AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0681910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681910 MtrunA17_Chr4g0028001 98.544 206 3 0 1 206 1 206 2.40e-147 407
Msa0681910 MtrunA17_Chr7g0273571 68.919 148 46 0 56 203 3 150 4.81e-71 213
Msa0681910 MtrunA17_Chr6g0461291 60.403 149 58 1 56 203 9 157 9.95e-58 179
Msa0681910 MtrunA17_Chr4g0056641 35.537 121 67 4 57 176 157 267 1.96e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681910 AT2G28190.1 72.986 211 48 2 3 206 8 216 1.72e-102 295
Msa0681910 AT1G08830.2 66.892 148 49 0 56 203 3 150 3.32e-67 203
Msa0681910 AT1G08830.1 66.892 148 49 0 56 203 3 150 3.32e-67 203
Msa0681910 AT5G18100.1 60.135 148 59 0 56 203 9 156 4.81e-61 188
Msa0681910 AT5G18100.2 58.730 126 52 0 56 181 9 134 1.55e-48 155
Msa0681910 AT1G12520.3 37.190 121 67 3 57 177 28 139 1.77e-14 68.9
Msa0681910 AT1G12520.1 37.190 121 67 3 57 177 164 275 4.82e-14 69.7
Msa0681910 AT1G12520.2 37.190 121 67 3 57 177 73 184 5.42e-14 68.6

Find 81 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTGCAACAGCTTTCT+TGG 0.257195 4_4:+42805094 None:intergenic
GGCCTTACTCCAGGGCTTCA+TGG 0.278416 4_4:-42804238 Msa0681910:CDS
AACGGAGAGAGGCTGGAATT+TGG 0.292602 4_4:+42805127 None:intergenic
GGCTCTCCCAATGACTGAAT+TGG 0.294518 4_4:+42803559 None:intergenic
GAAAGCTGTTGCAGTTCTTA+AGG 0.327591 4_4:-42805090 Msa0681910:CDS
GCTCTCCCAATGACTGAATT+GGG 0.359785 4_4:+42803560 None:intergenic
GCATGACGGATTTCATCTTC+AGG 0.389426 4_4:+42803919 None:intergenic
TTTATCTTGCAGCACGAGTA+TGG 0.392047 4_4:-42804119 Msa0681910:intron
AAAGCTGTTGCAGTTCTTAA+GGG 0.393106 4_4:-42805089 Msa0681910:CDS
AGCGTTTGTAGCATTTATAC+TGG 0.397586 4_4:+42801882 None:intergenic
GGCAACAATCGTTGACAATC+AGG 0.399165 4_4:-42803762 Msa0681910:intron
CGTATCACTGGCCTTACTCC+AGG 0.406214 4_4:-42804247 Msa0681910:CDS
TTGTTAGGTGCATGAAGATT+AGG 0.415191 4_4:+42805264 None:intergenic
GAGTGAGAAGTGAGTGGCGA+AGG 0.415982 4_4:+42805218 None:intergenic
TATGTGATATTTGATTTCTT+CGG 0.417094 4_4:-42801838 Msa0681910:three_prime_UTR
ACTGGCCCCAATTCAGTCAT+TGG 0.417542 4_4:-42803566 Msa0681910:CDS
CAGGAGCACCGTGTGTCAAC+TGG 0.432832 4_4:+42803938 None:intergenic
AATCCGTCATGCGGGTGACC+TGG 0.434387 4_4:-42803908 Msa0681910:CDS
AACCATGAAGCCCTGGAGTA+AGG 0.443025 4_4:+42804236 None:intergenic
CAGCAACAACGGAGAGAGGC+TGG 0.455953 4_4:+42805120 None:intergenic
GCACCGTGTGTCAACTGGTT+AGG 0.459986 4_4:+42803943 None:intergenic
AGTCATTGGGAGAGCCTTAG+TGG 0.466496 4_4:-42803552 Msa0681910:CDS
AAGGGTAACTCCACTGTTGA+AGG 0.471786 4_4:-42805071 Msa0681910:CDS
CTGGCCCCAATTCAGTCATT+GGG 0.477587 4_4:-42803565 Msa0681910:CDS
CCATCAAGCTTCACAAAACA+AGG 0.483848 4_4:+42801811 None:intergenic
TTGATTGTTTCAGGTGTGGT+TGG 0.496252 4_4:-42801912 Msa0681910:intron
CTTGAAGATGACCTTGGAAA+GGG 0.496504 4_4:-42803521 Msa0681910:intron
CATCAGCAATTATGTTTCCC+AGG 0.498669 4_4:+42803890 None:intergenic
ACAGTCAATGTTCGTATCAC+TGG 0.500510 4_4:-42804259 Msa0681910:CDS
ATCACATAAAATAACATGGC+TGG 0.507386 4_4:+42801853 None:intergenic
ATACGAACATTGACTGTTGT+TGG 0.508293 4_4:+42804265 None:intergenic
ATGATAAATCTCTCTGGTAC+AGG 0.510009 4_4:+42801695 None:intergenic
ATCGGTTTACACACTCATCT+AGG 0.511219 4_4:+42801735 None:intergenic
CTGGAATTTGGAACGCGAAA+GGG 0.512711 4_4:+42805139 None:intergenic
CTTCTCCGATCATCTTTCTC+CGG 0.517355 4_4:-42805194 Msa0681910:CDS
