AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1171030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171030 MtrunA17_Chr4g0028001 98.544 206 3 0 1 206 1 206 2.40e-147 407
Msa1171030 MtrunA17_Chr7g0273571 68.919 148 46 0 56 203 3 150 4.81e-71 213
Msa1171030 MtrunA17_Chr6g0461291 60.403 149 58 1 56 203 9 157 9.95e-58 179
Msa1171030 MtrunA17_Chr4g0056641 35.537 121 67 4 57 176 157 267 1.96e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171030 AT2G28190.1 72.986 211 48 2 3 206 8 216 1.72e-102 295
Msa1171030 AT1G08830.2 66.892 148 49 0 56 203 3 150 3.32e-67 203
Msa1171030 AT1G08830.1 66.892 148 49 0 56 203 3 150 3.32e-67 203
Msa1171030 AT5G18100.1 60.135 148 59 0 56 203 9 156 4.81e-61 188
Msa1171030 AT5G18100.2 58.730 126 52 0 56 181 9 134 1.55e-48 155
Msa1171030 AT1G12520.3 37.190 121 67 3 57 177 28 139 1.77e-14 68.9
Msa1171030 AT1G12520.1 37.190 121 67 3 57 177 164 275 4.82e-14 69.7
Msa1171030 AT1G12520.2 37.190 121 67 3 57 177 73 184 5.42e-14 68.6

Find 81 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTGCAACAGCTTTCT+TGG 0.257195 8_1:+505357 None:intergenic
GGCCTTACTCCAGGGCTTCA+TGG 0.278416 8_1:-504506 Msa1171030:CDS
AACGGAGAGAGGCTGGAATT+TGG 0.292602 8_1:+505390 None:intergenic
GGCTCTCCCAATGACTGAAT+TGG 0.294518 8_1:+503827 None:intergenic
GAAAGCTGTTGCAGTTCTTA+AGG 0.327591 8_1:-505353 Msa1171030:CDS
GCTCTCCCAATGACTGAATT+GGG 0.359785 8_1:+503828 None:intergenic
GCATGACGGATTTCATCTTC+AGG 0.389426 8_1:+504187 None:intergenic
TTTATCTTGCAGCACGAGTA+TGG 0.392047 8_1:-504387 Msa1171030:intron
AAAGCTGTTGCAGTTCTTAA+GGG 0.393106 8_1:-505352 Msa1171030:CDS
AGCGTTTGTAGCATTTATAC+TGG 0.397586 8_1:+502151 None:intergenic
GGCAACAATCGTTGACAATC+AGG 0.399165 8_1:-504030 Msa1171030:intron
CGTATCACTGGCCTTACTCC+AGG 0.406214 8_1:-504515 Msa1171030:CDS
TTGTTAGGTGCATGAAGATT+AGG 0.415191 8_1:+505527 None:intergenic
GAGTGAGAAGTGAGTGGCGA+AGG 0.415982 8_1:+505481 None:intergenic
TATGTGATATTTGATTTCTT+CGG 0.417094 8_1:-502107 Msa1171030:three_prime_UTR
ACTGGCCCCAATTCAGTCAT+TGG 0.417542 8_1:-503834 Msa1171030:CDS
CAGGAGCACCGTGTGTCAAC+TGG 0.432832 8_1:+504206 None:intergenic
AATCCGTCATGCGGGTGACC+TGG 0.434387 8_1:-504176 Msa1171030:CDS
AACCATGAAGCCCTGGAGTA+AGG 0.443025 8_1:+504504 None:intergenic
CAGCAACAACGGAGAGAGGC+TGG 0.455953 8_1:+505383 None:intergenic
GCACCGTGTGTCAACTGGTT+AGG 0.459986 8_1:+504211 None:intergenic
AGTCATTGGGAGAGCCTTAG+TGG 0.466496 8_1:-503820 Msa1171030:CDS
AAGGGTAACTCCACTGTTGA+AGG 0.471786 8_1:-505334 Msa1171030:CDS
CTGGCCCCAATTCAGTCATT+GGG 0.477587 8_1:-503833 Msa1171030:CDS
CCATCAAGCTTCACAAAACA+AGG 0.483848 8_1:+502080 None:intergenic
TTGATTGTTTCAGGTGTGGT+TGG 0.496252 8_1:-502181 Msa1171030:intron
CTTGAAGATGACCTTGGAAA+GGG 0.496504 8_1:-503789 Msa1171030:intron
CATCAGCAATTATGTTTCCC+AGG 0.498669 8_1:+504158 None:intergenic
ACAGTCAATGTTCGTATCAC+TGG 0.500510 8_1:-504527 Msa1171030:CDS
ATCACATAAAATAACATGGC+TGG 0.507386 8_1:+502122 None:intergenic
ATACGAACATTGACTGTTGT+TGG 0.508293 8_1:+504533 None:intergenic
ATGATAAATCTCTCTGGTAC+AGG 0.510009 8_1:+501964 None:intergenic
ATCGGTTTACACACTCATCT+AGG 0.511219 8_1:+502004 None:intergenic
CTGGAATTTGGAACGCGAAA+GGG 0.512711 8_1:+505402 None:intergenic
