62725430 | 62722626 | ID=Msa1205990-mRNA-1;Parent=Msa1205990;Name=Msa1205990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=539|1|1|1|1|1|3|247|168 |
| chr8_1 | exon | 62722626 | 62723414 | 62722626 | ID=Msa1205990-mRNA-1:exon:20329;Parent=Msa1205990-mRNA-1 |
| chr8_1 | exon | 62723657 | 62723781 | 62723657 | ID=Msa1205990-mRNA-1:exon:20330;Parent=Msa1205990-mRNA-1 |
| chr8_1 | exon | 62725052 | 62725430 | 62725052 | ID=Msa1205990-mRNA-1:exon:20331;Parent=Msa1205990-mRNA-1 |
| chr8_1 | five_prime_UTR | 62722626 | 62723164 | 62722626 | ID=Msa1205990-mRNA-1:five_prime_utr;Parent=Msa1205990-mRNA-1 |
| chr8_1 | CDS | 62723165 | 62723414 | 62723165 | ID=Msa1205990-mRNA-1:cds;Parent=Msa1205990-mRNA-1 |
| chr8_1 | CDS | 62723657 | 62723781 | 62723657 | ID=Msa1205990-mRNA-1:cds;Parent=Msa1205990-mRNA-1 |
| chr8_1 | CDS | 62725052 | 62725183 | 62725052 | ID=Msa1205990-mRNA-1:cds;Parent=Msa1205990-mRNA-1 |
| chr8_1 | three_prime_UTR | 62725184 | 62725430 | 62725184 | ID=Msa1205990-mRNA-1:three_prime_utr;Parent=Msa1205990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
