Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250630 | XP_003628200.1 | 84.076 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 8.69e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250630 | sp|Q9SSK5|MLP43_ARATH | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 6.64e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250630 | G7L7T5 | 84.076 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 4.15e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1228190 | Msa1250630 | 0.800366 | 1.490381e-48 | -8.615850e-47 |
| Msa1242110 | Msa1250630 | 0.951435 | 2.057288e-109 | -8.615850e-47 |
| Msa1250630 | Msa1326700 | 0.974105 | 1.422458e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250630 | MtrunA17_Chr8g0355721 | 84.076 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 7.99e-97 | 276 |
| Msa1250630 | MtrunA17_Chr8g0355661 | 80.255 | 157 | 30 | 1 | 1 | 157 | 1 | 156 | 4.64e-91 | 261 |
| Msa1250630 | MtrunA17_Chr8g0355741 | 76.433 | 157 | 37 | 0 | 1 | 157 | 1 | 157 | 3.77e-89 | 256 |
| Msa1250630 | MtrunA17_Chr8g0355811 | 70.701 | 157 | 45 | 1 | 1 | 157 | 1 | 156 | 2.90e-82 | 239 |
| Msa1250630 | MtrunA17_Chr8g0355781 | 72.368 | 152 | 42 | 0 | 1 | 152 | 1 | 152 | 4.24e-82 | 238 |
| Msa1250630 | MtrunA17_Chr8g0355641 | 69.231 | 156 | 48 | 0 | 1 | 156 | 1 | 156 | 8.10e-80 | 233 |
| Msa1250630 | MtrunA17_Chr8g0355761 | 71.711 | 152 | 43 | 0 | 1 | 152 | 1 | 152 | 1.61e-79 | 232 |
| Msa1250630 | MtrunA17_Chr8g0355821 | 69.032 | 155 | 47 | 1 | 1 | 155 | 1 | 154 | 3.72e-79 | 231 |
| Msa1250630 | MtrunA17_Chr8g0355801 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 1.46e-77 | 227 |
| Msa1250630 | MtrunA17_Chr8g0355791 | 68.790 | 157 | 48 | 1 | 1 | 157 | 1 | 156 | 3.32e-77 | 226 |
| Msa1250630 | MtrunA17_Chr8g0355771 | 66.879 | 157 | 51 | 1 | 1 | 157 | 1 | 156 | 5.79e-75 | 221 |
| Msa1250630 | MtrunA17_Chr1g0160371 | 43.791 | 153 | 83 | 2 | 1 | 151 | 1 | 152 | 4.73e-39 | 129 |
| Msa1250630 | MtrunA17_Chr1g0160381 | 39.869 | 153 | 89 | 2 | 1 | 151 | 5 | 156 | 3.28e-38 | 127 |
| Msa1250630 | MtrunA17_Chr1g0160391 | 37.821 | 156 | 89 | 4 | 1 | 149 | 1 | 155 | 1.30e-27 | 100 |
| Msa1250630 | MtrunA17_Chr8g0339261 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 6.20e-25 | 94.0 |
| Msa1250630 | MtrunA17_Chr1g0160801 | 36.486 | 148 | 85 | 4 | 7 | 152 | 7 | 147 | 1.09e-24 | 92.8 |
| Msa1250630 | MtrunA17_Chr1g0160351 | 45.161 | 93 | 49 | 1 | 61 | 151 | 1 | 93 | 1.23e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250630 | AT5G28010.1 | 32.667 | 150 | 98 | 3 | 3 | 150 | 15 | 163 | 2.08e-23 | 90.5 |
| Msa1250630 | AT5G28010.2 | 32.667 | 150 | 98 | 3 | 3 | 150 | 15 | 163 | 2.08e-23 | 90.5 |
| Msa1250630 | AT1G70890.1 | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 6.75e-23 | 89.0 |
| Msa1250630 | AT1G70840.1 | 31.333 | 150 | 100 | 3 | 3 | 150 | 20 | 168 | 1.02e-20 | 83.6 |
| Msa1250630 | AT1G70830.5 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 1.43e-20 | 83.6 |