AAGTAGGTTATTTCACAAGC+AGG 0.514145 8_1:+501887 None:intergenic
CTTCTCCGATCATCTTTCTC+CGG 0.517355 8_1:-505457 Msa1171030:CDS
GAGAGTGTGACGCCATTGTT+AGG 0.519424 8_1:+505512 None:intergenic
GACTGCATGATAAATCTCTC+TGG 0.520913 8_1:+501958 None:intergenic
GAGAGATTTATCATGCAGTC+AGG 0.526100 8_1:-501955 Msa1171030:three_prime_UTR
ATCCGTCATGCGGGTGACCT+GGG 0.530041 8_1:-504175 Msa1171030:CDS
CGCGAAAGGGTTGAGAATTG+AGG 0.534704 8_1:+505415 None:intergenic
AGTTTGAGCACTGGAAATGC+CGG 0.542289 8_1:-503467 Msa1171030:CDS
CATGAACTTAGTTTGAGCAC+TGG 0.549851 8_1:-503476 Msa1171030:CDS
GTATCACTGGCCTTACTCCA+GGG 0.550072 8_1:-504514 Msa1171030:CDS
AGGTGAAAACCATGAAGCCC+TGG 0.553380 8_1:+504497 None:intergenic
ACCAATGGGTGTATCTCGAC+AGG 0.554865 8_1:-504357 Msa1171030:intron
TTCAAGCTCATGAACCACTA+AGG 0.558296 8_1:+503806 None:intergenic
CATGAGCTTGAAGATGACCT+TGG 0.559793 8_1:-503795 Msa1171030:CDS
ATCAATGTAAATTATCAAGT+AGG 0.562867 8_1:+501871 None:intergenic
GAAGATGAAATCCGTCATGC+GGG 0.564092 8_1:-504184 Msa1171030:CDS
GCTGGAATTTGGAACGCGAA+AGG 0.574919 8_1:+505401 None:intergenic
ACCTGTCGAGATACACCCAT+TGG 0.575585 8_1:+504356 None:intergenic
AGAGAGCTTGACGGAGACGC+CGG 0.577978 8_1:+505438 None:intergenic
AGTAACAACACCTTCAACAG+TGG 0.579962 8_1:+505324 None:intergenic
GCTTGAAGATGACCTTGGAA+AGG 0.581249 8_1:-503790 Msa1171030:CDS
GAATTGAGGAGAGAGCTTGA+CGG 0.581862 8_1:+505429 None:intergenic
AACATAATTGCTGATGCCAA+CGG 0.589398 8_1:-504151 Msa1171030:intron
GGATGAACTAACCCTTTCCA+AGG 0.593520 8_1:+503778 None:intergenic
GAGTATGGTGATACCACCAA+TGG 0.595372 8_1:-504372 Msa1171030:CDS
AGTATGGTGATACCACCAAT+GGG 0.608769 8_1:-504371 Msa1171030:CDS
GTGAAACACAGGCGTTGCAG+AGG 0.609173 8_1:-504051 Msa1171030:intron
TTTCTTGGCAGCAGCAACAA+CGG 0.616837 8_1:+505372 None:intergenic
GCAGCAGCAACAACGGAGAG+AGG 0.618791 8_1:+505379 None:intergenic
TGTCGAGATACACCCATTGG+TGG 0.618804 8_1:+504359 None:intergenic
CTCTCCCAATGACTGAATTG+GGG 0.619637 8_1:+503829 None:intergenic
ACCACAGGCTAATCTTCCAC+CGG 0.621370 8_1:+503448 None:intergenic
AATCTTCATGCACCTAACAA+TGG 0.624185 8_1:-505524 Msa1171030:exon
AATCCTAACCAGTTGACACA+CGG 0.627360 8_1:-504214 Msa1171030:CDS
TTCCCAGGTCACCCGCATGA+CGG 0.629118 8_1:+504173 None:intergenic
TGAAGATGAAATCCGTCATG+CGG 0.631482 8_1:-504185 Msa1171030:CDS
ATCATGCAGATACCACTCAC+TGG 0.633823 8_1:-503852 Msa1171030:intron
AAATATCACATAAAATAACA+TGG 0.636187 8_1:+502118 None:intergenic
AGACGCCGGAGAAAGATGAT+CGG 0.638557 8_1:+505452 None:intergenic
TTGAGCACTGGAAATGCCGG+TGG 0.645778 8_1:-503464 Msa1171030:CDS
AACCGATCATGAAAACACAT+TGG 0.645904 8_1:-501988 Msa1171030:three_prime_UTR
AGAAGAGAGTGAGAAGTGAG+TGG 0.648773 8_1:+505475 None:intergenic
ACTGAATTGGGGCCAGTGAG+TGG 0.664251 8_1:+503840 None:intergenic
GCCGGTGGAAGATTAGCCTG+TGG 0.696428 8_1:-503449 Msa1171030:intron
ACTCTTACTCAAGAAAACGA+AGG 0.698943 8_1:-505304 Msa1171030:intron
CATCAAGCTTCACAAAACAA+GGG 0.714526 8_1:+502081 None:intergenic
AACTGGTTAGGATTGAAATG+TGG 0.750548 8_1:+504223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATAAATATATAAAA+TGG + chr8_1:503809-503828 None:intergenic 0.0%
!!! TTTTTTGTTTTCCAAATTTT+TGG + chr8_1:501899-501918 None:intergenic 15.0%