GAGAGTGTGACGCCATTGTT+AGG 0.519424 4_4:+42805249 None:intergenic
GACTGCATGATAAATCTCTC+TGG 0.520913 4_4:+42801689 None:intergenic
AAGTAGGTTCTTTCACAAGC+AGG 0.522481 4_4:+42801618 None:intergenic
GAGAGATTTATCATGCAGTC+AGG 0.526100 4_4:-42801686 Msa0681910:three_prime_UTR
ATCCGTCATGCGGGTGACCT+GGG 0.530041 4_4:-42803907 Msa0681910:CDS
CGCGAAAGGGTTGAGAATTG+AGG 0.534704 4_4:+42805152 None:intergenic
AGTTTGAGCACTGGAAATGC+CGG 0.542289 4_4:-42803199 Msa0681910:CDS
CATGAACTTAGTTTGAGCAC+TGG 0.549851 4_4:-42803208 Msa0681910:CDS
GTATCACTGGCCTTACTCCA+GGG 0.550072 4_4:-42804246 Msa0681910:CDS
AGGTGAAAACCATGAAGCCC+TGG 0.553380 4_4:+42804229 None:intergenic
ACCAATGGGTGTATCTCGAC+AGG 0.554865 4_4:-42804089 Msa0681910:intron
TTCAAGCTCATGAACCACTA+AGG 0.558296 4_4:+42803538 None:intergenic
CATGAGCTTGAAGATGACCT+TGG 0.559793 4_4:-42803527 Msa0681910:CDS
ATCAATGTAAATTATCAAGT+AGG 0.562867 4_4:+42801602 None:intergenic
GAAGATGAAATCCGTCATGC+GGG 0.564092 4_4:-42803916 Msa0681910:CDS
GCTGGAATTTGGAACGCGAA+AGG 0.574919 4_4:+42805138 None:intergenic
ACCTGTCGAGATACACCCAT+TGG 0.575585 4_4:+42804088 None:intergenic
AGAGAGCTTGACGGAGACGC+CGG 0.577978 4_4:+42805175 None:intergenic
AGTAACAACACCTTCAACAG+TGG 0.579962 4_4:+42805061 None:intergenic
GCTTGAAGATGACCTTGGAA+AGG 0.581249 4_4:-42803522 Msa0681910:CDS
GAATTGAGGAGAGAGCTTGA+CGG 0.581862 4_4:+42805166 None:intergenic
AACATAATTGCTGATGCCAA+CGG 0.589398 4_4:-42803883 Msa0681910:intron
GGATGAACTAACCCTTTCCA+AGG 0.593520 4_4:+42803510 None:intergenic
GAGTATGGTGATACCACCAA+TGG 0.595372 4_4:-42804104 Msa0681910:CDS
AGTATGGTGATACCACCAAT+GGG 0.608769 4_4:-42804103 Msa0681910:CDS
GTGAAACACAGGCGTTGCAG+AGG 0.609173 4_4:-42803783 Msa0681910:intron
TTTCTTGGCAGCAGCAACAA+CGG 0.616837 4_4:+42805109 None:intergenic
GCAGCAGCAACAACGGAGAG+AGG 0.618791 4_4:+42805116 None:intergenic
TGTCGAGATACACCCATTGG+TGG 0.618804 4_4:+42804091 None:intergenic
CTCTCCCAATGACTGAATTG+GGG 0.619637 4_4:+42803561 None:intergenic
ACCACAGGCTAATCTTCCAC+CGG 0.621370 4_4:+42803180 None:intergenic
AATCTTCATGCACCTAACAA+TGG 0.624185 4_4:-42805261 Msa0681910:exon
AATCCTAACCAGTTGACACA+CGG 0.627360 4_4:-42803946 Msa0681910:CDS
TTCCCAGGTCACCCGCATGA+CGG 0.629118 4_4:+42803905 None:intergenic
TGAAGATGAAATCCGTCATG+CGG 0.631482 4_4:-42803917 Msa0681910:CDS
ATCATGCAGATACCACTCAC+TGG 0.633823 4_4:-42803584 Msa0681910:intron
AAATATCACATAAAATAACA+TGG 0.636187 4_4:+42801849 None:intergenic
AGACGCCGGAGAAAGATGAT+CGG 0.638557 4_4:+42805189 None:intergenic
TTGAGCACTGGAAATGCCGG+TGG 0.645778 4_4:-42803196 Msa0681910:CDS
AACCGATCATGAAAACACAT+TGG 0.645904 4_4:-42801719 Msa0681910:three_prime_UTR
AGAAGAGAGTGAGAAGTGAG+TGG 0.648773 4_4:+42805212 None:intergenic
ACTGAATTGGGGCCAGTGAG+TGG 0.664251 4_4:+42803572 None:intergenic
GCCGGTGGAAGATTAGCCTG+TGG 0.696428 4_4:-42803181 Msa0681910:intron
ACTCTTACTCAAGAAAACGA+AGG 0.698943 4_4:-42805041 Msa0681910:intron
CATCAAGCTTCACAAAACAA+GGG 0.714526 4_4:+42801812 None:intergenic
AACTGGTTAGGATTGAAATG+TGG 0.750548 4_4:+42803955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATAAATATATAAAA+TGG + chr4_4:42803555-42803574 None:intergenic 0.0%
!!! TTTTTTGTTTTCCAAATTTT+TGG + chr4_4:42801630-42801649 None:intergenic 15.0%
!!! ACTGTTTTAATATAATCTAT+AGG - chr4_4:42802306-42802325 Msa0681910:intron 15.0%
!!! AACTAAATAAACAATTTTGA+AGG + chr4_4:42802862-42802881 None:intergenic 15.0%
