AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0702590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702590 MtrunA17_Chr8g0380511 99.760 416 1 0 1 416 1 416 0.0 868
Msa0702590 MtrunA17_Chr2g0309251 76.166 386 88 3 33 415 41 425 0.0 612
Msa0702590 MtrunA17_Chr7g0274951 59.278 388 149 7 36 415 53 439 5.27e-173 491
Msa0702590 MtrunA17_Chr1g0189961 58.942 397 145 6 36 415 55 450 1.20e-170 485
Msa0702590 MtrunA17_Chr8g0368161 56.443 388 144 5 32 415 81 447 1.88e-157 451
Msa0702590 MtrunA17_Chr5g0413131 55.238 420 159 7 7 415 61 462 3.51e-156 449
Msa0702590 MtrunA17_Chr3g0117271 55.906 381 149 7 36 415 133 495 3.27e-154 445
Msa0702590 MtrunA17_Chr4g0058771 56.168 381 149 7 36 415 117 480 6.37e-154 444
Msa0702590 MtrunA17_Chr2g0314461 50.765 392 155 9 32 415 44 405 4.15e-130 380
Msa0702590 MtrunA17_Chr8g0368241 49.610 385 175 6 32 415 47 413 4.30e-130 380
Msa0702590 MtrunA17_Chr2g0314451 50.000 380 166 8 37 415 48 404 9.08e-127 372
Msa0702590 MtrunA17_Chr2g0314471 49.870 385 169 8 32 415 44 405 1.04e-125 369
Msa0702590 MtrunA17_Chr6g0453411 42.593 378 186 9 53 413 8 371 4.43e-104 313
Msa0702590 MtrunA17_Chr8g0368201 47.077 325 138 7 111 415 9 319 1.09e-101 305
Msa0702590 MtrunA17_Chr8g0368291 39.767 430 205 12 7 415 8 404 1.35e-99 302
Msa0702590 MtrunA17_Chr3g0135381 39.100 422 237 7 1 411 20 432 3.61e-99 304
Msa0702590 MtrunA17_Chr3g0135371 40.052 387 213 7 36 411 51 429 4.95e-95 291
Msa0702590 MtrunA17_Chr2g0326371 52.667 300 123 8 120 415 75 359 8.05e-94 286
Msa0702590 MtrunA17_Chr8g0368341 42.308 364 175 9 54 415 4 334 1.55e-90 277
Msa0702590 MtrunA17_Chr8g0368181 59.067 193 77 1 223 415 2 192 6.41e-79 242
Msa0702590 MtrunA17_Chr3g0135401 40.062 322 176 5 105 412 28 346 1.02e-76 242
Msa0702590 MtrunA17_Chr8g0368221 45.263 285 121 8 7 290 8 258 2.61e-74 233
Msa0702590 MtrunA17_Chr1g0151871 37.695 321 178 6 98 415 25 326 2.75e-71 227
Msa0702590 MtrunA17_Chr3g0129891 48.214 224 108 4 193 415 163 379 4.27e-69 223
Msa0702590 MtrunA17_Chr3g0129891 56.075 107 37 3 41 146 86 183 5.39e-26 108
Msa0702590 MtrunA17_Chr8g0368361 50.256 195 93 4 223 415 2 194 8.11e-67 211
Msa0702590 MtrunA17_Chr8g0368331 40.072 277 133 5 168 415 13 285 3.07e-66 213
Msa0702590 MtrunA17_Chr8g0368281 48.205 195 99 2 223 416 2 195 2.86e-60 194
Msa0702590 MtrunA17_Chr3g0138811 30.751 413 235 18 8 413 19 387 6.51e-58 194
Msa0702590 MtrunA17_Chr3g0135431 31.429 385 177 10 5 312 12 386 1.39e-54 186
Msa0702590 MtrunA17_Chr3g0135441 37.603 242 120 7 176 411 10 226 4.65e-50 169
Msa0702590 MtrunA17_Chr8g0368351 41.558 231 99 6 7 224 41 248 9.85e-49 166
Msa0702590 MtrunA17_Chr2g0302691 33.067 375 202 16 51 415 37 372 2.41e-48 169
Msa0702590 MtrunA17_Chr8g0339871 40.244 246 133 11 178 415 2 241 3.28e-44 154
Msa0702590 MtrunA17_Chr8g0368231 58.730 126 49 3 291 415 8 131 4.04e-44 150
Msa0702590 MtrunA17_Chr8g0368261 53.077 130 52 3 290 415 4 128 6.93e-41 141
Msa0702590 MtrunA17_Chr8g0368381 49.153 118 58 2 223 339 2 118 3.99e-37 131
Msa0702590 MtrunA17_Chr8g0391201 36.735 245 139 13 179 415 3 239 7.70e-37 134
Msa0702590 MtrunA17_Chr8g0368171 34.802 227 99 8 10 224 15 204 1.81e-31 119
Msa0702590 MtrunA17_Chr5g0445181 27.246 345 186 11 8 352 19 298 5.77e-31 120
Msa0702590 MtrunA17_Chr3g0135451 39.103 156 81 4 5 146 4 159 6.59e-28 109
Msa0702590 MtrunA17_Chr2g0302651 33.778 225 114 11 201 415 1 200 9.02e-26 103
Msa0702590 MtrunA17_Chr8g0353931 30.222 225 124 8 9 224 3 203 3.81e-23 96.7
Msa0702590 MtrunA17_Chr8g0368271 45.045 111 51 3 37 146 52 153 2.23e-21 91.3
Msa0702590 MtrunA17_Chr8g0353941 33.158 190 116 6 228 413 1 183 3.13e-21 90.5
Msa0702590 MtrunA17_Chr8g0353971 32.558 172 107 4 243 410 4 170 3.56e-21 90.1
Msa0702590 MtrunA17_Chr8g0353961 34.815 135 72 3 9 137 3 127 8.92e-21 88.6
Msa0702590 MtrunA17_Chr8g0368321 44.737 114 48 4 34 146 43 142 1.18e-20 89.0
Msa0702590 MtrunA17_Chr5g0426971 29.508 244 137 9 176 413 46 260 6.64e-19 85.9
Msa0702590 MtrunA17_Chr5g0434771 33.125 160 98 5 236 393 12 164 2.46e-18 82.4
Msa0702590 MtrunA17_Chr5g0443801 36.364 110 68 2 179 288 22 129 1.01e-14 72.0
Msa0702590 MtrunA17_Chr3g0135411 46.053 76 36 1 9 84 42 112 1.28e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702590 AT3G13510.1 81.481 405 74 1 11 415 15 418 0.0 707
Msa0702590 AT1G55360.1 81.818 407 71 3 10 415 17 421 0.0 699
Msa0702590 AT5G56530.2 78.133 407 87 2 10 416 16 420 0.0 676
Msa0702590 AT5G56530.1 78.133 407 87 2 10 416 16 420 0.0 676
Msa0702590 AT2G44210.1 61.408 412 154 5 7 415 5 414 0.0 543
Msa0702590 AT2G44210.2 57.466 442 153 6 7 415 5 444 0.0 530
Msa0702590 AT5G18460.1 58.168 404 157 7 20 415 30 429 4.70e-167 476
Msa0702590 AT1G10750.1 59.474 380 135 6 37 415 105 466 7.47e-164 469
Msa0702590 AT1G23340.2 54.808 416 162 7 8 415 11 408 4.58e-162 462
Msa0702590 AT1G23340.1 54.808 416 162 7 8 415 11 408 4.58e-162 462
Msa0702590 AT1G70550.1 57.105 380 144 6 37 415 103 464 1.93e-158 455
Msa0702590 AT5G50150.1 55.469 384 147 5 36 415 56 419 3.52e-156 447
Msa0702590 AT2G44220.1 49.510 408 189 6 13 415 7 402 2.63e-151 434
Msa0702590 AT2G44240.1 46.602 412 204 7 5 415 5 401 4.48e-133 388
Msa0702590 AT2G17750.1 44.608 408 213 7 9 416 2 396 2.49e-130 381
Msa0702590 AT2G19360.1 46.838 427 197 8 7 415 11 425 1.06e-129 380
Msa0702590 AT2G44250.1 45.803 417 202 10 9 415 6 408 3.03e-121 358
Msa0702590 AT3G48230.1 46.997 383 174 12 41 415 11 372 3.25e-114 339
Msa0702590 AT5G19170.1 43.716 366 181 7 48 410 22 365 1.22e-99 302
Msa0702590 AT1G23340.3 52.234 291 114 6 8 290 11 284 1.13e-98 296
Msa0702590 AT2G44250.2 46.774 310 158 6 109 415 20 325 1.59e-93 285
Msa0702590 AT5G25950.1 41.542 402 202 9 35 415 42 431 1.40e-92 286
Msa0702590 AT2G20170.1 38.741 413 226 13 5 410 4 396 3.95e-89 276
Msa0702590 AT2G20170.2 38.741 413 226 13 5 410 4 396 3.95e-89 276
Msa0702590 AT5G25960.1 38.293 410 191 10 12 415 3 356 1.17e-78 247
Msa0702590 AT2G20170.3 35.835 413 221 13 5 410 4 379 1.23e-77 246
Msa0702590 AT4G23390.1 36.650 412 228 14 9 410 9 397 9.19e-74 236
Msa0702590 AT4G23370.1 35.835 413 235 17 9 410 8 401 1.47e-71 231
Msa0702590 AT4G23380.1 32.767 412 246 11 7 410 10 398 1.50e-69 225
Msa0702590 AT4G23350.1 33.679 386 228 11 33 410 35 400 5.86e-67 219
Msa0702590 AT1G70550.2 52.913 206 79 5 37 241 103 291 2.56e-66 213
Msa0702590 AT4G23355.1 34.884 387 220 13 33 410 35 398 6.17e-66 216
Msa0702590 AT4G23365.1 34.278 388 221 13 33 410 35 398 2.36e-65 214
Msa0702590 AT4G23360.1 32.474 388 229 12 33 410 35 399 4.38e-60 201
Msa0702590 AT1G10750.2 44.635 233 106 7 37 265 105 318 5.74e-57 191
Msa0702590 AT2G35250.1 34.072 361 189 11 58 413 24 340 3.85e-54 183
Msa0702590 AT1G10190.1 32.458 419 236 18 9 410 6 394 4.75e-51 177
Msa0702590 AT4G15050.1 33.249 394 214 19 33 410 34 394 5.99e-50 174
Msa0702590 AT4G15053.1 30.361 415 253 15 9 410 10 401 2.02e-49 172
Msa0702590 AT4G10220.1 28.873 426 255 16 1 410 5 398 1.07e-44 160
Msa0702590 AT4G17505.1 29.891 368 185 11 49 410 18 318 8.24e-43 153
Msa0702590 AT2G27320.1 34.385 317 158 13 60 371 30 301 3.75e-42 151
Msa0702590 AT5G25410.1 28.032 371 227 14 45 410 28 363 2.72e-41 150
Msa0702590 AT4G23373.1 31.359 287 159 8 9 293 8 258 5.12e-41 147
Msa0702590 AT2G24950.1 31.008 387 225 17 35 410 54 409 2.44e-40 149
Msa0702590 AT5G60380.1 28.533 375 218 13 48 410 31 367 9.69e-40 146
Msa0702590 AT5G05030.1 28.232 379 222 16 45 413 22 360 2.08e-37 139
Msa0702590 AT5G46820.1 27.005 374 229 13 48 410 7 347 5.48e-36 135
Msa0702590 AT5G46810.1 26.389 360 234 10 61 410 11 349 3.82e-35 133
Msa0702590 AT4G10210.1 29.471 397 222 18 1 374 5 366 3.14e-34 131
Msa0702590 AT5G46200.1 25.450 389 237 12 61 410 31 405 1.61e-32 127
Msa0702590 AT4G23080.1 28.037 428 254 17 5 412 13 406 1.74e-32 127
Msa0702590 AT4G17860.1 28.610 367 201 17 61 410 29 351 1.74e-32 126
Msa0702590 AT2G38255.1 33.945 218 106 7 61 277 14 194 4.35e-31 119
Msa0702590 AT5G11660.1 30.464 302 183 11 118 413 25 305 6.11e-30 118
Msa0702590 AT5G25415.1 29.927 274 169 10 151 413 72 333 9.70e-25 104
Msa0702590 AT2G03930.2 40.708 113 65 2 147 257 22 134 3.48e-23 95.9
Msa0702590 AT5G36680.1 29.461 241 141 8 118 354 51 266 3.41e-21 94.4
Msa0702590 AT5G36770.1 29.461 241 141 8 118 354 51 266 3.41e-21 94.4
Msa0702590 AT5G37520.1 35.393 178 97 9 240 411 33 198 3.80e-18 82.8
Msa0702590 AT5G04937.1 29.442 197 113 8 220 410 22 198 1.72e-17 80.9

Find 131 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCTTCCATATCTTT+TGG 0.227365 4_4:+74257973 None:intergenic
TTGTCTCAGATTTGGGTATT+AGG 0.229770 4_4:-74257528 Msa0702590:CDS
GGGCACTGGTGGATGCAATT+TGG 0.251775 4_4:-74256269 Msa0702590:CDS
AGCATGCCATAGTTGATTAA+TGG 0.268560 4_4:+74258069 None:intergenic
TCATTAGTCTGCTGTATCTT+TGG 0.288635 4_4:+74257558 None:intergenic
GTTATTGTAGTTATGGGTTG+TGG 0.295012 4_4:-74259092 Msa0702590:exon
AGTTCAGTTTGTCTCAGATT+TGG 0.300318 4_4:-74257536 Msa0702590:CDS
TTGGCAAAGCAAGTTACTTT+AGG 0.304436 4_4:-74256085 Msa0702590:CDS
CCTCAAAGATCACAAAATTC+AGG 0.306215 4_4:-74258277 Msa0702590:intron
TCCTCCTTTGTTCTCCTAAT+AGG 0.309052 4_4:+74258019 None:intergenic
GTATATCCAAGCAACCTTAA+AGG 0.309448 4_4:-74259176 Msa0702590:five_prime_UTR
GAATCTCGGTATGAAGAAAT+TGG 0.312780 4_4:+74257103 None:intergenic
GAGGGAGAGGAGGGGTCATT+AGG 0.313158 4_4:-74259206 Msa0702590:five_prime_UTR
GGCACTGGTGGATGCAATTT+GGG 0.316794 4_4:-74256268 Msa0702590:CDS
CAAAAGCTACAATAAATGTT+TGG 0.320541 4_4:-74257584 Msa0702590:CDS
CACTTCTCCACTTGCTTACA+TGG 0.336372 4_4:+74255729 None:intergenic
ATCCACCAGTGCCCCTCTTT+CGG 0.340644 4_4:+74256278 None:intergenic
GTGTAAGTGCCAAGTCCTTT+TGG 0.343032 4_4:+74256023 None:intergenic
CCGAAGGCACGATACCTATT+AGG 0.344482 4_4:-74258033 Msa0702590:CDS
GCAAGTTCAGCCAAAAGATA+TGG 0.346818 4_4:-74257983 Msa0702590:CDS
AGTCCTTCAGGATGGAAATT+AGG 0.348598 4_4:+74258139 None:intergenic
GAAGAGTGTTATTGTAGTTA+TGG 0.361509 4_4:-74259099 Msa0702590:exon
ACGATATCAGCATACTTATC+TGG 0.363458 4_4:-74257075 Msa0702590:CDS
GCATGCCATAGTTGATTAAT+GGG 0.363855 4_4:+74258070 None:intergenic
TGCTACAATCTTCTTTGCTC+AGG 0.364167 4_4:-74257172 Msa0702590:CDS
GTTCAGTTTGTCTCAGATTT+GGG 0.365560 4_4:-74257535 Msa0702590:CDS
AAGAGTGTTATTGTAGTTAT+GGG 0.367467 4_4:-74259098 Msa0702590:exon
AACCTCCCTTTAAGGTTGCT+TGG 0.369446 4_4:+74259170 None:intergenic
GCTTTGCCAAATCCTTCTTC+AGG 0.373471 4_4:+74256098 None:intergenic
GTTGAAGGAGATAAGTTCTA+TGG 0.379108 4_4:-74257609 Msa0702590:CDS
TGTTTCTCCACTTCTCCCTA+TGG 0.381521 4_4:-74255646 Msa0702590:three_prime_UTR
GTTTGAACATCATAACAGTT+TGG 0.388940 4_4:+74255993 None:intergenic
AACAGGTAGTAATGGAGATT+GGG 0.389158 4_4:-74255973 Msa0702590:CDS
TCAACACACTTCAACTCAAA+TGG 0.390051 4_4:-74256135 Msa0702590:CDS
GTACTCCCATTAATCAACTA+TGG 0.390179 4_4:-74258075 Msa0702590:CDS
TTGTTATCACCGTATAAATC+TGG 0.391554 4_4:+74257361 None:intergenic
GCCTCCAGTCAAAACCATTC+AGG 0.391742 4_4:-74258943 Msa0702590:intron
AAGGTACCGTGTTGGGATAT+TGG 0.402079 4_4:-74256241 Msa0702590:CDS
CCACTCTGGTTAACCAAATC+AGG 0.405418 4_4:+74257917 None:intergenic
TCTCAAAAGGCTGAAGAAAC+AGG 0.406561 4_4:-74255696 Msa0702590:three_prime_UTR
GGGAATCAAGGTACCGTGTT+GGG 0.409522 4_4:-74256248 Msa0702590:CDS
AAAAGCTACAATAAATGTTT+GGG 0.411915 4_4:-74257583 Msa0702590:CDS
AAAGCTGGTTGCTTTGAAAC+AGG 0.418938 4_4:+74258312 None:intergenic
TATATCCAAGCAACCTTAAA+GGG 0.419344 4_4:-74259175 Msa0702590:five_prime_UTR
TGGGTATTAGGAGGTTCATT+TGG 0.423183 4_4:-74257516 Msa0702590:CDS
CAGGTTAGTCCAGATTTATA+CGG 0.425230 4_4:-74257370 Msa0702590:CDS
GAGGTCAGCAGAGCCTGATT+TGG 0.425485 4_4:-74257930 Msa0702590:CDS
TTATTGTAGTTATGGGTTGT+GGG 0.430756 4_4:-74259091 Msa0702590:exon
AAACAGGTAGTAATGGAGAT+TGG 0.437514 4_4:-74255974 Msa0702590:CDS
GGTTAACCAGAGTGGTCATC+AGG 0.443209 4_4:-74257909 Msa0702590:intron
TACAAAGATTGAAGAGAAGA+AGG 0.446224 4_4:+74255826 None:intergenic
GTTGAAGTGTGTTGACCATC+AGG 0.447345 4_4:+74256143 None:intergenic
AATCAACTATGGCATGCTAA+TGG 0.448204 4_4:-74258064 Msa0702590:CDS
CCTAATAGGTATCGTGCCTT+CGG 0.450371 4_4:+74258033 None:intergenic
AGGAGGGGTCATTAGGAAGA+AGG 0.450470 4_4:-74259199 Msa0702590:five_prime_UTR
GTCCTCCATAGTAAAAGAAA+TGG 0.450774 4_4:+74255949 None:intergenic
AACTGTTATGATGTTCAAAC+AGG 0.450985 4_4:-74255990 Msa0702590:CDS
CTCAAAGCTCCAAAAGGACT+TGG 0.453716 4_4:-74256032 Msa0702590:CDS
GTTTCTCCACTTCTCCCTAT+GGG 0.453996 4_4:-74255645 Msa0702590:three_prime_UTR
GTAGTTATGGGTTGTGGGTG+TGG 0.459452 4_4:-74259086 Msa0702590:exon
ACAGTGCTACCATGATTGAA+TGG 0.461086 4_4:-74256190 Msa0702590:CDS
AGGAAGAAGCAGAGAGAGAG+AGG 0.462078 4_4:-74259225 Msa0702590:intron
TAAGTATGCTGATATCGTAC+TGG 0.467752 4_4:+74257080 None:intergenic
CAGTGCTACCATGATTGAAT+GGG 0.467794 4_4:-74256189 Msa0702590:CDS
CAGCATTGAAGCTGGCTGGC+AGG 0.476183 4_4:-74257481 Msa0702590:intron
GGATTTATAATAACACTACT+AGG 0.487493 4_4:+74255847 None:intergenic
GTGTGGTCAAGTTTCTCAAA+AGG 0.503940 4_4:-74255709 Msa0702590:three_prime_UTR
CAACACACTTCAACTCAAAT+GGG 0.505639 4_4:-74256134 Msa0702590:CDS
AATAATCTCAAAGCTCCAAA+AGG 0.510898 4_4:-74256038 Msa0702590:CDS
CAATCTATAATATCCCCATC+TGG 0.512044 4_4:+74258339 None:intergenic
GATGTTCAAACAGGTAGTAA+TGG 0.513582 4_4:-74255981 Msa0702590:CDS
GGAGGGGTCATTAGGAAGAA+GGG 0.515428 4_4:-74259198 Msa0702590:five_prime_UTR
AGGAAAGGATGATCAAAAGC+TGG 0.517532 4_4:+74258297 None:intergenic
TGGATGCAATTTGGGAATCA+AGG 0.519819 4_4:-74256260 Msa0702590:CDS
TTGTTGTTGCAGAGTCCAGA+TGG 0.520508 4_4:-74258354 Msa0702590:intron
CATGCGATAGCATATGTTGA+AGG 0.521399 4_4:-74257624 Msa0702590:CDS
TCTTCTTCAACTAGGCTTGG+TGG 0.522808 4_4:-74259014 Msa0702590:CDS
GCGTCTTCTTCAACTAGGCT+TGG 0.527608 4_4:-74259017 Msa0702590:CDS
AGTGATGCATATCAAGCTAC+TGG 0.528855 4_4:-74257196 Msa0702590:CDS
TTCTCCTCCCCATTCAATCA+TGG 0.529304 4_4:+74256181 None:intergenic
ACACGAGGCTATTCACCTAC+TGG 0.530474 4_4:-74257339 Msa0702590:CDS
GATCTTAACAGCATTGAAGC+TGG 0.532791 4_4:-74257489 Msa0702590:CDS
TCTCAGATTTGGGTATTAGG+AGG 0.536286 4_4:-74257525 Msa0702590:CDS
GTCAGCAGTGACATAGCAAT+GGG 0.541992 4_4:-74257139 Msa0702590:CDS
CTCATTGTAGGATCCGAAAG+AGG 0.542095 4_4:-74256291 Msa0702590:intron
TCTCAGCGTCTTCTTCAACT+AGG 0.544269 4_4:-74259022 Msa0702590:CDS
TGGTTCAAGACAGAAGTTTG+AGG 0.544700 4_4:-74258994 Msa0702590:CDS
TGTTGTTGCAGAGTCCAGAT+GGG 0.553616 4_4:-74258353 Msa0702590:intron
AGGATCCGAAAGAGGGGCAC+TGG 0.555253 4_4:-74256283 Msa0702590:CDS
ATCCGAAAGAGGGGCACTGG+TGG 0.556202 4_4:-74256280 Msa0702590:CDS
AAATATGAGAACAAGAAAGA+TGG 0.557574 4_4:+74256218 None:intergenic
CAATGCTTAGTAAGAGTGAG+TGG 0.560405 4_4:-74259289 Msa0702590:five_prime_UTR
TTAACAGCATTGAAGCTGGC+TGG 0.562128 4_4:-74257485 Msa0702590:CDS
AACACTCCCATAGGGAGAAG+TGG 0.567702 4_4:+74255639 None:intergenic
AGATTCTCCATGTAAGCAAG+TGG 0.578095 4_4:-74255736 Msa0702590:three_prime_UTR
AGTCAGCAGTGACATAGCAA+TGG 0.582074 4_4:-74257140 Msa0702590:CDS
TCATTGTAGGATCCGAAAGA+GGG 0.582114 4_4:-74256290 Msa0702590:intron
AAAATCACATAACACTAACT+AGG 0.582767 4_4:+74255592 None:intergenic
TGGGAATCAAGGTACCGTGT+TGG 0.586975 4_4:-74256249 Msa0702590:CDS
AATGCTTAGTAAGAGTGAGT+GGG 0.591240 4_4:-74259288 Msa0702590:five_prime_UTR
AGACCTAATTTCCATCCTGA+AGG 0.592817 4_4:-74258142 Msa0702590:CDS
ACAGGTAGTAATGGAGATTG+GGG 0.600382 4_4:-74255972 Msa0702590:CDS
TGATATCGTACTGGGAATCT+CGG 0.601017 4_4:+74257089 None:intergenic
ACTTCAACTCAAATGGGAAG+TGG 0.607508 4_4:-74256128 Msa0702590:CDS
GCTAATGGTAAATGCTCCGA+AGG 0.608551 4_4:-74258049 Msa0702590:CDS
TTACTTTAGGAATATTCAAG+TGG 0.610068 4_4:-74256072 Msa0702590:CDS
AAAGAGGCTTACTGTCCAGT+AGG 0.611084 4_4:+74257324 None:intergenic
GTTGTTAATTCAGAGCCTGA+TGG 0.611724 4_4:-74256158 Msa0702590:CDS
TATCAGCATACTTATCTGGA+AGG 0.613773 4_4:-74257071 Msa0702590:intron
GGAGAAACAAATAAAATACA+AGG 0.614762 4_4:+74255660 None:intergenic
TATTAGGAGAACAAAGGAGG+AGG 0.617651 4_4:-74258017 Msa0702590:CDS
AAGTATGCTGATATCGTACT+GGG 0.623096 4_4:+74257081 None:intergenic
GAGAGAGAGAGGGAGAGGAG+GGG 0.627203 4_4:-74259214 Msa0702590:five_prime_UTR
GTCTTACCTGATGACCACTC+TGG 0.627576 4_4:+74257903 None:intergenic
GGAAGAAGCAGAGAGAGAGA+GGG 0.627758 4_4:-74259224 Msa0702590:intron
ATCCAAGCAACCTTAAAGGG+AGG 0.627840 4_4:-74259172 Msa0702590:five_prime_UTR
GTTCAGCCAAAAGATATGGA+AGG 0.639850 4_4:-74257979 Msa0702590:CDS
ACAAGTCGTTCGCAAAGCCG+AGG 0.641777 4_4:-74257949 Msa0702590:CDS
ACCTATTAGGAGAACAAAGG+AGG 0.643991 4_4:-74258020 Msa0702590:CDS
AAATCAGGCTCTGCTGACCT+CGG 0.649895 4_4:+74257932 None:intergenic
CCTGATTTGGTTAACCAGAG+TGG 0.651457 4_4:-74257917 Msa0702590:CDS
ATGCTTAGTAAGAGTGAGTG+GGG 0.659197 4_4:-74259287 Msa0702590:five_prime_UTR
CATTGTAGGATCCGAAAGAG+GGG 0.663178 4_4:-74256289 Msa0702590:intron
GATACCTATTAGGAGAACAA+AGG 0.674157 4_4:-74258023 Msa0702590:CDS
GAGTGTTTGTCAAAATGCAA+TGG 0.684945 4_4:-74255623 Msa0702590:three_prime_UTR
TGTAAGCAAGTGGAGAAGTG+TGG 0.686259 4_4:-74255726 Msa0702590:three_prime_UTR
AGTGCTACCATGATTGAATG+GGG 0.694678 4_4:-74256188 Msa0702590:CDS
GCTACCATGATTGAATGGGG+AGG 0.698683 4_4:-74256185 Msa0702590:CDS
GTTGTTGCAGAGTCCAGATG+GGG 0.710931 4_4:-74258352 Msa0702590:intron
TATACGGTGATAACAACACG+AGG 0.745144 4_4:-74257354 Msa0702590:CDS
AGATGGCCAATATCCCAACA+CGG 0.758233 4_4:+74256235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATAATACAAGAAATTT+TGG + chr4_4:74257825-74257844 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAACTGT+CGG - chr4_4:74258059-74258078 Msa0702590:CDS 10.0%
!! TAAATTATAGCTAAAAAGAA+AGG + chr4_4:74255945-74255964 None:intergenic 15.0%
!! TTAGTAACTACTTAAAAATA+AGG + chr4_4:74256397-74256416 None:intergenic 15.0%
!!! TTTTTACTAACTTTATGTTT+TGG - chr4_4:74256685-74256704 Msa0702590:intron 15.0%
!! TAAAAAAAAAACAGTACATT+AGG + chr4_4:74257616-74257635 None:intergenic 15.0%
!!! TTTTTTTTTTTGACTAATAC+TGG + chr4_4:74258050-74258069 None:intergenic 15.0%
!! AAAAAAAAGGAGAAAAAAAA+AGG + chr4_4:74259063-74259082 None:intergenic 15.0%
!!! AAATACAAGGATTTTATAAA+GGG + chr4_4:74259191-74259210 None:intergenic 15.0%
!!! AAAATACAAGGATTTTATAA+AGG + chr4_4:74259192-74259211 None:intergenic 15.0%
!!! TTGTTCTTGTTTTTTGTTTA+TGG - chr4_4:74255806-74255825 Msa0702590:three_prime_UTR 20.0%
!!! TGTTCTTGTTTTTTGTTTAT+GGG - chr4_4:74255807-74255826 Msa0702590:three_prime_UTR 20.0%
!!! CAAAATAATACTATTTTCTG+TGG + chr4_4:74256028-74256047 None:intergenic 20.0%
!! CAAATTAAAGAAAGAAAGAA+AGG + chr4_4:74256071-74256090 None:intergenic 20.0%
!!! TTCTTTCTTTCTTTAATTTG+AGG - chr4_4:74256071-74256090 Msa0702590:CDS 20.0%
!!! TTTTTCAGTTCAAAATTGAA+TGG - chr4_4:74256130-74256149 Msa0702590:CDS 20.0%
!! AAAGTAGTTAAAGAAAAACT+GGG - chr4_4:74256338-74256357 Msa0702590:intron 20.0%
!! AAAAGCTACAATAAATGTTT+GGG - chr4_4:74257278-74257297 Msa0702590:intron 20.0%
!!! TAGAATTTGTTAGGAAAAAA+CGG + chr4_4:74257449-74257468 None:intergenic 20.0%
!!! GTTGAGTTTTTTTTTTTCTT+CGG + chr4_4:74258222-74258241 None:intergenic 20.0%
!!! GAATTTTGTTTGTTAATCAT+AGG + chr4_4:74258387-74258406 None:intergenic 20.0%
! TTAGAAAAAAGTAGTGACTT+AGG - chr4_4:74255616-74255635 Msa0702590:three_prime_UTR 25.0%
!!! AAGAGTGTTATTGTAGTTAT+GGG - chr4_4:74255763-74255782 Msa0702590:three_prime_UTR 25.0%
!!! GTTCTTGTTTTTTGTTTATG+GGG - chr4_4:74255808-74255827 Msa0702590:three_prime_UTR 25.0%
! TATAATTTATTTCACCCCTT+TGG - chr4_4:74255956-74255975 Msa0702590:CDS 25.0%
! ACATAAGAAAATGTTCCAAA+GGG + chr4_4:74255974-74255993 None:intergenic 25.0%
! AACATAAGAAAATGTTCCAA+AGG + chr4_4:74255975-74255994 None:intergenic 25.0%
!!! TTTTTTCCCCTTTCAATTTA+GGG + chr4_4:74256269-74256288 None:intergenic 25.0%
!!! TTTTTTTCCCCTTTCAATTT+AGG + chr4_4:74256270-74256289 None:intergenic 25.0%
! AAATTGAAAGGGGAAAAAAA+AGG - chr4_4:74256270-74256289 Msa0702590:CDS 25.0%
! TTCCATAAAACTCATCAAAA+GGG + chr4_4:74256296-74256315 None:intergenic 25.0%
! ATTCCATAAAACTCATCAAA+AGG + chr4_4:74256297-74256316 None:intergenic 25.0%
! GAAAGTAGTTAAAGAAAAAC+TGG - chr4_4:74256337-74256356 Msa0702590:intron 25.0%
!!! ACCATTTTAGTTTCTTCTTT+TGG - chr4_4:74257182-74257201 Msa0702590:CDS 25.0%
! ACCAAAAGAAGAAACTAAAA+TGG + chr4_4:74257186-74257205 None:intergenic 25.0%
! CAAAAGCTACAATAAATGTT+TGG - chr4_4:74257277-74257296 Msa0702590:intron 25.0%
! GTATCAAACATCATAACAAT+TGG + chr4_4:74257984-74258003 None:intergenic 25.0%
!!! ACTCAGAAAGATTTTTTTAC+TGG - chr4_4:74258111-74258130 Msa0702590:CDS 25.0%
! TGCACAATTATAAGAATAAC+AGG + chr4_4:74258278-74258297 None:intergenic 25.0%
! AAATATGAGAACAAGAAAGA+TGG + chr4_4:74258646-74258665 None:intergenic 25.0%
!! TTACTTTAGGAATATTCAAG+TGG - chr4_4:74258789-74258808 Msa0702590:intron 25.0%
! GGATTTATAATAACACTACT+AGG + chr4_4:74259017-74259036 None:intergenic 25.0%
! GGAGAAACAAATAAAATACA+AGG + chr4_4:74259204-74259223 None:intergenic 25.0%
! AAAATCACATAACACTAACT+AGG + chr4_4:74259272-74259291 None:intergenic 25.0%
TATATCCAAGCAACCTTAAA+GGG - chr4_4:74255686-74255705 Msa0702590:three_prime_UTR 30.0%
AGAAAAAAAACCTCCCTTTA+AGG + chr4_4:74255702-74255721 None:intergenic 30.0%
!!! AAAGGGAGGTTTTTTTTCTT+AGG - chr4_4:74255703-74255722 Msa0702590:three_prime_UTR 30.0%
!!! AAGGGAGGTTTTTTTTCTTA+GGG - chr4_4:74255704-74255723 Msa0702590:three_prime_UTR 30.0%
!!! GTTTTTTTTCTTAGGGTTTG+TGG - chr4_4:74255711-74255730 Msa0702590:three_prime_UTR 30.0%
!! GAAGAGTGTTATTGTAGTTA+TGG - chr4_4:74255762-74255781 Msa0702590:three_prime_UTR 30.0%
! TTATTGTAGTTATGGGTTGT+GGG - chr4_4:74255770-74255789 Msa0702590:three_prime_UTR 30.0%
CATAAGAAAATGTTCCAAAG+GGG + chr4_4:74255973-74255992 None:intergenic 30.0%
! TTTTTCCCCTTTCAATTTAG+GGG + chr4_4:74256268-74256287 None:intergenic 30.0%
TAGATAGATGATAGCAAGTT+TGG - chr4_4:74256431-74256450 Msa0702590:intron 30.0%
!! ATTTTGTGATCTTTGAGGAA+AGG + chr4_4:74256582-74256601 None:intergenic 30.0%
!! ACTTTTTGAGGAGAATAAGT+TGG - chr4_4:74256742-74256761 Msa0702590:intron 30.0%
AATCAAAACTGTATGCAGTT+CGG + chr4_4:74257099-74257118 None:intergenic 30.0%
! CTTCTTTTGGTCTAATTTTG+TGG - chr4_4:74257195-74257214 Msa0702590:CDS 30.0%
GGATTTCAATATCAAAACCA+GGG + chr4_4:74257428-74257447 None:intergenic 30.0%
! GCAAAGCATTAGAATTTGTT+AGG + chr4_4:74257458-74257477 None:intergenic 30.0%
CTTTGCTCTATATGATTAAC+AGG - chr4_4:74257472-74257491 Msa0702590:intron 30.0%
TTGTTATCACCGTATAAATC+TGG + chr4_4:74257503-74257522 None:intergenic 30.0%
AAACAAAAATGAAAGCCACA+AGG + chr4_4:74257570-74257589 None:intergenic 30.0%
!!! TTTTTTTGACTAATACTGGC+AGG + chr4_4:74258046-74258065 None:intergenic 30.0%
!!! AAAGATTTTTTTACTGGCAG+TGG - chr4_4:74258117-74258136 Msa0702590:CDS 30.0%
CCATGTCATGATAAAGAATT+TGG + chr4_4:74258190-74258209 None:intergenic 30.0%
CCAAATTCTTTATCATGACA+TGG - chr4_4:74258187-74258206 Msa0702590:intron 30.0%
! CTTTTCAAAGATCTATAAGG+TGG + chr4_4:74258249-74258268 None:intergenic 30.0%
! CGACTTTTCAAAGATCTATA+AGG + chr4_4:74258252-74258271 None:intergenic 30.0%
TTGAAGGACTATTAAGAATG+AGG + chr4_4:74258453-74258472 None:intergenic 30.0%
AACAGATATCACGATTTCAA+TGG + chr4_4:74258513-74258532 None:intergenic 30.0%
AATAATCTCAAAGCTCCAAA+AGG - chr4_4:74258823-74258842 Msa0702590:intron 30.0%
GTTTGAACATCATAACAGTT+TGG + chr4_4:74258871-74258890 None:intergenic 30.0%
AACTGTTATGATGTTCAAAC+AGG - chr4_4:74258871-74258890 Msa0702590:intron 30.0%
! TGACAATTTGCATTTTTACC+AGG + chr4_4:74258937-74258956 None:intergenic 30.0%
TACAAAGATTGAAGAGAAGA+AGG + chr4_4:74259038-74259057 None:intergenic 30.0%
!!! TTCTCCTTTTTTTTCTGTAG+TGG - chr4_4:74259069-74259088 Msa0702590:CDS 30.0%
CTTTCCACTACAGAAAAAAA+AGG + chr4_4:74259076-74259095 None:intergenic 30.0%
AATGCTTAGTAAGAGTGAGT+GGG - chr4_4:74255573-74255592 Msa0702590:three_prime_UTR 35.0%
GTATATCCAAGCAACCTTAA+AGG - chr4_4:74255685-74255704 Msa0702590:three_prime_UTR 35.0%
! GTTATTGTAGTTATGGGTTG+TGG - chr4_4:74255769-74255788 Msa0702590:three_prime_UTR 35.0%
CTAAAAAGAAAGGACCTGAA+TGG + chr4_4:74255935-74255954 None:intergenic 35.0%
CTCTTTCCCCTAAATTGAAA+GGG - chr4_4:74256259-74256278 Msa0702590:CDS 35.0%
TCTTTCCCCTAAATTGAAAG+GGG - chr4_4:74256260-74256279 Msa0702590:CDS 35.0%
CAATCTATAATATCCCCATC+TGG + chr4_4:74256525-74256544 None:intergenic 35.0%
! CCTGAATTTTGTGATCTTTG+AGG + chr4_4:74256587-74256606 None:intergenic 35.0%
CCTCAAAGATCACAAAATTC+AGG - chr4_4:74256584-74256603 Msa0702590:intron 35.0%
GTACTCCCATTAATCAACTA+TGG - chr4_4:74256786-74256805 Msa0702590:intron 35.0%
GCATGCCATAGTTGATTAAT+GGG + chr4_4:74256794-74256813 None:intergenic 35.0%
AGCATGCCATAGTTGATTAA+TGG + chr4_4:74256795-74256814 None:intergenic 35.0%
AATCAACTATGGCATGCTAA+TGG - chr4_4:74256797-74256816 Msa0702590:intron 35.0%
GATACCTATTAGGAGAACAA+AGG - chr4_4:74256838-74256857 Msa0702590:intron 35.0%
! CTTCTTCCTTCCATATCTTT+TGG + chr4_4:74256891-74256910 None:intergenic 35.0%
!!! CTGCATACAGTTTTGATTCA+TGG - chr4_4:74257101-74257120 Msa0702590:CDS 35.0%
! ACTTGTTGAACTGTTAGCTA+CGG - chr4_4:74257128-74257147 Msa0702590:CDS 35.0%
GTTGAAGGAGATAAGTTCTA+TGG - chr4_4:74257252-74257271 Msa0702590:intron 35.0%
! TCATTAGTCTGCTGTATCTT+TGG + chr4_4:74257306-74257325 None:intergenic 35.0%
AGTTCAGTTTGTCTCAGATT+TGG - chr4_4:74257325-74257344 Msa0702590:intron 35.0%
GTTCAGTTTGTCTCAGATTT+GGG - chr4_4:74257326-74257345 Msa0702590:intron 35.0%
TTGTCTCAGATTTGGGTATT+AGG - chr4_4:74257333-74257352 Msa0702590:intron 35.0%
AGAATCTCAAAACTAAACCC+TGG - chr4_4:74257408-74257427 Msa0702590:intron 35.0%
CGGATTTCAATATCAAAACC+AGG + chr4_4:74257429-74257448 None:intergenic 35.0%
! CAGGTTAGTCCAGATTTATA+CGG - chr4_4:74257491-74257510 Msa0702590:CDS 35.0%
GAATCTCGGTATGAAGAAAT+TGG + chr4_4:74257761-74257780 None:intergenic 35.0%
AAGTATGCTGATATCGTACT+GGG + chr4_4:74257783-74257802 None:intergenic 35.0%
TAAGTATGCTGATATCGTAC+TGG + chr4_4:74257784-74257803 None:intergenic 35.0%
ACGATATCAGCATACTTATC+TGG - chr4_4:74257786-74257805 Msa0702590:intron 35.0%
TATCAGCATACTTATCTGGA+AGG - chr4_4:74257790-74257809 Msa0702590:intron 35.0%
TCATATACCAGACACATAGT+TGG + chr4_4:74257905-74257924 None:intergenic 35.0%
TTGAAAGAATCCAAGCACTT+GGG + chr4_4:74257945-74257964 None:intergenic 35.0%
TTTGAAAGAATCCAAGCACT+TGG + chr4_4:74257946-74257965 None:intergenic 35.0%
AGACGTAACGTAAAGATTAG+CGG + chr4_4:74258321-74258340 None:intergenic 35.0%
! TCGTGATATTTGCTAGTAGT+AGG - chr4_4:74258413-74258432 Msa0702590:intron 35.0%
! CGTGATATTTGCTAGTAGTA+GGG - chr4_4:74258414-74258433 Msa0702590:intron 35.0%
ACTATTAAGAATGAGGTCGA+TGG + chr4_4:74258446-74258465 None:intergenic 35.0%
ACGATTTCAATGGTCTATGA+AGG + chr4_4:74258503-74258522 None:intergenic 35.0%
TCAACACACTTCAACTCAAA+TGG - chr4_4:74258726-74258745 Msa0702590:intron 35.0%
CAACACACTTCAACTCAAAT+GGG - chr4_4:74258727-74258746 Msa0702590:intron 35.0%
! CATTTTCCTGAAGAAGGATT+TGG - chr4_4:74258757-74258776 Msa0702590:intron 35.0%
! TTGGCAAAGCAAGTTACTTT+AGG - chr4_4:74258776-74258795 Msa0702590:intron 35.0%
GATGTTCAAACAGGTAGTAA+TGG - chr4_4:74258880-74258899 Msa0702590:intron 35.0%
! AAACAGGTAGTAATGGAGAT+TGG - chr4_4:74258887-74258906 Msa0702590:intron 35.0%
! AACAGGTAGTAATGGAGATT+GGG - chr4_4:74258888-74258907 Msa0702590:intron 35.0%
GTCCTCCATAGTAAAAGAAA+TGG + chr4_4:74258915-74258934 None:intergenic 35.0%
! TTTTGACAAACACTCCCATA+GGG + chr4_4:74259233-74259252 None:intergenic 35.0%
!! ATTTTGACAAACACTCCCAT+AGG + chr4_4:74259234-74259253 None:intergenic 35.0%
GAGTGTTTGTCAAAATGCAA+TGG - chr4_4:74259238-74259257 Msa0702590:intron 35.0%
CAATGCTTAGTAAGAGTGAG+TGG - chr4_4:74255572-74255591 Msa0702590:three_prime_UTR 40.0%
ATGCTTAGTAAGAGTGAGTG+GGG - chr4_4:74255574-74255593 Msa0702590:three_prime_UTR 40.0%
TGGTTCAAGACAGAAGTTTG+AGG - chr4_4:74255867-74255886 Msa0702590:three_prime_UTR 40.0%
CAAAATTGAATGGCCCTCTA+TGG - chr4_4:74256140-74256159 Msa0702590:CDS 40.0%
CCTTTCAATTTAGGGGAAAG+AGG + chr4_4:74256261-74256280 None:intergenic 40.0%
CCTCTTTCCCCTAAATTGAA+AGG - chr4_4:74256258-74256277 Msa0702590:CDS 40.0%
! GGCCCTTTTGATGAGTTTTA+TGG - chr4_4:74256291-74256310 Msa0702590:intron 40.0%
!! AAAGCTGGTTGCTTTGAAAC+AGG + chr4_4:74256552-74256571 None:intergenic 40.0%
AGGAAAGGATGATCAAAAGC+TGG + chr4_4:74256567-74256586 None:intergenic 40.0%
AGACCTAATTTCCATCCTGA+AGG - chr4_4:74256719-74256738 Msa0702590:intron 40.0%
AGTCCTTCAGGATGGAAATT+AGG + chr4_4:74256725-74256744 None:intergenic 40.0%
TTCTCCTCAAAAAGTCCTTC+AGG + chr4_4:74256737-74256756 None:intergenic 40.0%
ACCTATTAGGAGAACAAAGG+AGG - chr4_4:74256841-74256860 Msa0702590:intron 40.0%
TCCTCCTTTGTTCTCCTAAT+AGG + chr4_4:74256845-74256864 None:intergenic 40.0%
TATTAGGAGAACAAAGGAGG+AGG - chr4_4:74256844-74256863 Msa0702590:intron 40.0%
GCAAGTTCAGCCAAAAGATA+TGG - chr4_4:74256878-74256897 Msa0702590:intron 40.0%
GTTCAGCCAAAAGATATGGA+AGG - chr4_4:74256882-74256901 Msa0702590:intron 40.0%
GTAAAAACCGATGAGATACG+AGG - chr4_4:74257028-74257047 Msa0702590:intron 40.0%
AACATGACCTCGTATCTCAT+CGG + chr4_4:74257038-74257057 None:intergenic 40.0%
CATGCGATAGCATATGTTGA+AGG - chr4_4:74257237-74257256 Msa0702590:intron 40.0%
TCTCAGATTTGGGTATTAGG+AGG - chr4_4:74257336-74257355 Msa0702590:CDS 40.0%
TGGGTATTAGGAGGTTCATT+TGG - chr4_4:74257345-74257364 Msa0702590:CDS 40.0%
! GATCTTAACAGCATTGAAGC+TGG - chr4_4:74257372-74257391 Msa0702590:intron 40.0%
TATACGGTGATAACAACACG+AGG - chr4_4:74257507-74257526 Msa0702590:CDS 40.0%
AGTGATGCATATCAAGCTAC+TGG - chr4_4:74257665-74257684 Msa0702590:intron 40.0%
TGCTACAATCTTCTTTGCTC+AGG - chr4_4:74257689-74257708 Msa0702590:intron 40.0%
TGATATCGTACTGGGAATCT+CGG + chr4_4:74257775-74257794 None:intergenic 40.0%
TGGAAGGATTATGAGACATG+TGG + chr4_4:74257878-74257897 None:intergenic 40.0%
ACACATAGTTGGAACTTGGA+AGG + chr4_4:74257894-74257913 None:intergenic 40.0%
TGAAAGAATCCAAGCACTTG+GGG + chr4_4:74257944-74257963 None:intergenic 40.0%
ACAATTGGAAGAGAGATGCT+AGG + chr4_4:74257969-74257988 None:intergenic 40.0%
TCGGTAGAAACTCTTTCTCT+TGG - chr4_4:74258078-74258097 Msa0702590:CDS 40.0%
ACTCTTTCTCTTGGTACTCT+TGG - chr4_4:74258087-74258106 Msa0702590:CDS 40.0%
GTTACGTCTGTCAGAATTCA+AGG - chr4_4:74258332-74258351 Msa0702590:CDS 40.0%
GAAGCTCAATGGTATGAGTT+GGG + chr4_4:74258479-74258498 None:intergenic 40.0%
TGAAGCTCAATGGTATGAGT+TGG + chr4_4:74258480-74258499 None:intergenic 40.0%
TCTATGAAGGTGAAGCTCAA+TGG + chr4_4:74258490-74258509 None:intergenic 40.0%
TCATTGTAGGATCCGAAAGA+GGG - chr4_4:74258571-74258590 Msa0702590:intron 40.0%
TGGATGCAATTTGGGAATCA+AGG - chr4_4:74258601-74258620 Msa0702590:intron 40.0%
ACAGTGCTACCATGATTGAA+TGG - chr4_4:74258671-74258690 Msa0702590:intron 40.0%
CAGTGCTACCATGATTGAAT+GGG - chr4_4:74258672-74258691 Msa0702590:intron 40.0%
AGTGCTACCATGATTGAATG+GGG - chr4_4:74258673-74258692 Msa0702590:intron 40.0%
GTTGTTAATTCAGAGCCTGA+TGG - chr4_4:74258703-74258722 Msa0702590:intron 40.0%
ACTTCAACTCAAATGGGAAG+TGG - chr4_4:74258733-74258752 Msa0702590:intron 40.0%
!! AGTGGTCATTTTCCTGAAGA+AGG - chr4_4:74258751-74258770 Msa0702590:intron 40.0%
! ACAGGTAGTAATGGAGATTG+GGG - chr4_4:74258889-74258908 Msa0702590:intron 40.0%
! TGGGGCCATTTCTTTTACTA+TGG - chr4_4:74258907-74258926 Msa0702590:intron 40.0%
! GGCCATTTCTTTTACTATGG+AGG - chr4_4:74258910-74258929 Msa0702590:intron 40.0%
! TTCTTTTACTATGGAGGACC+TGG - chr4_4:74258916-74258935 Msa0702590:intron 40.0%
AGATTCTCCATGTAAGCAAG+TGG - chr4_4:74259125-74259144 Msa0702590:five_prime_UTR 40.0%
GTGTGGTCAAGTTTCTCAAA+AGG - chr4_4:74259152-74259171 Msa0702590:five_prime_UTR 40.0%
TCTCAAAAGGCTGAAGAAAC+AGG - chr4_4:74259165-74259184 Msa0702590:five_prime_UTR 40.0%
ATCCAAGCAACCTTAAAGGG+AGG - chr4_4:74255689-74255708 Msa0702590:three_prime_UTR 45.0%
!! AACCTCCCTTTAAGGTTGCT+TGG + chr4_4:74255694-74255713 None:intergenic 45.0%
TCTCAGCGTCTTCTTCAACT+AGG - chr4_4:74255839-74255858 Msa0702590:three_prime_UTR 45.0%
TCTTCTTCAACTAGGCTTGG+TGG - chr4_4:74255847-74255866 Msa0702590:three_prime_UTR 45.0%
!!! ACCTGAATGGTTTTGACTGG+AGG + chr4_4:74255922-74255941 None:intergenic 45.0%
!!! AGGACCTGAATGGTTTTGAC+TGG + chr4_4:74255925-74255944 None:intergenic 45.0%
! TTGTTGTTGCAGAGTCCAGA+TGG - chr4_4:74256507-74256526 Msa0702590:intron 45.0%
TGTTGTTGCAGAGTCCAGAT+GGG - chr4_4:74256508-74256527 Msa0702590:intron 45.0%
CCTCAAAAAGTCCTTCAGGA+TGG + chr4_4:74256733-74256752 None:intergenic 45.0%
! CCATCCTGAAGGACTTTTTG+AGG - chr4_4:74256730-74256749 Msa0702590:intron 45.0%
GCTAATGGTAAATGCTCCGA+AGG - chr4_4:74256812-74256831 Msa0702590:intron 45.0%
! CCTAATAGGTATCGTGCCTT+CGG + chr4_4:74256831-74256850 None:intergenic 45.0%
CCACTCTGGTTAACCAAATC+AGG + chr4_4:74256947-74256966 None:intergenic 45.0%
!! CCTGATTTGGTTAACCAGAG+TGG - chr4_4:74256944-74256963 Msa0702590:intron 45.0%
ATACGAGGTCATGTTCGAGT+TGG - chr4_4:74257043-74257062 Msa0702590:intron 45.0%
ACTGTATGCAGTTCGGATGT+TGG + chr4_4:74257092-74257111 None:intergenic 45.0%
! TTAACAGCATTGAAGCTGGC+TGG - chr4_4:74257376-74257395 Msa0702590:intron 45.0%
AAAGAGGCTTACTGTCCAGT+AGG + chr4_4:74257540-74257559 None:intergenic 45.0%
GCCTCTTTGTTCTAACCTTG+TGG - chr4_4:74257552-74257571 Msa0702590:CDS 45.0%
GCCACAAGGTTAGAACAAAG+AGG + chr4_4:74257556-74257575 None:intergenic 45.0%
AGTCAGCAGTGACATAGCAA+TGG - chr4_4:74257721-74257740 Msa0702590:intron 45.0%
GTCAGCAGTGACATAGCAAT+GGG - chr4_4:74257722-74257741 Msa0702590:intron 45.0%
CCAGACACATAGTTGGAACT+TGG + chr4_4:74257898-74257917 None:intergenic 45.0%
CCAAGTTCCAACTATGTGTC+TGG - chr4_4:74257895-74257914 Msa0702590:intron 45.0%
AAAGAATCCAAGCACTTGGG+GGG + chr4_4:74257942-74257961 None:intergenic 45.0%
GAAAGAATCCAAGCACTTGG+GGG + chr4_4:74257943-74257962 None:intergenic 45.0%
ACGTCTGTCAGAATTCAAGG+TGG - chr4_4:74258335-74258354 Msa0702590:CDS 45.0%
TCTCCACTTCCACTCATTGT+AGG - chr4_4:74258558-74258577 Msa0702590:intron 45.0%
GATCCTACAATGAGTGGAAG+TGG + chr4_4:74258564-74258583 None:intergenic 45.0%
CTTTCGGATCCTACAATGAG+TGG + chr4_4:74258570-74258589 None:intergenic 45.0%
CTCATTGTAGGATCCGAAAG+AGG - chr4_4:74258570-74258589 Msa0702590:intron 45.0%
CATTGTAGGATCCGAAAGAG+GGG - chr4_4:74258572-74258591 Msa0702590:intron 45.0%
!! AAGGTACCGTGTTGGGATAT+TGG - chr4_4:74258620-74258639 Msa0702590:intron 45.0%
AGATGGCCAATATCCCAACA+CGG + chr4_4:74258629-74258648 None:intergenic 45.0%
TTCTCCTCCCCATTCAATCA+TGG + chr4_4:74258683-74258702 None:intergenic 45.0%
! GTTGAAGTGTGTTGACCATC+AGG + chr4_4:74258721-74258740 None:intergenic 45.0%
GCTTTGCCAAATCCTTCTTC+AGG + chr4_4:74258766-74258785 None:intergenic 45.0%
CTCAAAGCTCCAAAAGGACT+TGG - chr4_4:74258829-74258848 Msa0702590:intron 45.0%
! GTGTAAGTGCCAAGTCCTTT+TGG + chr4_4:74258841-74258860 None:intergenic 45.0%
CACTTCTCCACTTGCTTACA+TGG + chr4_4:74259135-74259154 None:intergenic 45.0%
TGTAAGCAAGTGGAGAAGTG+TGG - chr4_4:74259135-74259154 Msa0702590:five_prime_UTR 45.0%
TGTTTCTCCACTTCTCCCTA+TGG - chr4_4:74259215-74259234 Msa0702590:five_prime_UTR 45.0%
GTTTCTCCACTTCTCCCTAT+GGG - chr4_4:74259216-74259235 Msa0702590:five_prime_UTR 45.0%
!! AAAAAAAATCAAAATAAAAA+TGG + chr4_4:74256670-74256689 None:intergenic 5.0%
AGGAAGAAGCAGAGAGAGAG+AGG - chr4_4:74255636-74255655 Msa0702590:three_prime_UTR 50.0%
GGAAGAAGCAGAGAGAGAGA+GGG - chr4_4:74255637-74255656 Msa0702590:three_prime_UTR 50.0%
AGGAGGGGTCATTAGGAAGA+AGG - chr4_4:74255662-74255681 Msa0702590:three_prime_UTR 50.0%
GGAGGGGTCATTAGGAAGAA+GGG - chr4_4:74255663-74255682 Msa0702590:three_prime_UTR 50.0%
! GTAGTTATGGGTTGTGGGTG+TGG - chr4_4:74255775-74255794 Msa0702590:three_prime_UTR 50.0%
GCGTCTTCTTCAACTAGGCT+TGG - chr4_4:74255844-74255863 Msa0702590:three_prime_UTR 50.0%
GCCTCCAGTCAAAACCATTC+AGG - chr4_4:74255918-74255937 Msa0702590:exon 50.0%
CAGCAGAAGCTTGCCATAGA+GGG + chr4_4:74256156-74256175 None:intergenic 50.0%
GTTGTTGCAGAGTCCAGATG+GGG - chr4_4:74256509-74256528 Msa0702590:intron 50.0%
! CCGAAGGCACGATACCTATT+AGG - chr4_4:74256828-74256847 Msa0702590:intron 50.0%
AAATCAGGCTCTGCTGACCT+CGG + chr4_4:74256932-74256951 None:intergenic 50.0%
GGTTAACCAGAGTGGTCATC+AGG - chr4_4:74256952-74256971 Msa0702590:intron 50.0%
GTCTTACCTGATGACCACTC+TGG + chr4_4:74256961-74256980 None:intergenic 50.0%
GTTCGGATGTTGGAGCAACT+CGG + chr4_4:74257082-74257101 None:intergenic 50.0%
ACACGAGGCTATTCACCTAC+TGG - chr4_4:74257522-74257541 Msa0702590:CDS 50.0%
CACTTGGGGGGACATTACAA+TGG + chr4_4:74257930-74257949 None:intergenic 50.0%
! GGTATGAGTTGGGACGTTGA+AGG + chr4_4:74258469-74258488 None:intergenic 50.0%
!! GGCACTGGTGGATGCAATTT+GGG - chr4_4:74258593-74258612 Msa0702590:intron 50.0%
!! TGGGAATCAAGGTACCGTGT+TGG - chr4_4:74258612-74258631 Msa0702590:intron 50.0%
!! GGGAATCAAGGTACCGTGTT+GGG - chr4_4:74258613-74258632 Msa0702590:intron 50.0%
GCTACCATGATTGAATGGGG+AGG - chr4_4:74258676-74258695 Msa0702590:intron 50.0%
AACACTCCCATAGGGAGAAG+TGG + chr4_4:74259225-74259244 None:intergenic 50.0%
AAGCAGAGAGAGAGAGGGAG+AGG - chr4_4:74255642-74255661 Msa0702590:three_prime_UTR 55.0%
AGAGAGAGAGAGGGAGAGGA+GGG - chr4_4:74255646-74255665 Msa0702590:three_prime_UTR 55.0%
GCAGCAGAAGCTTGCCATAG+AGG + chr4_4:74256157-74256176 None:intergenic 55.0%
ACAAGTCGTTCGCAAAGCCG+AGG - chr4_4:74256912-74256931 Msa0702590:intron 55.0%
GAGGTCAGCAGAGCCTGATT+TGG - chr4_4:74256931-74256950 Msa0702590:intron 55.0%
GTAATGTCCCCCCAAGTGCT+TGG - chr4_4:74257932-74257951 Msa0702590:CDS 55.0%
ATCCACCAGTGCCCCTCTTT+CGG + chr4_4:74258586-74258605 None:intergenic 55.0%
!! GGGCACTGGTGGATGCAATT+TGG - chr4_4:74258592-74258611 Msa0702590:intron 55.0%
CAGAGAGAGAGAGGGAGAGG+AGG - chr4_4:74255645-74255664 Msa0702590:three_prime_UTR 60.0%
GAGAGAGAGAGGGAGAGGAG+GGG - chr4_4:74255647-74255666 Msa0702590:three_prime_UTR 60.0%
GAGGGAGAGGAGGGGTCATT+AGG - chr4_4:74255655-74255674 Msa0702590:three_prime_UTR 60.0%
! CAGCATTGAAGCTGGCTGGC+AGG - chr4_4:74257380-74257399 Msa0702590:intron 60.0%
! AGGATCCGAAAGAGGGGCAC+TGG - chr4_4:74258578-74258597 Msa0702590:intron 60.0%
!! ATCCGAAAGAGGGGCACTGG+TGG - chr4_4:74258581-74258600 Msa0702590:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74255565 74259318 74255565 ID=Msa0702590;Name=Msa0702590
chr4_4 mRNA 74255565 74259318 74255565 ID=Msa0702590-mRNA-1;Parent=Msa0702590;Name=Msa0702590-mRNA-1;_AED=0.15;_eAED=0.15;_QI=190|1|1|1|0.85|0.75|8|358|416
chr4_4 exon 74255565 74256303 74255565 ID=Msa0702590-mRNA-1:exon:23102;Parent=Msa0702590-mRNA-1
chr4_4 exon 74257072 74257218 74257072 ID=Msa0702590-mRNA-1:exon:23101;Parent=Msa0702590-mRNA-1
chr4_4 exon 74257336 74257389 74257336 ID=Msa0702590-mRNA-1:exon:23100;Parent=Msa0702590-mRNA-1
chr4_4 exon 74257482 74257646 74257482 ID=Msa0702590-mRNA-1:exon:23099;Parent=Msa0702590-mRNA-1
chr4_4 exon 74257910 74258167 74257910 ID=Msa0702590-mRNA-1:exon:23098;Parent=Msa0702590-mRNA-1
chr4_4 exon 74258278 74258364 74258278 ID=Msa0702590-mRNA-1:exon:23097;Parent=Msa0702590-mRNA-1
chr4_4 exon 74258944 74259242 74258944 ID=Msa0702590-mRNA-1:exon:23096;Parent=Msa0702590-mRNA-1
chr4_4 exon 74259269 74259318 74259269 ID=Msa0702590-mRNA-1:exon:23095;Parent=Msa0702590-mRNA-1
chr4_4 five_prime_UTR 74259269 74259318 74259269 ID=Msa0702590-mRNA-1:five_prime_utr;Parent=Msa0702590-mRNA-1
chr4_4 five_prime_UTR 74259103 74259242 74259103 ID=Msa0702590-mRNA-1:five_prime_utr;Parent=Msa0702590-mRNA-1
chr4_4 CDS 74258944 74259102 74258944 ID=Msa0702590-mRNA-1:cds;Parent=Msa0702590-mRNA-1
chr4_4 CDS 74258278 74258364 74258278 ID=Msa0702590-mRNA-1:cds;Parent=Msa0702590-mRNA-1
chr4_4 CDS 74257910 74258167 74257910 ID=Msa0702590-mRNA-1:cds;Parent=Msa0702590-mRNA-1
chr4_4 CDS 74257482 74257646 74257482 ID=Msa0702590-mRNA-1:cds;Parent=Msa0702590-mRNA-1
chr4_4 CDS 74257336 74257389 74257336 ID=Msa0702590-mRNA-1:cds;Parent=Msa0702590-mRNA-1
chr4_4 CDS 74257072 74257218 74257072 ID=Msa0702590-mRNA-1:cds;Parent=Msa0702590-mRNA-1
chr4_4 CDS 74255923 74256303 74255923 ID=Msa0702590-mRNA-1:cds;Parent=Msa0702590-mRNA-1
chr4_4 three_prime_UTR 74255565 74255922 74255565 ID=Msa0702590-mRNA-1:three_prime_utr;Parent=Msa0702590-mRNA-1
Gene Sequence

>Msa0702590

ATGGGTTGTGGGTGTGGTGTTAGTGTTGTTCTTGTTTTTTGTTTATGGGGTGTTTTGATCTCAGCGTCTTCTTCAACTAGGCTTGGTGGTTCAAGACAGAAGTTTGAGGTTAACAAGCATTTGAATCGTCTTAACAAGCCTCCAGTCAAAACCATTCAGAGTCCAGATGGGGATATTATAGATTGTGTACCTGTTTCAAAGCAACCAGCTTTTGATCATCCTTTCCTCAAAGATCACAAAATTCAGATGAGACCTAATTTCCATCCTGAAGGACTTTTTGAGGAGAATAAGTTGGATGATAACAAAGAAAAATCAAGTACTCCCATTAATCAACTATGGCATGCTAATGGTAAATGCTCCGAAGGCACGATACCTATTAGGAGAACAAAGGAGGAGGATGTTCTAAGAGCAAGTTCAGCCAAAAGATATGGAAGGAAGAAGCACAAGTCGTTCGCAAAGCCGAGGTCAGCAGAGCCTGATTTGGTTAACCAGAGTGGTCATCAGCATGCGATAGCATATGTTGAAGGAGATAAGTTCTATGGAGCAAAAGCTACAATAAATGTTTGGGAACCAAAGATACAGCAGACTAATGAGTTCAGTTTGTCTCAGATTTGGGTATTAGGAGGTTCATTTGGTCAAGATCTTAACAGCATTGAAGCTGGCTGGCAGGTTAGTCCAGATTTATACGGTGATAACAACACGAGGCTATTCACCTACTGGACAAGTGATGCATATCAAGCTACTGGTTGCTACAATCTTCTTTGCTCAGGATTTATTCAAGTCAGCAGTGACATAGCAATGGGTGCAAGCATTTCTCCAATTTCTTCATACCGAGATTCCCAGTACGATATCAGCATACTTATCTGGAAGGATCCGAAAGAGGGGCACTGGTGGATGCAATTTGGGAATCAAGGTACCGTGTTGGGATATTGGCCATCTTTCTTGTTCTCATATTTAGCAGACAGTGCTACCATGATTGAATGGGGAGGAGAAGTTGTTAATTCAGAGCCTGATGGTCAACACACTTCAACTCAAATGGGAAGTGGTCATTTTCCTGAAGAAGGATTTGGCAAAGCAAGTTACTTTAGGAATATTCAAGTGGTTGATAGCTCTAATAATCTCAAAGCTCCAAAAGGACTTGGCACTTACACTGAACATCCAAACTGTTATGATGTTCAAACAGGTAGTAATGGAGATTGGGGCCATTTCTTTTACTATGGAGGACCTGGTAAAAATGCAAATTGTCAATGA

Protein sequence

>Msa0702590

MGCGCGVSVVLVFCLWGVLISASSSTRLGGSRQKFEVNKHLNRLNKPPVKTIQSPDGDIIDCVPVSKQPAFDHPFLKDHKIQMRPNFHPEGLFEENKLDDNKEKSSTPINQLWHANGKCSEGTIPIRRTKEEDVLRASSAKRYGRKKHKSFAKPRSAEPDLVNQSGHQHAIAYVEGDKFYGAKATINVWEPKIQQTNEFSLSQIWVLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVSSDIAMGASISPISSYRDSQYDISILIWKDPKEGHWWMQFGNQGTVLGYWPSFLFSYLADSATMIEWGGEVVNSEPDGQHTSTQMGSGHFPEEGFGKASYFRNIQVVDSSNNLKAPKGLGTYTEHPNCYDVQTGSNGDWGHFFYYGGPGKNANCQ*