| Msa1250630 | AT1G70870.1 | 42.708 | 96 | 54 | 1 | 56 | 151 | 44 | 138 | 1.99e-20 | 82.0 |
| Msa1250630 | AT1G70830.3 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 2.85e-20 | 83.2 |
| Msa1250630 | AT5G28000.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 13 | 161 | 9.34e-20 | 80.9 |
| Msa1250630 | AT1G70830.2 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 9.87e-20 | 82.8 |
| Msa1250630 | AT1G23120.1 | 29.167 | 144 | 97 | 3 | 7 | 150 | 7 | 145 | 1.20e-19 | 80.5 |
| Msa1250630 | AT1G70830.1 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 2.17e-19 | 83.2 |
| Msa1250630 | AT1G70830.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 184 | 332 | 7.20e-18 | 79.0 |
| Msa1250630 | AT1G23120.2 | 29.167 | 144 | 97 | 3 | 7 | 150 | 57 | 195 | 2.62e-19 | 80.9 |
| Msa1250630 | AT1G70850.2 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.15e-18 | 79.7 |
| Msa1250630 | AT1G23130.1 | 28.859 | 149 | 104 | 2 | 3 | 150 | 10 | 157 | 2.14e-18 | 77.4 |
| Msa1250630 | AT1G70850.3 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 2.88e-18 | 80.1 |
| Msa1250630 | AT1G70850.3 | 30.714 | 140 | 94 | 3 | 13 | 150 | 175 | 313 | 9.88e-17 | 75.9 |
| Msa1250630 | AT1G70850.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 2.88e-18 | 80.1 |
| Msa1250630 | AT1G70850.1 | 30.714 | 140 | 94 | 3 | 13 | 150 | 175 | 313 | 9.88e-17 | 75.9 |
| Msa1250630 | AT1G70830.4 | 30.667 | 150 | 101 | 3 | 3 | 150 | 137 | 285 | 2.98e-18 | 79.7 |
| Msa1250630 | AT4G23670.1 | 33.117 | 154 | 98 | 4 | 1 | 152 | 1 | 151 | 4.75e-18 | 76.3 |
| Msa1250630 | AT1G70880.1 | 30.000 | 150 | 102 | 3 | 3 | 150 | 8 | 156 | 4.81e-18 | 76.6 |
| Msa1250630 | AT1G14930.1 | 30.573 | 157 | 106 | 3 | 1 | 156 | 1 | 155 | 9.37e-18 | 75.5 |
| Msa1250630 | AT2G01520.1 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 1.27e-16 | 72.4 |
| Msa1250630 | AT4G23680.1 | 31.373 | 153 | 100 | 4 | 1 | 151 | 1 | 150 | 1.97e-15 | 69.3 |
| Msa1250630 | AT4G14060.1 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 4.46e-15 | 68.6 |
| Msa1250630 | AT1G35260.1 | 25.166 | 151 | 109 | 3 | 2 | 150 | 1 | 149 | 1.17e-14 | 67.4 |
| Msa1250630 | AT2G01530.1 | 29.412 | 153 | 105 | 3 | 1 | 152 | 1 | 151 | 1.37e-14 | 67.4 |
| Msa1250630 | AT1G14940.1 | 28.662 | 157 | 109 | 3 | 1 | 156 | 1 | 155 | 2.00e-14 | 67.0 |
| Msa1250630 | AT1G14950.1 | 28.025 | 157 | 110 | 3 | 1 | 156 | 1 | 155 | 3.60e-13 | 63.5 |
| Msa1250630 | AT1G30990.1 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 6.66e-13 | 62.8 |
| Msa1250630 | AT1G24020.1 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 1.67e-12 | 62.0 |
| Msa1250630 | AT1G24020.2 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 1.67e-12 | 62.0 |
| Msa1250630 | AT3G26460.1 | 28.205 | 156 | 104 | 5 | 1 | 152 | 1 | 152 | 2.84e-11 | 58.5 |
Find 39 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAAGCAATTTCTATTTAA+AGG | 0.149474 | 8_2:-46368611 | Msa1250630:five_prime_UTR |
| TGAGCATTATAGGGTCTTTA+AGG | 0.251134 | 8_2:-46366478 | Msa1250630:CDS |
