AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1224840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224840 MtrunA17_Chr8g0380511 99.760 416 1 0 1 416 1 416 0.0 868
Msa1224840 MtrunA17_Chr2g0309251 76.166 386 88 3 33 415 41 425 0.0 612
Msa1224840 MtrunA17_Chr7g0274951 59.278 388 149 7 36 415 53 439 5.27e-173 491
Msa1224840 MtrunA17_Chr1g0189961 58.942 397 145 6 36 415 55 450 1.20e-170 485
Msa1224840 MtrunA17_Chr8g0368161 56.443 388 144 5 32 415 81 447 1.88e-157 451
Msa1224840 MtrunA17_Chr5g0413131 55.238 420 159 7 7 415 61 462 3.51e-156 449
Msa1224840 MtrunA17_Chr3g0117271 55.906 381 149 7 36 415 133 495 3.27e-154 445
Msa1224840 MtrunA17_Chr4g0058771 56.168 381 149 7 36 415 117 480 6.37e-154 444
Msa1224840 MtrunA17_Chr2g0314461 50.765 392 155 9 32 415 44 405 4.15e-130 380
Msa1224840 MtrunA17_Chr8g0368241 49.610 385 175 6 32 415 47 413 4.30e-130 380
Msa1224840 MtrunA17_Chr2g0314451 50.000 380 166 8 37 415 48 404 9.08e-127 372
Msa1224840 MtrunA17_Chr2g0314471 49.870 385 169 8 32 415 44 405 1.04e-125 369
Msa1224840 MtrunA17_Chr6g0453411 42.593 378 186 9 53 413 8 371 4.43e-104 313
Msa1224840 MtrunA17_Chr8g0368201 47.077 325 138 7 111 415 9 319 1.09e-101 305
Msa1224840 MtrunA17_Chr8g0368291 39.767 430 205 12 7 415 8 404 1.35e-99 302
Msa1224840 MtrunA17_Chr3g0135381 39.100 422 237 7 1 411 20 432 3.61e-99 304
Msa1224840 MtrunA17_Chr3g0135371 40.052 387 213 7 36 411 51 429 4.95e-95 291
Msa1224840 MtrunA17_Chr2g0326371 52.667 300 123 8 120 415 75 359 8.05e-94 286
Msa1224840 MtrunA17_Chr8g0368341 42.308 364 175 9 54 415 4 334 1.55e-90 277
Msa1224840 MtrunA17_Chr8g0368181 59.067 193 77 1 223 415 2 192 6.41e-79 242
Msa1224840 MtrunA17_Chr3g0135401 40.062 322 176 5 105 412 28 346 1.02e-76 242
Msa1224840 MtrunA17_Chr8g0368221 45.263 285 121 8 7 290 8 258 2.61e-74 233
Msa1224840 MtrunA17_Chr1g0151871 37.695 321 178 6 98 415 25 326 2.75e-71 227
Msa1224840 MtrunA17_Chr3g0129891 48.214 224 108 4 193 415 163 379 4.27e-69 223
Msa1224840 MtrunA17_Chr3g0129891 56.075 107 37 3 41 146 86 183 5.39e-26 108
Msa1224840 MtrunA17_Chr8g0368361 50.256 195 93 4 223 415 2 194 8.11e-67 211
Msa1224840 MtrunA17_Chr8g0368331 40.072 277 133 5 168 415 13 285 3.07e-66 213
Msa1224840 MtrunA17_Chr8g0368281 48.205 195 99 2 223 416 2 195 2.86e-60 194
Msa1224840 MtrunA17_Chr3g0138811 30.751 413 235 18 8 413 19 387 6.51e-58 194
Msa1224840 MtrunA17_Chr3g0135431 31.429 385 177 10 5 312 12 386 1.39e-54 186
Msa1224840 MtrunA17_Chr3g0135441 37.603 242 120 7 176 411 10 226 4.65e-50 169
Msa1224840 MtrunA17_Chr8g0368351 41.558 231 99 6 7 224 41 248 9.85e-49 166
Msa1224840 MtrunA17_Chr2g0302691 33.067 375 202 16 51 415 37 372 2.41e-48 169
Msa1224840 MtrunA17_Chr8g0339871 40.244 246 133 11 178 415 2 241 3.28e-44 154
Msa1224840 MtrunA17_Chr8g0368231 58.730 126 49 3 291 415 8 131 4.04e-44 150
Msa1224840 MtrunA17_Chr8g0368261 53.077 130 52 3 290 415 4 128 6.93e-41 141
Msa1224840 MtrunA17_Chr8g0368381 49.153 118 58 2 223 339 2 118 3.99e-37 131
Msa1224840 MtrunA17_Chr8g0391201 36.735 245 139 13 179 415 3 239 7.70e-37 134
Msa1224840 MtrunA17_Chr8g0368171 34.802 227 99 8 10 224 15 204 1.81e-31 119
Msa1224840 MtrunA17_Chr5g0445181 27.246 345 186 11 8 352 19 298 5.77e-31 120
Msa1224840 MtrunA17_Chr3g0135451 39.103 156 81 4 5 146 4 159 6.59e-28 109
Msa1224840 MtrunA17_Chr2g0302651 33.778 225 114 11 201 415 1 200 9.02e-26 103
Msa1224840 MtrunA17_Chr8g0353931 30.222 225 124 8 9 224 3 203 3.81e-23 96.7
Msa1224840 MtrunA17_Chr8g0368271 45.045 111 51 3 37 146 52 153 2.23e-21 91.3
Msa1224840 MtrunA17_Chr8g0353941 33.158 190 116 6 228 413 1 183 3.13e-21 90.5
Msa1224840 MtrunA17_Chr8g0353971 32.558 172 107 4 243 410 4 170 3.56e-21 90.1
Msa1224840 MtrunA17_Chr8g0353961 34.815 135 72 3 9 137 3 127 8.92e-21 88.6
Msa1224840 MtrunA17_Chr8g0368321 44.737 114 48 4 34 146 43 142 1.18e-20 89.0
Msa1224840 MtrunA17_Chr5g0426971 29.508 244 137 9 176 413 46 260 6.64e-19 85.9
Msa1224840 MtrunA17_Chr5g0434771 33.125 160 98 5 236 393 12 164 2.46e-18 82.4
Msa1224840 MtrunA17_Chr5g0443801 36.364 110 68 2 179 288 22 129 1.01e-14 72.0
Msa1224840 MtrunA17_Chr3g0135411 46.053 76 36 1 9 84 42 112 1.28e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224840 AT3G13510.1 81.481 405 74 1 11 415 15 418 0.0 707
Msa1224840 AT1G55360.1 81.818 407 71 3 10 415 17 421 0.0 699
Msa1224840 AT5G56530.2 78.133 407 87 2 10 416 16 420 0.0 676
Msa1224840 AT5G56530.1 78.133 407 87 2 10 416 16 420 0.0 676
Msa1224840 AT2G44210.1 61.408 412 154 5 7 415 5 414 0.0 543
Msa1224840 AT2G44210.2 57.466 442 153 6 7 415 5 444 0.0 530
Msa1224840 AT5G18460.1 58.168 404 157 7 20 415 30 429 4.70e-167 476
Msa1224840 AT1G10750.1 59.474 380 135 6 37 415 105 466 7.47e-164 469
Msa1224840 AT1G23340.2 54.808 416 162 7 8 415 11 408 4.58e-162 462
Msa1224840 AT1G23340.1 54.808 416 162 7 8 415 11 408 4.58e-162 462
Msa1224840 AT1G70550.1 57.105 380 144 6 37 415 103 464 1.93e-158 455
Msa1224840 AT5G50150.1 55.469 384 147 5 36 415 56 419 3.52e-156 447
Msa1224840 AT2G44220.1 49.510 408 189 6 13 415 7 402 2.63e-151 434
Msa1224840 AT2G44240.1 46.602 412 204 7 5 415 5 401 4.48e-133 388