!!! TTATTTTCCTCTAAAAAATA+TGG - chr4_4:42802896-42802915 Msa0681910:intron 15.0%
!!! AAATATAAAGGTACAAAAAA+TGG + chr4_4:42803000-42803019 None:intergenic 15.0%
!! CAATAACATAATATTAATCT+AGG - chr4_4:42804264-42804283 Msa0681910:CDS 15.0%
!! TCGATATCTTTAAATTAAAA+GGG - chr4_4:42804394-42804413 Msa0681910:intron 15.0%
!! AAATATCACATAAAATAACA+TGG + chr4_4:42805195-42805214 None:intergenic 15.0%
!!! TCAGAAATCAAATTTTATTA+GGG + chr4_4:42805389-42805408 None:intergenic 15.0%
!!! ATCAGAAATCAAATTTTATT+AGG + chr4_4:42805390-42805409 None:intergenic 15.0%
!! ATCAATTATCGATAATAGTT+TGG - chr4_4:42802064-42802083 Msa0681910:intron 20.0%
!! GATTATGAGTAATTGAAATT+TGG - chr4_4:42802108-42802127 Msa0681910:intron 20.0%
!! AATGCATTATGAATCTTTAT+AGG - chr4_4:42802143-42802162 Msa0681910:intron 20.0%
!!! TTATGAATCTTTATAGGTTT+TGG - chr4_4:42802149-42802168 Msa0681910:intron 20.0%
!!! TATGAATCTTTATAGGTTTT+GGG - chr4_4:42802150-42802169 Msa0681910:intron 20.0%
!! ATCCAATAATCTTATGAAAA+CGG + chr4_4:42802401-42802420 None:intergenic 20.0%
!!! TAAAACACCATATTTTTTAG+AGG + chr4_4:42802906-42802925 None:intergenic 20.0%
!! CCATTATCTATTGTTTATTT+GGG + chr4_4:42803637-42803656 None:intergenic 20.0%
!! AATAATTGAAGATCATGAAA+AGG + chr4_4:42803919-42803938 None:intergenic 20.0%
!! AACATATAAGCATTTAAGTA+TGG + chr4_4:42803942-42803961 None:intergenic 20.0%
!!! ATATATGCTTTTTAGAATTG+TGG - chr4_4:42804241-42804260 Msa0681910:CDS 20.0%
!! CTCGATATCTTTAAATTAAA+AGG - chr4_4:42804393-42804412 Msa0681910:intron 20.0%
!!! ACATAATATTTGGTGTTAAA+AGG - chr4_4:42804573-42804592 Msa0681910:intron 20.0%
!!! TTATCATCTCATTTTAAAGT+TGG - chr4_4:42804633-42804652 Msa0681910:intron 20.0%
!! AGGTTATTATTATACAGTAA+GGG + chr4_4:42804720-42804739 None:intergenic 20.0%
!!! TATGTGATATTTGATTTCTT+CGG - chr4_4:42805203-42805222 Msa0681910:CDS 20.0%
!! ATCAATGTAAATTATCAAGT+AGG + chr4_4:42805442-42805461 None:intergenic 20.0%
!!! TCGATAATTGATAACGAAAA+TGG + chr4_4:42802056-42802075 None:intergenic 25.0%
!!! CGATAATAGTTTGGTTTTTT+TGG - chr4_4:42802073-42802092 Msa0681910:intron 25.0%
! ATATGAACTTGTCTTGATTT+GGG - chr4_4:42802191-42802210 Msa0681910:intron 25.0%
!!! TAATTAAGAAGAGCATGTTT+TGG + chr4_4:42802648-42802667 None:intergenic 25.0%
!!! TGTAGCTATTTGTTTTTTTG+TGG - chr4_4:42802743-42802762 Msa0681910:intron 25.0%
!!! ATAAACAATTTTGAAGGAAG+AGG + chr4_4:42802856-42802875 None:intergenic 25.0%
! AAAAAATGGAAACTAAGGTT+AGG + chr4_4:42802986-42803005 None:intergenic 25.0%
!! ACCTTTATATTTTGTTCCTA+TGG - chr4_4:42803008-42803027 Msa0681910:intron 25.0%
! ACCATAGGAACAAAATATAA+AGG + chr4_4:42803012-42803031 None:intergenic 25.0%
!! TATATTTTGTTCCTATGGTT+TGG - chr4_4:42803013-42803032 Msa0681910:intron 25.0%
! ATTGTTTATTTGGGTAATAC+AGG + chr4_4:42803628-42803647 None:intergenic 25.0%
! CCCAAATAAACAATAGATAA+TGG - chr4_4:42803634-42803653 Msa0681910:intron 25.0%
! GCCATTATCTATTGTTTATT+TGG + chr4_4:42803638-42803657 None:intergenic 25.0%
! GAATGACATGAATATGAAAT+TGG - chr4_4:42803675-42803694 Msa0681910:intron 25.0%
!!! TAACTGCAGTATTTTTACTT+TGG - chr4_4:42803775-42803794 Msa0681910:CDS 25.0%
! TTTAAGTCTTTGAATAAGCT+TGG - chr4_4:42804072-42804091 Msa0681910:intron 25.0%
! TAACATTTAGCAACATATAC+AGG + chr4_4:42804164-42804183 None:intergenic 25.0%
! TGTATATGTTGCTAAATGTT+AGG - chr4_4:42804163-42804182 Msa0681910:intron 25.0%