| GAGATATTGATGAGCATTAT+AGG | 0.261538 | 8_2:-46366488 | Msa1250630:CDS |
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8_2:-46366363 | Msa1250630:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.267652 | 8_2:-46368497 | Msa1250630:CDS |
| AAGGTCATCCTTGAAGTAAT+TGG | 0.283197 | 8_2:-46366459 | Msa1250630:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8_2:+46368388 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8_2:-46366428 | Msa1250630:CDS |
| AGATTGGCATCACTCTGATT+TGG | 0.377978 | 8_2:-46368369 | Msa1250630:CDS |
| CACCCTTACCAATTACTTCA+AGG | 0.403747 | 8_2:+46366451 | None:intergenic |
| TAGGGTTGATATGATGAAAC+TGG | 0.411128 | 8_2:+46368575 | None:intergenic |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8_2:+46366366 | None:intergenic |
| GAAAGAGAAGAAAGAAAACT+AGG | 0.419011 | 8_2:+46368556 | None:intergenic |
| CACCTTCATGAAGTTTGGTA+TGG | 0.456107 | 8_2:+46368393 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8_2:-46366510 | Msa1250630:CDS |
| TTCTAAGAAATGGTGCTCTC+TGG | 0.461766 | 8_2:-46368518 | Msa1250630:exon |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8_2:-46368344 | Msa1250630:intron |
| AAAGAGAAGAAAGAAAACTA+GGG | 0.476000 | 8_2:+46368557 | None:intergenic |
| CATCCTTGAAGTAATTGGTA+AGG | 0.479580 | 8_2:-46366454 | Msa1250630:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8_2:-46368385 | Msa1250630:CDS |
| AATTATTGTGATGTTTGTAA+TGG | 0.494485 | 8_2:-46366184 | Msa1250630:three_prime_UTR |
| GAGTGATATATATGTTGTAA+TGG | 0.519182 | 8_2:-46366272 | Msa1250630:three_prime_UTR |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8_2:-46366373 | Msa1250630:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8_2:-46366381 | Msa1250630:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8_2:+46366369 | None:intergenic |
| GTTGTAATGGCTTAATGCGT+GGG | 0.550938 | 8_2:-46366259 | Msa1250630:three_prime_UTR |
| AGATATTGATGAGCATTATA+GGG | 0.551405 | 8_2:-46366487 | Msa1250630:CDS |
| GAAGTAATTGGTAAGGGTGA+TGG | 0.551832 | 8_2:-46366447 | Msa1250630:CDS |
| TAATGGCTTAATGCGTGGGT+TGG | 0.552964 | 8_2:-46366255 | Msa1250630:three_prime_UTR |
| ACTCTGATTTGGTTAAACAC+TGG | 0.575483 | 8_2:-46368358 | Msa1250630:CDS |
| TGTTGTAATGGCTTAATGCG+TGG | 0.596735 | 8_2:-46366260 | Msa1250630:three_prime_UTR |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 8_2:-46366324 | Msa1250630:CDS |
| CACCATACCAAACTTCATGA+AGG | 0.601337 | 8_2:-46368395 | Msa1250630:CDS |
| ATCCTTGAAGTAATTGGTAA+GGG | 0.604058 | 8_2:-46366453 | Msa1250630:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8_2:-46366583 | Msa1250630:intron |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8_2:+46366370 | None:intergenic |
| TAGATTGTAGAACTTATCAG+AGG | 0.623153 | 8_2:+46368463 | None:intergenic |
| AGATTGTAGAACTTATCAGA+GGG | 0.653447 | 8_2:+46368464 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8_2:-46366400 | Msa1250630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATCAATTATTTATTAC+TGG | + | chr8_2:46367590-46367609 | None:intergenic | 10.0% |