!!! ACTGTTTTAATATAATCTAT+AGG - chr8_1:502565-502584 Msa1171030:intron 15.0%
!! ATCTAATAATCTTATGAAAA+CGG + chr8_1:502660-502679 None:intergenic 15.0%
!!! AACTAAATAAACAATTTTGA+AGG + chr8_1:503116-503135 None:intergenic 15.0%
!!! TTATTTTCCTCTAAAAAATA+TGG - chr8_1:503150-503169 Msa1171030:intron 15.0%
!!! AAATATAAAGGTACAAAAAA+TGG + chr8_1:503254-503273 None:intergenic 15.0%
!! CAATAACATAATATTAATCT+AGG - chr8_1:504518-504537 Msa1171030:CDS 15.0%
!! TCGATATCTTTAAATTAAAA+GGG - chr8_1:504648-504667 Msa1171030:intron 15.0%
!! AAATATCACATAAAATAACA+TGG + chr8_1:505448-505467 None:intergenic 15.0%
!!! TCAGAAATCAAATTTTATTA+GGG + chr8_1:505642-505661 None:intergenic 15.0%
!!! ATCAGAAATCAAATTTTATT+AGG + chr8_1:505643-505662 None:intergenic 15.0%
!! ATCAATTATCGATAATAGTT+TGG - chr8_1:502323-502342 Msa1171030:intron 20.0%
!! GATTATGAGTAATTGAAATT+TGG - chr8_1:502367-502386 Msa1171030:intron 20.0%
!! AATGCATTATGAATCTTTAT+AGG - chr8_1:502402-502421 Msa1171030:intron 20.0%
!!! TTATGAATCTTTATAGGTTT+TGG - chr8_1:502408-502427 Msa1171030:intron 20.0%
!!! TATGAATCTTTATAGGTTTT+GGG - chr8_1:502409-502428 Msa1171030:intron 20.0%
!!! TAAAACACCATATTTTTTAG+AGG + chr8_1:503160-503179 None:intergenic 20.0%
!! CCATTATCTATTGTTTATTT+GGG + chr8_1:503891-503910 None:intergenic 20.0%
!! AATAATTGAAGATCATGAAA+AGG + chr8_1:504173-504192 None:intergenic 20.0%
!! AACATATAAGCATTTAAGTA+TGG + chr8_1:504196-504215 None:intergenic 20.0%
!!! ATATATGCTTTTTAGAATTG+TGG - chr8_1:504495-504514 Msa1171030:intron 20.0%
!! CTCGATATCTTTAAATTAAA+AGG - chr8_1:504647-504666 Msa1171030:intron 20.0%
!!! ACATAATATTTGGTGTTAAA+AGG - chr8_1:504826-504845 Msa1171030:intron 20.0%
!!! TTATCATCTCATTTTAAAGT+TGG - chr8_1:504886-504905 Msa1171030:intron 20.0%
!! AGGTTATTATTATACAGTAA+GGG + chr8_1:504973-504992 None:intergenic 20.0%
!!! TATGTGATATTTGATTTCTT+CGG - chr8_1:505456-505475 Msa1171030:CDS 20.0%
!! ATCAATGTAAATTATCAAGT+AGG + chr8_1:505695-505714 None:intergenic 20.0%
!!! TCGATAATTGATAACGAAAA+TGG + chr8_1:502315-502334 None:intergenic 25.0%
!!! CGATAATAGTTTGGTTTTTT+TGG - chr8_1:502332-502351 Msa1171030:intron 25.0%
! ATATGAACTTGTCTTGATTT+GGG - chr8_1:502450-502469 Msa1171030:intron 25.0%
!!! TAATTAAGAAGAGCATGTTT+TGG + chr8_1:502907-502926 None:intergenic 25.0%
!!! TGTAGCTATTTGTTTTTTTG+TGG - chr8_1:502997-503016 Msa1171030:intron 25.0%
!!! ATAAACAATTTTGAAGGAAG+AGG + chr8_1:503110-503129 None:intergenic 25.0%
! AAAAAATGGAAACTAAGGTT+AGG + chr8_1:503240-503259 None:intergenic 25.0%
!! ACCTTTATATTTTGTTCCTA+TGG - chr8_1:503262-503281 Msa1171030:intron 25.0%
! ACCATAGGAACAAAATATAA+AGG + chr8_1:503266-503285 None:intergenic 25.0%
!! TATATTTTGTTCCTATGGTT+TGG - chr8_1:503267-503286 Msa1171030:intron 25.0%
! ATTGTTTATTTGGGTAATAC+AGG + chr8_1:503882-503901 None:intergenic 25.0%
! CCCAAATAAACAATAGATAA+TGG - chr8_1:503888-503907 Msa1171030:intron 25.0%
! GCCATTATCTATTGTTTATT+TGG + chr8_1:503892-503911 None:intergenic 25.0%
! GAATGACATGAATATGAAAT+TGG - chr8_1:503929-503948 Msa1171030:intron 25.0%
!!! TAACTGCAGTATTTTTACTT+TGG - chr8_1:504029-504048 Msa1171030:intron 25.0%
! TTTAAGTCTTTGAATAAGCT+TGG - chr8_1:504326-504345 Msa1171030:intron 25.0%