!!! AGATACTTCCTAGTTTTAAT+TGG + chr4_4:42804295-42804314 None:intergenic 25.0%
! ATAAATGTAATCCCTATACT+CGG + chr4_4:42804508-42804527 None:intergenic 25.0%
! ATGTCTCGAAACATAATATT+TGG - chr4_4:42804563-42804582 Msa0681910:intron 25.0%
!!! ATCTCATTTTAAAGTTGGAT+TGG - chr4_4:42804638-42804657 Msa0681910:intron 25.0%
! CAGGTTATTATTATACAGTA+AGG + chr4_4:42804721-42804740 None:intergenic 25.0%
!!! AGGATATTGTTTTTAAAAGC+AGG + chr4_4:42804740-42804759 None:intergenic 25.0%
! CAAGTATTAATTAGTGACAT+AGG + chr4_4:42804790-42804809 None:intergenic 25.0%
! TGAGCATGTTAATTTAGATA+AGG - chr4_4:42804921-42804940 Msa0681910:intron 25.0%
! GAGCATGTTAATTTAGATAA+GGG - chr4_4:42804922-42804941 Msa0681910:intron 25.0%
! AGCATGTTAATTTAGATAAG+GGG - chr4_4:42804923-42804942 Msa0681910:intron 25.0%
! TAAGAATTGGACTATTGAAT+AGG + chr4_4:42805002-42805021 None:intergenic 25.0%
! AGTCCAATTCTTAAAAGTTA+TGG - chr4_4:42805009-42805028 Msa0681910:intron 25.0%
!! ATCAAATTTTATTAGGGAGA+AGG + chr4_4:42805383-42805402 None:intergenic 25.0%
!! CATGTTCTTAGATTTTTGGA+TGG + chr4_4:42801607-42801626 None:intergenic 30.0%
! TTGGCATGTTCTTAGATTTT+TGG + chr4_4:42801611-42801630 None:intergenic 30.0%
CTAAGAACATGCCAAAAATT+TGG - chr4_4:42801616-42801635 Msa0681910:three_prime_UTR 30.0%
AACGAAAATGGAGAATTGAA+CGG + chr4_4:42802044-42802063 None:intergenic 30.0%
!!! GTTTTTTTGGTTAGTGAGAA+TGG - chr4_4:42802086-42802105 Msa0681910:intron 30.0%
CATATGAACTTGTCTTGATT+TGG - chr4_4:42802190-42802209 Msa0681910:intron 30.0%
!! AGCCGTTTTCATAAGATTAT+TGG - chr4_4:42802396-42802415 Msa0681910:intron 30.0%
AAGTTATTCCATAGAGCTTA+TGG - chr4_4:42802516-42802535 Msa0681910:intron 30.0%
TCTTAAGTATACTGTATACG+TGG - chr4_4:42802678-42802697 Msa0681910:intron 30.0%
!!! TTGTTTTTTTGTGGATGAGT+AGG - chr4_4:42802752-42802771 Msa0681910:intron 30.0%
GGTACAAAAAATGGAAACTA+AGG + chr4_4:42802991-42803010 None:intergenic 30.0%
! GCTTCTTGAATCTCTTATTT+AGG - chr4_4:42803062-42803081 Msa0681910:intron 30.0%
!!! TTTTTGTTGTTGTGAAACAC+AGG - chr4_4:42803247-42803266 Msa0681910:intron 30.0%
TGTGGTATGTAGAAAACTAT+GGG - chr4_4:42803878-42803897 Msa0681910:intron 30.0%
AGGATTCTCCAATTAAAACT+AGG - chr4_4:42804284-42804303 Msa0681910:intron 30.0%
AATACAGTGGATAGAATGTA+AGG - chr4_4:42804662-42804681 Msa0681910:intron 30.0%
ATACAGTGGATAGAATGTAA+GGG - chr4_4:42804663-42804682 Msa0681910:intron 30.0%
ATAGGCTAAACAATTTGACT+GGG + chr4_4:42804984-42805003 None:intergenic 30.0%
AATAGGCTAAACAATTTGAC+TGG + chr4_4:42804985-42805004 None:intergenic 30.0%
!! CAGCCATAACTTTTAAGAAT+TGG + chr4_4:42805015-42805034 None:intergenic 30.0%
CAATAGACAAGTTATCATAG+AGG + chr4_4:42805106-42805125 None:intergenic 30.0%
ATCACATAAAATAACATGGC+TGG + chr4_4:42805191-42805210 None:intergenic 30.0%
TTGTTAGGTGCATGAAGATT+AGG + chr4_4:42801780-42801799 None:intergenic 35.0%
AATCTTCATGCACCTAACAA+TGG - chr4_4:42801780-42801799 Msa0681910:three_prime_UTR 35.0%
AAAGCTGTTGCAGTTCTTAA+GGG - chr4_4:42801952-42801971 Msa0681910:intron 35.0%
ACTCTTACTCAAGAAAACGA+AGG - chr4_4:42802000-42802019 Msa0681910:intron 35.0%
TTGAACGGGATTAAGAAGAT+GGG + chr4_4:42802029-42802048 None:intergenic 35.0%
ATTGAACGGGATTAAGAAGA+TGG + chr4_4:42802030-42802049 None:intergenic 35.0%
ACGAAAATGGAGAATTGAAC+GGG + chr4_4:42802043-42802062 None:intergenic 35.0%
TTAAGCTCGTTATCCAAACA+TGG + chr4_4:42802217-42802236 None:intergenic 35.0%
