Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1251490 | XP_024629159.1 | 94.014 | 284 | 9 | 1 | 1 | 276 | 65 | 348 | 0.0 | 552 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1251490 | sp|Q38827|IAA9_ARATH | 65.233 | 279 | 91 | 3 | 3 | 276 | 61 | 338 | 1.83e-126 | 366 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1251490 | B7FIH2 | 94.014 | 284 | 9 | 1 | 1 | 276 | 65 | 348 | 0.0 | 552 |
Gene ID | Type | Classification |
---|---|---|
Msa1251490 | TR | AUX/IAA |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0608320 | Msa1251490 | 0.803220 | 3.867993e-49 | -8.615850e-47 |
Msa0702340 | Msa1251490 | 0.812962 | 3.255863e-51 | -8.615850e-47 |
Msa0702590 | Msa1251490 | 0.812440 | 4.234204e-51 | -8.615850e-47 |
Msa0702660 | Msa1251490 | 0.813750 | 2.184989e-51 | -8.615850e-47 |
Msa0134180 | Msa1251490 | 0.801832 | 7.473597e-49 | -8.615850e-47 |
Msa1224840 | Msa1251490 | 0.811639 | 6.329530e-51 | -8.615850e-47 |
Msa1051830 | Msa1251490 | 0.808543 | 2.940854e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1251490 | MtrunA17_Chr8g0366881 | 94.014 | 284 | 9 | 1 | 1 | 276 | 65 | 348 | 0.0 | 552 |
Msa1251490 | MtrunA17_Chr5g0411501 | 76.370 | 292 | 46 | 6 | 2 | 276 | 50 | 335 | 3.66e-159 | 446 |
Msa1251490 | MtrunA17_Chr5g0428141 | 63.194 | 288 | 89 | 8 | 2 | 276 | 64 | 347 | 3.55e-116 | 337 |
Msa1251490 | MtrunA17_Chr6g0486121 | 55.474 | 274 | 88 | 5 | 3 | 276 | 15 | 254 | 5.91e-98 | 287 |
Msa1251490 | MtrunA17_Chr2g0331411 | 50.482 | 311 | 108 | 8 | 3 | 276 | 25 | 326 | 7.08e-93 | 277 |
Msa1251490 | MtrunA17_Chr8g0390281 | 50.168 | 297 | 98 | 8 | 3 | 276 | 24 | 293 | 7.05e-88 | 263 |
Msa1251490 | MtrunA17_Chr1g0190711 | 43.793 | 290 | 96 | 7 | 3 | 276 | 15 | 253 | 1.40e-66 | 207 |
Msa1251490 | MtrunA17_Chr1g0187921 | 63.462 | 156 | 53 | 2 | 123 | 276 | 83 | 236 | 1.02e-65 | 205 |
Msa1251490 | MtrunA17_Chr7g0260641 | 62.338 | 154 | 56 | 1 | 123 | 276 | 99 | 250 | 1.22e-65 | 205 |
Msa1251490 | MtrunA17_Chr1g0184791 | 61.875 | 160 | 54 | 3 | 122 | 276 | 88 | 245 | 6.09e-63 | 198 |
Msa1251490 | MtrunA17_Chr7g0260621 | 41.825 | 263 | 82 | 8 | 3 | 265 | 11 | 202 | 6.03e-49 | 160 |
Msa1251490 | MtrunA17_Chr1g0184801 | 41.887 | 265 | 78 | 12 | 3 | 265 | 12 | 202 | 6.84e-48 | 158 |
Msa1251490 | MtrunA17_Chr1g0166011 | 39.245 | 265 | 77 | 9 | 3 | 265 | 1 | 183 | 1.48e-44 | 149 |
Msa1251490 | MtrunA17_Chr1g0187961 | 50.350 | 143 | 45 | 3 | 122 | 264 | 62 | 178 | 3.00e-42 | 142 |
Msa1251490 | MtrunA17_Chr1g0183251 | 41.799 | 189 | 76 | 5 | 122 | 276 | 81 | 269 | 5.75e-36 | 129 |
Msa1251490 | MtrunA17_Chr4g0004181 | 49.664 | 149 | 44 | 5 | 122 | 268 | 53 | 172 | 1.18e-33 | 120 |
Msa1251490 | MtrunA17_Chr8g0340731 | 37.056 | 197 | 94 | 6 | 91 | 260 | 67 | 260 | 5.24e-32 | 119 |
Msa1251490 | MtrunA17_Chr2g0330951 | 43.396 | 159 | 67 | 5 | 124 | 260 | 97 | 254 | 1.25e-29 | 112 |
Msa1251490 | MtrunA17_Chr2g0332141 | 47.059 | 119 | 50 | 4 | 158 | 272 | 8 | 117 | 3.51e-29 | 107 |
Msa1251490 | MtrunA17_Chr4g0069561 | 34.266 | 143 | 67 | 4 | 120 | 261 | 68 | 184 | 8.00e-19 | 82.0 |
Msa1251490 | MtrunA17_Chr1g0193861 | 39.091 | 110 | 52 | 2 | 155 | 264 | 82 | 176 | 6.00e-17 | 76.6 |
Msa1251490 | MtrunA17_Chr3g0137601 | 29.299 | 157 | 75 | 5 | 113 | 260 | 80 | 209 | 1.86e-16 | 76.3 |
Msa1251490 | MtrunA17_Chr7g0270851 | 41.176 | 102 | 46 | 3 | 156 | 257 | 68 | 155 | 8.81e-16 | 73.2 |
Msa1251490 | MtrunA17_Chr1g0209181 | 31.111 | 135 | 72 | 4 | 124 | 257 | 54 | 168 | 7.23e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1251490 | AT5G65670.2 | 65.704 | 277 | 91 | 2 | 3 | 276 | 61 | 336 | 2.82e-129 | 370 |
Msa1251490 | AT5G65670.1 | 65.233 | 279 | 91 | 3 | 3 | 276 | 61 | 338 | 1.86e-127 | 366 |
Msa1251490 | AT2G22670.4 | 64.311 | 283 | 82 | 6 | 2 | 275 | 63 | 335 | 1.02e-120 | 348 |
Msa1251490 | AT2G22670.3 | 64.311 | 283 | 82 | 6 | 2 | 275 | 46 | 318 | 1.17e-120 | 348 |
Msa1251490 | AT2G22670.1 | 64.311 | 283 | 82 | 6 | 2 | 275 | 46 | 318 | 1.17e-120 | 348 |
Msa1251490 | AT2G22670.5 | 63.604 | 283 | 82 | 7 | 2 | 275 | 46 | 316 | 1.41e-117 | 340 |
Msa1251490 | AT2G22670.2 | 63.604 | 283 | 82 | 7 | 2 | 275 | 46 | 316 | 1.41e-117 | 340 |
Msa1251490 | AT4G29080.1 | 51.546 | 291 | 101 | 7 | 3 | 276 | 38 | 305 | 2.54e-85 | 258 |
Msa1251490 | AT4G14550.1 | 45.091 | 275 | 103 | 7 | 3 | 276 | 1 | 228 | 2.96e-68 | 211 |
Msa1251490 | AT1G04250.1 | 44.765 | 277 | 96 | 9 | 3 | 276 | 7 | 229 | 7.13e-66 | 205 |
Msa1251490 | AT3G04730.1 | 42.907 | 289 | 96 | 8 | 3 | 276 | 2 | 236 | 4.67e-65 | 203 |
Msa1251490 | AT3G23050.1 | 42.705 | 281 | 100 | 9 | 3 | 271 | 6 | 237 | 8.81e-63 | 198 |
Msa1251490 | AT4G14550.2 | 43.561 | 264 | 101 | 7 | 3 | 265 | 1 | 217 | 2.50e-61 | 194 |
Msa1251490 | AT4G14550.3 | 41.322 | 242 | 94 | 7 | 3 | 243 | 1 | 195 | 2.08e-48 | 159 |
Msa1251490 | AT1G04240.1 | 38.202 | 267 | 80 | 9 | 1 | 265 | 3 | 186 | 1.06e-44 | 150 |
Msa1251490 | AT3G23050.2 | 38.976 | 254 | 94 | 9 | 3 | 244 | 6 | 210 | 2.24e-44 | 149 |
Msa1251490 | AT1G04240.2 | 37.736 | 265 | 84 | 8 | 1 | 265 | 103 | 286 | 8.21e-44 | 150 |
Msa1251490 | AT5G43700.1 | 38.577 | 267 | 69 | 9 | 1 | 265 | 9 | 182 | 9.27e-43 | 145 |
Msa1251490 | AT3G23030.1 | 45.833 | 168 | 60 | 2 | 97 | 264 | 34 | 170 | 7.73e-41 | 139 |
Msa1251490 | AT3G23030.2 | 45.833 | 168 | 60 | 2 | 97 | 264 | 121 | 257 | 3.97e-40 | 140 |
Msa1251490 | AT1G04550.2 | 44.382 | 178 | 67 | 6 | 122 | 276 | 68 | 236 | 2.26e-35 | 127 |
Msa1251490 | AT2G33310.2 | 44.509 | 173 | 62 | 6 | 122 | 270 | 75 | 237 | 4.40e-34 | 124 |
Msa1251490 | AT1G52830.1 | 44.444 | 144 | 53 | 4 | 122 | 265 | 69 | 185 | 4.81e-34 | 122 |
Msa1251490 | AT2G33310.3 | 44.509 | 173 | 62 | 6 | 122 | 270 | 74 | 236 | 4.88e-34 | 124 |
Msa1251490 | AT2G33310.1 | 44.509 | 173 | 62 | 6 | 122 | 270 | 74 | 236 | 4.88e-34 | 124 |
Msa1251490 | AT3G15540.1 | 45.963 | 161 | 60 | 6 | 114 | 271 | 61 | 197 | 8.49e-34 | 122 |
Msa1251490 | AT4G28640.1 | 42.197 | 173 | 72 | 4 | 113 | 265 | 78 | 242 | 9.31e-34 | 123 |
Msa1251490 | AT4G28640.3 | 42.105 | 171 | 71 | 4 | 113 | 263 | 78 | 240 | 1.94e-33 | 122 |
Msa1251490 | AT1G15580.1 | 45.775 | 142 | 45 | 3 | 119 | 259 | 49 | 159 | 2.03e-33 | 120 |
Msa1251490 | AT4G14560.1 | 49.286 | 140 | 42 | 3 | 122 | 261 | 54 | 164 | 8.07e-33 | 118 |
Msa1251490 | AT4G28640.2 | 42.105 | 171 | 71 | 4 | 113 | 263 | 78 | 240 | 1.51e-32 | 121 |
Msa1251490 | AT3G16500.1 | 40.523 | 153 | 71 | 4 | 124 | 260 | 104 | 252 | 1.80e-28 | 110 |
Msa1251490 | AT3G16500.2 | 40.523 | 153 | 71 | 4 | 124 | 260 | 104 | 252 | 1.87e-28 | 110 |
Msa1251490 | AT1G04100.1 | 37.500 | 168 | 76 | 4 | 125 | 265 | 95 | 260 | 8.16e-28 | 108 |
Msa1251490 | AT4G14550.4 | 37.245 | 196 | 77 | 6 | 3 | 197 | 1 | 151 | 3.09e-27 | 104 |
Msa1251490 | AT5G25890.1 | 37.415 | 147 | 70 | 2 | 121 | 267 | 46 | 170 | 1.25e-26 | 102 |
Msa1251490 | AT1G51950.1 | 39.241 | 158 | 71 | 5 | 124 | 260 | 97 | 250 | 1.10e-25 | 102 |
Msa1251490 | AT3G23050.3 | 34.783 | 207 | 76 | 8 | 3 | 197 | 6 | 165 | 1.75e-23 | 94.4 |
Msa1251490 | AT3G17600.1 | 38.931 | 131 | 56 | 4 | 127 | 257 | 48 | 154 | 1.47e-22 | 91.7 |
Msa1251490 | AT3G62100.1 | 39.423 | 104 | 48 | 2 | 154 | 257 | 80 | 168 | 2.74e-18 | 80.5 |
Msa1251490 | AT2G46990.1 | 36.792 | 106 | 52 | 1 | 154 | 259 | 82 | 172 | 8.43e-18 | 79.3 |
Msa1251490 | AT1G15050.2 | 36.190 | 105 | 51 | 1 | 158 | 262 | 62 | 150 | 6.12e-14 | 68.2 |
Msa1251490 | AT1G15050.1 | 36.190 | 105 | 51 | 1 | 158 | 262 | 94 | 182 | 1.38e-13 | 68.2 |
Msa1251490 | AT3G62100.2 | 38.462 | 91 | 41 | 2 | 154 | 244 | 80 | 155 | 4.22e-13 | 65.9 |
Msa1251490 | AT2G46990.2 | 35.165 | 91 | 44 | 1 | 154 | 244 | 82 | 157 | 2.90e-12 | 63.9 |
Msa1251490 | AT2G01200.2 | 32.000 | 125 | 66 | 2 | 138 | 262 | 83 | 188 | 2.10e-11 | 62.0 |
Msa1251490 | AT2G01200.1 | 32.000 | 125 | 66 | 2 | 138 | 262 | 83 | 188 | 2.10e-11 | 62.0 |
Msa1251490 | AT4G32280.1 | 23.810 | 168 | 76 | 4 | 122 | 257 | 93 | 240 | 2.17e-11 | 63.2 |
Msa1251490 | AT4G32280.2 | 30.693 | 101 | 50 | 2 | 157 | 257 | 118 | 198 | 2.45e-11 | 62.4 |
Find 92 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCTGTCGCCTTCAAATTT+AGG | 0.166961 | 8_2:+47616207 | None:intergenic |
TTCTCTTGTACCACCTTCTT+TGG | 0.228604 | 8_2:+47615709 | None:intergenic |
TCCCAGAAGACTGTTGTTTC+AGG | 0.240495 | 8_2:-47616056 | Msa1251490:CDS |
AGCTAGATAGATGCTATTAT+TGG | 0.249002 | 8_2:-47613221 | Msa1251490:exon |
GGGAGTTCTGTAATATTTAT+AGG | 0.258895 | 8_2:-47612969 | Msa1251490:three_prime_UTR |
TGCCTGAAACAACAGTCTTC+TGG | 0.283080 | 8_2:+47616054 | None:intergenic |
ATCCAATGTGAAGCTATTAA+AGG | 0.286091 | 8_2:+47612835 | None:intergenic |
CTGCTTTCGCCAAGACCTTC+TGG | 0.286943 | 8_2:-47615760 | Msa1251490:CDS |
GAGTTAAGGCTCGGACTTCC+TGG | 0.311938 | 8_2:-47616188 | Msa1251490:CDS |
AAAAGATCAAGATCCCTTTC+AGG | 0.324520 | 8_2:+47616155 | None:intergenic |
CACTTGAGGGGTAAAATAAA+AGG | 0.332917 | 8_2:+47612874 | None:intergenic |
AGCTTCAGTATTTGTATGTT+GGG | 0.350041 | 8_2:-47612989 | Msa1251490:three_prime_UTR |
GCCTGAAACAACAGTCTTCT+GGG | 0.362984 | 8_2:+47616055 | None:intergenic |
CCAGTTCCATTTGCTGTACA+AGG | 0.365208 | 8_2:+47615685 | None:intergenic |
GGCCTCCTATTAGATCATTT+AGG | 0.366841 | 8_2:-47615300 | Msa1251490:CDS |
ATAAAGAACAAGACACTACT+AGG | 0.378364 | 8_2:+47613059 | None:intergenic |
CAAGGTCAGACGACAGTTCC+TGG | 0.380173 | 8_2:+47615140 | None:intergenic |
TGGATGGCGCTCCTTATCTT+AGG | 0.388317 | 8_2:-47615192 | Msa1251490:CDS |
ATTTATAGGAACCTTATGTT+TGG | 0.401155 | 8_2:-47612955 | Msa1251490:three_prime_UTR |
TTCTTCTCTTTGCAGCTCCA+AGG | 0.402863 | 8_2:-47613268 | Msa1251490:intron |
CTTTCAGGCGACTGAGATCC+AGG | 0.408190 | 8_2:+47616170 | None:intergenic |
TTTAATAGCTTCACATTGGA+TGG | 0.408254 | 8_2:-47612833 | Msa1251490:three_prime_UTR |
GAGCAGATTCCGTCTTTACT+AGG | 0.411048 | 8_2:+47616083 | None:intergenic |
TGTGGTTCGCATGGAGCTCC+AGG | 0.419336 | 8_2:-47614950 | Msa1251490:CDS |
GGCATTTCTTTAACTGTAGT+AGG | 0.421367 | 8_2:+47615730 | None:intergenic |
CTATGTGATTTGTTATCCCT+TGG | 0.421781 | 8_2:-47612902 | Msa1251490:three_prime_UTR |
ATCTATCTAGCTCCTGCTCC+TGG | 0.422058 | 8_2:+47613232 | None:intergenic |
GCGATGCAGGCAAAATATAC+TGG | 0.428432 | 8_2:-47615802 | Msa1251490:intron |
TAGCTTCAGTATTTGTATGT+TGG | 0.428483 | 8_2:-47612990 | Msa1251490:three_prime_UTR |
GCTAGATAGATGCTATTATT+GGG | 0.445855 | 8_2:-47613220 | Msa1251490:exon |
GAGAACCCTTGTACAGCAAA+TGG | 0.446892 | 8_2:-47615691 | Msa1251490:CDS |
TACGACAGAGCACAAGTTGT+TGG | 0.447586 | 8_2:-47615325 | Msa1251490:intron |
ATTTGAAGGCGACAGAGTTA+AGG | 0.448866 | 8_2:-47616202 | Msa1251490:CDS |
GGTTCTGATGCAATTGGCTT+AGG | 0.454909 | 8_2:-47614129 | Msa1251490:intron |
ATGAAGGGTTCTGATGCAAT+TGG | 0.459012 | 8_2:-47614135 | Msa1251490:CDS |
TCTTCTCTTTGCAGCTCCAA+GGG | 0.460018 | 8_2:-47613267 | Msa1251490:intron |
CTTTGCAGCTCCAAGGGCCA+TGG | 0.469634 | 8_2:-47613261 | Msa1251490:intron |
CCTTGTACAGCAAATGGAAC+TGG | 0.471486 | 8_2:-47615685 | Msa1251490:CDS |
GTTGAGTGAGAGCAAATTGA+AGG | 0.479532 | 8_2:-47614918 | Msa1251490:CDS |
TCACTCAACATTTCTCTCCC+TGG | 0.480300 | 8_2:+47614932 | None:intergenic |
TTCGTCATTGTTCTTTGAAG+TGG | 0.480383 | 8_2:+47615261 | None:intergenic |
GATGGTGACTGGATGCTTGT+AGG | 0.487607 | 8_2:-47614851 | Msa1251490:CDS |
AGTTGTACTTGAGAAGGTTG+TGG | 0.487854 | 8_2:-47613164 | Msa1251490:three_prime_UTR |
CTGGATCTCAGTCGCCTGAA+AGG | 0.489384 | 8_2:-47616169 | Msa1251490:CDS |
TGGATCTCAGTCGCCTGAAA+GGG | 0.490957 | 8_2:-47616168 | Msa1251490:CDS |
GTCATTGTTCTTTGAAGTGG+TGG | 0.492137 | 8_2:+47615264 | None:intergenic |
CGTCTTTACTAGGAAGCAAA+GGG | 0.493702 | 8_2:+47616093 | None:intergenic |
CAGACATTCAACCAAACATA+AGG | 0.493943 | 8_2:+47612944 | None:intergenic |
AAGTAAAGTTGTACTTGAGA+AGG | 0.494679 | 8_2:-47613170 | Msa1251490:three_prime_UTR |
TTTGTGAAGGTTAGCATGGA+TGG | 0.502534 | 8_2:-47615208 | Msa1251490:CDS |
AAATCAACCTTCCTAAGATA+AGG | 0.503248 | 8_2:+47615181 | None:intergenic |
TTCCTAAATGATCTAATAGG+AGG | 0.509027 | 8_2:+47615298 | None:intergenic |
GGATTTAGTTCTTTGTACCA+TGG | 0.511349 | 8_2:+47613132 | None:intergenic |
TATTTAACCATCAAAACTCA+TGG | 0.516064 | 8_2:+47613111 | None:intergenic |
CAAAAGACTGAAAATCATGA+AGG | 0.520025 | 8_2:-47614151 | Msa1251490:CDS |
TACCTTTAATAGCTTCACAT+TGG | 0.521689 | 8_2:-47612837 | Msa1251490:three_prime_UTR |
GTTGTTTCAGGCAACAAAAG+AGG | 0.523282 | 8_2:-47616044 | Msa1251490:CDS |
GGTTGAGCTCCAGAAGGTCT+TGG | 0.524873 | 8_2:+47615751 | None:intergenic |
CCTTTGCTTCCTAGTAAAGA+CGG | 0.527973 | 8_2:-47616092 | Msa1251490:CDS |
ACAAATAGTGCAGCTGCACC+AGG | 0.530129 | 8_2:+47615226 | None:intergenic |
CCGTCTTTACTAGGAAGCAA+AGG | 0.538094 | 8_2:+47616092 | None:intergenic |
TTAATAGCTTCACATTGGAT+GGG | 0.543951 | 8_2:-47612832 | None:intergenic |
CCTGCATGGTTCTGAATATG+TGG | 0.554207 | 8_2:-47614891 | Msa1251490:CDS |
AGTTAAAGAAATGCCAAAGA+AGG | 0.560187 | 8_2:-47615722 | Msa1251490:CDS |
TGGCGCTCCTTATCTTAGGA+AGG | 0.560715 | 8_2:-47615188 | Msa1251490:CDS |
AAGAACAATGACGAAGTGGA+TGG | 0.561142 | 8_2:-47615253 | Msa1251490:CDS |
CAGTTCCATTTGCTGTACAA+GGG | 0.561512 | 8_2:+47615686 | None:intergenic |
TCAGGTCAATGTGGTTCGCA+TGG | 0.563755 | 8_2:-47614959 | Msa1251490:intron |
ACAGAGCACAAGTTGTTGGT+TGG | 0.565232 | 8_2:-47615321 | Msa1251490:intron |
GACGAAGTGGATGGAAAACC+TGG | 0.579600 | 8_2:-47615244 | Msa1251490:CDS |
AACAGCTGAACATCTTCTCA+AGG | 0.587195 | 8_2:+47615122 | None:intergenic |
ATGAAGATAAAGATGGTGAC+TGG | 0.592828 | 8_2:-47614862 | Msa1251490:CDS |
AAGGCGACAGAGTTAAGGCT+CGG | 0.594838 | 8_2:-47616197 | Msa1251490:CDS |
TAAAGAACAAGACACTACTA+GGG | 0.596967 | 8_2:+47613060 | None:intergenic |
CCACATATTCAGAACCATGC+AGG | 0.602515 | 8_2:+47614891 | None:intergenic |
TAAAGAAATGCCAAAGAAGG+TGG | 0.603403 | 8_2:-47615719 | Msa1251490:CDS |
TTCAAAGAACAATGACGAAG+TGG | 0.604897 | 8_2:-47615257 | Msa1251490:CDS |
AATGTGAAGCTATTAAAGGT+AGG | 0.605725 | 8_2:+47612839 | None:intergenic |
TGCAGCTGCACTATTTGTGA+AGG | 0.608355 | 8_2:-47615221 | Msa1251490:CDS |
AAAAGACTGAAAATCATGAA+GGG | 0.608483 | 8_2:-47614150 | Msa1251490:CDS |
AGGAAACACTTCCAGTGTGT+CGG | 0.619955 | 8_2:+47616016 | None:intergenic |
AAATTGAAGGACTTCCTGCA+TGG | 0.622375 | 8_2:-47614905 | Msa1251490:CDS |
GTCACTTATGAAGATAAAGA+TGG | 0.623567 | 8_2:-47614869 | Msa1251490:CDS |
CTAGGAAGCAAAGGGAAGAG+CGG | 0.624666 | 8_2:+47616101 | None:intergenic |
GTAGTAGGTTGAGCTCCAGA+AGG | 0.631684 | 8_2:+47615745 | None:intergenic |
GCTTGTAGGAGATGTACCAT+GGG | 0.634513 | 8_2:-47614837 | Msa1251490:CDS |
ACTATTTGTGAAGGTTAGCA+TGG | 0.640434 | 8_2:-47615212 | Msa1251490:CDS |
GTGGTTCGCATGGAGCTCCA+GGG | 0.655439 | 8_2:-47614949 | Msa1251490:CDS |
AAGAAACTATACAACATACC+AGG | 0.668056 | 8_2:-47615158 | Msa1251490:CDS |
TGCTTGTAGGAGATGTACCA+TGG | 0.683935 | 8_2:-47614838 | Msa1251490:CDS |
TGCACCTCATCAGGTCAATG+TGG | 0.701484 | 8_2:-47614968 | Msa1251490:intron |
CACACTGGAAGTGTTTCCTG+AGG | 0.707617 | 8_2:-47616012 | Msa1251490:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTATTCAAAATTGAT+AGG | + | chr8_2:47613174-47613193 | None:intergenic | 10.0% |
!! | GTAAAATATATAGAAATAAT+CGG | - | chr8_2:47613461-47613480 | Msa1251490:intron | 10.0% |
!!! | TTATTATTTTGATATAGTTT+AGG | - | chr8_2:47613589-47613608 | Msa1251490:intron | 10.0% |
!!! | TATTATTTTGATATAGTTTA+GGG | - | chr8_2:47613590-47613609 | Msa1251490:intron | 10.0% |
!! | ATTTAAGTAACAAATTTAAA+AGG | + | chr8_2:47614546-47614565 | None:intergenic | 10.0% |
!!! | TTTAAATTTGTTACTTAAAT+AGG | - | chr8_2:47614546-47614565 | Msa1251490:intron | 10.0% |
!! | AATATATTAACTCTAGTAAA+AGG | + | chr8_2:47613077-47613096 | None:intergenic | 15.0% |
!!! | TACTAGAGTTAATATATTTT+TGG | - | chr8_2:47613079-47613098 | Msa1251490:three_prime_UTR | 15.0% |
!! | TGAATAAAAAAAAGATCAAA+TGG | - | chr8_2:47613182-47613201 | Msa1251490:three_prime_UTR | 15.0% |
!!! | CTAATTAATATGAGTATTTT+AGG | + | chr8_2:47615397-47615416 | None:intergenic | 15.0% |
!! | TGGACTATTTAATTAAATAA+GGG | - | chr8_2:47615451-47615470 | Msa1251490:intron | 15.0% |
!!! | TTTTTCCTAAATGATCTAAT+AGG | + | chr8_2:47613753-47613772 | None:intergenic | 20.0% |
!!! | TCCATGTAGTATATTTTTTT+TGG | - | chr8_2:47614467-47614486 | Msa1251490:intron | 20.0% |
!! | ACCAAAAAAAATATACTACA+TGG | + | chr8_2:47614471-47614490 | None:intergenic | 20.0% |
!!! | TTCAATTATGAAGGTTTTTA+GGG | + | chr8_2:47614495-47614514 | None:intergenic | 20.0% |
!!! | TTTCAATTATGAAGGTTTTT+AGG | + | chr8_2:47614496-47614515 | None:intergenic | 20.0% |
!! | TATATCAACACATTTCAATA+GGG | + | chr8_2:47614702-47614721 | None:intergenic | 20.0% |
!! | ATATATCAACACATTTCAAT+AGG | + | chr8_2:47614703-47614722 | None:intergenic | 20.0% |
!!! | AAATTTCATACATGTTTTGA+AGG | - | chr8_2:47615104-47615123 | Msa1251490:intron | 20.0% |
!! | AAGCATAATATTGCAAAAAT+GGG | - | chr8_2:47615269-47615288 | Msa1251490:CDS | 20.0% |
!!! | TCAACATAAGTTGATATATA+CGG | - | chr8_2:47615292-47615311 | Msa1251490:CDS | 20.0% |
!!! | ACCAATTTTTGCTTATATTT+TGG | - | chr8_2:47615350-47615369 | Msa1251490:intron | 20.0% |
!!! | CCAATTTTTGCTTATATTTT+GGG | - | chr8_2:47615351-47615370 | Msa1251490:intron | 20.0% |
!! | AATACTCATATTAATTAGAG+TGG | - | chr8_2:47615399-47615418 | Msa1251490:intron | 20.0% |
!!! | GTGGACTATTTAATTAAATA+AGG | - | chr8_2:47615450-47615469 | Msa1251490:intron | 20.0% |
!!! | TAATTAAATAAGGGTATTGT+TGG | - | chr8_2:47615460-47615479 | Msa1251490:intron | 20.0% |
!!! | TCTTTTTTTCTCTTTTTTTG+TGG | + | chr8_2:47615576-47615595 | None:intergenic | 20.0% |
!! | AAAATAAAAGGAAAAACCAA+GGG | + | chr8_2:47616162-47616181 | None:intergenic | 20.0% |
!! | TAAAATAAAAGGAAAAACCA+AGG | + | chr8_2:47616163-47616182 | None:intergenic | 20.0% |
!! | TATTAAAAAATACACTTGAG+GGG | + | chr8_2:47616186-47616205 | None:intergenic | 20.0% |
!! | GTATTAAAAAATACACTTGA+GGG | + | chr8_2:47616187-47616206 | None:intergenic | 20.0% |
!!! | AAAGTTTAACTTTTTACCTC+AGG | + | chr8_2:47613052-47613071 | None:intergenic | 25.0% |
! | AAGTAGAACATTCTACATTA+AGG | - | chr8_2:47613418-47613437 | Msa1251490:intron | 25.0% |
! | ATATAGTTTAGGGACTAAAT+AGG | - | chr8_2:47613600-47613619 | Msa1251490:intron | 25.0% |
! | GTTTACTCAATACCTTAAAA+GGG | - | chr8_2:47613656-47613675 | Msa1251490:intron | 25.0% |
!! | ACATCAAAAAATCCCTTTTA+AGG | + | chr8_2:47613671-47613690 | None:intergenic | 25.0% |
!!! | TGCTTTCTAAAATGTATCTT+TGG | - | chr8_2:47614035-47614054 | Msa1251490:intron | 25.0% |
! | TGTATATTAAATGGTAGTTG+AGG | - | chr8_2:47614398-47614417 | Msa1251490:intron | 25.0% |
! | ATCATTCTTGTAAGGAATTA+TGG | + | chr8_2:47614429-47614448 | None:intergenic | 25.0% |
! | ATTTGCAAATCATTCTTGTA+AGG | + | chr8_2:47614437-47614456 | None:intergenic | 25.0% |
!!! | TCAATTATGAAGGTTTTTAG+GGG | + | chr8_2:47614494-47614513 | None:intergenic | 25.0% |
!! | TCATGTCTTTTCAATTATGA+AGG | + | chr8_2:47614504-47614523 | None:intergenic | 25.0% |
! | AAATAGGAACATAAAAGTCT+AGG | - | chr8_2:47614562-47614581 | Msa1251490:intron | 25.0% |
! | ATAAAAGTCTAGGTATGTTA+TGG | - | chr8_2:47614572-47614591 | Msa1251490:intron | 25.0% |
! | AAAAGACTGAAAATCATGAA+GGG | - | chr8_2:47614895-47614914 | Msa1251490:CDS | 25.0% |
! | TATTCAAAATTAGTCACACA+TGG | - | chr8_2:47614949-47614968 | Msa1251490:CDS | 25.0% |
!! | TAAGTTTATGTTGTTTACAC+AGG | - | chr8_2:47615059-47615078 | Msa1251490:intron | 25.0% |
! | GAAGCATAATATTGCAAAAA+TGG | - | chr8_2:47615268-47615287 | Msa1251490:CDS | 25.0% |
! | CCCAAAATATAAGCAAAAAT+TGG | + | chr8_2:47615354-47615373 | None:intergenic | 25.0% |
! | TTTAATGATTCAGTTGATTG+TGG | - | chr8_2:47615602-47615621 | Msa1251490:intron | 25.0% |
! | TACCACAAGAAAACTATTAT+TGG | - | chr8_2:47615729-47615748 | Msa1251490:CDS | 25.0% |
!! | TACCAATAATAGTTTTCTTG+TGG | + | chr8_2:47615734-47615753 | None:intergenic | 25.0% |
! | TATTTAACCATCAAAACTCA+TGG | + | chr8_2:47615937-47615956 | None:intergenic | 25.0% |
!!! | TGAGTTTTGATGGTTAAATA+TGG | - | chr8_2:47615937-47615956 | Msa1251490:intron | 25.0% |
! | ATTTATAGGAACCTTATGTT+TGG | - | chr8_2:47616090-47616109 | Msa1251490:CDS | 25.0% |
! | GGTATTAAAAAATACACTTG+AGG | + | chr8_2:47616188-47616207 | None:intergenic | 25.0% |
!!! | TCAAGTTTTGTTGAGTTCAA+TGG | + | chr8_2:47612917-47612936 | None:intergenic | 30.0% |
AGTTAAAGAAATGCCAAAGA+AGG | - | chr8_2:47613323-47613342 | Msa1251490:intron | 30.0% | |
TGTAGAATGTTCTACTTACT+TGG | + | chr8_2:47613415-47613434 | None:intergenic | 30.0% | |
ATATATTGACAAGAGCTACT+AGG | - | chr8_2:47613498-47613517 | Msa1251490:intron | 30.0% | |
TATATTGACAAGAGCTACTA+GGG | - | chr8_2:47613499-47613518 | Msa1251490:intron | 30.0% | |
! | AGACGGATTTCATATAGTTT+AGG | - | chr8_2:47613529-47613548 | Msa1251490:intron | 30.0% |
! | GACGGATTTCATATAGTTTA+GGG | - | chr8_2:47613530-47613549 | Msa1251490:intron | 30.0% |
TTCTTCAATGACTAAAGTGA+TGG | - | chr8_2:47613634-47613653 | Msa1251490:intron | 30.0% | |
GGTTTACTCAATACCTTAAA+AGG | - | chr8_2:47613655-47613674 | Msa1251490:intron | 30.0% | |
TTCCTAAATGATCTAATAGG+AGG | + | chr8_2:47613750-47613769 | None:intergenic | 30.0% | |
ATCATTTAGGAAAAACTCAC+TGG | - | chr8_2:47613758-47613777 | Msa1251490:intron | 30.0% | |
AAATCAACCTTCCTAAGATA+AGG | + | chr8_2:47613867-47613886 | None:intergenic | 30.0% | |
AAGAAACTATACAACATACC+AGG | - | chr8_2:47613887-47613906 | Msa1251490:intron | 30.0% | |
GTCACTTATGAAGATAAAGA+TGG | - | chr8_2:47614176-47614195 | Msa1251490:intron | 30.0% | |
GATTTAAAAACTTACTCCCA+TGG | + | chr8_2:47614227-47614246 | None:intergenic | 30.0% | |
!! | TGTTTTTGACAAAGTGTTCA+AGG | + | chr8_2:47614344-47614363 | None:intergenic | 30.0% |
ATATATAAACTGTCCCCAAA+GGG | + | chr8_2:47614378-47614397 | None:intergenic | 30.0% | |
AATATATAAACTGTCCCCAA+AGG | + | chr8_2:47614379-47614398 | None:intergenic | 30.0% | |
ATATATCCATGTTTGTACCT+AGG | - | chr8_2:47614717-47614736 | Msa1251490:intron | 30.0% | |
ATAGTATGCAAAATAGAGTG+CGG | + | chr8_2:47614826-47614845 | None:intergenic | 30.0% | |
CAAAAGACTGAAAATCATGA+AGG | - | chr8_2:47614894-47614913 | Msa1251490:CDS | 30.0% | |
GTTTACACAGGCATAATATA+TGG | - | chr8_2:47615071-47615090 | Msa1251490:intron | 30.0% | |
ACTCACAAAACACAACAATT+TGG | + | chr8_2:47615151-47615170 | None:intergenic | 30.0% | |
AACATCAATGAATCATCTCT+TGG | - | chr8_2:47615487-47615506 | Msa1251490:intron | 30.0% | |
! | AATAGTTTTCTTGTGGTACA+AGG | + | chr8_2:47615727-47615746 | None:intergenic | 30.0% |
AGCTAGATAGATGCTATTAT+TGG | - | chr8_2:47615824-47615843 | Msa1251490:intron | 30.0% | |
GCTAGATAGATGCTATTATT+GGG | - | chr8_2:47615825-47615844 | Msa1251490:intron | 30.0% | |
AAGTAAAGTTGTACTTGAGA+AGG | - | chr8_2:47615875-47615894 | Msa1251490:intron | 30.0% | |
!! | ACTAAATCCATGAGTTTTGA+TGG | - | chr8_2:47615927-47615946 | Msa1251490:intron | 30.0% |
TAAAGAACAAGACACTACTA+GGG | + | chr8_2:47615988-47616007 | None:intergenic | 30.0% | |
ATAAAGAACAAGACACTACT+AGG | + | chr8_2:47615989-47616008 | None:intergenic | 30.0% | |
TAGCTTCAGTATTTGTATGT+TGG | - | chr8_2:47616055-47616074 | Msa1251490:CDS | 30.0% | |
AGCTTCAGTATTTGTATGTT+GGG | - | chr8_2:47616056-47616075 | Msa1251490:CDS | 30.0% | |
GGGAGTTCTGTAATATTTAT+AGG | - | chr8_2:47616076-47616095 | Msa1251490:CDS | 30.0% | |
AATGTGAAGCTATTAAAGGT+AGG | + | chr8_2:47616209-47616228 | None:intergenic | 30.0% | |
TACCTTTAATAGCTTCACAT+TGG | - | chr8_2:47616208-47616227 | Msa1251490:CDS | 30.0% | |
ATCCAATGTGAAGCTATTAA+AGG | + | chr8_2:47616213-47616232 | None:intergenic | 30.0% | |
AAAAGATCAAGATCCCTTTC+AGG | + | chr8_2:47612893-47612912 | None:intergenic | 35.0% | |
!! | TGCAAATGATTTTAGTGCCT+AGG | - | chr8_2:47613107-47613126 | Msa1251490:three_prime_UTR | 35.0% |
TAGGGATTGTTGGAACTATA+GGG | - | chr8_2:47613139-47613158 | Msa1251490:three_prime_UTR | 35.0% | |
TTCTTAACAATATGCGATGC+AGG | - | chr8_2:47613230-47613249 | Msa1251490:exon | 35.0% | |
GGCATTTCTTTAACTGTAGT+AGG | + | chr8_2:47613318-47613337 | None:intergenic | 35.0% | |
TAAAGAAATGCCAAAGAAGG+TGG | - | chr8_2:47613326-47613345 | Msa1251490:intron | 35.0% | |
TTAAGGATCTCTCTTCTACT+TGG | - | chr8_2:47613435-47613454 | Msa1251490:intron | 35.0% | |
GACAGATGTCAGATAGTTTA+AGG | - | chr8_2:47613561-47613580 | Msa1251490:intron | 35.0% | |
! | TTCGTCATTGTTCTTTGAAG+TGG | + | chr8_2:47613787-47613806 | None:intergenic | 35.0% |
TTCAAAGAACAATGACGAAG+TGG | - | chr8_2:47613788-47613807 | Msa1251490:intron | 35.0% | |
ACTATTTGTGAAGGTTAGCA+TGG | - | chr8_2:47613833-47613852 | Msa1251490:intron | 35.0% | |
!! | ATGTTCAGCTGTTTTACCTT+AGG | - | chr8_2:47613933-47613952 | Msa1251490:intron | 35.0% |
ATGAAGATAAAGATGGTGAC+TGG | - | chr8_2:47614183-47614202 | Msa1251490:intron | 35.0% | |
TTACATGTGCGATAACATCA+TGG | + | chr8_2:47614308-47614327 | None:intergenic | 35.0% | |
! | CTAGGTATGTTATGGTCTTA+TGG | - | chr8_2:47614580-47614599 | Msa1251490:intron | 35.0% |
! | CAGACTTAGGAACTTGATTT+TGG | - | chr8_2:47614627-47614646 | Msa1251490:intron | 35.0% |
TTAATGCCTAGGTACAAACA+TGG | + | chr8_2:47614726-47614745 | None:intergenic | 35.0% | |
ATTTGCAACACTTAATGCCT+AGG | + | chr8_2:47614737-47614756 | None:intergenic | 35.0% | |
TCAGGATCGTAATCTACTAT+TGG | + | chr8_2:47614982-47615001 | None:intergenic | 35.0% | |
CGGTCTAACTTAAACATTTC+AGG | + | chr8_2:47615000-47615019 | None:intergenic | 35.0% | |
!!! | TTGCTTATATTTTGGGACGA+AGG | - | chr8_2:47615358-47615377 | Msa1251490:intron | 35.0% |
!!! | TGCTTATATTTTGGGACGAA+GGG | - | chr8_2:47615359-47615378 | Msa1251490:intron | 35.0% |
GTGGTTGAAAGTAGTAGTAA+AGG | - | chr8_2:47615418-47615437 | Msa1251490:intron | 35.0% | |
GTAGTAGTAAAGGAATAGCT+AGG | - | chr8_2:47615428-47615447 | Msa1251490:intron | 35.0% | |
!! | ATTATGATTGAAAGTGCCTC+TGG | - | chr8_2:47615655-47615674 | Msa1251490:intron | 35.0% |
!! | GGATTTAGTTCTTTGTACCA+TGG | + | chr8_2:47615916-47615935 | None:intergenic | 35.0% |
CAGACATTCAACCAAACATA+AGG | + | chr8_2:47616104-47616123 | None:intergenic | 35.0% | |
!! | CTATGTGATTTGTTATCCCT+TGG | - | chr8_2:47616143-47616162 | Msa1251490:CDS | 35.0% |
CACTTGAGGGGTAAAATAAA+AGG | + | chr8_2:47616174-47616193 | None:intergenic | 35.0% | |
ACTCTGTCGCCTTCAAATTT+AGG | + | chr8_2:47612841-47612860 | None:intergenic | 40.0% | |
ATTTGAAGGCGACAGAGTTA+AGG | - | chr8_2:47612843-47612862 | Msa1251490:three_prime_UTR | 40.0% | |
CGTCTTTACTAGGAAGCAAA+GGG | + | chr8_2:47612955-47612974 | None:intergenic | 40.0% | |
CCTTTGCTTCCTAGTAAAGA+CGG | - | chr8_2:47612953-47612972 | Msa1251490:three_prime_UTR | 40.0% | |
! | GTTGTTTCAGGCAACAAAAG+AGG | - | chr8_2:47613001-47613020 | Msa1251490:three_prime_UTR | 40.0% |
AATCCCTAGGTTAACATCCT+AGG | + | chr8_2:47613127-47613146 | None:intergenic | 40.0% | |
GATGTTAACCTAGGGATTGT+TGG | - | chr8_2:47613129-47613148 | Msa1251490:three_prime_UTR | 40.0% | |
CTATAGTTCCAACAATCCCT+AGG | + | chr8_2:47613140-47613159 | None:intergenic | 40.0% | |
CTAGGGATTGTTGGAACTAT+AGG | - | chr8_2:47613138-47613157 | Msa1251490:three_prime_UTR | 40.0% | |
TTCTCTTGTACCACCTTCTT+TGG | + | chr8_2:47613339-47613358 | None:intergenic | 40.0% | |
!! | CAGTTCCATTTGCTGTACAA+GGG | + | chr8_2:47613362-47613381 | None:intergenic | 40.0% |
GGCCTCCTATTAGATCATTT+AGG | - | chr8_2:47613745-47613764 | Msa1251490:intron | 40.0% | |
!! | GTCATTGTTCTTTGAAGTGG+TGG | + | chr8_2:47613784-47613803 | None:intergenic | 40.0% |
AAGAACAATGACGAAGTGGA+TGG | - | chr8_2:47613792-47613811 | Msa1251490:intron | 40.0% | |
TTTGTGAAGGTTAGCATGGA+TGG | - | chr8_2:47613837-47613856 | Msa1251490:intron | 40.0% | |
AACAGCTGAACATCTTCTCA+AGG | + | chr8_2:47613926-47613945 | None:intergenic | 40.0% | |
AAGTTGCAACAGATCACCTA+AGG | + | chr8_2:47613952-47613971 | None:intergenic | 40.0% | |
GTTGAGTGAGAGCAAATTGA+AGG | - | chr8_2:47614127-47614146 | Msa1251490:intron | 40.0% | |
AAATTGAAGGACTTCCTGCA+TGG | - | chr8_2:47614140-47614159 | Msa1251490:CDS | 40.0% | |
! | TAGATGAAGAGTGCAGACTT+AGG | - | chr8_2:47614614-47614633 | Msa1251490:intron | 40.0% |
!! | ACTGTCGATTTGAAGACTGA+TGG | - | chr8_2:47614778-47614797 | Msa1251490:intron | 40.0% |
! | ATGAAGGGTTCTGATGCAAT+TGG | - | chr8_2:47614910-47614929 | Msa1251490:CDS | 40.0% |
TTAAGTTAGACCGTCGAATC+TGG | - | chr8_2:47615007-47615026 | Msa1251490:intron | 40.0% | |
TAAGTTAGACCGTCGAATCT+GGG | - | chr8_2:47615008-47615027 | Msa1251490:intron | 40.0% | |
GTAGTAAAGGAATAGCTAGG+TGG | - | chr8_2:47615431-47615450 | Msa1251490:intron | 40.0% | |
TCATTGCAGATGTAAACCAG+AGG | + | chr8_2:47615674-47615693 | None:intergenic | 40.0% | |
AGTTGTACTTGAGAAGGTTG+TGG | - | chr8_2:47615881-47615900 | Msa1251490:intron | 40.0% | |
GGTTGTGGAAAGAAAAACCA+TGG | - | chr8_2:47615896-47615915 | Msa1251490:intron | 40.0% | |
CCGTCTTTACTAGGAAGCAA+AGG | + | chr8_2:47612956-47612975 | None:intergenic | 45.0% | |
GAGCAGATTCCGTCTTTACT+AGG | + | chr8_2:47612965-47612984 | None:intergenic | 45.0% | |
!! | TCCCAGAAGACTGTTGTTTC+AGG | - | chr8_2:47612989-47613008 | Msa1251490:three_prime_UTR | 45.0% |
GCCTGAAACAACAGTCTTCT+GGG | + | chr8_2:47612993-47613012 | None:intergenic | 45.0% | |
TGCCTGAAACAACAGTCTTC+TGG | + | chr8_2:47612994-47613013 | None:intergenic | 45.0% | |
AGGAAACACTTCCAGTGTGT+CGG | + | chr8_2:47613032-47613051 | None:intergenic | 45.0% | |
AGTGCCTAGGATGTTAACCT+AGG | - | chr8_2:47613120-47613139 | Msa1251490:three_prime_UTR | 45.0% | |
GTGCCTAGGATGTTAACCTA+GGG | - | chr8_2:47613121-47613140 | Msa1251490:three_prime_UTR | 45.0% | |
GCGATGCAGGCAAAATATAC+TGG | - | chr8_2:47613243-47613262 | Msa1251490:CDS | 45.0% | |
GAGAACCCTTGTACAGCAAA+TGG | - | chr8_2:47613354-47613373 | Msa1251490:intron | 45.0% | |
!! | CCAGTTCCATTTGCTGTACA+AGG | + | chr8_2:47613363-47613382 | None:intergenic | 45.0% |
CCTTGTACAGCAAATGGAAC+TGG | - | chr8_2:47613360-47613379 | Msa1251490:intron | 45.0% | |
TGTTCTACTTACTTGGCAGC+TGG | + | chr8_2:47613408-47613427 | None:intergenic | 45.0% | |
GCTACTAGGGAGTAAAGAGA+CGG | - | chr8_2:47613512-47613531 | Msa1251490:intron | 45.0% | |
TACGACAGAGCACAAGTTGT+TGG | - | chr8_2:47613720-47613739 | Msa1251490:intron | 45.0% | |
ACAGAGCACAAGTTGTTGGT+TGG | - | chr8_2:47613724-47613743 | Msa1251490:intron | 45.0% | |
TGCAGCTGCACTATTTGTGA+AGG | - | chr8_2:47613824-47613843 | Msa1251490:intron | 45.0% | |
TCACTCAACATTTCTCTCCC+TGG | + | chr8_2:47614116-47614135 | None:intergenic | 45.0% | |
CCACATATTCAGAACCATGC+AGG | + | chr8_2:47614157-47614176 | None:intergenic | 45.0% | |
!! | CCTGCATGGTTCTGAATATG+TGG | - | chr8_2:47614154-47614173 | Msa1251490:CDS | 45.0% |
TGCTTGTAGGAGATGTACCA+TGG | - | chr8_2:47614207-47614226 | Msa1251490:intron | 45.0% | |
GCTTGTAGGAGATGTACCAT+GGG | - | chr8_2:47614208-47614227 | Msa1251490:intron | 45.0% | |
AACATGCTTGTGCAACCCTT+TGG | - | chr8_2:47614360-47614379 | Msa1251490:intron | 45.0% | |
ACATGCTTGTGCAACCCTTT+GGG | - | chr8_2:47614361-47614380 | Msa1251490:intron | 45.0% | |
! | GGTTCTGATGCAATTGGCTT+AGG | - | chr8_2:47614916-47614935 | Msa1251490:CDS | 45.0% |
ACATATCGACCCAGATTCGA+CGG | + | chr8_2:47615020-47615039 | None:intergenic | 45.0% | |
TTCTTCTCTTTGCAGCTCCA+AGG | - | chr8_2:47615777-47615796 | Msa1251490:CDS | 45.0% | |
TCTTCTCTTTGCAGCTCCAA+GGG | - | chr8_2:47615778-47615797 | Msa1251490:CDS | 45.0% | |
!! | TTTATATATTGTATATTAAA+TGG | - | chr8_2:47614389-47614408 | Msa1251490:intron | 5.0% |
AAGGCGACAGAGTTAAGGCT+CGG | - | chr8_2:47612848-47612867 | Msa1251490:three_prime_UTR | 50.0% | |
TGGATCTCAGTCGCCTGAAA+GGG | - | chr8_2:47612877-47612896 | Msa1251490:three_prime_UTR | 50.0% | |