! TAACATTTAGCAACATATAC+AGG + chr8_1:504418-504437 None:intergenic 25.0%
! TGTATATGTTGCTAAATGTT+AGG - chr8_1:504417-504436 Msa1171030:intron 25.0%
!!! AGATACTTCCTAGTTTTAAT+TGG + chr8_1:504549-504568 None:intergenic 25.0%
! ATAAATGTAATCCCTATACT+CGG + chr8_1:504761-504780 None:intergenic 25.0%
! ATGTCTCGAAACATAATATT+TGG - chr8_1:504816-504835 Msa1171030:intron 25.0%
!!! ATCTCATTTTAAAGTTGGAT+TGG - chr8_1:504891-504910 Msa1171030:intron 25.0%
! CAGGTTATTATTATACAGTA+AGG + chr8_1:504974-504993 None:intergenic 25.0%
!!! AGGATATTGTTTTTAAAAGC+AGG + chr8_1:504993-505012 None:intergenic 25.0%
! CAAGTATTAATTAGTGACAT+AGG + chr8_1:505043-505062 None:intergenic 25.0%
! TGAGCATGTTAATTTAGATA+AGG - chr8_1:505174-505193 Msa1171030:intron 25.0%
! GAGCATGTTAATTTAGATAA+GGG - chr8_1:505175-505194 Msa1171030:intron 25.0%
! AGCATGTTAATTTAGATAAG+GGG - chr8_1:505176-505195 Msa1171030:intron 25.0%
! TAAGAATTGGACTATTGAAT+AGG + chr8_1:505255-505274 None:intergenic 25.0%
! AGTCCAATTCTTAAAAGTTA+TGG - chr8_1:505262-505281 Msa1171030:intron 25.0%
!! ATCAAATTTTATTAGGGAGA+AGG + chr8_1:505636-505655 None:intergenic 25.0%
!! CATGTTCTTAGATTTTTCGA+TGG + chr8_1:501876-501895 None:intergenic 30.0%
CTAAGAACATGCCAAAAATT+TGG - chr8_1:501885-501904 Msa1171030:three_prime_UTR 30.0%
AACGAAAATGGAGAATTGAA+CGG + chr8_1:502303-502322 None:intergenic 30.0%
!!! GTTTTTTTGGTTAGTGAGAA+TGG - chr8_1:502345-502364 Msa1171030:intron 30.0%
CATATGAACTTGTCTTGATT+TGG - chr8_1:502449-502468 Msa1171030:intron 30.0%
AAGTTATTCCATAGAGCTTA+TGG - chr8_1:502775-502794 Msa1171030:intron 30.0%
TCTTAAGTATACTGTATACG+TGG - chr8_1:502937-502956 Msa1171030:intron 30.0%
!!! TTGTTTTTTTGTGGATGAGT+AGG - chr8_1:503006-503025 Msa1171030:intron 30.0%
GGTACAAAAAATGGAAACTA+AGG + chr8_1:503245-503264 None:intergenic 30.0%
! GCTTCTTGAATCTCTTATTT+AGG - chr8_1:503316-503335 Msa1171030:intron 30.0%
!!! TTTTTGTTGTTGTGAAACAC+AGG - chr8_1:503501-503520 Msa1171030:intron 30.0%
TGTGGTATGTAGAAAACTAT+GGG - chr8_1:504132-504151 Msa1171030:intron 30.0%
AGGATTCTCCAATTAAAACT+AGG - chr8_1:504538-504557 Msa1171030:CDS 30.0%
AATACAGTGGATAGAATGTA+AGG - chr8_1:504915-504934 Msa1171030:intron 30.0%
ATACAGTGGATAGAATGTAA+GGG - chr8_1:504916-504935 Msa1171030:intron 30.0%
ATAGGCTAAACAATTTGACT+GGG + chr8_1:505237-505256 None:intergenic 30.0%
AATAGGCTAAACAATTTGAC+TGG + chr8_1:505238-505257 None:intergenic 30.0%
!! CAGCCATAACTTTTAAGAAT+TGG + chr8_1:505268-505287 None:intergenic 30.0%
CAATAGACAAGTTATCATAG+AGG + chr8_1:505359-505378 None:intergenic 30.0%
ATCACATAAAATAACATGGC+TGG + chr8_1:505444-505463 None:intergenic 30.0%
TTGTTAGGTGCATGAAGATT+AGG + chr8_1:502039-502058 None:intergenic 35.0%
AATCTTCATGCACCTAACAA+TGG - chr8_1:502039-502058 Msa1171030:three_prime_UTR 35.0%
AAAGCTGTTGCAGTTCTTAA+GGG - chr8_1:502211-502230 Msa1171030:intron 35.0%
ACTCTTACTCAAGAAAACGA+AGG - chr8_1:502259-502278 Msa1171030:intron 35.0%
TTGAACGGGATTAAGAAGAT+GGG + chr8_1:502288-502307 None:intergenic 35.0%
ATTGAACGGGATTAAGAAGA+TGG + chr8_1:502289-502308 None:intergenic 35.0%
ACGAAAATGGAGAATTGAAC+GGG + chr8_1:502302-502321 None:intergenic 35.0%
TTAAGCTCGTTATCCAAACA+TGG + chr8_1:502476-502495 None:intergenic 35.0%
!! GTTGTTTTCATATGCTATCC+TGG - chr8_1:502587-502606 Msa1171030:intron 35.0%
GCTTATTTCCATAAGCTCTA+TGG + chr8_1:502786-502805 None:intergenic 35.0%
GTTTATTTGAGCTTGTCTAC+CGG + chr8_1:502880-502899 None:intergenic 35.0%
!! AAGAAGAGCATGTTTTGGAT+GGG + chr8_1:502902-502921 None:intergenic 35.0%
!! TAAGAAGAGCATGTTTTGGA+TGG + chr8_1:502903-502922 None:intergenic 35.0%
! ATACGAACATTGACTGTTGT+TGG + chr8_1:503033-503052 None:intergenic 35.0%
!! TTTGTTCCTATGGTTTGGTT+TGG - chr8_1:503272-503291 Msa1171030:intron 35.0%
AACTGGTTAGGATTGAAATG+TGG + chr8_1:503343-503362 None:intergenic 35.0%
AACATAATTGCTGATGCCAA+CGG - chr8_1:503412-503431 Msa1171030:intron 35.0%
ATGTAAACAAGCATTACCGT+TGG + chr8_1:503431-503450 None:intergenic 35.0%
TAAATCAGAATTAGACCCAC+TGG + chr8_1:503630-503649 None:intergenic 35.0%
! ACAGTTAGCTACTTTCAACA+AGG + chr8_1:503678-503697 None:intergenic 35.0%
! AAGTAGCTAACTGTGTTGTT+TGG - chr8_1:503684-503703 Msa1171030:intron 35.0%
! AGATAATGGCTACATATCAC+AGG - chr8_1:503902-503921 Msa1171030:intron 35.0%
! GATAATGGCTACATATCACA+GGG - chr8_1:503903-503922 Msa1171030:intron 35.0%
ATAATGGCTACATATCACAG+GGG - chr8_1:503904-503923 Msa1171030:intron 35.0%
! CATAGTTTTCTACATACCAC+AGG + chr8_1:504133-504152 None:intergenic 35.0%
CTGTGGTATGTAGAAAACTA+TGG - chr8_1:504131-504150 Msa1171030:intron 35.0%
CTTGTTGGAAACCAATATGT+GGG + chr8_1:504245-504264 None:intergenic 35.0%
! ACTTGTTGGAAACCAATATG+TGG + chr8_1:504246-504265 None:intergenic 35.0%
!! CAAAACTGTGTGTTACTTGT+TGG + chr8_1:504260-504279 None:intergenic 35.0%
! ACGACTCTTTGAGAATTGTA+TGG + chr8_1:504303-504322 None:intergenic 35.0%
!! AGCTTGGTCTTGATTTATAG+CGG - chr8_1:504342-504361 Msa1171030:intron 35.0%
GATACTAGAGAAATTGTGAC+TGG - chr8_1:504451-504470 Msa1171030:intron 35.0%
!! ACATTGATTCATATCCAAGC+AGG + chr8_1:504591-504610 None:intergenic 35.0%
CTTGGATATGAATCAATGTC+TGG - chr8_1:504592-504611 Msa1171030:intron 35.0%
! TTACAGTCTTTTCCGAGTAT+AGG - chr8_1:504746-504765 Msa1171030:intron 35.0%
! TACAGTCTTTTCCGAGTATA+GGG - chr8_1:504747-504766 Msa1171030:intron 35.0%
! TTATTATACAGTAAGGGTGC+AGG + chr8_1:504967-504986 None:intergenic 35.0%
CTATTGTGCTTGATTGTTTC+AGG - chr8_1:505373-505392 Msa1171030:CDS 35.0%
AGCGTTTGTAGCATTTATAC+TGG + chr8_1:505415-505434 None:intergenic 35.0%
CATCAAGCTTCACAAAACAA+GGG + chr8_1:505485-505504 None:intergenic 35.0%
!!! CTTGTTTTGTGAAGCTTGAT+GGG - chr8_1:505484-505503 Msa1171030:CDS 35.0%
AACCGATCATGAAAACACAT+TGG - chr8_1:505575-505594 Msa1171030:five_prime_UTR 35.0%
! GACCAATGTGTTTTCATGAT+CGG + chr8_1:505580-505599 None:intergenic 35.0%
ATGATAAATCTCTCTGGTAC+AGG + chr8_1:505602-505621 None:intergenic 35.0%
! AAGTAGGTTATTTCACAAGC+AGG + chr8_1:505679-505698 None:intergenic 35.0%
AAGAACTGCAACAGCTTTCT+TGG + chr8_1:502209-502228 None:intergenic 40.0%
GAAAGCTGTTGCAGTTCTTA+AGG - chr8_1:502210-502229 Msa1171030:intron 40.0%
AGTAACAACACCTTCAACAG+TGG + chr8_1:502242-502261 None:intergenic 40.0%
ATGCTATCCTGGAGAGATTA+TGG - chr8_1:502598-502617 Msa1171030:intron 40.0%
CTCATTTCCATAATCTCTCC+AGG + chr8_1:502608-502627 None:intergenic 40.0%
CTGGAGAGATTATGGAAATG+AGG - chr8_1:502606-502625 Msa1171030:intron 40.0%
AATCACTTGTGAGGCTGTTT+GGG + chr8_1:502854-502873 None:intergenic 40.0%
AAATCACTTGTGAGGCTGTT+TGG + chr8_1:502855-502874 None:intergenic 40.0%
! AGCCTCACAAGTGATTTTTC+CGG - chr8_1:502858-502877 Msa1171030:intron 40.0%
TACCGGAAAAATCACTTGTG+AGG + chr8_1:502863-502882 None:intergenic 40.0%
ACAGTCAATGTTCGTATCAC+TGG - chr8_1:503036-503055 Msa1171030:intron 40.0%
TTTATCTTGCAGCACGAGTA+TGG - chr8_1:503176-503195 Msa1171030:intron 40.0%
AGTATGGTGATACCACCAAT+GGG - chr8_1:503192-503211 Msa1171030:intron 40.0%
CTTCAACCAAACCAAACCAT+AGG + chr8_1:503281-503300 None:intergenic 40.0%
AATCCTAACCAGTTGACACA+CGG - chr8_1:503349-503368 Msa1171030:intron 40.0%
TGAAGATGAAATCCGTCATG+CGG - chr8_1:503378-503397 Msa1171030:intron 40.0%
CATCAGCAATTATGTTTCCC+AGG + chr8_1:503408-503427 None:intergenic 40.0%
! CCATAAAGTTTTCAACGCAG+AGG + chr8_1:503455-503474 None:intergenic 40.0%
CCTCTGCGTTGAAAACTTTA+TGG - chr8_1:503452-503471 Msa1171030:CDS 40.0%
AACTATAGTTCTTCTGCCAG+TGG - chr8_1:503611-503630 Msa1171030:intron 40.0%
ACTATAGTTCTTCTGCCAGT+GGG - chr8_1:503612-503631 Msa1171030:intron 40.0%
TTCAAGCTCATGAACCACTA+AGG + chr8_1:503760-503779 None:intergenic 40.0%
CTTGAAGATGACCTTGGAAA+GGG - chr8_1:503774-503793 Msa1171030:intron 40.0%
! CATGAACTTAGTTTGAGCAC+TGG - chr8_1:504087-504106 Msa1171030:intron 40.0%
ACTAGAGAAATTGTGACTGG+AGG - chr8_1:504454-504473 Msa1171030:intron 40.0%
ATCCAAGCAGGCAACAAAAT+GGG + chr8_1:504579-504598 None:intergenic 40.0%
TATCCAAGCAGGCAACAAAA+TGG + chr8_1:504580-504599 None:intergenic 40.0%
!! AAGTTGGATTGGCAATACAG+TGG - chr8_1:504902-504921 Msa1171030:intron 40.0%
! TTGATTGTTTCAGGTGTGGT+TGG - chr8_1:505382-505401 Msa1171030:CDS 40.0%
CCATCAAGCTTCACAAAACA+AGG + chr8_1:505486-505505 None:intergenic 40.0%
!!! CCTTGTTTTGTGAAGCTTGA+TGG - chr8_1:505483-505502 Msa1171030:CDS 40.0%
! ATCGGTTTACACACTCATCT+AGG + chr8_1:505562-505581 None:intergenic 40.0%
GACTGCATGATAAATCTCTC+TGG + chr8_1:505608-505627 None:intergenic 40.0%
GAGAGATTTATCATGCAGTC+AGG - chr8_1:505608-505627 Msa1171030:five_prime_UTR 40.0%
AGAAGAGAGTGAGAAGTGAG+TGG + chr8_1:502091-502110 None:intergenic 45.0%
CTTCTCCGATCATCTTTCTC+CGG - chr8_1:502106-502125 Msa1171030:three_prime_UTR 45.0%
GAATTGAGGAGAGAGCTTGA+CGG + chr8_1:502137-502156 None:intergenic 45.0%
! CTGGAATTTGGAACGCGAAA+GGG + chr8_1:502164-502183 None:intergenic 45.0%
TTTCTTGGCAGCAGCAACAA+CGG + chr8_1:502194-502213 None:intergenic 45.0%
AAGGGTAACTCCACTGTTGA+AGG - chr8_1:502229-502248 Msa1171030:intron 45.0%
!! GTCTTGATTTGGGCCATGTT+TGG - chr8_1:502460-502479 Msa1171030:intron 45.0%
GAGTATGGTGATACCACCAA+TGG - chr8_1:503191-503210 Msa1171030:intron 45.0%
!! GCATGACGGATTTCATCTTC+AGG + chr8_1:503379-503398 None:intergenic 45.0%
GAAGATGAAATCCGTCATGC+GGG - chr8_1:503379-503398 Msa1171030:intron 45.0%
GGCAACAATCGTTGACAATC+AGG - chr8_1:503533-503552 Msa1171030:intron 45.0%
ATCATGCAGATACCACTCAC+TGG - chr8_1:503711-503730 Msa1171030:intron 45.0%
CTCTCCCAATGACTGAATTG+GGG + chr8_1:503737-503756 None:intergenic 45.0%
GCTCTCCCAATGACTGAATT+GGG + chr8_1:503738-503757 None:intergenic 45.0%
CATGAGCTTGAAGATGACCT+TGG - chr8_1:503768-503787 Msa1171030:intron 45.0%
GCTTGAAGATGACCTTGGAA+AGG - chr8_1:503773-503792 Msa1171030:intron 45.0%