| !!! | TGCTTTTAATATTTTTTTTA+TGG | + | chr8_2:46367793-46367812 | None:intergenic | 10.0% |
| !!! | ACAATACATATTTAATTTAT+AGG | + | chr8_2:46368024-46368043 | None:intergenic | 10.0% |
| !!! | AGTTTATTTGTTAAAAAAAT+AGG | - | chr8_2:46368124-46368143 | Msa1250630:intron | 10.0% |
| !!! | TTATTGTGATTTTTTTTTTA+AGG | - | chr8_2:46368593-46368612 | Msa1250630:five_prime_UTR | 10.0% |
| !! | ATGATTACAAACTATTAAAA+TGG | + | chr8_2:46367130-46367149 | None:intergenic | 15.0% |
| !!! | AATTTTATTTATGTTACACT+GGG | + | chr8_2:46367533-46367552 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTATGTTACAC+TGG | + | chr8_2:46367534-46367553 | None:intergenic | 15.0% |
| !! | ATAAATAAAATTAACAACAC+TGG | - | chr8_2:46367541-46367560 | Msa1250630:intron | 15.0% |
| !! | TGTAAGAATTATGAATTATT+TGG | - | chr8_2:46367956-46367975 | Msa1250630:intron | 15.0% |
| !! | GTAAGAATTATGAATTATTT+GGG | - | chr8_2:46367957-46367976 | Msa1250630:intron | 15.0% |
| !! | AATCATATAAAGAATATATG+TGG | - | chr8_2:46367994-46368013 | Msa1250630:intron | 15.0% |
| !! | TCATTAGAAAAAATATTCAT+TGG | - | chr8_2:46368053-46368072 | Msa1250630:intron | 15.0% |
| !!! | AATATAGTAGTTTTCTTTTT+AGG | - | chr8_2:46368088-46368107 | Msa1250630:intron | 15.0% |
| !!! | ATATAGTAGTTTTCTTTTTA+GGG | - | chr8_2:46368089-46368108 | Msa1250630:intron | 15.0% |
| !! | GTAAAGCAATTTCTATTTAA+AGG | - | chr8_2:46366189-46366208 | Msa1250630:three_prime_UTR | 20.0% |
| !!! | TTTGTTTTACTTCTAAGAAA+TGG | - | chr8_2:46366272-46366291 | Msa1250630:three_prime_UTR | 20.0% |
| !! | AATCATATAAGATGATGATT+TGG | + | chr8_2:46366518-46366537 | None:intergenic | 20.0% |
| !! | CAATCTTTATAGAATTCATT+TGG | + | chr8_2:46366627-46366646 | None:intergenic | 20.0% |
| !! | CAAATGAATTCTATAAAGAT+TGG | - | chr8_2:46366625-46366644 | Msa1250630:intron | 20.0% |
| !! | TAGGTCTTCTATAAAATTAT+GGG | + | chr8_2:46366835-46366854 | None:intergenic | 20.0% |
| !! | TTAGGTCTTCTATAAAATTA+TGG | + | chr8_2:46366836-46366855 | None:intergenic | 20.0% |
| !!! | TTAAAGAGATTTGATTTTGT+AGG | - | chr8_2:46367069-46367088 | Msa1250630:intron | 20.0% |
| !! | TGTACACATCAATAAAAAAT+AGG | - | chr8_2:46367174-46367193 | Msa1250630:intron | 20.0% |
| !! | AATAATCCTCTATAGATATA+AGG | - | chr8_2:46367368-46367387 | Msa1250630:intron | 20.0% |
| !! | TCATAAACTATGTCAATAAT+TGG | - | chr8_2:46367504-46367523 | Msa1250630:intron | 20.0% |
| !!! | TAGTTTTTTTTTTTTTGTGG+TGG | + | chr8_2:46367722-46367741 | None:intergenic | 20.0% |
| !!! | GTGTAGTTTTTTTTTTTTTG+TGG | + | chr8_2:46367725-46367744 | None:intergenic | 20.0% |
| !! | AATTATTGTGATGTTTGTAA+TGG | - | chr8_2:46368616-46368635 | Msa1250630:five_prime_UTR | 20.0% |
| ! | AAAGAGAAGAAAGAAAACTA+GGG | + | chr8_2:46366246-46366265 | None:intergenic | 25.0% |
| ! | CTATACTTCTAACAGAAAAA+AGG | - | chr8_2:46366581-46366600 | Msa1250630:intron | 25.0% |
| ! | TTAATGTTACTGTAGTTGTT+AGG | + | chr8_2:46366854-46366873 | None:intergenic | 25.0% |
| !! | CTTTTGATCTAAAAGATACA+AGG | - | chr8_2:46366902-46366921 | Msa1250630:intron | 25.0% |
| ! | AAAATAGGAAAATACTTGTG+TGG | - | chr8_2:46367189-46367208 | Msa1250630:intron | 25.0% |
| ! | AAAATGTCGAAAATAATCCT+AGG | - | chr8_2:46367435-46367454 | Msa1250630:intron | 25.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | - | chr8_2:46368287-46368306 | Msa1250630:intron | 25.0% |
| ! | AGATATTGATGAGCATTATA+GGG | - | chr8_2:46368313-46368332 | Msa1250630:intron | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | - | chr8_2:46368400-46368419 | Msa1250630:CDS | 25.0% |
| ! | GAGTGATATATATGTTGTAA+TGG | - | chr8_2:46368528-46368547 | Msa1250630:exon | 25.0% |
| GAAAGAGAAGAAAGAAAACT+AGG | + | chr8_2:46366247-46366266 | None:intergenic | 30.0% | |
| AGATTGTAGAACTTATCAGA+GGG | + | chr8_2:46366339-46366358 | None:intergenic | 30.0% | |
| TAGATTGTAGAACTTATCAG+AGG | + | chr8_2:46366340-46366359 | None:intergenic | 30.0% | |
| !! | TTTGTTGAATGTTAGTTTGC+GGG | + | chr8_2:46367037-46367056 | None:intergenic | 30.0% |
| ! | GTTTGTTGAATGTTAGTTTG+CGG | + | chr8_2:46367038-46367057 | None:intergenic | 30.0% |
| !! | AGAGATTTGATTTTGTAGGA+AGG | - | chr8_2:46367073-46367092 | Msa1250630:intron | 30.0% |
| CGACATAATAACATTTGCAA+AGG | - | chr8_2:46367096-46367115 | Msa1250630:intron | 30.0% | |
| !! | TTTTTAGAGAAAGACTTGTG+TGG | + | chr8_2:46367349-46367368 | None:intergenic | 30.0% |
| AGTCAACCTTATATCTATAG+AGG | + | chr8_2:46367377-46367396 | None:intergenic | 30.0% | |
| !! | ATAGATATAAGGTTGACTTG+TGG | - | chr8_2:46367379-46367398 | Msa1250630:intron | 30.0% |
| CGAAAATAATCCTAGGTATA+AGG | - | chr8_2:46367442-46367461 | Msa1250630:intron | 30.0% | |
| !! | AAAATTAACAACACTGGCTT+TGG | - | chr8_2:46367547-46367566 | Msa1250630:intron | 30.0% |
| CTTCGTAAACTTATCTAAGT+TGG | - | chr8_2:46367650-46367669 | Msa1250630:intron | 30.0% | |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr8_2:46367718-46367737 | None:intergenic | 30.0% |
| ! | TAGTGATATTTTGCCATTGT+CGG | + | chr8_2:46367750-46367769 | None:intergenic | 30.0% |
| GAGATATTGATGAGCATTAT+AGG | - | chr8_2:46368312-46368331 | Msa1250630:intron | 30.0% | |
| ATCCTTGAAGTAATTGGTAA+GGG | - | chr8_2:46368347-46368366 | Msa1250630:CDS | 30.0% | |
| !! | TAGGGTTGATATGATGAAAC+TGG | + | chr8_2:46366228-46366247 | None:intergenic | 35.0% |
| ATCTTCACCTTCATGAAGTT+TGG | + | chr8_2:46366415-46366434 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | chr8_2:46366415-46366434 | Msa1250630:CDS | 35.0% | |
| !! | ACTCTGATTTGGTTAAACAC+TGG | - | chr8_2:46366442-46366461 | Msa1250630:CDS | 35.0% |
| AAACACTGGACTTATGTCAT+AGG | - | chr8_2:46366456-46366475 | Msa1250630:CDS | 35.0% | |
| !! | TGATGATTTGGTTATCGATC+AGG | + | chr8_2:46366506-46366525 | None:intergenic | 35.0% |
| GATACATTGAGACTAACCTA+AGG | - | chr8_2:46366647-46366666 | Msa1250630:intron | 35.0% | |
| AAAGAGAAAGAGGTGATTGA+AGG | + | chr8_2:46366948-46366967 | None:intergenic | 35.0% | |
| AAAAGAGTCGAAAGAGAAAG+AGG | + | chr8_2:46366958-46366977 | None:intergenic | 35.0% | |
| ! | TCTCTTTCGACTCTTTTGAA+CGG | - | chr8_2:46366961-46366980 | Msa1250630:intron | 35.0% |
| !! | TTTGGCATGAGATTTTCAAG+TGG | + | chr8_2:46367010-46367029 | None:intergenic | 35.0% |
| CTTGAAAATCTCATGCCAAA+TGG | - | chr8_2:46367010-46367029 | Msa1250630:intron | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr8_2:46367261-46367280 | Msa1250630:intron | 35.0% | |
| ACAAGTCAAACCTTATACCT+AGG | + | chr8_2:46367455-46367474 | None:intergenic | 35.0% | |
| !! | TAGGTATAAGGTTTGACTTG+TGG | - | chr8_2:46367454-46367473 | Msa1250630:intron | 35.0% |
| !! | TATAAGGTTTGACTTGTGGT+TGG | - | chr8_2:46367458-46367477 | Msa1250630:intron | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr8_2:46367717-46367736 | None:intergenic | 35.0% |
| AAAAACTACACAACCGACAA+TGG | - | chr8_2:46367734-46367753 | Msa1250630:intron | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | + | chr8_2:46368210-46368229 | None:intergenic | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | + | chr8_2:46368215-46368234 | None:intergenic | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | - | chr8_2:46368212-46368231 | Msa1250630:intron | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | - | chr8_2:46368217-46368236 | Msa1250630:intron | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | - | chr8_2:46368290-46368309 | Msa1250630:intron | 35.0% | |
| TGAGCATTATAGGGTCTTTA+AGG | - | chr8_2:46368322-46368341 | Msa1250630:intron | 35.0% | |
| AAGGTCATCCTTGAAGTAAT+TGG | - | chr8_2:46368341-46368360 | Msa1250630:intron | 35.0% | |
| CATCCTTGAAGTAATTGGTA+AGG | - | chr8_2:46368346-46368365 | Msa1250630:CDS | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | + | chr8_2:46368437-46368456 | None:intergenic | 35.0% | |
| ! | AATGGCTACATGGAACATTT+TGG | - | chr8_2:46368437-46368456 | Msa1250630:CDS | 35.0% |
| ! | TTCTAAGAAATGGTGCTCTC+TGG | - | chr8_2:46366282-46366301 | Msa1250630:three_prime_UTR | 40.0% |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | - | chr8_2:46366303-46366322 | Msa1250630:exon | 40.0% |
| CACCATACCAAACTTCATGA+AGG | - | chr8_2:46366405-46366424 | Msa1250630:CDS | 40.0% | |
| CACCTTCATGAAGTTTGGTA+TGG | + | chr8_2:46366410-46366429 | None:intergenic | 40.0% | |
| AGATTGGCATCACTCTGATT+TGG | - | chr8_2:46366431-46366450 | Msa1250630:CDS | 40.0% | |
| ATACTTCAGTGCCATAGCAA+TGG | + | chr8_2:46366809-46366828 | None:intergenic | 40.0% | |
| AGAAAGAGGTGATTGAAGGA+GGG | + | chr8_2:46366944-46366963 | None:intergenic | 40.0% | |
| !!! | AGATTTTCAAGTGGAAGGCT+GGG | + | chr8_2:46367001-46367020 | None:intergenic | 40.0% |
| !!! | GCATGAGATTTTCAAGTGGA+AGG | + | chr8_2:46367006-46367025 | None:intergenic | 40.0% |
| GAAAATACTTGTGTGGACCA+AGG | - | chr8_2:46367196-46367215 | Msa1250630:intron | 40.0% | |
| TTTGGTTGTGACCACACAAT+GGG | + | chr8_2:46367229-46367248 | None:intergenic | 40.0% | |
| TGTGGTCACAACCAAAGAAA+TGG | - | chr8_2:46367233-46367252 | Msa1250630:intron | 40.0% | |
| GTGGTCACAACCAAAGAAAT+GGG | - | chr8_2:46367234-46367253 | Msa1250630:intron | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | + | chr8_2:46367247-46367266 | None:intergenic | 40.0% | |
| CATTATACATGCAACGTCCA+GGG | - | chr8_2:46367684-46367703 | Msa1250630:intron | 40.0% | |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | chr8_2:46367716-46367735 | None:intergenic | 40.0% |
| GTTGTGAATTATGATGGCAC+GGG | + | chr8_2:46368209-46368228 | None:intergenic | 40.0% | |
| CACCCTTACCAATTACTTCA+AGG | + | chr8_2:46368352-46368371 | None:intergenic | 40.0% | |
| GAAGTAATTGGTAAGGGTGA+TGG | - | chr8_2:46368353-46368372 | Msa1250630:CDS | 40.0% | |
| GTTGATGCTCATCTTGTCAA+AGG | - | chr8_2:46368476-46368495 | Msa1250630:CDS | 40.0% | |
| TGTTGTAATGGCTTAATGCG+TGG | - | chr8_2:46368540-46368559 | Msa1250630:five_prime_UTR | 40.0% | |
| GTTGTAATGGCTTAATGCGT+GGG | - | chr8_2:46368541-46368560 | Msa1250630:five_prime_UTR | 40.0% | |
| CTAACCTAAGGACTCCACTT+TGG | - | chr8_2:46366659-46366678 | Msa1250630:intron | 45.0% | |
| !! | CTCCACTTTGGTGCCATTAA+TGG | - | chr8_2:46366671-46366690 | Msa1250630:intron | 45.0% |
| TGCCATTAATGGCACCAAAG+TGG | + | chr8_2:46366676-46366695 | None:intergenic | 45.0% | |
| !! | ATGCAATGGTATGGTGCCAT+TGG | + | chr8_2:46366699-46366718 | None:intergenic | 45.0% |
| TGATGTGTGTGGATGTGTGT+GGG | + | chr8_2:46366753-46366772 | None:intergenic | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | + | chr8_2:46366754-46366773 | None:intergenic | 45.0% | |
| CACACATCCACACACATCAA+CGG | - | chr8_2:46366754-46366773 | Msa1250630:intron | 45.0% | |
| !! | GATTGGTTCTATGGCACCAA+TGG | - | chr8_2:46366781-46366800 | Msa1250630:intron | 45.0% |
| GAGAAAGAGGTGATTGAAGG+AGG | + | chr8_2:46366945-46366964 | None:intergenic | 45.0% | |
| !!! | GAGATTTTCAAGTGGAAGGC+TGG | + | chr8_2:46367002-46367021 | None:intergenic | 45.0% |
| !! | TGTTAGTTTGCGGGACCATT+TGG | + | chr8_2:46367028-46367047 | None:intergenic | 45.0% |
| TTGGTTGTGACCACACAATG+GGG | + | chr8_2:46367228-46367247 | None:intergenic | 45.0% | |
| CTTTGGTTGTGACCACACAA+TGG | + | chr8_2:46367230-46367249 | None:intergenic | 45.0% | |
| TGTGACCAAACCCAATTGTG+TGG | - | chr8_2:46367316-46367335 | Msa1250630:intron | 45.0% | |
| TGGATCAGGACCACACAATT+GGG | + | chr8_2:46367329-46367348 | None:intergenic | 45.0% | |
| GAGAAAGACTTGTGTGGATC+AGG | + | chr8_2:46367343-46367362 | None:intergenic | 45.0% | |
| GCATTATACATGCAACGTCC+AGG | - | chr8_2:46367683-46367702 | Msa1250630:intron | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | - | chr8_2:46368419-46368438 | Msa1250630:CDS | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | + | chr8_2:46368433-46368452 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | + | chr8_2:46368434-46368453 | None:intergenic | 45.0% | |
| TAATGGCTTAATGCGTGGGT+TGG | - | chr8_2:46368545-46368564 | Msa1250630:five_prime_UTR | 45.0% | |
| !! | GGTGCCATTAATGGCACCAA+TGG | - | chr8_2:46366680-46366699 | Msa1250630:intron | 50.0% |
| !! | GGTGCCATTGGTGCCATTAA+TGG | + | chr8_2:46366687-46366706 | None:intergenic | 50.0% |
| ! | GTGGTGGAGATGCAATGGTA+TGG | + | chr8_2:46366708-46366727 | None:intergenic | 50.0% |
| ! | TGTGTGTGGTGGAGATGCAA+TGG | + | chr8_2:46366713-46366732 | None:intergenic | 50.0% |
| TGTGTGATGTGTGTGTGTGG+TGG | + | chr8_2:46366724-46366743 | None:intergenic | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | + | chr8_2:46366727-46366746 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | + | chr8_2:46366752-46366771 | None:intergenic | 50.0% | |
| !! | AACGGCCAGGATTGGTTCTA+TGG | - | chr8_2:46366772-46366791 | Msa1250630:intron | 50.0% |
| !! | TGGTGCCATAGAACCAATCC+TGG | + | chr8_2:46366780-46366799 | None:intergenic | 50.0% |
| CACCAATGGCACCATTGCTA+TGG | - | chr8_2:46366795-46366814 | Msa1250630:intron | 50.0% | |
| !! | TGCCATAGCAATGGTGCCAT+TGG | + | chr8_2:46366800-46366819 | None:intergenic | 50.0% |
| ! | ACACAATGGGGTTTGGTCCT+TGG | + | chr8_2:46367216-46367235 | None:intergenic | 50.0% |
| AAGGACCAAACCCCATTGTG+TGG | - | chr8_2:46367215-46367234 | Msa1250630:intron | 50.0% | |
| TGTGACCACACAATGGGGTT+TGG | + | chr8_2:46367223-46367242 | None:intergenic | 50.0% | |
| CAGGACCACACAATTGGGTT+TGG | + | chr8_2:46367324-46367343 | None:intergenic | 50.0% | |
| GTGGATCAGGACCACACAAT+TGG | + | chr8_2:46367330-46367349 | None:intergenic | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | - | chr8_2:46368372-46368391 | Msa1250630:CDS | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | - | chr8_2:46368427-46368446 | Msa1250630:CDS | 50.0% | |
| GGCACCAAAGTGGAGTCCTT+AGG | + | chr8_2:46366666-46366685 | None:intergenic | 55.0% | |
| ATCCACACACATCAACGGCC+AGG | - | chr8_2:46366759-46366778 | Msa1250630:intron | 55.0% | |
| ATCCTGGCCGTTGATGTGTG+TGG | + | chr8_2:46366764-46366783 | None:intergenic | 55.0% | |
| CACACATCAACGGCCAGGAT+TGG | - | chr8_2:46366764-46366783 | Msa1250630:intron | 55.0% | |
| AACGTCCAGGGTTCAAACCC+CGG | - | chr8_2:46367696-46367715 | Msa1250630:intron | 55.0% | |
| GGTGGCCGGGGTTTGAACCC+TGG | + | chr8_2:46367704-46367723 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 46366178 | 46368644 | 46366178 | ID=Msa1250630;Name=Msa1250630 |
| chr8_2 | mRNA | 46366178 | 46368644 | 46366178 | ID=Msa1250630-mRNA-1;Parent=Msa1250630;Name=Msa1250630-mRNA-1;_AED=0.30;_eAED=0.30;_QI=113|1|1|1|1|1|2|127|157 |
| chr8_2 | exon | 46366178 | 46366591 | 46366178 | ID=Msa1250630-mRNA-1:exon:13956;Parent=Msa1250630-mRNA-1 |
| chr8_2 | exon | 46368345 | 46368644 | 46368345 | ID=Msa1250630-mRNA-1:exon:13955;Parent=Msa1250630-mRNA-1 |
| chr8_2 | five_prime_UTR | 46368532 | 46368644 | 46368532 | ID=Msa1250630-mRNA-1:five_prime_utr;Parent=Msa1250630-mRNA-1 |
| chr8_2 | CDS | 46368345 | 46368531 | 46368345 | ID=Msa1250630-mRNA-1:cds;Parent=Msa1250630-mRNA-1 |
| chr8_2 | CDS | 46366305 | 46366591 | 46366305 | ID=Msa1250630-mRNA-1:cds;Parent=Msa1250630-mRNA-1 |
| chr8_2 | three_prime_UTR | 46366178 | 46366304 | 46366178 | ID=Msa1250630-mRNA-1:three_prime_utr;Parent=Msa1250630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