!! GTTGTTTTCATATGCTATCC+TGG - chr4_4:42802328-42802347 Msa0681910:intron 35.0%
GCTTATTTCCATAAGCTCTA+TGG + chr4_4:42802527-42802546 None:intergenic 35.0%
GTTTATTTGAGCTTGTCTAC+CGG + chr4_4:42802621-42802640 None:intergenic 35.0%
!! AAGAAGAGCATGTTTTGGAT+TGG + chr4_4:42802643-42802662 None:intergenic 35.0%
! ATACGAACATTGACTGTTGT+TGG + chr4_4:42802779-42802798 None:intergenic 35.0%
!! TTTGTTCCTATGGTTTGGTT+TGG - chr4_4:42803018-42803037 Msa0681910:intron 35.0%
AACTGGTTAGGATTGAAATG+TGG + chr4_4:42803089-42803108 None:intergenic 35.0%
AACATAATTGCTGATGCCAA+CGG - chr4_4:42803158-42803177 Msa0681910:intron 35.0%
ATGTAAACAAGCATTACCGT+TGG + chr4_4:42803177-42803196 None:intergenic 35.0%
TAAATCAGAATTAGACCCAC+TGG + chr4_4:42803376-42803395 None:intergenic 35.0%
! ACAGTTAGCTACTTTCAACA+AGG + chr4_4:42803424-42803443 None:intergenic 35.0%
! AAGTAGCTAACTGTGTTGTT+TGG - chr4_4:42803430-42803449 Msa0681910:intron 35.0%
! AGATAATGGCTACATATCAC+AGG - chr4_4:42803648-42803667 Msa0681910:intron 35.0%
! GATAATGGCTACATATCACA+GGG - chr4_4:42803649-42803668 Msa0681910:intron 35.0%
ATAATGGCTACATATCACAG+GGG - chr4_4:42803650-42803669 Msa0681910:intron 35.0%
! CATAGTTTTCTACATACCAC+AGG + chr4_4:42803879-42803898 None:intergenic 35.0%
CTGTGGTATGTAGAAAACTA+TGG - chr4_4:42803877-42803896 Msa0681910:intron 35.0%
CTTGTTGGAAACCAATATGT+GGG + chr4_4:42803991-42804010 None:intergenic 35.0%
! ACTTGTTGGAAACCAATATG+TGG + chr4_4:42803992-42804011 None:intergenic 35.0%
!! CAAAACTGTGTGTTACTTGT+TGG + chr4_4:42804006-42804025 None:intergenic 35.0%
! ACGACTCTTTGAGAATTGTA+TGG + chr4_4:42804049-42804068 None:intergenic 35.0%
!! AGCTTGGTCTTGATTTATAG+CGG - chr4_4:42804088-42804107 Msa0681910:intron 35.0%
GATACTAGAGAAATTGTGAC+TGG - chr4_4:42804197-42804216 Msa0681910:intron 35.0%
!! ACATTGATTCATATCCAAGC+AGG + chr4_4:42804337-42804356 None:intergenic 35.0%
CTTGGATATGAATCAATGTC+TGG - chr4_4:42804338-42804357 Msa0681910:intron 35.0%
! TTACAGTCTTTTCCGAGTAT+AGG - chr4_4:42804493-42804512 Msa0681910:intron 35.0%
! TACAGTCTTTTCCGAGTATA+GGG - chr4_4:42804494-42804513 Msa0681910:intron 35.0%
! TTATTATACAGTAAGGGTGC+AGG + chr4_4:42804714-42804733 None:intergenic 35.0%
CTATTGTGCTTGATTGTTTC+AGG - chr4_4:42805120-42805139 Msa0681910:CDS 35.0%
AGCGTTTGTAGCATTTATAC+TGG + chr4_4:42805162-42805181 None:intergenic 35.0%
CATCAAGCTTCACAAAACAA+GGG + chr4_4:42805232-42805251 None:intergenic 35.0%
!!! CTTGTTTTGTGAAGCTTGAT+GGG - chr4_4:42805231-42805250 Msa0681910:CDS 35.0%
AACCGATCATGAAAACACAT+TGG - chr4_4:42805322-42805341 Msa0681910:five_prime_UTR 35.0%
! GACCAATGTGTTTTCATGAT+CGG + chr4_4:42805327-42805346 None:intergenic 35.0%
ATGATAAATCTCTCTGGTAC+AGG + chr4_4:42805349-42805368 None:intergenic 35.0%
AAGAACTGCAACAGCTTTCT+TGG + chr4_4:42801950-42801969 None:intergenic 40.0%
GAAAGCTGTTGCAGTTCTTA+AGG - chr4_4:42801951-42801970 Msa0681910:intron 40.0%
AGTAACAACACCTTCAACAG+TGG + chr4_4:42801983-42802002 None:intergenic 40.0%
ATGCTATCCTGGAGAGATTA+TGG - chr4_4:42802339-42802358 Msa0681910:intron 40.0%
CTCATTTCCATAATCTCTCC+AGG + chr4_4:42802349-42802368 None:intergenic 40.0%
CTGGAGAGATTATGGAAATG+AGG - chr4_4:42802347-42802366 Msa0681910:intron 40.0%
AATCACTTGTGAGGCTGTTT+GGG + chr4_4:42802595-42802614 None:intergenic 40.0%
AAATCACTTGTGAGGCTGTT+TGG + chr4_4:42802596-42802615 None:intergenic 40.0%
! AGCCTCACAAGTGATTTTTC+CGG - chr4_4:42802599-42802618 Msa0681910:intron 40.0%
TACCGGAAAAATCACTTGTG+AGG + chr4_4:42802604-42802623 None:intergenic 40.0%
ACAGTCAATGTTCGTATCAC+TGG - chr4_4:42802782-42802801 Msa0681910:intron 40.0%
TTTATCTTGCAGCACGAGTA+TGG - chr4_4:42802922-42802941 Msa0681910:intron 40.0%
AGTATGGTGATACCACCAAT+GGG - chr4_4:42802938-42802957 Msa0681910:intron 40.0%
AATCCTAACCAGTTGACACA+CGG - chr4_4:42803095-42803114 Msa0681910:intron 40.0%
TGAAGATGAAATCCGTCATG+CGG - chr4_4:42803124-42803143 Msa0681910:intron 40.0%
CATCAGCAATTATGTTTCCC+AGG + chr4_4:42803154-42803173 None:intergenic 40.0%
! CCATAAAGTTTTCAACGCAG+AGG + chr4_4:42803201-42803220 None:intergenic 40.0%
CCTCTGCGTTGAAAACTTTA+TGG - chr4_4:42803198-42803217 Msa0681910:CDS 40.0%
AACTATAGTTCTTCTGCCAG+TGG - chr4_4:42803357-42803376 Msa0681910:intron 40.0%
ACTATAGTTCTTCTGCCAGT+GGG - chr4_4:42803358-42803377 Msa0681910:intron 40.0%
TTCAAGCTCATGAACCACTA+AGG + chr4_4:42803506-42803525 None:intergenic 40.0%
CTTGAAGATGACCTTGGAAA+GGG - chr4_4:42803520-42803539 Msa0681910:intron 40.0%
! CATGAACTTAGTTTGAGCAC+TGG - chr4_4:42803833-42803852 Msa0681910:intron 40.0%
ACTAGAGAAATTGTGACTGG+AGG - chr4_4:42804200-42804219 Msa0681910:intron 40.0%
ATCCAAGCAGGCAACAAAAT+GGG + chr4_4:42804325-42804344 None:intergenic 40.0%
TATCCAAGCAGGCAACAAAA+TGG + chr4_4:42804326-42804345 None:intergenic 40.0%
!! AAGTTGGATTGGCAATACAG+TGG - chr4_4:42804649-42804668 Msa0681910:intron 40.0%
! TTGATTGTTTCAGGTGTGGT+TGG - chr4_4:42805129-42805148 Msa0681910:CDS 40.0%
CCATCAAGCTTCACAAAACA+AGG + chr4_4:42805233-42805252 None:intergenic 40.0%
!!! CCTTGTTTTGTGAAGCTTGA+TGG - chr4_4:42805230-42805249 Msa0681910:CDS 40.0%
! ATCGGTTTACACACTCATCT+AGG + chr4_4:42805309-42805328 None:intergenic 40.0%
GACTGCATGATAAATCTCTC+TGG + chr4_4:42805355-42805374 None:intergenic 40.0%
GAGAGATTTATCATGCAGTC+AGG - chr4_4:42805355-42805374 Msa0681910:five_prime_UTR 40.0%
AAGTAGGTTCTTTCACAAGC+AGG + chr4_4:42805426-42805445 None:intergenic 40.0%
AGAAGAGAGTGAGAAGTGAG+TGG + chr4_4:42801832-42801851 None:intergenic 45.0%
CTTCTCCGATCATCTTTCTC+CGG - chr4_4:42801847-42801866 Msa0681910:three_prime_UTR 45.0%
GAATTGAGGAGAGAGCTTGA+CGG + chr4_4:42801878-42801897 None:intergenic 45.0%
! CTGGAATTTGGAACGCGAAA+GGG + chr4_4:42801905-42801924 None:intergenic 45.0%
TTTCTTGGCAGCAGCAACAA+CGG + chr4_4:42801935-42801954 None:intergenic 45.0%
AAGGGTAACTCCACTGTTGA+AGG - chr4_4:42801970-42801989 Msa0681910:intron 45.0%
!! GTCTTGATTTGGGCCATGTT+TGG - chr4_4:42802201-42802220 Msa0681910:intron 45.0%
GAGTATGGTGATACCACCAA+TGG - chr4_4:42802937-42802956 Msa0681910:intron 45.0%
CTTCAGCCAAACCAAACCAT+AGG + chr4_4:42803027-42803046 None:intergenic 45.0%
!! GCATGACGGATTTCATCTTC+AGG + chr4_4:42803125-42803144 None:intergenic 45.0%
GAAGATGAAATCCGTCATGC+GGG - chr4_4:42803125-42803144 Msa0681910:intron 45.0%
GGCAACAATCGTTGACAATC+AGG - chr4_4:42803279-42803298 Msa0681910:intron 45.0%
ATCATGCAGATACCACTCAC+TGG - chr4_4:42803457-42803476 Msa0681910:intron 45.0%
CTCTCCCAATGACTGAATTG+GGG + chr4_4:42803483-42803502 None:intergenic 45.0%
GCTCTCCCAATGACTGAATT+GGG + chr4_4:42803484-42803503 None:intergenic 45.0%
CATGAGCTTGAAGATGACCT+TGG - chr4_4:42803514-42803533 Msa0681910:intron 45.0%
GCTTGAAGATGACCTTGGAA+AGG - chr4_4:42803519-42803538 Msa0681910:intron 45.0%
GGATGAACTAACCCTTTCCA+AGG + chr4_4:42803534-42803553 None:intergenic 45.0%
!! AGTTTGAGCACTGGAAATGC+CGG - chr4_4:42803842-42803861 Msa0681910:intron 45.0%
! CGCTGCATTTTCCCACATAT+TGG - chr4_4:42803977-42803996 Msa0681910:intron 45.0%
! TTCCCATTTTGTTGCCTGCT+TGG - chr4_4:42804320-42804339 Msa0681910:intron 45.0%
! TACAGTAAGGGTGCAGGTTA+GGG + chr4_4:42804708-42804727 None:intergenic 45.0%
! ATACAGTAAGGGTGCAGGTT+AGG + chr4_4:42804709-42804728 None:intergenic 45.0%
! GTGCTTGATTGTTTCAGGTG+TGG - chr4_4:42805125-42805144 Msa0681910:CDS 45.0%
! GAGAGTGTGACGCCATTGTT+AGG + chr4_4:42801795-42801814 None:intergenic 50.0%
AGACGCCGGAGAAAGATGAT+CGG + chr4_4:42801855-42801874 None:intergenic 50.0%
CGCGAAAGGGTTGAGAATTG+AGG + chr4_4:42801892-42801911 None:intergenic 50.0%
! GCTGGAATTTGGAACGCGAA+AGG + chr4_4:42801906-42801925 None:intergenic 50.0%
AACGGAGAGAGGCTGGAATT+TGG + chr4_4:42801917-42801936 None:intergenic 50.0%
!! GTATCACTGGCCTTACTCCA+GGG - chr4_4:42802795-42802814 Msa0681910:intron 50.0%
AACCATGAAGCCCTGGAGTA+AGG + chr4_4:42802808-42802827 None:intergenic 50.0%
AGGTGAAAACCATGAAGCCC+TGG + chr4_4:42802815-42802834 None:intergenic 50.0%
! AGGGCTTCATGGTTTTCACC+TGG - chr4_4:42802814-42802833 Msa0681910:intron 50.0%
! GGCATGAAGTATCACTCACC+AGG + chr4_4:42802835-42802854 None:intergenic 50.0%
TGTCGAGATACACCCATTGG+TGG + chr4_4:42802953-42802972 None:intergenic 50.0%
ACCAATGGGTGTATCTCGAC+AGG - chr4_4:42802952-42802971 Msa0681910:intron 50.0%
ACCTGTCGAGATACACCCAT+TGG + chr4_4:42802956-42802975 None:intergenic 50.0%
ACTGGCCCCAATTCAGTCAT+TGG - chr4_4:42803475-42803494 Msa0681910:intron 50.0%
CTGGCCCCAATTCAGTCATT+GGG - chr4_4:42803476-42803495 Msa0681910:intron 50.0%
GGCTCTCCCAATGACTGAAT+TGG + chr4_4:42803485-42803504 None:intergenic 50.0%
AGTCATTGGGAGAGCCTTAG+TGG - chr4_4:42803489-42803508 Msa0681910:intron 50.0%
ATGGCTACATATCACAGGGG+AGG - chr4_4:42803653-42803672 Msa0681910:intron 50.0%
GCATCTGCTCGTACTTATGC+AGG - chr4_4:42803806-42803825 Msa0681910:intron 50.0%
TCTGCTCGTACTTATGCAGG+TGG - chr4_4:42803809-42803828 Msa0681910:intron 50.0%
ACCACAGGCTAATCTTCCAC+CGG + chr4_4:42803864-42803883 None:intergenic 50.0%
ATTAGTGACATAGGCGACGC+AGG + chr4_4:42804781-42804800 None:intergenic 50.0%
GAGTGAGAAGTGAGTGGCGA+AGG + chr4_4:42801826-42801845 None:intergenic 55.0%
!! CGTATCACTGGCCTTACTCC+AGG - chr4_4:42802794-42802813 Msa0681910:intron 55.0%
GCACCGTGTGTCAACTGGTT+AGG + chr4_4:42803101-42803120 None:intergenic 55.0%
! GTGAAACACAGGCGTTGCAG+AGG - chr4_4:42803258-42803277 Msa0681910:intron 55.0%
ACTGAATTGGGGCCAGTGAG+TGG + chr4_4:42803472-42803491 None:intergenic 55.0%
!! TTGAGCACTGGAAATGCCGG+TGG - chr4_4:42803845-42803864 Msa0681910:intron 55.0%
CAGAGTGCACATCCTACACG+GGG + chr4_4:42804958-42804977 None:intergenic 55.0%
GCAGAGTGCACATCCTACAC+GGG + chr4_4:42804959-42804978 None:intergenic 55.0%
CGCAGAGTGCACATCCTACA+CGG + chr4_4:42804960-42804979 None:intergenic 55.0%
AGAGAGCTTGACGGAGACGC+CGG + chr4_4:42801869-42801888 None:intergenic 60.0%
CAGCAACAACGGAGAGAGGC+TGG + chr4_4:42801924-42801943 None:intergenic 60.0%
GCAGCAGCAACAACGGAGAG+AGG + chr4_4:42801928-42801947 None:intergenic 60.0%
GGCCTTACTCCAGGGCTTCA+TGG - chr4_4:42802803-42802822 Msa0681910:intron 60.0%
!! CAGGAGCACCGTGTGTCAAC+TGG + chr4_4:42803106-42803125 None:intergenic 60.0%
AATCCGTCATGCGGGTGACC+TGG - chr4_4:42803133-42803152 Msa0681910:intron 60.0%
ATCCGTCATGCGGGTGACCT+GGG - chr4_4:42803134-42803153 Msa0681910:intron 60.0%
TTCCCAGGTCACCCGCATGA+CGG + chr4_4:42803139-42803158 None:intergenic 60.0%
!! GCCGGTGGAAGATTAGCCTG+TGG - chr4_4:42803860-42803879 Msa0681910:intron 60.0%
TGACATAGGCGACGCAGGCA+TGG + chr4_4:42804776-42804795 None:intergenic 60.0%
GGGTTAAACCTGCCCCGTGT+AGG - chr4_4:42804943-42804962 Msa0681910:intron 60.0%
GTGCACATCCTACACGGGGC+AGG + chr4_4:42804954-42804973 None:intergenic 65.0%
GGCATGGCGCAGAGCAGGTC+AGG + chr4_4:42804760-42804779 None:intergenic 70.0%
ACGCAGGCATGGCGCAGAGC+AGG + chr4_4:42804765-42804784 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 42801595 42805468 42801595 ID=Msa0681910;Name=Msa0681910
chr4_4 mRNA 42801595 42805468 42801595 ID=Msa0681910-mRNA-1;Parent=Msa0681910;Name=Msa0681910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=192|1|1|1|1|1|8|301|206
chr4_4 exon 42801595 42801921 42801595 ID=Msa0681910-mRNA-1:exon:10278;Parent=Msa0681910-mRNA-1
chr4_4 exon 42803182 42803235 42803182 ID=Msa0681910-mRNA-1:exon:10277;Parent=Msa0681910-mRNA-1
chr4_4 exon 42803522 42803597 42803522 ID=Msa0681910-mRNA-1:exon:10276;Parent=Msa0681910-mRNA-1
chr4_4 exon 42803763 42803794 42803763 ID=Msa0681910-mRNA-1:exon:10275;Parent=Msa0681910-mRNA-1
chr4_4 exon 42803884 42803979 42803884 ID=Msa0681910-mRNA-1:exon:10274;Parent=Msa0681910-mRNA-1
chr4_4 exon 42804090 42804129 42804090 ID=Msa0681910-mRNA-1:exon:10273;Parent=Msa0681910-mRNA-1
chr4_4 exon 42804228 42804289 42804228 ID=Msa0681910-mRNA-1:exon:10272;Parent=Msa0681910-mRNA-1
chr4_4 exon 42805042 42805468 42805042 ID=Msa0681910-mRNA-1:exon:10271;Parent=Msa0681910-mRNA-1
chr4_4 five_prime_UTR 42805277 42805468 42805277 ID=Msa0681910-mRNA-1:five_prime_utr;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42805042 42805276 42805042 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42804228 42804289 42804228 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42804090 42804129 42804090 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42803884 42803979 42803884 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42803763 42803794 42803763 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42803522 42803597 42803522 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42803182 42803235 42803182 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 CDS 42801896 42801921 42801896 ID=Msa0681910-mRNA-1:cds;Parent=Msa0681910-mRNA-1
chr4_4 three_prime_UTR 42801595 42801895 42801595 ID=Msa0681910-mRNA-1:three_prime_utr;Parent=Msa0681910-mRNA-1
Gene Sequence

>Msa0681910

ATGCACCTAACAATGGCGTCACACTCTCTCATGTCACCTTCGCCACTCACTTCTCACTCTCTTCTCCGATCATCTTTCTCCGGCGTCTCCGTCAAGCTCTCTCCTCAATTCTCAACCCTTTCGCGTTCCAAATTCCAGCCTCTCTCCGTTGTTGCTGCTGCCAAGAAAGCTGTTGCAGTTCTTAAGGGTAACTCCACTGTTGAAGGTGTTGTTACTCTTACTCAAGAAAACGAAGGTCCAACAACAGTCAATGTTCGTATCACTGGCCTTACTCCAGGGCTTCATGGTTTTCACCTGCACGAGTATGGTGATACCACCAATGGGTGTATCTCGACAGGACCACATTTCAATCCTAACCAGTTGACACACGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAATTGCTGATGCCAACGGCGTTGCAGAGGCAACAATCGTTGACAATCAGATACCACTCACTGGCCCCAATTCAGTCATTGGGAGAGCCTTAGTGGTTCATGAGCTTGAAGATGACCTTGGAAAGGGTGGACATGAACTTAGTTTGAGCACTGGAAATGCCGGTGGAAGATTAGCCTGTGGTGTGGTTGGCTTGACTCCAGTATAA

Protein sequence

>Msa0681910

MHLTMASHSLMSPSPLTSHSLLRSSFSGVSVKLSPQFSTLSRSKFQPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV*