AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1257880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257880 MtrunA17_Chr4g0056641 91.720 314 24 1 1 314 1 312 0.0 543
Msa1257880 MtrunA17_Chr7g0273571 34.234 111 65 2 167 269 13 123 1.80e-12 64.3
Msa1257880 MtrunA17_Chr4g0028001 34.259 108 63 2 170 269 69 176 9.49e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257880 AT1G12520.1 70.301 266 72 3 51 313 58 319 9.12e-138 393
Msa1257880 AT1G12520.2 76.754 228 52 1 87 313 1 228 1.37e-131 374
Msa1257880 AT1G12520.3 74.863 183 45 1 132 313 1 183 3.55e-101 295
Msa1257880 AT2G28190.1 35.833 120 68 3 159 269 67 186 4.69e-13 67.8
Msa1257880 AT1G08830.2 31.818 110 67 2 168 269 14 123 8.42e-11 60.1
Msa1257880 AT1G08830.1 31.818 110 67 2 168 269 14 123 8.42e-11 60.1

Find 87 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTCCAGCATTTCAAATT+TGG 0.151323 8_2:+58904892 Msa1257880:three_prime_UTR
CTCTCCTTCACCTGTCTTAA+TGG 0.182990 8_2:+58901559 Msa1257880:CDS
ACAAATAAATTCCACTAAAA+TGG 0.224246 8_2:+58901370 Msa1257880:exon
TTAGTTGATTCAAAATTATT+TGG 0.253746 8_2:+58905066 Msa1257880:three_prime_UTR
CTGAGAGTGGCTGATCTTAT+TGG 0.266810 8_2:+58904650 Msa1257880:CDS
AATCAGGTTGTTAGGATTCT+TGG 0.277482 8_2:+58902558 Msa1257880:CDS
TGTCACCAGGGAAGCATTCC+TGG 0.284728 8_2:+58904076 Msa1257880:CDS
TCCTGGTCTATTAATGAGTT+TGG 0.306150 8_2:+58904093 Msa1257880:CDS
GCTGGAGGGCTTGTTGGATT+TGG 0.327291 8_2:-58901516 None:intergenic
AAGGGTGAGGCCTTCTACAC+TGG 0.329684 8_2:+58904614 Msa1257880:CDS
ATTTGAGCAATCAGGTTGTT+AGG 0.331503 8_2:+58902550 Msa1257880:CDS
AGTTCTGATGAACTAATTTA+CGG 0.334345 8_2:+58904834 Msa1257880:exon
TTCTTTGACCCCAGTGTAGA+AGG 0.339109 8_2:-58904624 None:intergenic
TTGGAAGATAAGGCAGTGTT+TGG 0.351605 8_2:-58901491 None:intergenic
GACGAGGCTGGAGGGCTTGT+TGG 0.376252 8_2:-58901522 None:intergenic
TGACGGATTGAACACTTTAC+CGG 0.379266 8_2:-58904142 None:intergenic
AAATGTTAAGCCAGGGAATC+TGG 0.382447 8_2:-58905185 None:intergenic
TGGAAGATAAGGCAGTGTTT+GGG 0.387705 8_2:-58901490 None:intergenic
TCGCCTGGCTCAAGTAAGTA+TGG 0.403626 8_2:+58904020 Msa1257880:CDS
GTACCTGAGAAGAGAGATTA+TGG 0.408288 8_2:-58901583 None:intergenic
ATAAGGCAGTGTTTGGGGAT+TGG 0.410627 8_2:-58901484 None:intergenic
GGGCTTGTTGGATTTGGTGT+TGG 0.415583 8_2:-58901510 None:intergenic
GATGTTATAGACAGAGTATA+TGG 0.415903 8_2:+58901854 Msa1257880:intron
AACTTCAGTGGGCTGTCACC+AGG 0.418853 8_2:+58904063 Msa1257880:CDS
TGATGTGTTACCTGAGTTGC+TGG 0.424399 8_2:+58901709 Msa1257880:CDS
CATCTCCAAATTTGAAATGC+TGG 0.433972 8_2:-58904897 None:intergenic
TTAATGTTCATCAATTACTT+AGG 0.434343 8_2:+58905151 Msa1257880:three_prime_UTR
CCACTAAAATGGCATTTCTC+AGG 0.445276 8_2:+58901381 Msa1257880:exon
TCTTCAGCCACTTGGTGACC+TGG 0.447517 8_2:+58904571 Msa1257880:intron
ATAGACCAGGAATGCTTCCC+TGG 0.473850 8_2:-58904081 None:intergenic
CGTTCACATCCAGTGTTCCC+AGG 0.476668 8_2:-58904589 None:intergenic
TGATTGGATCTTCAGCCACT+TGG 0.478442 8_2:+58904563 Msa1257880:intron
TGATTCAAAATTATTTGGTA+AGG 0.480719 8_2:+58905071 Msa1257880:three_prime_UTR
GGACCATAATCTCTCTTCTC+AGG 0.485297 8_2:+58901580 Msa1257880:CDS
CATCAGTAATAGTAAACAAA+TGG 0.490584 8_2:-58905034 None:intergenic
GGATTTGGTGTTGGAAGATA+AGG 0.499397 8_2:-58901501 None:intergenic
TGTCTCTGAATTCAAAGGTC+CGG 0.504920 8_2:+58903981 Msa1257880:CDS
GTTCCATACTTACTTGAGCC+AGG 0.507267 8_2:-58904023 None:intergenic
TTAGTTCATCAGAACTTGCT+AGG 0.511807 8_2:-58904827 None:intergenic