GGATGAACTAACCCTTTCCA+AGG + chr8_1:503788-503807 None:intergenic 45.0%
!! AGTTTGAGCACTGGAAATGC+CGG - chr8_1:504096-504115 Msa1171030:intron 45.0%
! CGCTGCATTTTCCCACATAT+TGG - chr8_1:504231-504250 Msa1171030:intron 45.0%
! TTCCCATTTTGTTGCCTGCT+TGG - chr8_1:504574-504593 Msa1171030:intron 45.0%
! TACAGTAAGGGTGCAGGTTA+GGG + chr8_1:504961-504980 None:intergenic 45.0%
! ATACAGTAAGGGTGCAGGTT+AGG + chr8_1:504962-504981 None:intergenic 45.0%
! GTGCTTGATTGTTTCAGGTG+TGG - chr8_1:505378-505397 Msa1171030:CDS 45.0%
! GAGAGTGTGACGCCATTGTT+AGG + chr8_1:502054-502073 None:intergenic 50.0%
AGACGCCGGAGAAAGATGAT+CGG + chr8_1:502114-502133 None:intergenic 50.0%
CGCGAAAGGGTTGAGAATTG+AGG + chr8_1:502151-502170 None:intergenic 50.0%
! GCTGGAATTTGGAACGCGAA+AGG + chr8_1:502165-502184 None:intergenic 50.0%
AACGGAGAGAGGCTGGAATT+TGG + chr8_1:502176-502195 None:intergenic 50.0%
!! GTATCACTGGCCTTACTCCA+GGG - chr8_1:503049-503068 Msa1171030:intron 50.0%
AACCATGAAGCCCTGGAGTA+AGG + chr8_1:503062-503081 None:intergenic 50.0%
AGGTGAAAACCATGAAGCCC+TGG + chr8_1:503069-503088 None:intergenic 50.0%
! AGGGCTTCATGGTTTTCACC+TGG - chr8_1:503068-503087 Msa1171030:intron 50.0%
! GGCATGAAGTATCACTCACC+AGG + chr8_1:503089-503108 None:intergenic 50.0%
TGTCGAGATACACCCATTGG+TGG + chr8_1:503207-503226 None:intergenic 50.0%
ACCAATGGGTGTATCTCGAC+AGG - chr8_1:503206-503225 Msa1171030:intron 50.0%
ACCTGTCGAGATACACCCAT+TGG + chr8_1:503210-503229 None:intergenic 50.0%
ACTGGCCCCAATTCAGTCAT+TGG - chr8_1:503729-503748 Msa1171030:intron 50.0%
CTGGCCCCAATTCAGTCATT+GGG - chr8_1:503730-503749 Msa1171030:intron 50.0%
GGCTCTCCCAATGACTGAAT+TGG + chr8_1:503739-503758 None:intergenic 50.0%
AGTCATTGGGAGAGCCTTAG+TGG - chr8_1:503743-503762 Msa1171030:intron 50.0%
ATGGCTACATATCACAGGGG+AGG - chr8_1:503907-503926 Msa1171030:intron 50.0%
GCATCTGCTCGTACTTATGC+AGG - chr8_1:504060-504079 Msa1171030:intron 50.0%
TCTGCTCGTACTTATGCAGG+TGG - chr8_1:504063-504082 Msa1171030:intron 50.0%
ACCACAGGCTAATCTTCCAC+CGG + chr8_1:504118-504137 None:intergenic 50.0%
ATTAGTGACATAGGCGACGC+AGG + chr8_1:505034-505053 None:intergenic 50.0%
CAGAGTGCACATCCTACACA+GGG + chr8_1:505211-505230 None:intergenic 50.0%
GAGTGAGAAGTGAGTGGCGA+AGG + chr8_1:502085-502104 None:intergenic 55.0%
!! CGTATCACTGGCCTTACTCC+AGG - chr8_1:503048-503067 Msa1171030:intron 55.0%
GCACCGTGTGTCAACTGGTT+AGG + chr8_1:503355-503374 None:intergenic 55.0%
! GTGAAACACAGGCGTTGCAG+AGG - chr8_1:503512-503531 Msa1171030:intron 55.0%
ACTGAATTGGGGCCAGTGAG+TGG + chr8_1:503726-503745 None:intergenic 55.0%
!! TTGAGCACTGGAAATGCCGG+TGG - chr8_1:504099-504118 Msa1171030:intron 55.0%
GGGTTAAACCTGCCCTGTGT+AGG - chr8_1:505196-505215 Msa1171030:intron 55.0%
GCAGAGTGCACATCCTACAC+AGG + chr8_1:505212-505231 None:intergenic 55.0%
AGAGAGCTTGACGGAGACGC+CGG + chr8_1:502128-502147 None:intergenic 60.0%
CAGCAACAACGGAGAGAGGC+TGG + chr8_1:502183-502202 None:intergenic 60.0%
GCAGCAGCAACAACGGAGAG+AGG + chr8_1:502187-502206 None:intergenic 60.0%
GGCCTTACTCCAGGGCTTCA+TGG - chr8_1:503057-503076 Msa1171030:intron 60.0%
!! CAGGAGCACCGTGTGTCAAC+TGG + chr8_1:503360-503379 None:intergenic 60.0%
AATCCGTCATGCGGGTGACC+TGG - chr8_1:503387-503406 Msa1171030:intron 60.0%
ATCCGTCATGCGGGTGACCT+GGG - chr8_1:503388-503407 Msa1171030:intron 60.0%
TTCCCAGGTCACCCGCATGA+CGG + chr8_1:503393-503412 None:intergenic 60.0%
!! GCCGGTGGAAGATTAGCCTG+TGG - chr8_1:504114-504133 Msa1171030:intron 60.0%
TGACATAGGCGACGCAGGCA+TGG + chr8_1:505029-505048 None:intergenic 60.0%
GTGCACATCCTACACAGGGC+AGG + chr8_1:505207-505226 None:intergenic 60.0%
GGCATGGCGCAGAGCAGGTT+AGG + chr8_1:505013-505032 None:intergenic 65.0%
ACGCAGGCATGGCGCAGAGC+AGG + chr8_1:505018-505037 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 501864 505721 501864 ID=Msa1171030;Name=Msa1171030
chr8_1 mRNA 501864 505721 501864 ID=Msa1171030-mRNA-1;Parent=Msa1171030;Name=Msa1171030-mRNA-1;_AED=0.13;_eAED=0.13;_QI=182|1|1|1|1|1|8|301|206
chr8_1 exon 501864 502190 501864 ID=Msa1171030-mRNA-1:exon:167;Parent=Msa1171030-mRNA-1
chr8_1 exon 503450 503503 503450 ID=Msa1171030-mRNA-1:exon:166;Parent=Msa1171030-mRNA-1
chr8_1 exon 503790 503865 503790 ID=Msa1171030-mRNA-1:exon:165;Parent=Msa1171030-mRNA-1
chr8_1 exon 504031 504062 504031 ID=Msa1171030-mRNA-1:exon:164;Parent=Msa1171030-mRNA-1
chr8_1 exon 504152 504247 504152 ID=Msa1171030-mRNA-1:exon:163;Parent=Msa1171030-mRNA-1
chr8_1 exon 504358 504397 504358 ID=Msa1171030-mRNA-1:exon:162;Parent=Msa1171030-mRNA-1
chr8_1 exon 504496 504557 504496 ID=Msa1171030-mRNA-1:exon:161;Parent=Msa1171030-mRNA-1
chr8_1 exon 505305 505721 505305 ID=Msa1171030-mRNA-1:exon:160;Parent=Msa1171030-mRNA-1
chr8_1 five_prime_UTR 505540 505721 505540 ID=Msa1171030-mRNA-1:five_prime_utr;Parent=Msa1171030-mRNA-1
chr8_1 CDS 505305 505539 505305 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 CDS 504496 504557 504496 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 CDS 504358 504397 504358 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 CDS 504152 504247 504152 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 CDS 504031 504062 504031 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 CDS 503790 503865 503790 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 CDS 503450 503503 503450 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 CDS 502165 502190 502165 ID=Msa1171030-mRNA-1:cds;Parent=Msa1171030-mRNA-1
chr8_1 three_prime_UTR 501864 502164 501864 ID=Msa1171030-mRNA-1:three_prime_utr;Parent=Msa1171030-mRNA-1
Gene Sequence

>Msa1171030

ATGCACCTAACAATGGCGTCACACTCTCTCATGTCACCTTCGCCACTCACTTCTCACTCTCTTCTCCGATCATCTTTCTCCGGCGTCTCCGTCAAGCTCTCTCCTCAATTCTCAACCCTTTCGCGTTCCAAATTCCAGCCTCTCTCCGTTGTTGCTGCTGCCAAGAAAGCTGTTGCAGTTCTTAAGGGTAACTCCACTGTTGAAGGTGTTGTTACTCTTACTCAAGAAAACGAAGGTCCAACAACAGTCAATGTTCGTATCACTGGCCTTACTCCAGGGCTTCATGGTTTTCACCTGCACGAGTATGGTGATACCACCAATGGGTGTATCTCGACAGGACCACATTTCAATCCTAACCAGTTGACACACGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAATTGCTGATGCCAACGGCGTTGCAGAGGCAACAATCGTTGACAATCAGATACCACTCACTGGCCCCAATTCAGTCATTGGGAGAGCCTTAGTGGTTCATGAGCTTGAAGATGACCTTGGAAAGGGTGGACATGAACTTAGTTTGAGCACTGGAAATGCCGGTGGAAGATTAGCCTGTGGTGTGGTTGGCTTGACTCCAGTATAA

Protein sequence

>Msa1171030

MHLTMASHSLMSPSPLTSHSLLRSSFSGVSVKLSPQFSTLSRSKFQPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV*