Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326700 | XP_003628200.1 | 84.076 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 8.69e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326700 | sp|Q9SSK5|MLP43_ARATH | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 6.64e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326700 | G7L7T5 | 84.076 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 4.15e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1242110 | Msa1326700 | 0.953007 | 7.046042e-111 | -8.615850e-47 |
| Msa1250630 | Msa1326700 | 0.974105 | 1.422458e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326700 | MtrunA17_Chr8g0355721 | 84.076 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 7.99e-97 | 276 |
| Msa1326700 | MtrunA17_Chr8g0355661 | 80.255 | 157 | 30 | 1 | 1 | 157 | 1 | 156 | 4.64e-91 | 261 |
| Msa1326700 | MtrunA17_Chr8g0355741 | 76.433 | 157 | 37 | 0 | 1 | 157 | 1 | 157 | 3.77e-89 | 256 |
| Msa1326700 | MtrunA17_Chr8g0355811 | 70.701 | 157 | 45 | 1 | 1 | 157 | 1 | 156 | 2.90e-82 | 239 |
| Msa1326700 | MtrunA17_Chr8g0355781 | 72.368 | 152 | 42 | 0 | 1 | 152 | 1 | 152 | 4.24e-82 | 238 |
| Msa1326700 | MtrunA17_Chr8g0355641 | 69.231 | 156 | 48 | 0 | 1 | 156 | 1 | 156 | 8.10e-80 | 233 |
| Msa1326700 | MtrunA17_Chr8g0355761 | 71.711 | 152 | 43 | 0 | 1 | 152 | 1 | 152 | 1.61e-79 | 232 |
| Msa1326700 | MtrunA17_Chr8g0355821 | 69.032 | 155 | 47 | 1 | 1 | 155 | 1 | 154 | 3.72e-79 | 231 |
| Msa1326700 | MtrunA17_Chr8g0355801 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 1.46e-77 | 227 |
| Msa1326700 | MtrunA17_Chr8g0355791 | 68.790 | 157 | 48 | 1 | 1 | 157 | 1 | 156 | 3.32e-77 | 226 |
| Msa1326700 | MtrunA17_Chr8g0355771 | 66.879 | 157 | 51 | 1 | 1 | 157 | 1 | 156 | 5.79e-75 | 221 |
| Msa1326700 | MtrunA17_Chr1g0160371 | 43.791 | 153 | 83 | 2 | 1 | 151 | 1 | 152 | 4.73e-39 | 129 |
| Msa1326700 | MtrunA17_Chr1g0160381 | 39.869 | 153 | 89 | 2 | 1 | 151 | 5 | 156 | 3.28e-38 | 127 |
| Msa1326700 | MtrunA17_Chr1g0160391 | 37.821 | 156 | 89 | 4 | 1 | 149 | 1 | 155 | 1.30e-27 | 100 |
| Msa1326700 | MtrunA17_Chr8g0339261 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 6.20e-25 | 94.0 |
| Msa1326700 | MtrunA17_Chr1g0160801 | 36.486 | 148 | 85 | 4 | 7 | 152 | 7 | 147 | 1.09e-24 | 92.8 |
| Msa1326700 | MtrunA17_Chr1g0160351 | 45.161 | 93 | 49 | 1 | 61 | 151 | 1 | 93 | 1.23e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326700 | AT5G28010.1 | 32.667 | 150 | 98 | 3 | 3 | 150 | 15 | 163 | 2.08e-23 | 90.5 |
| Msa1326700 | AT5G28010.2 | 32.667 | 150 | 98 | 3 | 3 | 150 | 15 | 163 | 2.08e-23 | 90.5 |
| Msa1326700 | AT1G70890.1 | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 6.75e-23 | 89.0 |
| Msa1326700 | AT1G70840.1 | 31.333 | 150 | 100 | 3 | 3 | 150 | 20 | 168 | 1.02e-20 | 83.6 |
| Msa1326700 | AT1G70830.5 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 1.43e-20 | 83.6 |
| Msa1326700 | AT1G70870.1 | 42.708 | 96 | 54 | 1 | 56 | 151 | 44 | 138 | 1.99e-20 | 82.0 |
| Msa1326700 | AT1G70830.3 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 2.85e-20 | 83.2 |
| Msa1326700 | AT5G28000.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 13 | 161 | 9.34e-20 | 80.9 |
| Msa1326700 | AT1G70830.2 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 9.87e-20 | 82.8 |
| Msa1326700 | AT1G23120.1 | 29.167 | 144 | 97 | 3 | 7 | 150 | 7 | 145 | 1.20e-19 | 80.5 |
| Msa1326700 | AT1G70830.1 | 32.000 | 150 | 99 | 3 | 3 | 150 | 22 | 170 | 2.17e-19 | 83.2 |
| Msa1326700 | AT1G70830.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 184 | 332 | 7.20e-18 | 79.0 |
| Msa1326700 | AT1G23120.2 | 29.167 | 144 | 97 | 3 | 7 | 150 | 57 | 195 | 2.62e-19 | 80.9 |
| Msa1326700 | AT1G70850.2 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.15e-18 | 79.7 |
| Msa1326700 | AT1G23130.1 | 28.859 | 149 | 104 | 2 | 3 | 150 | 10 | 157 | 2.14e-18 | 77.4 |
| Msa1326700 | AT1G70850.3 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 2.88e-18 | 80.1 |
| Msa1326700 | AT1G70850.3 | 30.714 | 140 | 94 | 3 | 13 | 150 | 175 | 313 | 9.88e-17 | 75.9 |
| Msa1326700 | AT1G70850.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 2.88e-18 | 80.1 |
| Msa1326700 | AT1G70850.1 | 30.714 | 140 | 94 | 3 | 13 | 150 | 175 | 313 | 9.88e-17 | 75.9 |
| Msa1326700 | AT1G70830.4 | 30.667 | 150 | 101 | 3 | 3 | 150 | 137 | 285 | 2.98e-18 | 79.7 |
| Msa1326700 | AT4G23670.1 | 33.117 | 154 | 98 | 4 | 1 | 152 | 1 | 151 | 4.75e-18 | 76.3 |
| Msa1326700 | AT1G70880.1 | 30.000 | 150 | 102 | 3 | 3 | 150 | 8 | 156 | 4.81e-18 | 76.6 |
| Msa1326700 | AT1G14930.1 | 30.573 | 157 | 106 | 3 | 1 | 156 | 1 | 155 | 9.37e-18 | 75.5 |
| Msa1326700 | AT2G01520.1 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 1.27e-16 | 72.4 |
| Msa1326700 | AT4G23680.1 | 31.373 | 153 | 100 | 4 | 1 | 151 | 1 | 150 | 1.97e-15 | 69.3 |
| Msa1326700 | AT4G14060.1 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 4.46e-15 | 68.6 |
| Msa1326700 | AT1G35260.1 | 25.166 | 151 | 109 | 3 | 2 | 150 | 1 | 149 | 1.17e-14 | 67.4 |
| Msa1326700 | AT2G01530.1 | 29.412 | 153 | 105 | 3 | 1 | 152 | 1 | 151 | 1.37e-14 | 67.4 |
| Msa1326700 | AT1G14940.1 | 28.662 | 157 | 109 | 3 | 1 | 156 | 1 | 155 | 2.00e-14 | 67.0 |
| Msa1326700 | AT1G14950.1 | 28.025 | 157 | 110 | 3 | 1 | 156 | 1 | 155 | 3.60e-13 | 63.5 |
| Msa1326700 | AT1G30990.1 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 6.66e-13 | 62.8 |
| Msa1326700 | AT1G24020.1 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 1.67e-12 | 62.0 |
| Msa1326700 | AT1G24020.2 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 1.67e-12 | 62.0 |
| Msa1326700 | AT3G26460.1 | 28.205 | 156 | 104 | 5 | 1 | 152 | 1 | 152 | 2.84e-11 | 58.5 |
Find 39 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAAGCAATTTCTATTTAA+AGG | 0.149474 | 8_4:-41263570 | Msa1326700:five_prime_UTR |
| TGAGCATTATAGGGTCTTTA+AGG | 0.251134 | 8_4:-41261436 | Msa1326700:CDS |
| GAGATATTGATGAGCATTAT+AGG | 0.261538 | 8_4:-41261446 | Msa1326700:CDS |
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8_4:-41261321 | Msa1326700:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.267652 | 8_4:-41263456 | Msa1326700:CDS |
| AAGGTCATCCTTGAAGTAAT+TGG | 0.283197 | 8_4:-41261417 | Msa1326700:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8_4:+41263347 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8_4:-41261386 | Msa1326700:CDS |
| AGATTGGCATCACTCTGATT+TGG | 0.377978 | 8_4:-41263328 | Msa1326700:CDS |
| CACCCTTACCAATTACTTCA+AGG | 0.403747 | 8_4:+41261409 | None:intergenic |
| TAGGGTTGATATGATGAAAC+TGG | 0.411128 | 8_4:+41263534 | None:intergenic |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8_4:+41261324 | None:intergenic |
| GAAAGAGAAGAAAGAAAACT+AGG | 0.419011 | 8_4:+41263515 | None:intergenic |
| CACCTTCATGAAGTTTGGTA+TGG | 0.456107 | 8_4:+41263352 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8_4:-41261468 | Msa1326700:CDS |
| TTCTAAGAAATGGTGCTCTC+TGG | 0.461766 | 8_4:-41263477 | Msa1326700:exon |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8_4:-41263303 | Msa1326700:intron |
| AAAGAGAAGAAAGAAAACTA+GGG | 0.476000 | 8_4:+41263516 | None:intergenic |
| CATCCTTGAAGTAATTGGTA+AGG | 0.479580 | 8_4:-41261412 | Msa1326700:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8_4:-41263344 | Msa1326700:CDS |
| AATTATTGTGATGTTTGTAA+TGG | 0.494485 | 8_4:-41261141 | Msa1326700:three_prime_UTR |
| GAGTGATATATATGTTGTAA+TGG | 0.519182 | 8_4:-41261230 | Msa1326700:three_prime_UTR |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8_4:-41261331 | Msa1326700:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8_4:-41261339 | Msa1326700:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8_4:+41261327 | None:intergenic |
| GTTGTAATGGCTTAATGCGT+GGG | 0.550938 | 8_4:-41261217 | Msa1326700:three_prime_UTR |
| AGATATTGATGAGCATTATA+GGG | 0.551405 | 8_4:-41261445 | Msa1326700:CDS |
| GAAGTAATTGGTAAGGGTGA+TGG | 0.551832 | 8_4:-41261405 | Msa1326700:CDS |
| TAATGGCTTAATGCGTGGGT+TGG | 0.552964 | 8_4:-41261213 | Msa1326700:three_prime_UTR |
| ACTCTGATTTGGTTAAACAC+TGG | 0.575483 | 8_4:-41263317 | Msa1326700:CDS |
| TGTTGTAATGGCTTAATGCG+TGG | 0.596735 | 8_4:-41261218 | Msa1326700:three_prime_UTR |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 8_4:-41261282 | Msa1326700:CDS |
| CACCATACCAAACTTCATGA+AGG | 0.601337 | 8_4:-41263354 | Msa1326700:CDS |
| ATCCTTGAAGTAATTGGTAA+GGG | 0.604058 | 8_4:-41261411 | Msa1326700:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8_4:-41261541 | Msa1326700:intron |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8_4:+41261328 | None:intergenic |
| TAGATTGTAGAACTTATCAG+AGG | 0.623153 | 8_4:+41263422 | None:intergenic |
| AGATTGTAGAACTTATCAGA+GGG | 0.653447 | 8_4:+41263423 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8_4:-41261358 | Msa1326700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATCAATTATTTATTAC+TGG | + | chr8_4:41262547-41262566 | None:intergenic | 10.0% |
| !!! | TGCTTTTAATATTTTTTTTA+TGG | + | chr8_4:41262751-41262770 | None:intergenic | 10.0% |
| !!! | ACAATACATATTTAATTTAT+AGG | + | chr8_4:41262982-41263001 | None:intergenic | 10.0% |
| !!! | AGTTTATTTGTTAAAAAAAT+AGG | - | chr8_4:41263082-41263101 | Msa1326700:intron | 10.0% |
| !!! | TATTGTGATTTTTTTTTTTA+AGG | - | chr8_4:41263552-41263571 | Msa1326700:five_prime_UTR | 10.0% |
| !! | ATGATTACAAACTATTAAAA+TGG | + | chr8_4:41262087-41262106 | None:intergenic | 15.0% |
| !!! | AATTTTATTTATGTTACACT+GGG | + | chr8_4:41262490-41262509 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTATGTTACAC+TGG | + | chr8_4:41262491-41262510 | None:intergenic | 15.0% |
| !! | ATAAATAAAATTAACAACAC+TGG | - | chr8_4:41262498-41262517 | Msa1326700:intron | 15.0% |
| !!! | TGTAGTTTTTTTTTTTTTTG+TGG | + | chr8_4:41262682-41262701 | None:intergenic | 15.0% |
| !! | TGTAAGAATTATGAATTATT+TGG | - | chr8_4:41262914-41262933 | Msa1326700:intron | 15.0% |
| !! | GTAAGAATTATGAATTATTT+GGG | - | chr8_4:41262915-41262934 | Msa1326700:intron | 15.0% |
| !! | AATCATATAAAGAATATATG+TGG | - | chr8_4:41262952-41262971 | Msa1326700:intron | 15.0% |
| !! | TCATTAGAAAAAATATTCAT+TGG | - | chr8_4:41263011-41263030 | Msa1326700:intron | 15.0% |
| !!! | AATATAGTAGTTTTCTTTTT+AGG | - | chr8_4:41263046-41263065 | Msa1326700:intron | 15.0% |
| !!! | ATATAGTAGTTTTCTTTTTA+GGG | - | chr8_4:41263047-41263066 | Msa1326700:intron | 15.0% |
| !! | GTAAAGCAATTTCTATTTAA+AGG | - | chr8_4:41261146-41261165 | Msa1326700:three_prime_UTR | 20.0% |
| !!! | TTTGTTTTACTTCTAAGAAA+TGG | - | chr8_4:41261229-41261248 | Msa1326700:three_prime_UTR | 20.0% |
| !! | AATCATATAAGATGATGATT+TGG | + | chr8_4:41261475-41261494 | None:intergenic | 20.0% |
| !! | CAATCTTTATAGAATTCATT+TGG | + | chr8_4:41261584-41261603 | None:intergenic | 20.0% |
| !! | CAAATGAATTCTATAAAGAT+TGG | - | chr8_4:41261582-41261601 | Msa1326700:intron | 20.0% |
| !! | TAGGTCTTCTATAAAATTAT+GGG | + | chr8_4:41261792-41261811 | None:intergenic | 20.0% |
| !! | TTAGGTCTTCTATAAAATTA+TGG | + | chr8_4:41261793-41261812 | None:intergenic | 20.0% |
| !!! | TTAAAGAGATTTGATTTTGT+AGG | - | chr8_4:41262026-41262045 | Msa1326700:intron | 20.0% |
| !! | TGTACACATCAATAAAAAAT+AGG | - | chr8_4:41262131-41262150 | Msa1326700:intron | 20.0% |
| !! | AATAATCCTCTATAGATATA+AGG | - | chr8_4:41262325-41262344 | Msa1326700:intron | 20.0% |
| !! | TCATAAACTATGTCAATAAT+TGG | - | chr8_4:41262461-41262480 | Msa1326700:intron | 20.0% |
| !!! | AGTTTTTTTTTTTTTTGTGG+TGG | + | chr8_4:41262679-41262698 | None:intergenic | 20.0% |
| !! | AATTATTGTGATGTTTGTAA+TGG | - | chr8_4:41263575-41263594 | Msa1326700:five_prime_UTR | 20.0% |
| ! | AAAGAGAAGAAAGAAAACTA+GGG | + | chr8_4:41261203-41261222 | None:intergenic | 25.0% |
| ! | CTATACTTCTAACAGAAAAA+AGG | - | chr8_4:41261538-41261557 | Msa1326700:intron | 25.0% |
| ! | TTAATGTTACTGTAGTTGTT+AGG | + | chr8_4:41261811-41261830 | None:intergenic | 25.0% |
| !! | CTTTTGATCTAAAAGATACA+AGG | - | chr8_4:41261859-41261878 | Msa1326700:intron | 25.0% |
| ! | AAAATAGGAAAATACTTGTG+TGG | - | chr8_4:41262146-41262165 | Msa1326700:intron | 25.0% |
| ! | AAAATGTCGAAAATAATCCT+AGG | - | chr8_4:41262392-41262411 | Msa1326700:intron | 25.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | - | chr8_4:41263245-41263264 | Msa1326700:intron | 25.0% |
| ! | AGATATTGATGAGCATTATA+GGG | - | chr8_4:41263271-41263290 | Msa1326700:intron | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | - | chr8_4:41263358-41263377 | Msa1326700:CDS | 25.0% |
| ! | GAGTGATATATATGTTGTAA+TGG | - | chr8_4:41263486-41263505 | Msa1326700:exon | 25.0% |
| GAAAGAGAAGAAAGAAAACT+AGG | + | chr8_4:41261204-41261223 | None:intergenic | 30.0% | |
| AGATTGTAGAACTTATCAGA+GGG | + | chr8_4:41261296-41261315 | None:intergenic | 30.0% | |
| TAGATTGTAGAACTTATCAG+AGG | + | chr8_4:41261297-41261316 | None:intergenic | 30.0% | |
| !! | TTTGTTGAATGTTAGTTTGC+GGG | + | chr8_4:41261994-41262013 | None:intergenic | 30.0% |
| ! | GTTTGTTGAATGTTAGTTTG+CGG | + | chr8_4:41261995-41262014 | None:intergenic | 30.0% |
| !! | AGAGATTTGATTTTGTAGGA+AGG | - | chr8_4:41262030-41262049 | Msa1326700:intron | 30.0% |
| CGACATAATAACATTTGCAA+AGG | - | chr8_4:41262053-41262072 | Msa1326700:intron | 30.0% | |
| !! | TTTTTAGAGAAAGACTTGTG+TGG | + | chr8_4:41262306-41262325 | None:intergenic | 30.0% |
| AGTCAACCTTATATCTATAG+AGG | + | chr8_4:41262334-41262353 | None:intergenic | 30.0% | |
| !! | ATAGATATAAGGTTGACTTG+TGG | - | chr8_4:41262336-41262355 | Msa1326700:intron | 30.0% |
| CGAAAATAATCCTAGGTATA+AGG | - | chr8_4:41262399-41262418 | Msa1326700:intron | 30.0% | |
| !! | AAAATTAACAACACTGGCTT+TGG | - | chr8_4:41262504-41262523 | Msa1326700:intron | 30.0% |
| CTTCGTAAACTTATCTAAGT+TGG | - | chr8_4:41262607-41262626 | Msa1326700:intron | 30.0% | |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr8_4:41262675-41262694 | None:intergenic | 30.0% |
| ! | TAGTGATATTTTGCCATTGT+CGG | + | chr8_4:41262708-41262727 | None:intergenic | 30.0% |
| GAGATATTGATGAGCATTAT+AGG | - | chr8_4:41263270-41263289 | Msa1326700:intron | 30.0% | |
| ATCCTTGAAGTAATTGGTAA+GGG | - | chr8_4:41263305-41263324 | Msa1326700:CDS | 30.0% | |
| !! | TAGGGTTGATATGATGAAAC+TGG | + | chr8_4:41261185-41261204 | None:intergenic | 35.0% |
| ATCTTCACCTTCATGAAGTT+TGG | + | chr8_4:41261372-41261391 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | chr8_4:41261372-41261391 | Msa1326700:CDS | 35.0% | |
| !! | ACTCTGATTTGGTTAAACAC+TGG | - | chr8_4:41261399-41261418 | Msa1326700:CDS | 35.0% |
| AAACACTGGACTTATGTCAT+AGG | - | chr8_4:41261413-41261432 | Msa1326700:CDS | 35.0% | |
| !! | TGATGATTTGGTTATCGATC+AGG | + | chr8_4:41261463-41261482 | None:intergenic | 35.0% |
| GATACATTGAGACTAACCTA+AGG | - | chr8_4:41261604-41261623 | Msa1326700:intron | 35.0% | |
| AAAGAGAAAGAGGTGATTGA+AGG | + | chr8_4:41261905-41261924 | None:intergenic | 35.0% | |
| AAAAGAGTCGAAAGAGAAAG+AGG | + | chr8_4:41261915-41261934 | None:intergenic | 35.0% | |
| ! | TCTCTTTCGACTCTTTTGAA+CGG | - | chr8_4:41261918-41261937 | Msa1326700:intron | 35.0% |
| !! | TTTGGCATGAGATTTTCAAG+TGG | + | chr8_4:41261967-41261986 | None:intergenic | 35.0% |
| CTTGAAAATCTCATGCCAAA+TGG | - | chr8_4:41261967-41261986 | Msa1326700:intron | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr8_4:41262218-41262237 | Msa1326700:intron | 35.0% | |
| ACAAGTCAAACCTTATACCT+AGG | + | chr8_4:41262412-41262431 | None:intergenic | 35.0% | |
| !! | TAGGTATAAGGTTTGACTTG+TGG | - | chr8_4:41262411-41262430 | Msa1326700:intron | 35.0% |
| !! | TATAAGGTTTGACTTGTGGT+TGG | - | chr8_4:41262415-41262434 | Msa1326700:intron | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr8_4:41262674-41262693 | None:intergenic | 35.0% |
| AAAAACTACACAACCGACAA+TGG | - | chr8_4:41262692-41262711 | Msa1326700:intron | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | + | chr8_4:41263168-41263187 | None:intergenic | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | + | chr8_4:41263173-41263192 | None:intergenic | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | - | chr8_4:41263170-41263189 | Msa1326700:intron | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | - | chr8_4:41263175-41263194 | Msa1326700:intron | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | - | chr8_4:41263248-41263267 | Msa1326700:intron | 35.0% | |
| TGAGCATTATAGGGTCTTTA+AGG | - | chr8_4:41263280-41263299 | Msa1326700:intron | 35.0% | |
| AAGGTCATCCTTGAAGTAAT+TGG | - | chr8_4:41263299-41263318 | Msa1326700:intron | 35.0% | |
| CATCCTTGAAGTAATTGGTA+AGG | - | chr8_4:41263304-41263323 | Msa1326700:CDS | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | + | chr8_4:41263395-41263414 | None:intergenic | 35.0% | |
| ! | AATGGCTACATGGAACATTT+TGG | - | chr8_4:41263395-41263414 | Msa1326700:CDS | 35.0% |
| ! | TTCTAAGAAATGGTGCTCTC+TGG | - | chr8_4:41261239-41261258 | Msa1326700:three_prime_UTR | 40.0% |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | - | chr8_4:41261260-41261279 | Msa1326700:exon | 40.0% |
| CACCATACCAAACTTCATGA+AGG | - | chr8_4:41261362-41261381 | Msa1326700:CDS | 40.0% | |
| CACCTTCATGAAGTTTGGTA+TGG | + | chr8_4:41261367-41261386 | None:intergenic | 40.0% | |
| AGATTGGCATCACTCTGATT+TGG | - | chr8_4:41261388-41261407 | Msa1326700:CDS | 40.0% | |
| ATACTTCAGTGCCATAGCAA+TGG | + | chr8_4:41261766-41261785 | None:intergenic | 40.0% | |
| AGAAAGAGGTGATTGAAGGA+GGG | + | chr8_4:41261901-41261920 | None:intergenic | 40.0% | |
| !!! | AGATTTTCAAGTGGAAGGCT+GGG | + | chr8_4:41261958-41261977 | None:intergenic | 40.0% |
| !!! | GCATGAGATTTTCAAGTGGA+AGG | + | chr8_4:41261963-41261982 | None:intergenic | 40.0% |
| GAAAATACTTGTGTGGACCA+AGG | - | chr8_4:41262153-41262172 | Msa1326700:intron | 40.0% | |
| TTTGGTTGTGACCACACAAT+GGG | + | chr8_4:41262186-41262205 | None:intergenic | 40.0% | |
| TGTGGTCACAACCAAAGAAA+TGG | - | chr8_4:41262190-41262209 | Msa1326700:intron | 40.0% | |
| GTGGTCACAACCAAAGAAAT+GGG | - | chr8_4:41262191-41262210 | Msa1326700:intron | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | + | chr8_4:41262204-41262223 | None:intergenic | 40.0% | |
| CATTATACATGCAACGTCCA+GGG | - | chr8_4:41262641-41262660 | Msa1326700:intron | 40.0% | |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | chr8_4:41262673-41262692 | None:intergenic | 40.0% |
| GTTGTGAATTATGATGGCAC+GGG | + | chr8_4:41263167-41263186 | None:intergenic | 40.0% | |
| CACCCTTACCAATTACTTCA+AGG | + | chr8_4:41263310-41263329 | None:intergenic | 40.0% | |
| GAAGTAATTGGTAAGGGTGA+TGG | - | chr8_4:41263311-41263330 | Msa1326700:CDS | 40.0% | |
| GTTGATGCTCATCTTGTCAA+AGG | - | chr8_4:41263434-41263453 | Msa1326700:CDS | 40.0% | |
| TGTTGTAATGGCTTAATGCG+TGG | - | chr8_4:41263498-41263517 | Msa1326700:five_prime_UTR | 40.0% | |
| GTTGTAATGGCTTAATGCGT+GGG | - | chr8_4:41263499-41263518 | Msa1326700:five_prime_UTR | 40.0% | |
| CTAACCTAAGGACTCCACTT+TGG | - | chr8_4:41261616-41261635 | Msa1326700:intron | 45.0% | |
| !! | CTCCACTTTGGTGCCATTAA+TGG | - | chr8_4:41261628-41261647 | Msa1326700:intron | 45.0% |
| TGCCATTAATGGCACCAAAG+TGG | + | chr8_4:41261633-41261652 | None:intergenic | 45.0% | |
| !! | ATGCAATGGTATGGTGCCAT+TGG | + | chr8_4:41261656-41261675 | None:intergenic | 45.0% |
| TGATGTGTGTGGATGTGTGT+GGG | + | chr8_4:41261710-41261729 | None:intergenic | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | + | chr8_4:41261711-41261730 | None:intergenic | 45.0% | |
| CACACATCCACACACATCAA+CGG | - | chr8_4:41261711-41261730 | Msa1326700:intron | 45.0% | |
| !! | GATTGGTTCTATGGCACCAA+TGG | - | chr8_4:41261738-41261757 | Msa1326700:intron | 45.0% |
| GAGAAAGAGGTGATTGAAGG+AGG | + | chr8_4:41261902-41261921 | None:intergenic | 45.0% | |
| !!! | GAGATTTTCAAGTGGAAGGC+TGG | + | chr8_4:41261959-41261978 | None:intergenic | 45.0% |
| !! | TGTTAGTTTGCGGGACCATT+TGG | + | chr8_4:41261985-41262004 | None:intergenic | 45.0% |
| TTGGTTGTGACCACACAATG+GGG | + | chr8_4:41262185-41262204 | None:intergenic | 45.0% | |
| CTTTGGTTGTGACCACACAA+TGG | + | chr8_4:41262187-41262206 | None:intergenic | 45.0% | |
| TGTGACCAAACCCAATTGTG+TGG | - | chr8_4:41262273-41262292 | Msa1326700:intron | 45.0% | |
| TGGATCAGGACCACACAATT+GGG | + | chr8_4:41262286-41262305 | None:intergenic | 45.0% | |
| GAGAAAGACTTGTGTGGATC+AGG | + | chr8_4:41262300-41262319 | None:intergenic | 45.0% | |
| GCATTATACATGCAACGTCC+AGG | - | chr8_4:41262640-41262659 | Msa1326700:intron | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | - | chr8_4:41263377-41263396 | Msa1326700:CDS | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | + | chr8_4:41263391-41263410 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | + | chr8_4:41263392-41263411 | None:intergenic | 45.0% | |
| TAATGGCTTAATGCGTGGGT+TGG | - | chr8_4:41263503-41263522 | Msa1326700:five_prime_UTR | 45.0% | |
| !! | GGTGCCATTAATGGCACCAA+TGG | - | chr8_4:41261637-41261656 | Msa1326700:intron | 50.0% |
| !! | GGTGCCATTGGTGCCATTAA+TGG | + | chr8_4:41261644-41261663 | None:intergenic | 50.0% |
| ! | GTGGTGGAGATGCAATGGTA+TGG | + | chr8_4:41261665-41261684 | None:intergenic | 50.0% |
| ! | TGTGTGTGGTGGAGATGCAA+TGG | + | chr8_4:41261670-41261689 | None:intergenic | 50.0% |
| TGTGTGATGTGTGTGTGTGG+TGG | + | chr8_4:41261681-41261700 | None:intergenic | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | + | chr8_4:41261684-41261703 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | + | chr8_4:41261709-41261728 | None:intergenic | 50.0% | |
| !! | AACGGCCAGGATTGGTTCTA+TGG | - | chr8_4:41261729-41261748 | Msa1326700:intron | 50.0% |
| !! | TGGTGCCATAGAACCAATCC+TGG | + | chr8_4:41261737-41261756 | None:intergenic | 50.0% |
| CACCAATGGCACCATTGCTA+TGG | - | chr8_4:41261752-41261771 | Msa1326700:intron | 50.0% | |
| !! | TGCCATAGCAATGGTGCCAT+TGG | + | chr8_4:41261757-41261776 | None:intergenic | 50.0% |
| ! | ACACAATGGGGTTTGGTCCT+TGG | + | chr8_4:41262173-41262192 | None:intergenic | 50.0% |
| AAGGACCAAACCCCATTGTG+TGG | - | chr8_4:41262172-41262191 | Msa1326700:intron | 50.0% | |
| TGTGACCACACAATGGGGTT+TGG | + | chr8_4:41262180-41262199 | None:intergenic | 50.0% | |
| CAGGACCACACAATTGGGTT+TGG | + | chr8_4:41262281-41262300 | None:intergenic | 50.0% | |
| GTGGATCAGGACCACACAAT+TGG | + | chr8_4:41262287-41262306 | None:intergenic | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | - | chr8_4:41263330-41263349 | Msa1326700:CDS | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | - | chr8_4:41263385-41263404 | Msa1326700:CDS | 50.0% | |
| GGCACCAAAGTGGAGTCCTT+AGG | + | chr8_4:41261623-41261642 | None:intergenic | 55.0% | |
| ATCCACACACATCAACGGCC+AGG | - | chr8_4:41261716-41261735 | Msa1326700:intron | 55.0% | |
| ATCCTGGCCGTTGATGTGTG+TGG | + | chr8_4:41261721-41261740 | None:intergenic | 55.0% | |
| CACACATCAACGGCCAGGAT+TGG | - | chr8_4:41261721-41261740 | Msa1326700:intron | 55.0% | |
| AACGTCCAGGGTTCAAACCC+CGG | - | chr8_4:41262653-41262672 | Msa1326700:intron | 55.0% | |
| GGTGGCCGGGGTTTGAACCC+TGG | + | chr8_4:41262661-41262680 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 41261135 | 41263603 | 41261135 | ID=Msa1326700;Name=Msa1326700 |
| chr8_4 | mRNA | 41261135 | 41263603 | 41261135 | ID=Msa1326700-mRNA-1;Parent=Msa1326700;Name=Msa1326700-mRNA-1;_AED=0.30;_eAED=0.30;_QI=113|1|1|1|1|1|2|128|157 |
| chr8_4 | exon | 41261135 | 41261549 | 41261135 | ID=Msa1326700-mRNA-1:exon:12140;Parent=Msa1326700-mRNA-1 |
| chr8_4 | exon | 41263304 | 41263603 | 41263304 | ID=Msa1326700-mRNA-1:exon:12139;Parent=Msa1326700-mRNA-1 |
| chr8_4 | five_prime_UTR | 41263491 | 41263603 | 41263491 | ID=Msa1326700-mRNA-1:five_prime_utr;Parent=Msa1326700-mRNA-1 |
| chr8_4 | CDS | 41263304 | 41263490 | 41263304 | ID=Msa1326700-mRNA-1:cds;Parent=Msa1326700-mRNA-1 |
| chr8_4 | CDS | 41261263 | 41261549 | 41261263 | ID=Msa1326700-mRNA-1:cds;Parent=Msa1326700-mRNA-1 |
| chr8_4 | three_prime_UTR | 41261135 | 41261262 | 41261135 | ID=Msa1326700-mRNA-1:three_prime_utr;Parent=Msa1326700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