CTAGGAAGCAAAGGGAAGAG+CGG | + | chr8_2:47612947-47612966 | None:intergenic | 50.0% | |
! | AAGAGGTTTTGCCGACACAC+TGG | - | chr8_2:47613018-47613037 | Msa1251490:three_prime_UTR | 50.0% |
!! | CACACTGGAAGTGTTTCCTG+AGG | - | chr8_2:47613033-47613052 | Msa1251490:three_prime_UTR | 50.0% |
! | GTAGTAGGTTGAGCTCCAGA+AGG | + | chr8_2:47613303-47613322 | None:intergenic | 50.0% |
GACGAAGTGGATGGAAAACC+TGG | - | chr8_2:47613801-47613820 | Msa1251490:intron | 50.0% | |
ACAAATAGTGCAGCTGCACC+AGG | + | chr8_2:47613822-47613841 | None:intergenic | 50.0% | |
TGGATGGCGCTCCTTATCTT+AGG | - | chr8_2:47613853-47613872 | Msa1251490:intron | 50.0% | |
TGGCGCTCCTTATCTTAGGA+AGG | - | chr8_2:47613857-47613876 | Msa1251490:intron | 50.0% | |
TACACTCGATGCACCTCATC+AGG | - | chr8_2:47614068-47614087 | Msa1251490:intron | 50.0% | |
TGCACCTCATCAGGTCAATG+TGG | - | chr8_2:47614077-47614096 | Msa1251490:intron | 50.0% | |
CGAACCACATTGACCTGATG+AGG | + | chr8_2:47614084-47614103 | None:intergenic | 50.0% | |
TCAGGTCAATGTGGTTCGCA+TGG | - | chr8_2:47614086-47614105 | Msa1251490:intron | 50.0% | |
GATGGTGACTGGATGCTTGT+AGG | - | chr8_2:47614194-47614213 | Msa1251490:intron | 50.0% | |
CATGCTTGTGCAACCCTTTG+GGG | - | chr8_2:47614362-47614381 | Msa1251490:intron | 50.0% | |
! | CTGGATTTTTCCATGGCCCT+TGG | + | chr8_2:47615797-47615816 | None:intergenic | 50.0% |
CAAGGGCCATGGAAAAATCC+AGG | - | chr8_2:47615795-47615814 | Msa1251490:CDS | 50.0% | |
! | CCTGCTCCTGGATTTTTCCA+TGG | + | chr8_2:47615804-47615823 | None:intergenic | 50.0% |
CCATGGAAAAATCCAGGAGC+AGG | - | chr8_2:47615801-47615820 | Msa1251490:intron | 50.0% | |
! | ATCTATCTAGCTCCTGCTCC+TGG | + | chr8_2:47615816-47615835 | None:intergenic | 50.0% |
GAGTTAAGGCTCGGACTTCC+TGG | - | chr8_2:47612857-47612876 | Msa1251490:three_prime_UTR | 55.0% | |
CTTTCAGGCGACTGAGATCC+AGG | + | chr8_2:47612878-47612897 | None:intergenic | 55.0% | |
CTGGATCTCAGTCGCCTGAA+AGG | - | chr8_2:47612876-47612895 | Msa1251490:three_prime_UTR | 55.0% | |
CTGCTTTCGCCAAGACCTTC+TGG | - | chr8_2:47613285-47613304 | Msa1251490:intron | 55.0% | |
GGTTGAGCTCCAGAAGGTCT+TGG | + | chr8_2:47613297-47613316 | None:intergenic | 55.0% | |
CAAGGTCAGACGACAGTTCC+TGG | + | chr8_2:47613908-47613927 | None:intergenic | 55.0% | |
GGAACTGGAGCTCCCATCAG+TGG | - | chr8_2:47613375-47613394 | Msa1251490:intron | 60.0% | |
GCTGGTGCACTGCCACTGAT+GGG | + | chr8_2:47613390-47613409 | None:intergenic | 60.0% | |
AGCTGGTGCACTGCCACTGA+TGG | + | chr8_2:47613391-47613410 | None:intergenic | 60.0% | |
TGTGGTTCGCATGGAGCTCC+AGG | - | chr8_2:47614095-47614114 | Msa1251490:intron | 60.0% | |
GTGGTTCGCATGGAGCTCCA+GGG | - | chr8_2:47614096-47614115 | Msa1251490:intron | 60.0% | |
CTTTGCAGCTCCAAGGGCCA+TGG | - | chr8_2:47615784-47615803 | Msa1251490:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 47612833 | 47616234 | 47612833 | ID=Msa1251490;Name=Msa1251490 |
chr8_2 | mRNA | 47612833 | 47616234 | 47612833 | ID=Msa1251490-mRNA-1;Parent=Msa1251490;Name=Msa1251490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.8|0.5|1|1|1|6|405|276 |
chr8_2 | exon | 47612833 | 47613275 | 47612833 | ID=Msa1251490-mRNA-1:exon:14397;Parent=Msa1251490-mRNA-1 |
chr8_2 | exon | 47614130 | 47614191 | 47614130 | ID=Msa1251490-mRNA-1:exon:14396;Parent=Msa1251490-mRNA-1 |
chr8_2 | exon | 47614836 | 47614977 | 47614836 | ID=Msa1251490-mRNA-1:exon:14395;Parent=Msa1251490-mRNA-1 |
chr8_2 | exon | 47615113 | 47615337 | 47615113 | ID=Msa1251490-mRNA-1:exon:14394;Parent=Msa1251490-mRNA-1 |
chr8_2 | exon | 47615674 | 47615815 | 47615674 | ID=Msa1251490-mRNA-1:exon:14393;Parent=Msa1251490-mRNA-1 |
chr8_2 | exon | 47616013 | 47616234 | 47616013 | ID=Msa1251490-mRNA-1:exon:14392;Parent=Msa1251490-mRNA-1 |
chr8_2 | CDS | 47616013 | 47616234 | 47616013 | ID=Msa1251490-mRNA-1:cds;Parent=Msa1251490-mRNA-1 |
chr8_2 | CDS | 47615674 | 47615815 | 47615674 | ID=Msa1251490-mRNA-1:cds;Parent=Msa1251490-mRNA-1 |
chr8_2 | CDS | 47615113 | 47615337 | 47615113 | ID=Msa1251490-mRNA-1:cds;Parent=Msa1251490-mRNA-1 |
chr8_2 | CDS | 47614836 | 47614977 | 47614836 | ID=Msa1251490-mRNA-1:cds;Parent=Msa1251490-mRNA-1 |
chr8_2 | CDS | 47614130 | 47614191 | 47614130 | ID=Msa1251490-mRNA-1:cds;Parent=Msa1251490-mRNA-1 |
chr8_2 | CDS | 47613238 | 47613275 | 47613238 | ID=Msa1251490-mRNA-1:cds;Parent=Msa1251490-mRNA-1 |
chr8_2 | three_prime_UTR | 47612833 | 47613237 | 47612833 | ID=Msa1251490-mRNA-1:three_prime_utr;Parent=Msa1251490-mRNA-1 |
Gene Sequence |
Protein sequence |