Msa1224840 AT2G17750.1 44.608 408 213 7 9 416 2 396 2.49e-130 381
Msa1224840 AT2G19360.1 46.838 427 197 8 7 415 11 425 1.06e-129 380
Msa1224840 AT2G44250.1 45.803 417 202 10 9 415 6 408 3.03e-121 358
Msa1224840 AT3G48230.1 46.997 383 174 12 41 415 11 372 3.25e-114 339
Msa1224840 AT5G19170.1 43.716 366 181 7 48 410 22 365 1.22e-99 302
Msa1224840 AT1G23340.3 52.234 291 114 6 8 290 11 284 1.13e-98 296
Msa1224840 AT2G44250.2 46.774 310 158 6 109 415 20 325 1.59e-93 285
Msa1224840 AT5G25950.1 41.542 402 202 9 35 415 42 431 1.40e-92 286
Msa1224840 AT2G20170.1 38.741 413 226 13 5 410 4 396 3.95e-89 276
Msa1224840 AT2G20170.2 38.741 413 226 13 5 410 4 396 3.95e-89 276
Msa1224840 AT5G25960.1 38.293 410 191 10 12 415 3 356 1.17e-78 247
Msa1224840 AT2G20170.3 35.835 413 221 13 5 410 4 379 1.23e-77 246
Msa1224840 AT4G23390.1 36.650 412 228 14 9 410 9 397 9.19e-74 236
Msa1224840 AT4G23370.1 35.835 413 235 17 9 410 8 401 1.47e-71 231
Msa1224840 AT4G23380.1 32.767 412 246 11 7 410 10 398 1.50e-69 225
Msa1224840 AT4G23350.1 33.679 386 228 11 33 410 35 400 5.86e-67 219
Msa1224840 AT1G70550.2 52.913 206 79 5 37 241 103 291 2.56e-66 213
Msa1224840 AT4G23355.1 34.884 387 220 13 33 410 35 398 6.17e-66 216
Msa1224840 AT4G23365.1 34.278 388 221 13 33 410 35 398 2.36e-65 214
Msa1224840 AT4G23360.1 32.474 388 229 12 33 410 35 399 4.38e-60 201
Msa1224840 AT1G10750.2 44.635 233 106 7 37 265 105 318 5.74e-57 191
Msa1224840 AT2G35250.1 34.072 361 189 11 58 413 24 340 3.85e-54 183
Msa1224840 AT1G10190.1 32.458 419 236 18 9 410 6 394 4.75e-51 177
Msa1224840 AT4G15050.1 33.249 394 214 19 33 410 34 394 5.99e-50 174
Msa1224840 AT4G15053.1 30.361 415 253 15 9 410 10 401 2.02e-49 172
Msa1224840 AT4G10220.1 28.873 426 255 16 1 410 5 398 1.07e-44 160
Msa1224840 AT4G17505.1 29.891 368 185 11 49 410 18 318 8.24e-43 153
Msa1224840 AT2G27320.1 34.385 317 158 13 60 371 30 301 3.75e-42 151
Msa1224840 AT5G25410.1 28.032 371 227 14 45 410 28 363 2.72e-41 150
Msa1224840 AT4G23373.1 31.359 287 159 8 9 293 8 258 5.12e-41 147
Msa1224840 AT2G24950.1 31.008 387 225 17 35 410 54 409 2.44e-40 149
Msa1224840 AT5G60380.1 28.533 375 218 13 48 410 31 367 9.69e-40 146
Msa1224840 AT5G05030.1 28.232 379 222 16 45 413 22 360 2.08e-37 139
Msa1224840 AT5G46820.1 27.005 374 229 13 48 410 7 347 5.48e-36 135
Msa1224840 AT5G46810.1 26.389 360 234 10 61 410 11 349 3.82e-35 133
Msa1224840 AT4G10210.1 29.471 397 222 18 1 374 5 366 3.14e-34 131
Msa1224840 AT5G46200.1 25.450 389 237 12 61 410 31 405 1.61e-32 127
Msa1224840 AT4G23080.1 28.037 428 254 17 5 412 13 406 1.74e-32 127
Msa1224840 AT4G17860.1 28.610 367 201 17 61 410 29 351 1.74e-32 126
Msa1224840 AT2G38255.1 33.945 218 106 7 61 277 14 194 4.35e-31 119
Msa1224840 AT5G11660.1 30.464 302 183 11 118 413 25 305 6.11e-30 118
Msa1224840 AT5G25415.1 29.927 274 169 10 151 413 72 333 9.70e-25 104
Msa1224840 AT2G03930.2 40.708 113 65 2 147 257 22 134 3.48e-23 95.9
Msa1224840 AT5G36680.1 29.461 241 141 8 118 354 51 266 3.41e-21 94.4
Msa1224840 AT5G36770.1 29.461 241 141 8 118 354 51 266 3.41e-21 94.4
Msa1224840 AT5G37520.1 35.393 178 97 9 240 411 33 198 3.80e-18 82.8
Msa1224840 AT5G04937.1 29.442 197 113 8 220 410 22 198 1.72e-17 80.9

Find 129 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCTTCCATATCTTT+TGG 0.227365 8_1:+89943498 None:intergenic
TTGTCTCAGATTTGGGTATT+AGG 0.229770 8_1:-89943053 Msa1224840:CDS
GGGCACTGGTGGATGCAATT+TGG 0.251775 8_1:-89941794 Msa1224840:CDS
AGCATGCCATAGTTGATTAA+TGG 0.268560 8_1:+89943594 None:intergenic
TCATTAGTCTGCTGTATCTT+TGG 0.288635 8_1:+89943083 None:intergenic
GTTATTGTAGTTATGGGTTG+TGG 0.295012 8_1:-89944615 Msa1224840:exon
AGTTCAGTTTGTCTCAGATT+TGG 0.300318 8_1:-89943061 Msa1224840:CDS
TTGGCAAAGCAAGTTACTTT+AGG 0.304436 8_1:-89941610 Msa1224840:CDS
CCTCAAAGATCACAAAATTC+AGG 0.306215 8_1:-89943802 Msa1224840:intron
TCCTCCTTTGTTCTCCTAAT+AGG 0.309052 8_1:+89943544 None:intergenic
GTATATCCAAGCAACCTTAA+AGG 0.309448 8_1:-89944699 Msa1224840:five_prime_UTR
GAATCTCGGTATGAAGAAAT+TGG 0.312780 8_1:+89942628 None:intergenic
GAGGGAGAGGAGGGGTCATT+AGG 0.313158 8_1:-89944729 Msa1224840:five_prime_UTR
GGCACTGGTGGATGCAATTT+GGG 0.316794 8_1:-89941793 Msa1224840:CDS
CAAAAGCTACAATAAATGTT+TGG 0.320541 8_1:-89943109 Msa1224840:CDS
CACTTCTCCACTTGCTTACA+TGG 0.336372 8_1:+89941254 None:intergenic
ATCCACCAGTGCCCCTCTTT+CGG 0.340644 8_1:+89941803 None:intergenic
GTGTAAGTGCCAAGTCCTTT+TGG 0.343032 8_1:+89941548 None:intergenic
CCGAAGGCACGATACCTATT+AGG 0.344482 8_1:-89943558 Msa1224840:CDS
GCAAGTTCAGCCAAAAGATA+TGG 0.346818 8_1:-89943508 Msa1224840:CDS
AGTCCTTCAGGATGGAAATT+AGG 0.348598 8_1:+89943664 None:intergenic
GAAGAGTGTTATTGTAGTTA+TGG 0.361509 8_1:-89944622 Msa1224840:exon
ACGATATCAGCATACTTATC+TGG 0.363458 8_1:-89942600 Msa1224840:CDS
GCATGCCATAGTTGATTAAT+GGG 0.363855 8_1:+89943595 None:intergenic
TGCTACAATCTTCTTTGCTC+AGG 0.364167 8_1:-89942697 Msa1224840:CDS
GTTCAGTTTGTCTCAGATTT+GGG 0.365560 8_1:-89943060 Msa1224840:CDS
AAGAGTGTTATTGTAGTTAT+GGG 0.367467 8_1:-89944621 Msa1224840:exon
AACCTCCCTTTAAGGTTGCT+TGG 0.369446 8_1:+89944693 None:intergenic
GCTTTGCCAAATCCTTCTTC+AGG 0.373471 8_1:+89941623 None:intergenic
GTTGAAGGAGATAAGTTCTA+TGG 0.379108 8_1:-89943134 Msa1224840:CDS
TGTTTCTCCACTTCTCCCTA+TGG 0.381521 8_1:-89941171 Msa1224840:three_prime_UTR
GTTTGAACATCATAACAGTT+TGG 0.388940 8_1:+89941518 None:intergenic
AACAGGTAGTAATGGAGATT+GGG 0.389158 8_1:-89941498 Msa1224840:CDS
TCAACACACTTCAACTCAAA+TGG 0.390051 8_1:-89941660 Msa1224840:CDS
GTACTCCCATTAATCAACTA+TGG 0.390179 8_1:-89943600 Msa1224840:CDS
TTGTTATCACCGTATAAATC+TGG 0.391554 8_1:+89942886 None:intergenic
GCCTCCAGTCAAAACCATTC+AGG 0.391742 8_1:-89944466 Msa1224840:intron
AAGGTACCGTGTTGGGATAT+TGG 0.402079 8_1:-89941766 Msa1224840:CDS
CCACTCTGGTTAACCAAATC+AGG 0.405418 8_1:+89943442 None:intergenic
TCTCAAAAGGCTGAAGAAAC+AGG 0.406561 8_1:-89941221 Msa1224840:three_prime_UTR
GGGAATCAAGGTACCGTGTT+GGG 0.409522 8_1:-89941773 Msa1224840:CDS
AAAAGCTACAATAAATGTTT+GGG 0.411915 8_1:-89943108 Msa1224840:CDS
AAAGCTGGTTGCTTTGAAAC+AGG 0.418938 8_1:+89943837 None:intergenic
TATATCCAAGCAACCTTAAA+GGG 0.419344 8_1:-89944698 Msa1224840:five_prime_UTR
TGGGTATTAGGAGGTTCATT+TGG 0.423183 8_1:-89943041 Msa1224840:CDS
CAGGTTAGTCCAGATTTATA+CGG 0.425230 8_1:-89942895 Msa1224840:CDS
GAGGTCAGCAGAGCCTGATT+TGG 0.425485 8_1:-89943455 Msa1224840:CDS
TTATTGTAGTTATGGGTTGT+GGG 0.430756 8_1:-89944614 Msa1224840:exon
AAACAGGTAGTAATGGAGAT+TGG 0.437514 8_1:-89941499 Msa1224840:CDS
GGTTAACCAGAGTGGTCATC+AGG 0.443209 8_1:-89943434 Msa1224840:intron
TACAAAGATTGAAGAGAAGA+AGG 0.446224 8_1:+89941351 None:intergenic
GTTGAAGTGTGTTGACCATC+AGG 0.447345 8_1:+89941668 None:intergenic
AATCAACTATGGCATGCTAA+TGG 0.448204 8_1:-89943589 Msa1224840:CDS
CCTAATAGGTATCGTGCCTT+CGG 0.450371 8_1:+89943558 None:intergenic
AGGAGGGGTCATTAGGAAGA+AGG 0.450470 8_1:-89944722 Msa1224840:five_prime_UTR
GTCCTCCATAGTAAAAGAAA+TGG 0.450774 8_1:+89941474 None:intergenic
AACTGTTATGATGTTCAAAC+AGG 0.450985 8_1:-89941515 Msa1224840:CDS
CTCAAAGCTCCAAAAGGACT+TGG 0.453716 8_1:-89941557 Msa1224840:CDS
GTTTCTCCACTTCTCCCTAT+GGG 0.453996 8_1:-89941170 Msa1224840:three_prime_UTR
GTAGTTATGGGTTGTGGGTG+TGG 0.459452 8_1:-89944609 Msa1224840:exon
ACAGTGCTACCATGATTGAA+TGG 0.461086 8_1:-89941715 Msa1224840:CDS
TAAGTATGCTGATATCGTAC+TGG 0.467752 8_1:+89942605 None:intergenic
CAGTGCTACCATGATTGAAT+GGG 0.467794 8_1:-89941714 Msa1224840:CDS
CAGCATTGAAGCTGGCTGGC+AGG 0.476183 8_1:-89943006 Msa1224840:intron
GGATTTATAATAACACTACT+AGG 0.487493 8_1:+89941372 None:intergenic
GTGTGGTCAAGTTTCTCAAA+AGG 0.503940 8_1:-89941234 Msa1224840:three_prime_UTR
CAACACACTTCAACTCAAAT+GGG 0.505639 8_1:-89941659 Msa1224840:CDS
AATAATCTCAAAGCTCCAAA+AGG 0.510898 8_1:-89941563 Msa1224840:CDS
CAATCTATAATATCCCCATC+TGG 0.512044 8_1:+89943864 None:intergenic
GATGTTCAAACAGGTAGTAA+TGG 0.513582 8_1:-89941506 Msa1224840:CDS
GGAGGGGTCATTAGGAAGAA+GGG 0.515428 8_1:-89944721 Msa1224840:five_prime_UTR
AGGAAAGGATGATCAAAAGC+TGG 0.517532 8_1:+89943822 None:intergenic
TGGATGCAATTTGGGAATCA+AGG 0.519819 8_1:-89941785 Msa1224840:CDS
TTGTTGTTGCAGAGTCCAGA+TGG 0.520508 8_1:-89943879 Msa1224840:intron
CATGCGATAGCATATGTTGA+AGG 0.521399 8_1:-89943149 Msa1224840:CDS
TCTTCTTCAACTAGGCTTGG+TGG 0.522808 8_1:-89944537 Msa1224840:CDS
GCGTCTTCTTCAACTAGGCT+TGG 0.527608 8_1:-89944540 Msa1224840:CDS
AGTGATGCATATCAAGCTAC+TGG 0.528855 8_1:-89942721 Msa1224840:CDS
TTCTCCTCCCCATTCAATCA+TGG 0.529304 8_1:+89941706 None:intergenic
ACACGAGGCTATTCACCTAC+TGG 0.530474 8_1:-89942864 Msa1224840:CDS
GATCTTAACAGCATTGAAGC+TGG 0.532791 8_1:-89943014 Msa1224840:CDS
TCTCAGATTTGGGTATTAGG+AGG 0.536286 8_1:-89943050 Msa1224840:CDS
GTCAGCAGTGACATAGCAAT+GGG 0.541992 8_1:-89942664 Msa1224840:CDS
CTCATTGTAGGATCCGAAAG+AGG 0.542095 8_1:-89941816 Msa1224840:intron
TCTCAGCGTCTTCTTCAACT+AGG 0.544269 8_1:-89944545 Msa1224840:CDS
TGGTTCAAGACAGAAGTTTG+AGG 0.544700 8_1:-89944517 Msa1224840:CDS
TGTTGTTGCAGAGTCCAGAT+GGG 0.553616 8_1:-89943878 Msa1224840:intron
AGGATCCGAAAGAGGGGCAC+TGG 0.555253 8_1:-89941808 Msa1224840:CDS
ATCCGAAAGAGGGGCACTGG+TGG 0.556202 8_1:-89941805 Msa1224840:CDS
AAATATGAGAACAAGAAAGA+TGG 0.557574 8_1:+89941743 None:intergenic
CAATGCTTAGTAAGAGTGAG+TGG 0.560405 8_1:-89944814 Msa1224840:five_prime_UTR
TTAACAGCATTGAAGCTGGC+TGG 0.562128 8_1:-89943010 Msa1224840:CDS
AACACTCCCATAGGGAGAAG+TGG 0.567702 8_1:+89941164 None:intergenic
AGATTCTCCATGTAAGCAAG+TGG 0.578095 8_1:-89941261 Msa1224840:three_prime_UTR
AGTCAGCAGTGACATAGCAA+TGG 0.582074 8_1:-89942665 Msa1224840:CDS
TCATTGTAGGATCCGAAAGA+GGG 0.582114 8_1:-89941815 Msa1224840:intron
AAAATCACATAACACTAACT+AGG 0.582767 8_1:+89941117 None:intergenic
TGGGAATCAAGGTACCGTGT+TGG 0.586975 8_1:-89941774 Msa1224840:CDS
AATGCTTAGTAAGAGTGAGT+GGG 0.591240 8_1:-89944813 Msa1224840:five_prime_UTR
AGACCTAATTTCCATCCTGA+AGG 0.592817 8_1:-89943667 Msa1224840:CDS
ACAGGTAGTAATGGAGATTG+GGG 0.600382 8_1:-89941497 Msa1224840:CDS
TGATATCGTACTGGGAATCT+CGG 0.601017 8_1:+89942614 None:intergenic
ACTTCAACTCAAATGGGAAG+TGG 0.607508 8_1:-89941653 Msa1224840:CDS
GCTAATGGTAAATGCTCCGA+AGG 0.608551 8_1:-89943574 Msa1224840:CDS
TTACTTTAGGAATATTCAAG+TGG 0.610068 8_1:-89941597 Msa1224840:CDS
AAAGAGGCTTACTGTCCAGT+AGG 0.611084 8_1:+89942849 None:intergenic
GTTGTTAATTCAGAGCCTGA+TGG 0.611724 8_1:-89941683 Msa1224840:CDS
TATCAGCATACTTATCTGGA+AGG 0.613773 8_1:-89942596 Msa1224840:intron
GGAGAAACAAATAAAATACA+AGG 0.614762 8_1:+89941185 None:intergenic
TATTAGGAGAACAAAGGAGG+AGG 0.617651 8_1:-89943542 Msa1224840:CDS
AAGTATGCTGATATCGTACT+GGG 0.623096 8_1:+89942606 None:intergenic
GAGAGAGAGAGGGAGAGGAG+GGG 0.627203 8_1:-89944737 Msa1224840:five_prime_UTR
GTCTTACCTGATGACCACTC+TGG 0.627576 8_1:+89943428 None:intergenic
ATCCAAGCAACCTTAAAGGG+AGG 0.627840 8_1:-89944695 Msa1224840:five_prime_UTR
GTTCAGCCAAAAGATATGGA+AGG 0.639850 8_1:-89943504 Msa1224840:CDS
ACAAGTCGTTCGCAAAGCCG+AGG 0.641777 8_1:-89943474 Msa1224840:CDS
ACCTATTAGGAGAACAAAGG+AGG 0.643991 8_1:-89943545 Msa1224840:CDS
AAATCAGGCTCTGCTGACCT+CGG 0.649895 8_1:+89943457 None:intergenic
CCTGATTTGGTTAACCAGAG+TGG 0.651457 8_1:-89943442 Msa1224840:CDS
ATGCTTAGTAAGAGTGAGTG+GGG 0.659197 8_1:-89944812 Msa1224840:five_prime_UTR
CATTGTAGGATCCGAAAGAG+GGG 0.663178 8_1:-89941814 Msa1224840:intron
GATACCTATTAGGAGAACAA+AGG 0.674157 8_1:-89943548 Msa1224840:CDS
GAGTGTTTGTCAAAATGCAA+TGG 0.684945 8_1:-89941148 Msa1224840:three_prime_UTR
TGTAAGCAAGTGGAGAAGTG+TGG 0.686259 8_1:-89941251 Msa1224840:three_prime_UTR
AGTGCTACCATGATTGAATG+GGG 0.694678 8_1:-89941713 Msa1224840:CDS
GCTACCATGATTGAATGGGG+AGG 0.698683 8_1:-89941710 Msa1224840:CDS
GTTGTTGCAGAGTCCAGATG+GGG 0.710931 8_1:-89943877 Msa1224840:intron
TATACGGTGATAACAACACG+AGG 0.745144 8_1:-89942879 Msa1224840:CDS
AGATGGCCAATATCCCAACA+CGG 0.758233 8_1:+89941760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATAATACAAGAAATTT+TGG + chr8_1:89943350-89943369 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAACTGT+CGG - chr8_1:89943584-89943603 Msa1224840:CDS 10.0%
!! TAAATTATAGCTAAAAAGAA+AGG + chr8_1:89941472-89941491 None:intergenic 15.0%
!! TTAGTAACTACTTAAAAATA+AGG + chr8_1:89941922-89941941 None:intergenic 15.0%
!!! TTTTTACTAACTTTATGTTT+TGG - chr8_1:89942210-89942229 Msa1224840:intron 15.0%
!! TAAAAAAAAAACAGTACATT+AGG + chr8_1:89943141-89943160 None:intergenic 15.0%
!!! TTTTTTTTTTTGACTAATAC+TGG + chr8_1:89943575-89943594 None:intergenic 15.0%
!!! TGAGTTTTTTTTTTTTTCTT+CGG + chr8_1:89943737-89943756 None:intergenic 15.0%
!! AAAAAAAAGGAGAAAAAAAA+AGG + chr8_1:89944588-89944607 None:intergenic 15.0%
!!! AAATACAAGGATTTTATAAA+GGG + chr8_1:89944716-89944735 None:intergenic 15.0%
!!! AAAATACAAGGATTTTATAA+AGG + chr8_1:89944717-89944736 None:intergenic 15.0%
!!! TTGTTCTTGTTTTTTGTTTA+TGG - chr8_1:89941333-89941352 Msa1224840:three_prime_UTR 20.0%
!!! TGTTCTTGTTTTTTGTTTAT+GGG - chr8_1:89941334-89941353 Msa1224840:three_prime_UTR 20.0%
!!! CAAAATAATACTATTTTCTG+TGG + chr8_1:89941555-89941574 None:intergenic 20.0%
!! CAAATTAAAGAAAGAAAGAA+AGG + chr8_1:89941598-89941617 None:intergenic 20.0%
!!! TTCTTTCTTTCTTTAATTTG+AGG - chr8_1:89941598-89941617 Msa1224840:CDS 20.0%
!!! TTTTTCAGTTCAAAATTGAA+TGG - chr8_1:89941657-89941676 Msa1224840:CDS 20.0%
!! AAAGTAGTTAAAGAAAAACT+GGG - chr8_1:89941863-89941882 Msa1224840:intron 20.0%
!! AAAAGCTACAATAAATGTTT+GGG - chr8_1:89942803-89942822 Msa1224840:intron 20.0%
!!! TAGAATTTGTTAGGAAAAAA+CGG + chr8_1:89942974-89942993 None:intergenic 20.0%
!! CGTAAAGATAATAATATTAG+CGG + chr8_1:89943838-89943857 None:intergenic 20.0%
!!! GAATTTTGTTTGTTAATCAT+AGG + chr8_1:89943912-89943931 None:intergenic 20.0%
! TTAGAAAAAAGTAGTGACTT+AGG - chr8_1:89941141-89941160 Msa1224840:three_prime_UTR 25.0%
!!! AAGAGTGTTATTGTAGTTAT+GGG - chr8_1:89941290-89941309 Msa1224840:three_prime_UTR 25.0%
!!! GTTCTTGTTTTTTGTTTATG+GGG - chr8_1:89941335-89941354 Msa1224840:three_prime_UTR 25.0%
! TATAATTTATTTCACCCCTT+TGG - chr8_1:89941483-89941502 Msa1224840:CDS 25.0%
! ACATAAGAAAATGTTCCAAA+GGG + chr8_1:89941501-89941520 None:intergenic 25.0%
! AACATAAGAAAATGTTCCAA+AGG + chr8_1:89941502-89941521 None:intergenic 25.0%
! TTCCATAAAACTCATCAAAA+GGG + chr8_1:89941821-89941840 None:intergenic 25.0%
! ATTCCATAAAACTCATCAAA+AGG + chr8_1:89941822-89941841 None:intergenic 25.0%
! GAAAGTAGTTAAAGAAAAAC+TGG - chr8_1:89941862-89941881 Msa1224840:intron 25.0%
!!! ACCATTTTAGTTTCTTCTTT+TGG - chr8_1:89942707-89942726 Msa1224840:CDS 25.0%
! ACCAAAAGAAGAAACTAAAA+TGG + chr8_1:89942711-89942730 None:intergenic 25.0%
! CAAAAGCTACAATAAATGTT+TGG - chr8_1:89942802-89942821 Msa1224840:intron 25.0%
! GTATCAAACATCATAACAAT+TGG + chr8_1:89943509-89943528 None:intergenic 25.0%
!!! TACTCGAAAGATTTTTTTAC+TGG - chr8_1:89943626-89943645 Msa1224840:CDS 25.0%
! AAATATGAGAACAAGAAAGA+TGG + chr8_1:89944171-89944190 None:intergenic 25.0%
!! TTACTTTAGGAATATTCAAG+TGG - chr8_1:89944314-89944333 Msa1224840:intron 25.0%
! GGATTTATAATAACACTACT+AGG + chr8_1:89944542-89944561 None:intergenic 25.0%
! GGAGAAACAAATAAAATACA+AGG + chr8_1:89944729-89944748 None:intergenic 25.0%
! AAAATCACATAACACTAACT+AGG + chr8_1:89944797-89944816 None:intergenic 25.0%
TATATCCAAGCAACCTTAAA+GGG - chr8_1:89941213-89941232 Msa1224840:three_prime_UTR 30.0%
AGAAAAAAAACCTCCCTTTA+AGG + chr8_1:89941229-89941248 None:intergenic 30.0%
!!! AAAGGGAGGTTTTTTTTCTT+AGG - chr8_1:89941230-89941249 Msa1224840:three_prime_UTR 30.0%
!!! AAGGGAGGTTTTTTTTCTTA+GGG - chr8_1:89941231-89941250 Msa1224840:three_prime_UTR 30.0%
!!! GTTTTTTTTCTTAGGGTTTG+TGG - chr8_1:89941238-89941257 Msa1224840:three_prime_UTR 30.0%
!! GAAGAGTGTTATTGTAGTTA+TGG - chr8_1:89941289-89941308 Msa1224840:three_prime_UTR 30.0%
! TTATTGTAGTTATGGGTTGT+GGG - chr8_1:89941297-89941316 Msa1224840:three_prime_UTR 30.0%
CATAAGAAAATGTTCCAAAG+GGG + chr8_1:89941500-89941519 None:intergenic 30.0%
!!! TTTTTTCCCCTTTCAATTGA+GGG + chr8_1:89941794-89941813 None:intergenic 30.0%
!!! TTTTTTTCCCCTTTCAATTG+AGG + chr8_1:89941795-89941814 None:intergenic 30.0%
CAATTGAAAGGGGAAAAAAA+AGG - chr8_1:89941795-89941814 Msa1224840:CDS 30.0%
TAGATAGATGATAGCAAGTT+TGG - chr8_1:89941956-89941975 Msa1224840:intron 30.0%
!! ATTTTGTGATCTTTGAGGAA+AGG + chr8_1:89942107-89942126 None:intergenic 30.0%
!! ACTTTTTGAGGAGAATAAGT+TGG - chr8_1:89942267-89942286 Msa1224840:intron 30.0%
AATCAAAACTGTATGCAGTT+CGG + chr8_1:89942624-89942643 None:intergenic 30.0%
! CTTCTTTTGGTCTAATTTTG+TGG - chr8_1:89942720-89942739 Msa1224840:CDS 30.0%
GGATTTCAATATCAAAACCA+GGG + chr8_1:89942953-89942972 None:intergenic 30.0%
! GCAAAGCATTAGAATTTGTT+AGG + chr8_1:89942983-89943002 None:intergenic 30.0%
CTTTGCTCTATATGATTAAC+AGG - chr8_1:89942997-89943016 Msa1224840:intron 30.0%
TTGTTATCACCGTATAAATC+TGG + chr8_1:89943028-89943047 None:intergenic 30.0%
AAACAAAAATGAAAGCCACA+AGG + chr8_1:89943095-89943114 None:intergenic 30.0%
!!! TTTTTTTGACTAATACTGGC+AGG + chr8_1:89943571-89943590 None:intergenic 30.0%
!!! AAAGATTTTTTTACTGGCAG+TGG - chr8_1:89943632-89943651 Msa1224840:CDS 30.0%
CCATGTCATGATAAAGAATT+TGG + chr8_1:89943705-89943724 None:intergenic 30.0%
CCAAATTCTTTATCATGACA+TGG - chr8_1:89943702-89943721 Msa1224840:intron 30.0%
! CTTTTCAAAGATCTATAAGG+TGG + chr8_1:89943766-89943785 None:intergenic 30.0%
! CGACTTTTCAAAGATCTATA+AGG + chr8_1:89943769-89943788 None:intergenic 30.0%
TTGAAGGACTATTAAGAATG+AGG + chr8_1:89943978-89943997 None:intergenic 30.0%
AACAGATATCACGATTTCAA+TGG + chr8_1:89944038-89944057 None:intergenic 30.0%
AATAATCTCAAAGCTCCAAA+AGG - chr8_1:89944348-89944367 Msa1224840:intron 30.0%
GTTTGAACATCATAACAGTT+TGG + chr8_1:89944396-89944415 None:intergenic 30.0%
AACTGTTATGATGTTCAAAC+AGG - chr8_1:89944396-89944415 Msa1224840:intron 30.0%
! TGACAATTTGCATTTTTACC+AGG + chr8_1:89944462-89944481 None:intergenic 30.0%
TACAAAGATTGAAGAGAAGA+AGG + chr8_1:89944563-89944582 None:intergenic 30.0%
!!! TTCTCCTTTTTTTTCTGTAG+TGG - chr8_1:89944594-89944613 Msa1224840:CDS 30.0%
CTTTCCACTACAGAAAAAAA+AGG + chr8_1:89944601-89944620 None:intergenic 30.0%
AATGCTTAGTAAGAGTGAGT+GGG - chr8_1:89941098-89941117 Msa1224840:three_prime_UTR 35.0%
GTATATCCAAGCAACCTTAA+AGG - chr8_1:89941212-89941231 Msa1224840:three_prime_UTR 35.0%
! GTTATTGTAGTTATGGGTTG+TGG - chr8_1:89941296-89941315 Msa1224840:three_prime_UTR 35.0%
CTAAAAAGAAAGGACCTGAA+TGG + chr8_1:89941462-89941481 None:intergenic 35.0%
GAGGTGATATGTTTCAGAAA+TGG - chr8_1:89941617-89941636 Msa1224840:CDS 35.0%
! TTTTTCCCCTTTCAATTGAG+GGG + chr8_1:89941793-89941812 None:intergenic 35.0%
CAATCTATAATATCCCCATC+TGG + chr8_1:89942050-89942069 None:intergenic 35.0%
! CCTGAATTTTGTGATCTTTG+AGG + chr8_1:89942112-89942131 None:intergenic 35.0%
CCTCAAAGATCACAAAATTC+AGG - chr8_1:89942109-89942128 Msa1224840:intron 35.0%
GTACTCCCATTAATCAACTA+TGG - chr8_1:89942311-89942330 Msa1224840:intron 35.0%
GCATGCCATAGTTGATTAAT+GGG + chr8_1:89942319-89942338 None:intergenic 35.0%
AGCATGCCATAGTTGATTAA+TGG + chr8_1:89942320-89942339 None:intergenic 35.0%
AATCAACTATGGCATGCTAA+TGG - chr8_1:89942322-89942341 Msa1224840:intron 35.0%
GATACCTATTAGGAGAACAA+AGG - chr8_1:89942363-89942382 Msa1224840:intron 35.0%
! CTTCTTCCTTCCATATCTTT+TGG + chr8_1:89942416-89942435 None:intergenic 35.0%
!!! CTGCATACAGTTTTGATTCA+TGG - chr8_1:89942626-89942645 Msa1224840:CDS 35.0%
! ACTTGTTGAACTGTTAGCTA+CGG - chr8_1:89942653-89942672 Msa1224840:CDS 35.0%
GTTGAAGGAGATAAGTTCTA+TGG - chr8_1:89942777-89942796 Msa1224840:intron 35.0%
! TCATTAGTCTGCTGTATCTT+TGG + chr8_1:89942831-89942850 None:intergenic 35.0%
AGTTCAGTTTGTCTCAGATT+TGG - chr8_1:89942850-89942869 Msa1224840:intron 35.0%
GTTCAGTTTGTCTCAGATTT+GGG - chr8_1:89942851-89942870 Msa1224840:intron 35.0%
TTGTCTCAGATTTGGGTATT+AGG - chr8_1:89942858-89942877 Msa1224840:intron 35.0%
AGAATCTCAAAACTAAACCC+TGG - chr8_1:89942933-89942952 Msa1224840:intron 35.0%
CGGATTTCAATATCAAAACC+AGG + chr8_1:89942954-89942973 None:intergenic 35.0%
! CAGGTTAGTCCAGATTTATA+CGG - chr8_1:89943016-89943035 Msa1224840:CDS 35.0%
GAATCTCGGTATGAAGAAAT+TGG + chr8_1:89943286-89943305 None:intergenic 35.0%
AAGTATGCTGATATCGTACT+GGG + chr8_1:89943308-89943327 None:intergenic 35.0%
TAAGTATGCTGATATCGTAC+TGG + chr8_1:89943309-89943328 None:intergenic 35.0%
ACGATATCAGCATACTTATC+TGG - chr8_1:89943311-89943330 Msa1224840:intron 35.0%
TATCAGCATACTTATCTGGA+AGG - chr8_1:89943315-89943334 Msa1224840:intron 35.0%
TCATATACCAGACACATAGT+TGG + chr8_1:89943430-89943449 None:intergenic 35.0%
TTGAAAGAATCCAAGCACTT+GGG + chr8_1:89943470-89943489 None:intergenic 35.0%
TTTGAAAGAATCCAAGCACT+TGG + chr8_1:89943471-89943490 None:intergenic 35.0%
! TCGTGATATTTGCTAGTAGT+AGG - chr8_1:89943938-89943957 Msa1224840:intron 35.0%
! CGTGATATTTGCTAGTAGTA+GGG - chr8_1:89943939-89943958 Msa1224840:intron 35.0%
ACTATTAAGAATGAGGTCGA+TGG + chr8_1:89943971-89943990 None:intergenic 35.0%
ACGATTTCAATGGTCTATGA+AGG + chr8_1:89944028-89944047 None:intergenic 35.0%
TCAACACACTTCAACTCAAA+TGG - chr8_1:89944251-89944270 Msa1224840:intron 35.0%
CAACACACTTCAACTCAAAT+GGG - chr8_1:89944252-89944271 Msa1224840:intron 35.0%
! CATTTTCCTGAAGAAGGATT+TGG - chr8_1:89944282-89944301 Msa1224840:intron 35.0%
! TTGGCAAAGCAAGTTACTTT+AGG - chr8_1:89944301-89944320 Msa1224840:intron 35.0%
GATGTTCAAACAGGTAGTAA+TGG - chr8_1:89944405-89944424 Msa1224840:intron 35.0%
! AAACAGGTAGTAATGGAGAT+TGG - chr8_1:89944412-89944431 Msa1224840:intron 35.0%
! AACAGGTAGTAATGGAGATT+GGG - chr8_1:89944413-89944432 Msa1224840:intron 35.0%
GTCCTCCATAGTAAAAGAAA+TGG + chr8_1:89944440-89944459 None:intergenic 35.0%
! TTTTGACAAACACTCCCATA+GGG + chr8_1:89944758-89944777 None:intergenic 35.0%
!! ATTTTGACAAACACTCCCAT+AGG + chr8_1:89944759-89944778 None:intergenic 35.0%
GAGTGTTTGTCAAAATGCAA+TGG - chr8_1:89944763-89944782 Msa1224840:intron 35.0%
CAATGCTTAGTAAGAGTGAG+TGG - chr8_1:89941097-89941116 Msa1224840:three_prime_UTR 40.0%
ATGCTTAGTAAGAGTGAGTG+GGG - chr8_1:89941099-89941118 Msa1224840:three_prime_UTR 40.0%
TGGTTCAAGACAGAAGTTTG+AGG - chr8_1:89941394-89941413 Msa1224840:three_prime_UTR 40.0%
CAAAATTGAATGGCCCTCTA+TGG - chr8_1:89941667-89941686 Msa1224840:CDS 40.0%
CTCTTTCCCCTCAATTGAAA+GGG - chr8_1:89941784-89941803 Msa1224840:CDS 40.0%
TCTTTCCCCTCAATTGAAAG+GGG - chr8_1:89941785-89941804 Msa1224840:CDS 40.0%
! GGCCCTTTTGATGAGTTTTA+TGG - chr8_1:89941816-89941835 Msa1224840:intron 40.0%
!! AAAGCTGGTTGCTTTGAAAC+AGG + chr8_1:89942077-89942096 None:intergenic 40.0%
AGGAAAGGATGATCAAAAGC+TGG + chr8_1:89942092-89942111 None:intergenic 40.0%
AGACCTAATTTCCATCCTGA+AGG - chr8_1:89942244-89942263 Msa1224840:intron 40.0%
AGTCCTTCAGGATGGAAATT+AGG + chr8_1:89942250-89942269 None:intergenic 40.0%
TTCTCCTCAAAAAGTCCTTC+AGG + chr8_1:89942262-89942281 None:intergenic 40.0%
ACCTATTAGGAGAACAAAGG+AGG - chr8_1:89942366-89942385 Msa1224840:intron 40.0%
TCCTCCTTTGTTCTCCTAAT+AGG + chr8_1:89942370-89942389 None:intergenic 40.0%
TATTAGGAGAACAAAGGAGG+AGG - chr8_1:89942369-89942388 Msa1224840:intron 40.0%
GCAAGTTCAGCCAAAAGATA+TGG - chr8_1:89942403-89942422 Msa1224840:intron 40.0%
GTTCAGCCAAAAGATATGGA+AGG - chr8_1:89942407-89942426 Msa1224840:intron 40.0%
GTAAAAACCGATGAGATACG+AGG - chr8_1:89942553-89942572 Msa1224840:intron 40.0%
AACATGACCTCGTATCTCAT+CGG + chr8_1:89942563-89942582 None:intergenic 40.0%
CATGCGATAGCATATGTTGA+AGG - chr8_1:89942762-89942781 Msa1224840:intron 40.0%
TCTCAGATTTGGGTATTAGG+AGG - chr8_1:89942861-89942880 Msa1224840:CDS 40.0%
TGGGTATTAGGAGGTTCATT+TGG - chr8_1:89942870-89942889 Msa1224840:CDS 40.0%
! GATCTTAACAGCATTGAAGC+TGG - chr8_1:89942897-89942916 Msa1224840:intron 40.0%
TATACGGTGATAACAACACG+AGG - chr8_1:89943032-89943051 Msa1224840:CDS 40.0%
AGTGATGCATATCAAGCTAC+TGG - chr8_1:89943190-89943209 Msa1224840:intron 40.0%
TGCTACAATCTTCTTTGCTC+AGG - chr8_1:89943214-89943233 Msa1224840:intron 40.0%
TGATATCGTACTGGGAATCT+CGG + chr8_1:89943300-89943319 None:intergenic 40.0%
TGGAAGGATTATGAGACATG+TGG + chr8_1:89943403-89943422 None:intergenic 40.0%
ACACATAGTTGGAACTTGGA+AGG + chr8_1:89943419-89943438 None:intergenic 40.0%
TGAAAGAATCCAAGCACTTG+GGG + chr8_1:89943469-89943488 None:intergenic 40.0%
ACAATTGGAAGAGAGATGCT+AGG + chr8_1:89943494-89943513 None:intergenic 40.0%
TCGGTAGAAACTCTTTCTCT+TGG - chr8_1:89943603-89943622 Msa1224840:CDS 40.0%
GTTACGTCTGTCAGAATTCA+AGG - chr8_1:89943857-89943876 Msa1224840:CDS 40.0%
GAAGCTCAATGGTATGAGTT+GGG + chr8_1:89944004-89944023 None:intergenic 40.0%
TGAAGCTCAATGGTATGAGT+TGG + chr8_1:89944005-89944024 None:intergenic 40.0%
TCTATGAAGGTGAAGCTCAA+TGG + chr8_1:89944015-89944034 None:intergenic 40.0%
TCATTGTAGGATCCGAAAGA+GGG - chr8_1:89944096-89944115 Msa1224840:intron 40.0%
TGGATGCAATTTGGGAATCA+AGG - chr8_1:89944126-89944145 Msa1224840:intron 40.0%
ACAGTGCTACCATGATTGAA+TGG - chr8_1:89944196-89944215 Msa1224840:intron 40.0%
CAGTGCTACCATGATTGAAT+GGG - chr8_1:89944197-89944216 Msa1224840:intron 40.0%
AGTGCTACCATGATTGAATG+GGG - chr8_1:89944198-89944217 Msa1224840:intron 40.0%
GTTGTTAATTCAGAGCCTGA+TGG - chr8_1:89944228-89944247 Msa1224840:intron 40.0%
ACTTCAACTCAAATGGGAAG+TGG - chr8_1:89944258-89944277 Msa1224840:intron 40.0%
!! AGTGGTCATTTTCCTGAAGA+AGG - chr8_1:89944276-89944295 Msa1224840:intron 40.0%
! ACAGGTAGTAATGGAGATTG+GGG - chr8_1:89944414-89944433 Msa1224840:intron 40.0%
! TGGGGCCATTTCTTTTACTA+TGG - chr8_1:89944432-89944451 Msa1224840:intron 40.0%
! GGCCATTTCTTTTACTATGG+AGG - chr8_1:89944435-89944454 Msa1224840:intron 40.0%
! TTCTTTTACTATGGAGGACC+TGG - chr8_1:89944441-89944460 Msa1224840:intron 40.0%
AGATTCTCCATGTAAGCAAG+TGG - chr8_1:89944650-89944669 Msa1224840:five_prime_UTR 40.0%
GTGTGGTCAAGTTTCTCAAA+AGG - chr8_1:89944677-89944696 Msa1224840:five_prime_UTR 40.0%
TCTCAAAAGGCTGAAGAAAC+AGG - chr8_1:89944690-89944709 Msa1224840:five_prime_UTR 40.0%
AAGAAGCAGAGAGAGAGAGA+GGG - chr8_1:89941164-89941183 Msa1224840:three_prime_UTR 45.0%
ATCCAAGCAACCTTAAAGGG+AGG - chr8_1:89941216-89941235 Msa1224840:three_prime_UTR 45.0%
!! AACCTCCCTTTAAGGTTGCT+TGG + chr8_1:89941221-89941240 None:intergenic 45.0%
TCTCAGCGTCTTCTTCAACT+AGG - chr8_1:89941366-89941385 Msa1224840:three_prime_UTR 45.0%
TCTTCTTCAACTAGGCTTGG+TGG - chr8_1:89941374-89941393 Msa1224840:three_prime_UTR 45.0%
!!! ACCTGAATGGTTTTGACTGG+AGG + chr8_1:89941449-89941468 None:intergenic 45.0%
!!! AGGACCTGAATGGTTTTGAC+TGG + chr8_1:89941452-89941471 None:intergenic 45.0%
CCTTTCAATTGAGGGGAAAG+AGG + chr8_1:89941786-89941805 None:intergenic 45.0%
CCTCTTTCCCCTCAATTGAA+AGG - chr8_1:89941783-89941802 Msa1224840:CDS 45.0%
! TTGTTGTTGCAGAGTCCAGA+TGG - chr8_1:89942032-89942051 Msa1224840:intron 45.0%
TGTTGTTGCAGAGTCCAGAT+GGG - chr8_1:89942033-89942052 Msa1224840:intron 45.0%
CCTCAAAAAGTCCTTCAGGA+TGG + chr8_1:89942258-89942277 None:intergenic 45.0%
! CCATCCTGAAGGACTTTTTG+AGG - chr8_1:89942255-89942274 Msa1224840:intron 45.0%
GCTAATGGTAAATGCTCCGA+AGG - chr8_1:89942337-89942356 Msa1224840:intron 45.0%
! CCTAATAGGTATCGTGCCTT+CGG + chr8_1:89942356-89942375 None:intergenic 45.0%
CCACTCTGGTTAACCAAATC+AGG + chr8_1:89942472-89942491 None:intergenic 45.0%
!! CCTGATTTGGTTAACCAGAG+TGG - chr8_1:89942469-89942488 Msa1224840:intron 45.0%
ATACGAGGTCATGTTCGAGT+TGG - chr8_1:89942568-89942587 Msa1224840:intron 45.0%
ACTGTATGCAGTTCGGATGT+TGG + chr8_1:89942617-89942636 None:intergenic 45.0%
! TTAACAGCATTGAAGCTGGC+TGG - chr8_1:89942901-89942920 Msa1224840:intron 45.0%
AAAGAGGCTTACTGTCCAGT+AGG + chr8_1:89943065-89943084 None:intergenic 45.0%
GCCTCTTTGTTCTAACCTTG+TGG - chr8_1:89943077-89943096 Msa1224840:CDS 45.0%
GCCACAAGGTTAGAACAAAG+AGG + chr8_1:89943081-89943100 None:intergenic 45.0%
AGTCAGCAGTGACATAGCAA+TGG - chr8_1:89943246-89943265 Msa1224840:intron 45.0%
GTCAGCAGTGACATAGCAAT+GGG - chr8_1:89943247-89943266 Msa1224840:intron 45.0%
CCAGACACATAGTTGGAACT+TGG + chr8_1:89943423-89943442 None:intergenic 45.0%
CCAAGTTCCAACTATGTGTC+TGG - chr8_1:89943420-89943439 Msa1224840:intron 45.0%
AAAGAATCCAAGCACTTGGG+GGG + chr8_1:89943467-89943486 None:intergenic 45.0%
GAAAGAATCCAAGCACTTGG+GGG + chr8_1:89943468-89943487 None:intergenic 45.0%
ACGTCTGTCAGAATTCAAGG+TGG - chr8_1:89943860-89943879 Msa1224840:CDS 45.0%
TCTCCACTTCCACTCATTGT+AGG - chr8_1:89944083-89944102 Msa1224840:intron 45.0%
GATCCTACAATGAGTGGAAG+TGG + chr8_1:89944089-89944108 None:intergenic 45.0%
CTTTCGGATCCTACAATGAG+TGG + chr8_1:89944095-89944114 None:intergenic 45.0%
CTCATTGTAGGATCCGAAAG+AGG - chr8_1:89944095-89944114 Msa1224840:intron 45.0%
CATTGTAGGATCCGAAAGAG+GGG - chr8_1:89944097-89944116 Msa1224840:intron 45.0%
!! AAGGTACCGTGTTGGGATAT+TGG - chr8_1:89944145-89944164 Msa1224840:intron 45.0%
AGATGGCCAATATCCCAACA+CGG + chr8_1:89944154-89944173 None:intergenic 45.0%
TTCTCCTCCCCATTCAATCA+TGG + chr8_1:89944208-89944227 None:intergenic 45.0%
! GTTGAAGTGTGTTGACCATC+AGG + chr8_1:89944246-89944265 None:intergenic 45.0%
GCTTTGCCAAATCCTTCTTC+AGG + chr8_1:89944291-89944310 None:intergenic 45.0%
CTCAAAGCTCCAAAAGGACT+TGG - chr8_1:89944354-89944373 Msa1224840:intron 45.0%
! GTGTAAGTGCCAAGTCCTTT+TGG + chr8_1:89944366-89944385 None:intergenic 45.0%
CACTTCTCCACTTGCTTACA+TGG + chr8_1:89944660-89944679 None:intergenic 45.0%
TGTAAGCAAGTGGAGAAGTG+TGG - chr8_1:89944660-89944679 Msa1224840:five_prime_UTR 45.0%
TGTTTCTCCACTTCTCCCTA+TGG - chr8_1:89944740-89944759 Msa1224840:five_prime_UTR 45.0%
GTTTCTCCACTTCTCCCTAT+GGG - chr8_1:89944741-89944760 Msa1224840:five_prime_UTR 45.0%
!! AAAAAAAATCAAAATAAAAA+TGG + chr8_1:89942195-89942214 None:intergenic 5.0%
GAAGAAGCAGAGAGAGAGAG+AGG - chr8_1:89941163-89941182 Msa1224840:three_prime_UTR 50.0%
AGGAGGGGTCATTAGGAAGA+AGG - chr8_1:89941189-89941208 Msa1224840:three_prime_UTR 50.0%
GGAGGGGTCATTAGGAAGAA+GGG - chr8_1:89941190-89941209 Msa1224840:three_prime_UTR 50.0%
! GTAGTTATGGGTTGTGGGTG+TGG - chr8_1:89941302-89941321 Msa1224840:three_prime_UTR 50.0%
GCGTCTTCTTCAACTAGGCT+TGG - chr8_1:89941371-89941390 Msa1224840:three_prime_UTR 50.0%
GCCTCCAGTCAAAACCATTC+AGG - chr8_1:89941445-89941464 Msa1224840:exon 50.0%
CAGCAGAAGCTTGCCATAGA+GGG + chr8_1:89941683-89941702 None:intergenic 50.0%
GTTGTTGCAGAGTCCAGATG+GGG - chr8_1:89942034-89942053 Msa1224840:intron 50.0%
! CCGAAGGCACGATACCTATT+AGG - chr8_1:89942353-89942372 Msa1224840:intron 50.0%
AAATCAGGCTCTGCTGACCT+CGG + chr8_1:89942457-89942476 None:intergenic 50.0%
GGTTAACCAGAGTGGTCATC+AGG - chr8_1:89942477-89942496 Msa1224840:intron 50.0%
GTCTTACCTGATGACCACTC+TGG + chr8_1:89942486-89942505 None:intergenic 50.0%
GTTCGGATGTTGGAGCAACT+CGG + chr8_1:89942607-89942626 None:intergenic 50.0%
ACACGAGGCTATTCACCTAC+TGG - chr8_1:89943047-89943066 Msa1224840:CDS 50.0%
CACTTGGGGGGACATTACAA+TGG + chr8_1:89943455-89943474 None:intergenic 50.0%
! GGTATGAGTTGGGACGTTGA+AGG + chr8_1:89943994-89944013 None:intergenic 50.0%
!! GGCACTGGTGGATGCAATTT+GGG - chr8_1:89944118-89944137 Msa1224840:intron 50.0%
!! TGGGAATCAAGGTACCGTGT+TGG - chr8_1:89944137-89944156 Msa1224840:intron 50.0%
!! GGGAATCAAGGTACCGTGTT+GGG - chr8_1:89944138-89944157 Msa1224840:intron 50.0%
GCTACCATGATTGAATGGGG+AGG - chr8_1:89944201-89944220 Msa1224840:intron 50.0%
AACACTCCCATAGGGAGAAG+TGG + chr8_1:89944750-89944769 None:intergenic 50.0%
AGAGAGAGAGAGGGAGAGGA+GGG - chr8_1:89941173-89941192 Msa1224840:three_prime_UTR 55.0%
GCAGCAGAAGCTTGCCATAG+AGG + chr8_1:89941684-89941703 None:intergenic 55.0%
ACAAGTCGTTCGCAAAGCCG+AGG - chr8_1:89942437-89942456 Msa1224840:intron 55.0%
GAGGTCAGCAGAGCCTGATT+TGG - chr8_1:89942456-89942475 Msa1224840:intron 55.0%
GTAATGTCCCCCCAAGTGCT+TGG - chr8_1:89943457-89943476 Msa1224840:CDS 55.0%
ATCCACCAGTGCCCCTCTTT+CGG + chr8_1:89944111-89944130 None:intergenic 55.0%
!! GGGCACTGGTGGATGCAATT+TGG - chr8_1:89944117-89944136 Msa1224840:intron 55.0%
GCAGAGAGAGAGAGAGGGAG+AGG - chr8_1:89941169-89941188 Msa1224840:three_prime_UTR 60.0%
GAGAGAGAGAGAGGGAGAGG+AGG - chr8_1:89941172-89941191 Msa1224840:three_prime_UTR 60.0%
GAGAGAGAGAGGGAGAGGAG+GGG - chr8_1:89941174-89941193 Msa1224840:three_prime_UTR 60.0%
GAGGGAGAGGAGGGGTCATT+AGG - chr8_1:89941182-89941201 Msa1224840:three_prime_UTR 60.0%
! CAGCATTGAAGCTGGCTGGC+AGG - chr8_1:89942905-89942924 Msa1224840:intron 60.0%
! AGGATCCGAAAGAGGGGCAC+TGG - chr8_1:89944103-89944122 Msa1224840:intron 60.0%
!! ATCCGAAAGAGGGGCACTGG+TGG - chr8_1:89944106-89944125 Msa1224840:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 89941090 89944843 89941090 ID=Msa1224840;Name=Msa1224840
chr8_1 mRNA 89941090 89944843 89941090 ID=Msa1224840-mRNA-1;Parent=Msa1224840;Name=Msa1224840-mRNA-1;_AED=0.15;_eAED=0.15;_QI=192|1|1|1|0.85|0.75|8|358|416
chr8_1 exon 89941090 89941828 89941090 ID=Msa1224840-mRNA-1:exon:32700;Parent=Msa1224840-mRNA-1
chr8_1 exon 89942597 89942743 89942597 ID=Msa1224840-mRNA-1:exon:32699;Parent=Msa1224840-mRNA-1
chr8_1 exon 89942861 89942914 89942861 ID=Msa1224840-mRNA-1:exon:32698;Parent=Msa1224840-mRNA-1
chr8_1 exon 89943007 89943171 89943007 ID=Msa1224840-mRNA-1:exon:32697;Parent=Msa1224840-mRNA-1
chr8_1 exon 89943435 89943692 89943435 ID=Msa1224840-mRNA-1:exon:32696;Parent=Msa1224840-mRNA-1
chr8_1 exon 89943803 89943889 89943803 ID=Msa1224840-mRNA-1:exon:32695;Parent=Msa1224840-mRNA-1
chr8_1 exon 89944467 89944767 89944467 ID=Msa1224840-mRNA-1:exon:32694;Parent=Msa1224840-mRNA-1
chr8_1 exon 89944794 89944843 89944794 ID=Msa1224840-mRNA-1:exon:32693;Parent=Msa1224840-mRNA-1
chr8_1 five_prime_UTR 89944794 89944843 89944794 ID=Msa1224840-mRNA-1:five_prime_utr;Parent=Msa1224840-mRNA-1
chr8_1 five_prime_UTR 89944626 89944767 89944626 ID=Msa1224840-mRNA-1:five_prime_utr;Parent=Msa1224840-mRNA-1
chr8_1 CDS 89944467 89944625 89944467 ID=Msa1224840-mRNA-1:cds;Parent=Msa1224840-mRNA-1
chr8_1 CDS 89943803 89943889 89943803 ID=Msa1224840-mRNA-1:cds;Parent=Msa1224840-mRNA-1
chr8_1 CDS 89943435 89943692 89943435 ID=Msa1224840-mRNA-1:cds;Parent=Msa1224840-mRNA-1
chr8_1 CDS 89943007 89943171 89943007 ID=Msa1224840-mRNA-1:cds;Parent=Msa1224840-mRNA-1
chr8_1 CDS 89942861 89942914 89942861 ID=Msa1224840-mRNA-1:cds;Parent=Msa1224840-mRNA-1
chr8_1 CDS 89942597 89942743 89942597 ID=Msa1224840-mRNA-1:cds;Parent=Msa1224840-mRNA-1
chr8_1 CDS 89941448 89941828 89941448 ID=Msa1224840-mRNA-1:cds;Parent=Msa1224840-mRNA-1
chr8_1 three_prime_UTR 89941090 89941447 89941090 ID=Msa1224840-mRNA-1:three_prime_utr;Parent=Msa1224840-mRNA-1
Gene Sequence

>Msa1224840

ATGGGTTGTGGGTGTGGTGTTAGTGTTGTTCTTGTTTTTTGTTTATGGGGTGTTTTGATCTCAGCGTCTTCTTCAACTAGGCTTGGTGGTTCAAGACAGAAGTTTGAGGTTAACAAGCATTTGAATCGTCTTAACAAGCCTCCAGTCAAAACCATTCAGAGTCCAGATGGGGATATTATAGATTGTGTACCTGTTTCAAAGCAACCAGCTTTTGATCATCCTTTCCTCAAAGATCACAAAATTCAGATGAGACCTAATTTCCATCCTGAAGGACTTTTTGAGGAGAATAAGTTGGATGATAACAAAGAAAAATCAAGTACTCCCATTAATCAACTATGGCATGCTAATGGTAAATGCTCCGAAGGCACGATACCTATTAGGAGAACAAAGGAGGAGGATGTTCTAAGAGCAAGTTCAGCCAAAAGATATGGAAGGAAGAAGCACAAGTCGTTCGCAAAGCCGAGGTCAGCAGAGCCTGATTTGGTTAACCAGAGTGGTCATCAGCATGCGATAGCATATGTTGAAGGAGATAAGTTCTATGGAGCAAAAGCTACAATAAATGTTTGGGAACCAAAGATACAGCAGACTAATGAGTTCAGTTTGTCTCAGATTTGGGTATTAGGAGGTTCATTTGGTCAAGATCTTAACAGCATTGAAGCTGGCTGGCAGGTTAGTCCAGATTTATACGGTGATAACAACACGAGGCTATTCACCTACTGGACAAGTGATGCATATCAAGCTACTGGTTGCTACAATCTTCTTTGCTCAGGATTTATTCAAGTCAGCAGTGACATAGCAATGGGTGCAAGCATTTCTCCAATTTCTTCATACCGAGATTCCCAGTACGATATCAGCATACTTATCTGGAAGGATCCGAAAGAGGGGCACTGGTGGATGCAATTTGGGAATCAAGGTACCGTGTTGGGATATTGGCCATCTTTCTTGTTCTCATATTTAGCAGACAGTGCTACCATGATTGAATGGGGAGGAGAAGTTGTTAATTCAGAGCCTGATGGTCAACACACTTCAACTCAAATGGGAAGTGGTCATTTTCCTGAAGAAGGATTTGGCAAAGCAAGTTACTTTAGGAATATTCAAGTGGTTGATAGCTCTAATAATCTCAAAGCTCCAAAAGGACTTGGCACTTACACTGAACATCCAAACTGTTATGATGTTCAAACAGGTAGTAATGGAGATTGGGGCCATTTCTTTTACTATGGAGGACCTGGTAAAAATGCAAATTGTCAATGA

Protein sequence

>Msa1224840

MGCGCGVSVVLVFCLWGVLISASSSTRLGGSRQKFEVNKHLNRLNKPPVKTIQSPDGDIIDCVPVSKQPAFDHPFLKDHKIQMRPNFHPEGLFEENKLDDNKEKSSTPINQLWHANGKCSEGTIPIRRTKEEDVLRASSAKRYGRKKHKSFAKPRSAEPDLVNQSGHQHAIAYVEGDKFYGAKATINVWEPKIQQTNEFSLSQIWVLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVSSDIAMGASISPISSYRDSQYDISILIWKDPKEGHWWMQFGNQGTVLGYWPSFLFSYLADSATMIEWGGEVVNSEPDGQHTSTQMGSGHFPEEGFGKASYFRNIQVVDSSNNLKAPKGLGTYTEHPNCYDVQTGSNGDWGHFFYYGGPGKNANCQ*