TGTGTCACTCGCCTCCCATA+TGG 0.514090 8_2:-58904795 None:intergenic
ATGGTCTTGACCAGATTCCC+TGG 0.518198 8_2:+58905175 Msa1257880:three_prime_UTR
GTAATTTATTTGTCTTACTG+TGG 0.520062 8_2:+58904870 Msa1257880:three_prime_UTR
ACTTGGTGACCTGGGAACAC+TGG 0.521939 8_2:+58904580 Msa1257880:CDS
AGGAATCAAGAATGTGGAGG+TGG 0.522472 8_2:+58902527 Msa1257880:intron
GGAGGTGGATTTGAGCAATC+AGG 0.531013 8_2:+58902542 Msa1257880:CDS
GTTCATCAATTACTTAGGAA+TGG 0.537086 8_2:+58905156 Msa1257880:three_prime_UTR
AGGGTGAGGCCTTCTACACT+GGG 0.539540 8_2:+58904615 Msa1257880:CDS
CTTCAGCCACTTGGTGACCT+GGG 0.540096 8_2:+58904572 Msa1257880:intron
AGTGAAGCTTTGGAGCAGAC+TGG 0.542020 8_2:+58902603 Msa1257880:CDS
GGAAGATAAGGCAGTGTTTG+GGG 0.542427 8_2:-58901489 None:intergenic
CAGTAATAGTAAACAAATGG+TGG 0.549362 8_2:-58905031 None:intergenic
ACACTGGATGTGAACGAAAA+GGG 0.549598 8_2:+58904596 Msa1257880:CDS
AATAAGCTGCAAACAATCCA+TGG 0.550845 8_2:+58901915 Msa1257880:CDS
CATGTGATGGCACCACCATA+TGG 0.553031 8_2:+58904780 Msa1257880:CDS
AGATTATGGTCCATTAAGAC+AGG 0.555420 8_2:-58901569 None:intergenic
ATGTGATGGCACCACCATAT+GGG 0.558693 8_2:+58904781 Msa1257880:CDS
TGGTCCATTAAGACAGGTGA+AGG 0.563492 8_2:-58901563 None:intergenic
AACACTGGATGTGAACGAAA+AGG 0.566311 8_2:+58904595 Msa1257880:CDS
AAACGAGGAAAACACTAAAG+AGG 0.567123 8_2:+58904164 Msa1257880:CDS
TTAAAACTAACCAGCAACTC+AGG 0.568886 8_2:-58901719 None:intergenic
CATTAAGACAGGTGAAGGAG+AGG 0.584778 8_2:-58901558 None:intergenic
ACTAGAGGTGCAGCAAGCAC+CGG 0.584846 8_2:+58904123 Msa1257880:CDS
ACTTCAGTGGGCTGTCACCA+GGG 0.586367 8_2:+58904064 Msa1257880:CDS
AGTAATAGTAAACAAATGGT+GGG 0.586534 8_2:-58905030 None:intergenic
GAATTGAAGCAAACTTCAGT+GGG 0.590735 8_2:+58904052 Msa1257880:CDS
GCGGCTGTCTCTGAATTCAA+AGG 0.596170 8_2:+58903976 Msa1257880:CDS
AGAATTGAAGCAAACTTCAG+TGG 0.596475 8_2:+58904051 Msa1257880:CDS
CTCAGGTAACACATCATGAT+CGG 0.597257 8_2:-58901702 None:intergenic
ACACGGTATAGCTGCTGCAG+TGG 0.603121 8_2:+58904712 Msa1257880:CDS
GTTATAGACAGAGTATATGG+TGG 0.606271 8_2:+58901857 Msa1257880:intron
TATAGGAATCAAGAATGTGG+AGG 0.613868 8_2:+58902524 Msa1257880:intron
GGATGTGAACGAAAAGGGTG+AGG 0.614241 8_2:+58904601 Msa1257880:CDS
ACCAAACTCATTAATAGACC+AGG 0.615247 8_2:-58904094 None:intergenic
ATTGGACAAGGAGTGCCAGA+AGG 0.627026 8_2:+58902642 Msa1257880:CDS
TAGGATTCTTGGTTCAACAC+CGG 0.627780 8_2:+58902569 Msa1257880:CDS
GGTTGCTAGAAGTGCAGCAG+TGG 0.630108 8_2:+58904733 Msa1257880:CDS
GTCACTCGCCTCCCATATGG+TGG 0.633316 8_2:-58904792 None:intergenic
AAAGCTCGATTAATTGGACA+AGG 0.655932 8_2:+58902630 Msa1257880:CDS
GGTCAAAGAAAAGCTGAGAG+TGG 0.664417 8_2:+58904637 Msa1257880:CDS
ATGGTGGATATGAAATGCGA+AGG 0.670127 8_2:+58901873 Msa1257880:CDS
TGATGGCACCACCATATGGG+AGG 0.673765 8_2:+58904784 Msa1257880:CDS
AGTGTTCAATCCGTCAAACG+AGG 0.687984 8_2:+58904149 Msa1257880:CDS
GAGTTTGGTGATCTGACTAG+AGG 0.700866 8_2:+58904108 Msa1257880:CDS
GTTGCTAGAAGTGCAGCAGT+GGG 0.712487 8_2:+58904734 Msa1257880:CDS
ACTGAAGATAAATCAGAACA+CGG 0.722342 8_2:+58904695 Msa1257880:CDS
AGTGTTCCCAGGTCACCAAG+TGG 0.723488 8_2:-58904578 None:intergenic
GGGTGAGGCCTTCTACACTG+GGG 0.799147 8_2:+58904616 Msa1257880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAGAAAATAAAATATAAA+AGG - chr8_2:58901669-58901688 None:intergenic 10.0%
!! GTTATTTATAAACATTAAAA+TGG + chr8_2:58904266-58904285 Msa1257880:intron 10.0%
!!! CATAAATTATAGTTATTTTA+TGG + chr8_2:58904975-58904994 Msa1257880:three_prime_UTR 10.0%
!! AAAATAAGTTAAACAAAAAC+TGG + chr8_2:58901292-58901311 Msa1257880:five_prime_UTR 15.0%
!! AGAGGAATAATAAATAATTA+AGG - chr8_2:58901608-58901627 None:intergenic 15.0%
!! ATAAAATATAAAAGGATTAG+AGG - chr8_2:58901661-58901680 None:intergenic 15.0%
!! AAACAGAAAAAAAATGAAAT+TGG - chr8_2:58901757-58901776 None:intergenic 15.0%
!!! ATTTCATTTTTTTTCTGTTT+AGG + chr8_2:58901757-58901776 Msa1257880:intron 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG - chr8_2:58903046-58903065 None:intergenic 15.0%
!!! TTCTCTTTATTTGTATATAA+AGG - chr8_2:58903047-58903066 None:intergenic 15.0%
!! ATTCTATTATTTAACCTTAA+TGG + chr8_2:58903068-58903087 Msa1257880:intron 15.0%
!! TTCTATTATTTAACCTTAAT+GGG + chr8_2:58903069-58903088 Msa1257880:intron 15.0%
!! AATTAGGATTAAATAATAAG+AGG - chr8_2:58903095-58903114 None:intergenic 15.0%
!!! AATTCAATTAATTGTTTTCA+TGG + chr8_2:58903878-58903897 Msa1257880:intron 15.0%
!! TTATAAACATTAAAATGGAT+AGG + chr8_2:58904271-58904290 Msa1257880:intron 15.0%
!!! AATAGTTGAAATTGATATTT+TGG + chr8_2:58904398-58904417 Msa1257880:intron 15.0%
!!! TTAGTTGATTCAAAATTATT+TGG + chr8_2:58905066-58905085 Msa1257880:three_prime_UTR 15.0%
!! ACAAATAAATTCCACTAAAA+TGG + chr8_2:58901370-58901389 Msa1257880:exon 20.0%
!!! AAAACATTGAACTTTTGATT+TGG + chr8_2:58902311-58902330 Msa1257880:intron 20.0%
!!! TTATAGATGAATTTTGAGTA+TGG + chr8_2:58902730-58902749 Msa1257880:intron 20.0%
!!! CTCTTTATTTGTATATAAAG+GGG - chr8_2:58903045-58903064 None:intergenic 20.0%
!! TTATTAGTAAGTTGTCAATT+AGG - chr8_2:58903111-58903130 None:intergenic 20.0%
!! ATTAAATTTAAGAATATCCG+AGG - chr8_2:58903208-58903227 None:intergenic 20.0%
!! TAATTTATTTGGATGACAAT+TGG + chr8_2:58903224-58903243 Msa1257880:intron 20.0%
!!! AGCGTAAAAAAATTCTTTTA+AGG + chr8_2:58904224-58904243 Msa1257880:intron 20.0%
!!! TTATTAACCTTTTCTAAGTA+AGG + chr8_2:58904432-58904451 Msa1257880:intron 20.0%
!!! TATTAACCTTTTCTAAGTAA+GGG + chr8_2:58904433-58904452 Msa1257880:intron 20.0%
!! TGATTCAAAATTATTTGGTA+AGG + chr8_2:58905071-58905090 Msa1257880:three_prime_UTR 20.0%
!! TTAATGTTCATCAATTACTT+AGG + chr8_2:58905151-58905170 Msa1257880:three_prime_UTR 20.0%
! AATTAAGAGTGAAATTAGAG+AGG - chr8_2:58901626-58901645 None:intergenic 25.0%
! AAATATAAAAGGATTAGAGG+CGG - chr8_2:58901658-58901677 None:intergenic 25.0%
! GAATGAATAGATATGATTTC+AGG - chr8_2:58902338-58902357 None:intergenic 25.0%
! ACACAAATATGAAAATCTCA+GGG - chr8_2:58902476-58902495 None:intergenic 25.0%
! AACACAAATATGAAAATCTC+AGG - chr8_2:58902477-58902496 None:intergenic 25.0%
!!! TGTGCTCTCATTTTTTTTAT+AGG + chr8_2:58902507-58902526 Msa1257880:intron 25.0%
!! TTTTATAGGAATCAAGAATG+TGG + chr8_2:58902521-58902540 Msa1257880:intron 25.0%
! ATGATAGAGCAAGAAAAAAA+AGG - chr8_2:58902672-58902691 None:intergenic 25.0%
!! CTGTTTGCAATTTTTATGAT+AGG + chr8_2:58902697-58902716 Msa1257880:intron 25.0%
! ATAGCATAAACAAGAAGAAA+CGG + chr8_2:58902871-58902890 Msa1257880:intron 25.0%
! AGTAACAATAATAGTTGTAG+AGG + chr8_2:58902928-58902947 Msa1257880:intron 25.0%
! GTAACAATAATAGTTGTAGA+GGG + chr8_2:58902929-58902948 Msa1257880:intron 25.0%
! TAATTAGTAGGTGGTTAATT+AGG - chr8_2:58903144-58903163 None:intergenic 25.0%
! TGACAATTGGAGTATAATAT+TGG + chr8_2:58903237-58903256 Msa1257880:intron 25.0%
! ATACTTTCAATGTTAATGAC+AGG - chr8_2:58903545-58903564 None:intergenic 25.0%
!!! AAAAACATTGAAAGTATTGC+TGG + chr8_2:58903576-58903595 Msa1257880:intron 25.0%
!!! TCTATTTCATTCTAGCTTAT+TGG + chr8_2:58903625-58903644 Msa1257880:intron 25.0%
!! ATATTGTGTTTGTTAGACAA+TGG - chr8_2:58903659-58903678 None:intergenic 25.0%
!! GCTAGATGATTTATCAATTT+TGG + chr8_2:58903767-58903786 Msa1257880:intron 25.0%
! GCAACTAAACATATATTTAC+AGG - chr8_2:58903797-58903816 None:intergenic 25.0%
!! TTAATTGTTTTCATGGTTTC+AGG + chr8_2:58903885-58903904 Msa1257880:intron 25.0%
! TGTAAAGCAAAAGAAAGATT+CGG - chr8_2:58903941-58903960 None:intergenic 25.0%
!! TACAGACTTTTTAATATCAG+CGG + chr8_2:58903957-58903976 Msa1257880:intron 25.0%
!!! ATGAAACTTTTAATTCACGA+AGG + chr8_2:58904315-58904334 Msa1257880:intron 25.0%
! TTCTTAATGATGTATCCAAA+TGG + chr8_2:58904351-58904370 Msa1257880:intron 25.0%
! ACAATTTCAAACACAACTTA+AGG + chr8_2:58904532-58904551 Msa1257880:intron 25.0%
!! AGTTCTGATGAACTAATTTA+CGG + chr8_2:58904834-58904853 Msa1257880:exon 25.0%
! GTAATTTATTTGTCTTACTG+TGG + chr8_2:58904870-58904889 Msa1257880:three_prime_UTR 25.0%
! AGTAATAGTAAACAAATGGT+GGG - chr8_2:58905033-58905052 None:intergenic 25.0%
! CATCAGTAATAGTAAACAAA+TGG - chr8_2:58905037-58905056 None:intergenic 25.0%
! AACTGAGAAGATGCATTTTT+GGG - chr8_2:58901335-58901354 None:intergenic 30.0%
AGATGAAGAACAAAAAGCTA+AGG - chr8_2:58901438-58901457 None:intergenic 30.0%
GATGTTATAGACAGAGTATA+TGG + chr8_2:58901854-58901873 Msa1257880:intron 30.0%
CTAAAACAAAACACTTACCA+TGG - chr8_2:58901935-58901954 None:intergenic 30.0%
! GCGATATGCTTTAAGTTATT+AGG + chr8_2:58901978-58901997 Msa1257880:intron 30.0%
!! TTAAGTTATTAGGCCTTGTT+TGG + chr8_2:58901988-58902007 Msa1257880:intron 30.0%
TTAAACTGTGTATCCAAACA+AGG - chr8_2:58902004-58902023 None:intergenic 30.0%
GTGTTTGGTAAGTTATACAT+TGG - chr8_2:58902432-58902451 None:intergenic 30.0%
AAAAATCATGAGTGAAGCTT+TGG + chr8_2:58902593-58902612 Msa1257880:CDS 30.0%
GGTAAAAAAGCTCGATTAAT+TGG + chr8_2:58902624-58902643 Msa1257880:CDS 30.0%
CAACAGAGAATTAACACAAA+AGG - chr8_2:58902756-58902775 None:intergenic 30.0%
! CTTTTGTGTTAATTCTCTGT+TGG + chr8_2:58902754-58902773 Msa1257880:intron 30.0%
TATTGTCCTAACCTTCAATT+TGG - chr8_2:58902805-58902824 None:intergenic 30.0%
GGATGGTAATTTAGGAAAAT+AGG + chr8_2:58902892-58902911 Msa1257880:intron 30.0%
! CAGAATACGTTTTCTGTTTA+GGG - chr8_2:58902997-58903016 None:intergenic 30.0%
! ACAGAATACGTTTTCTGTTT+AGG - chr8_2:58902998-58903017 None:intergenic 30.0%
AAATAATAAGAGGCCCATTA+AGG - chr8_2:58903085-58903104 None:intergenic 30.0%
!! CGTTTTAAGTAATTAGTAGG+TGG - chr8_2:58903153-58903172 None:intergenic 30.0%
AATTGGAGTATAATATTGGC+AGG + chr8_2:58903241-58903260 Msa1257880:intron 30.0%
ATTTCTGTGACATACACAAA+AGG - chr8_2:58903398-58903417 None:intergenic 30.0%
!! TTGATAATGTGGATCACTAA+AGG - chr8_2:58903422-58903441 None:intergenic 30.0%
!! ATCATGTCTGATTGATAATG+TGG - chr8_2:58903433-58903452 None:intergenic 30.0%
GACGGTTTATACTATTATGA+CGG + chr8_2:58903496-58903515 Msa1257880:intron 30.0%
GCTACATTATCATCAAACTT+AGG + chr8_2:58903600-58903619 Msa1257880:intron 30.0%
ATTCAAAAACTGTTGAACCT+GGG - chr8_2:58903702-58903721 None:intergenic 30.0%
TATTCAAAAACTGTTGAACC+TGG - chr8_2:58903703-58903722 None:intergenic 30.0%
!!! CTTTTTGTTTTAACTGCAGT+AGG + chr8_2:58903743-58903762 Msa1257880:intron 30.0%
!! AAAGAAAGATTCGGTGAAAT+TGG - chr8_2:58903932-58903951 None:intergenic 30.0%
!! TTCTTTTAAGGATTGATGAC+TGG + chr8_2:58904236-58904255 Msa1257880:intron 30.0%
ATCAAATCCATTCAACCATT+TGG - chr8_2:58904369-58904388 None:intergenic 30.0%
TTATCACCCTTACTTAGAAA+AGG - chr8_2:58904442-58904461 None:intergenic 30.0%
ATTTCAAACACAACTTAAGG+AGG + chr8_2:58904535-58904554 Msa1257880:intron 30.0%
ACTGAAGATAAATCAGAACA+CGG + chr8_2:58904695-58904714 Msa1257880:CDS 30.0%
! CAGACACATTGTTTTCAAAA+TGG - chr8_2:58904939-58904958 None:intergenic 30.0%
CAGTAATAGTAAACAAATGG+TGG - chr8_2:58905034-58905053 None:intergenic 30.0%
GTTCATCAATTACTTAGGAA+TGG + chr8_2:58905156-58905175 Msa1257880:three_prime_UTR 30.0%
! ACTGAGAAGATGCATTTTTG+GGG - chr8_2:58901334-58901353 None:intergenic 35.0%
! GAACTGAGAAGATGCATTTT+TGG - chr8_2:58901336-58901355 None:intergenic 35.0%
AGATTATGGTCCATTAAGAC+AGG - chr8_2:58901572-58901591 None:intergenic 35.0%
TTAAAACTAACCAGCAACTC+AGG - chr8_2:58901722-58901741 None:intergenic 35.0%
GTTATAGACAGAGTATATGG+TGG + chr8_2:58901857-58901876 Msa1257880:intron 35.0%
AATAAGCTGCAAACAATCCA+TGG + chr8_2:58901915-58901934 Msa1257880:CDS 35.0%
TTAAAGCATATCGCATAAGC+AGG - chr8_2:58901972-58901991 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr8_2:58902113-58902132 Msa1257880:intron 35.0%
AAGCTATCTTGGAGAACTTA+TGG + chr8_2:58902124-58902143 Msa1257880:intron 35.0%
GAAAATGGGTCTATTTGGAT+CGG - chr8_2:58902264-58902283 None:intergenic 35.0%
AAGCAGAAAATGGGTCTATT+TGG - chr8_2:58902269-58902288 None:intergenic 35.0%
GTATGCTGAAAGCAGAAAAT+GGG - chr8_2:58902278-58902297 None:intergenic 35.0%
AGTATGCTGAAAGCAGAAAA+TGG - chr8_2:58902279-58902298 None:intergenic 35.0%
! TTTTCTGCTTTCAGCATACT+TGG + chr8_2:58902279-58902298 Msa1257880:intron 35.0%
TTTCTGCTTTCAGCATACTT+GGG + chr8_2:58902280-58902299 Msa1257880:intron 35.0%
TCAAAGCGAGTATGAATTTG+AGG + chr8_2:58902356-58902375 Msa1257880:intron 35.0%
CAAAGCGAGTATGAATTTGA+GGG + chr8_2:58902357-58902376 Msa1257880:intron 35.0%
AAAGCGAGTATGAATTTGAG+GGG + chr8_2:58902358-58902377 Msa1257880:intron 35.0%
TATAGGAATCAAGAATGTGG+AGG + chr8_2:58902524-58902543 Msa1257880:intron 35.0%
! ATTTGAGCAATCAGGTTGTT+AGG + chr8_2:58902550-58902569 Msa1257880:CDS 35.0%
! AATCAGGTTGTTAGGATTCT+TGG + chr8_2:58902558-58902577 Msa1257880:CDS 35.0%
! GCTTCACTCATGATTTTTAC+CGG - chr8_2:58902591-58902610 None:intergenic 35.0%
AAAGCTCGATTAATTGGACA+AGG + chr8_2:58902630-58902649 Msa1257880:CDS 35.0%
GAAAAAAAAGGTGAACCTTC+TGG - chr8_2:58902660-58902679 None:intergenic 35.0%
TTTCTGCCAAATTGAAGGTT+AGG + chr8_2:58902796-58902815 Msa1257880:intron 35.0%
AGGTTAGGACAATAGTTTAG+TGG + chr8_2:58902811-58902830 Msa1257880:intron 35.0%
AGTTTAGTGGTAGAAACCAA+AGG + chr8_2:58902824-58902843 Msa1257880:intron 35.0%
TGATTGATCACAAGATCCTT+TGG - chr8_2:58902843-58902862 None:intergenic 35.0%
CATAAACAAGAAGAAACGGA+TGG + chr8_2:58902875-58902894 Msa1257880:intron 35.0%
GAAGAAACGGATGGTAATTT+AGG + chr8_2:58902884-58902903 Msa1257880:intron 35.0%
!! GGGCGTTTTAAGTAATTAGT+AGG - chr8_2:58903156-58903175 None:intergenic 35.0%
TCACATTGGATCCTAACATT+AGG + chr8_2:58903178-58903197 Msa1257880:intron 35.0%
! TTTTCTTCAGCGTCTAATGA+CGG + chr8_2:58903478-58903497 Msa1257880:intron 35.0%
AAACACAATATACCCATCAG+AGG + chr8_2:58903668-58903687 Msa1257880:intron 35.0%
! TTCAAAGGTCCGGAAATTTT+TGG + chr8_2:58903991-58904010 Msa1257880:CDS 35.0%
CGAACAACACCAAAAATTTC+CGG - chr8_2:58904003-58904022 None:intergenic 35.0%
AGAATTGAAGCAAACTTCAG+TGG + chr8_2:58904051-58904070 Msa1257880:CDS 35.0%
GAATTGAAGCAAACTTCAGT+GGG + chr8_2:58904052-58904071 Msa1257880:CDS 35.0%
TCCTGGTCTATTAATGAGTT+TGG + chr8_2:58904093-58904112 Msa1257880:CDS 35.0%
ACCAAACTCATTAATAGACC+AGG - chr8_2:58904097-58904116 None:intergenic 35.0%
! TTAGTGTTTTCCTCGTTTGA+CGG - chr8_2:58904162-58904181 None:intergenic 35.0%
AAACGAGGAAAACACTAAAG+AGG + chr8_2:58904164-58904183 Msa1257880:CDS 35.0%
GATGTATCCAAATGGTTGAA+TGG + chr8_2:58904359-58904378 Msa1257880:intron 35.0%
CTAAGTAAGGGTGATAAAGT+TGG + chr8_2:58904445-58904464 Msa1257880:intron 35.0%
AAAAAGCTCTGTACATGTGA+TGG + chr8_2:58904767-58904786 Msa1257880:CDS 35.0%
! TTAGTTCATCAGAACTTGCT+AGG - chr8_2:58904830-58904849 None:intergenic 35.0%
! CATCTCCAAATTTGAAATGC+TGG - chr8_2:58904900-58904919 None:intergenic 35.0%
!! CTGAGAAGATGCATTTTTGG+GGG - chr8_2:58901333-58901352 None:intergenic 40.0%
!!! CCTGAGAAATGCCATTTTAG+TGG - chr8_2:58901384-58901403 None:intergenic 40.0%
CCACTAAAATGGCATTTCTC+AGG + chr8_2:58901381-58901400 Msa1257880:exon 40.0%
TGGAAGATAAGGCAGTGTTT+GGG - chr8_2:58901493-58901512 None:intergenic 40.0%
TTGGAAGATAAGGCAGTGTT+TGG - chr8_2:58901494-58901513 None:intergenic 40.0%
!! GGATTTGGTGTTGGAAGATA+AGG - chr8_2:58901504-58901523 None:intergenic 40.0%
!!! AGGTAGAGAATGTTTTGACG+AGG - chr8_2:58901541-58901560 None:intergenic 40.0%
GTACCTGAGAAGAGAGATTA+TGG - chr8_2:58901586-58901605 None:intergenic 40.0%
CTCAGGTAACACATCATGAT+CGG - chr8_2:58901705-58901724 None:intergenic 40.0%
!! ATGGTGGATATGAAATGCGA+AGG + chr8_2:58901873-58901892 Msa1257880:CDS 40.0%
! CAAACGAGTCTTATCGTGTT+TGG - chr8_2:58902447-58902466 None:intergenic 40.0%
TAGGATTCTTGGTTCAACAC+CGG + chr8_2:58902569-58902588 Msa1257880:CDS 40.0%
CGCAATTTCTGCCAAATTGA+AGG + chr8_2:58902791-58902810 Msa1257880:intron 40.0%
TGTTAGGATCCAATGTGAGA+GGG - chr8_2:58903176-58903195 None:intergenic 40.0%
ATGTTAGGATCCAATGTGAG+AGG - chr8_2:58903177-58903196 None:intergenic 40.0%
ATTGGATCCTAACATTAGGC+TGG + chr8_2:58903182-58903201 Msa1257880:intron 40.0%
! TGTGCAGAGATGCTGTTTAA+AGG - chr8_2:58903356-58903375 None:intergenic 40.0%
GACATACACAAAAGGATGCT+GGG - chr8_2:58903390-58903409 None:intergenic 40.0%
TGACATACACAAAAGGATGC+TGG - chr8_2:58903391-58903410 None:intergenic 40.0%
TGTCTCTGAATTCAAAGGTC+CGG + chr8_2:58903981-58904000 Msa1257880:CDS 40.0%
!!! AATTTTTGGTGTTGTTCGCC+TGG + chr8_2:58904005-58904024 Msa1257880:CDS 40.0%
!! TGACGGATTGAACACTTTAC+CGG - chr8_2:58904145-58904164 None:intergenic 40.0%
ACTTAAGGAGGTTGCTTGAT+TGG + chr8_2:58904547-58904566 Msa1257880:intron 40.0%
AACACTGGATGTGAACGAAA+AGG + chr8_2:58904595-58904614 Msa1257880:CDS 40.0%
ACACTGGATGTGAACGAAAA+GGG + chr8_2:58904596-58904615 Msa1257880:CDS 40.0%
GCTCTCCAGCATTTCAAATT+TGG + chr8_2:58904892-58904911 Msa1257880:three_prime_UTR 40.0%
!! GAAGATGCATTTTTGGGGGT+AGG - chr8_2:58901329-58901348 None:intergenic 45.0%
ATAAGGCAGTGTTTGGGGAT+TGG - chr8_2:58901487-58901506 None:intergenic 45.0%
GGAAGATAAGGCAGTGTTTG+GGG - chr8_2:58901492-58901511 None:intergenic 45.0%
!!! AATGTTTTGACGAGGCTGGA+GGG - chr8_2:58901533-58901552 None:intergenic 45.0%
!!! AGAGAATGTTTTGACGAGGC+TGG - chr8_2:58901537-58901556 None:intergenic 45.0%
CATTAAGACAGGTGAAGGAG+AGG - chr8_2:58901561-58901580 None:intergenic 45.0%
CTCTCCTTCACCTGTCTTAA+TGG + chr8_2:58901559-58901578 Msa1257880:CDS 45.0%
TGGTCCATTAAGACAGGTGA+AGG - chr8_2:58901566-58901585 None:intergenic 45.0%
GGACCATAATCTCTCTTCTC+AGG + chr8_2:58901580-58901599 Msa1257880:CDS 45.0%
TGATGTGTTACCTGAGTTGC+TGG + chr8_2:58901709-58901728 Msa1257880:CDS 45.0%
AGGAATCAAGAATGTGGAGG+TGG + chr8_2:58902527-58902546 Msa1257880:intron 45.0%
! TTTCTGTTTAGGGCCAGAGT+AGG - chr8_2:58902987-58903006 None:intergenic 45.0%
CTTAAAACGCCCTCTCACAT+TGG + chr8_2:58903164-58903183 Msa1257880:intron 45.0%
GGTGTGATATCTGTTCACTG+TGG + chr8_2:58903262-58903281 Msa1257880:intron 45.0%
ATATCTGTTCACTGTGGCCA+CGG + chr8_2:58903268-58903287 Msa1257880:intron 45.0%
GATATGTATCAGTGAGACCG+TGG - chr8_2:58903288-58903307 None:intergenic 45.0%
GTTCCATACTTACTTGAGCC+AGG - chr8_2:58904026-58904045 None:intergenic 45.0%
! GAGTTTGGTGATCTGACTAG+AGG + chr8_2:58904108-58904127 Msa1257880:CDS 45.0%
AGTGTTCAATCCGTCAAACG+AGG + chr8_2:58904149-58904168 Msa1257880:CDS 45.0%
TGATTGGATCTTCAGCCACT+TGG + chr8_2:58904563-58904582 Msa1257880:intron 45.0%
TTCTTTGACCCCAGTGTAGA+AGG - chr8_2:58904627-58904646 None:intergenic 45.0%
GGTCAAAGAAAAGCTGAGAG+TGG + chr8_2:58904637-58904656 Msa1257880:CDS 45.0%
CTGAGAGTGGCTGATCTTAT+TGG + chr8_2:58904650-58904669 Msa1257880:CDS 45.0%
ATGTGATGGCACCACCATAT+GGG + chr8_2:58904781-58904800 Msa1257880:CDS 45.0%
!! CATATAAAAATTAAAATAAT+TGG - chr8_2:58902398-58902417 None:intergenic 5.0%
!!! ATTCTTAAATTTAATTTATT+TGG + chr8_2:58903213-58903232 Msa1257880:intron 5.0%
!! GGGCTTGTTGGATTTGGTGT+TGG - chr8_2:58901513-58901532 None:intergenic 50.0%
!!! GAATGTTTTGACGAGGCTGG+AGG - chr8_2:58901534-58901553 None:intergenic 50.0%
! GGAGGTGGATTTGAGCAATC+AGG + chr8_2:58902542-58902561 Msa1257880:CDS 50.0%
!! AGTGAAGCTTTGGAGCAGAC+TGG + chr8_2:58902603-58902622 Msa1257880:CDS 50.0%
!! ATTGGACAAGGAGTGCCAGA+AGG + chr8_2:58902642-58902661 Msa1257880:CDS 50.0%
CTCGTAGAGTAAGCCTACTC+TGG + chr8_2:58902971-58902990 Msa1257880:intron 50.0%
!! TCCTAACATTAGGCTGGCCT+CGG + chr8_2:58903188-58903207 Msa1257880:intron 50.0%
TGGGCGTAATAGCCTCTGAT+GGG - chr8_2:58903683-58903702 None:intergenic 50.0%
GCGGCTGTCTCTGAATTCAA+AGG + chr8_2:58903976-58903995 Msa1257880:CDS 50.0%
TCGCCTGGCTCAAGTAAGTA+TGG + chr8_2:58904020-58904039 Msa1257880:CDS 50.0%
ATAGACCAGGAATGCTTCCC+TGG - chr8_2:58904084-58904103 None:intergenic 50.0%
GGATGTGAACGAAAAGGGTG+AGG + chr8_2:58904601-58904620 Msa1257880:CDS 50.0%
! GTTGCTAGAAGTGCAGCAGT+GGG + chr8_2:58904734-58904753 Msa1257880:CDS 50.0%
CATGTGATGGCACCACCATA+TGG + chr8_2:58904780-58904799 Msa1257880:CDS 50.0%
!! GCTGGAGGGCTTGTTGGATT+TGG - chr8_2:58901519-58901538 None:intergenic 55.0%
TCCGAGGCCAGCCTAATGTT+AGG - chr8_2:58903192-58903211 None:intergenic 55.0%
CTGGGCGTAATAGCCTCTGA+TGG - chr8_2:58903684-58903703 None:intergenic 55.0%
CATCAGAGGCTATTACGCCC+AGG + chr8_2:58903682-58903701 Msa1257880:intron 55.0%
!! AACTTCAGTGGGCTGTCACC+AGG + chr8_2:58904063-58904082 Msa1257880:CDS 55.0%
!! ACTTCAGTGGGCTGTCACCA+GGG + chr8_2:58904064-58904083 Msa1257880:CDS 55.0%
!! TGTCACCAGGGAAGCATTCC+TGG + chr8_2:58904076-58904095 Msa1257880:CDS 55.0%
! ACTAGAGGTGCAGCAAGCAC+CGG + chr8_2:58904123-58904142 Msa1257880:CDS 55.0%
! TCTTCAGCCACTTGGTGACC+TGG + chr8_2:58904571-58904590 Msa1257880:intron 55.0%
! CTTCAGCCACTTGGTGACCT+GGG + chr8_2:58904572-58904591 Msa1257880:intron 55.0%
AGTGTTCCCAGGTCACCAAG+TGG - chr8_2:58904581-58904600 None:intergenic 55.0%
! ACTTGGTGACCTGGGAACAC+TGG + chr8_2:58904580-58904599 Msa1257880:CDS 55.0%
CGTTCACATCCAGTGTTCCC+AGG - chr8_2:58904592-58904611 None:intergenic 55.0%
AAGGGTGAGGCCTTCTACAC+TGG + chr8_2:58904614-58904633 Msa1257880:CDS 55.0%
AGGGTGAGGCCTTCTACACT+GGG + chr8_2:58904615-58904634 Msa1257880:CDS 55.0%
ACACGGTATAGCTGCTGCAG+TGG + chr8_2:58904712-58904731 Msa1257880:CDS 55.0%
! GGTTGCTAGAAGTGCAGCAG+TGG + chr8_2:58904733-58904752 Msa1257880:CDS 55.0%
TGATGGCACCACCATATGGG+AGG + chr8_2:58904784-58904803 Msa1257880:CDS 55.0%
! TGTGTCACTCGCCTCCCATA+TGG - chr8_2:58904798-58904817 None:intergenic 55.0%
GGGTGAGGCCTTCTACACTG+GGG + chr8_2:58904616-58904635 Msa1257880:CDS 60.0%
GTCACTCGCCTCCCATATGG+TGG - chr8_2:58904795-58904814 None:intergenic 60.0%
GACGAGGCTGGAGGGCTTGT+TGG - chr8_2:58901525-58901544 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 58901270 58905194 58901270 ID=Msa1257880;Name=Msa1257880
chr8_2 mRNA 58901270 58905194 58901270 ID=Msa1257880-mRNA-1;Parent=Msa1257880;Name=Msa1257880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=119|1|1|1|1|1|6|353|314
chr8_2 exon 58901270 58901601 58901270 ID=Msa1257880-mRNA-1:exon:18224;Parent=Msa1257880-mRNA-1
chr8_2 exon 58901695 58901730 58901695 ID=Msa1257880-mRNA-1:exon:18225;Parent=Msa1257880-mRNA-1
chr8_2 exon 58901864 58901936 58901864 ID=Msa1257880-mRNA-1:exon:18226;Parent=Msa1257880-mRNA-1
chr8_2 exon 58902529 58902663 58902529 ID=Msa1257880-mRNA-1:exon:18227;Parent=Msa1257880-mRNA-1
chr8_2 exon 58903962 58904185 58903962 ID=Msa1257880-mRNA-1:exon:18228;Parent=Msa1257880-mRNA-1
chr8_2 exon 58904578 58905194 58904578 ID=Msa1257880-mRNA-1:exon:18229;Parent=Msa1257880-mRNA-1
chr8_2 five_prime_UTR 58901270 58901388 58901270 ID=Msa1257880-mRNA-1:five_prime_utr;Parent=Msa1257880-mRNA-1
chr8_2 CDS 58901389 58901601 58901389 ID=Msa1257880-mRNA-1:cds;Parent=Msa1257880-mRNA-1
chr8_2 CDS 58901695 58901730 58901695 ID=Msa1257880-mRNA-1:cds;Parent=Msa1257880-mRNA-1
chr8_2 CDS 58901864 58901936 58901864 ID=Msa1257880-mRNA-1:cds;Parent=Msa1257880-mRNA-1
chr8_2 CDS 58902529 58902663 58902529 ID=Msa1257880-mRNA-1:cds;Parent=Msa1257880-mRNA-1
chr8_2 CDS 58903962 58904185 58903962 ID=Msa1257880-mRNA-1:cds;Parent=Msa1257880-mRNA-1
chr8_2 CDS 58904578 58904841 58904578 ID=Msa1257880-mRNA-1:cds;Parent=Msa1257880-mRNA-1
chr8_2 three_prime_UTR 58904842 58905194 58904842 ID=Msa1257880-mRNA-1:three_prime_utr;Parent=Msa1257880-mRNA-1
Gene Sequence

>Msa1257880

ATGGCATTTCTCAGGTCAATAGCAGCAACAACAAGTGCTATTGCAACCTTAGCTTTTTGTTCTTCATCTTCTTCTTCTTCTTTCTCTCACTCTCACCAATCCCCAAACACTGCCTTATCTTCCAACACCAAATCCAACAAGCCCTCCAGCCTCGTCAAAACATTCTCTACCTCTCCTTCACCTGTCTTAATGGACCATAATCTCTCTTCTCAGACACAAACCGATCATGATGTGTTACCTGAGTTGCTGACAGAGTATATGGTGGATATGAAATGCGAAGGTTGTGTTAATGCTGTTAAGAATAAGCTGCAAACAATCCATGGAATCAAGAATGTGGAGGTGGATTTGAGCAATCAGGTTGTTAGGATTCTTGGTTCAACACCGGTAAAAATCATGAGTGAAGCTTTGGAGCAGACTGGTAAAAAAGCTCGATTAATTGGACAAGGAGTGCCAGAAGACTTTTTAATATCAGCGGCTGTCTCTGAATTCAAAGGTCCGGAAATTTTTGGTGTTGTTCGCCTGGCTCAAGTAAGTATGGAACTAGCTAGAATTGAAGCAAACTTCAGTGGGCTGTCACCAGGGAAGCATTCCTGGTCTATTAATGAGTTTGGTGATCTGACTAGAGGTGCAGCAAGCACCGGTAAAGTGTTCAATCCGTCAAACGAGGAAAACACTAAAGAGCCACTTGGTGACCTGGGAACACTGGATGTGAACGAAAAGGGTGAGGCCTTCTACACTGGGGTCAAAGAAAAGCTGAGAGTGGCTGATCTTATTGGACGAGCTGTTGTTGTGTATGCAACTGAAGATAAATCAGAACACGGTATAGCTGCTGCAGTGGTTGCTAGAAGTGCAGCAGTGGGTGAGAACTACAAAAAGCTCTGTACATGTGATGGCACCACCATATGGGAGGCGAGTGACACAGATTTTGTTCCTAGCAAGTTCTGA

Protein sequence

>Msa1257880

MAFLRSIAATTSAIATLAFCSSSSSSSFSHSHQSPNTALSSNTKSNKPSSLVKTFSTSPSPVLMDHNLSSQTQTDHDVLPELLTEYMVDMKCEGCVNAVKNKLQTIHGIKNVEVDLSNQVVRILGSTPVKIMSEALEQTGKKARLIGQGVPEDFLISAAVSEFKGPEIFGVVRLAQVSMELARIEANFSGLSPGKHSWSINEFGDLTRGAASTGKVFNPSNEENTKEPLGDLGTLDVNEKGEAFYTGVKEKLRVADLIGRAVVVYATEDKSEHGIAAAVVARSAAVGENYKKLCTCDGTTIWEASDTDFVPSKF*