Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258910 | XP_013457710.3 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 1.22e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258910 | sp|Q8L7N3|CENPX_ARATH | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.85e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258910 | A0A072UQV7 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 5.83e-67 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1208600 | Msa1258910 | 0.973488 | 1.631606e-136 | -8.615850e-47 |
| Msa1208720 | Msa1258910 | 0.872414 | 3.238320e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258910 | MtrunA17_Chr4g0058121 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 1.12e-70 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258910 | AT1G78790.4 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1258910 | AT1G78790.1 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1258910 | AT1G78790.3 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1258910 | AT1G78790.2 | 53.535 | 99 | 28 | 1 | 5 | 103 | 6 | 86 | 1.66e-25 | 91.7 |
Find 29 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTAATGAAAATTAAA+AGG | 0.174624 | 8_2:+60231104 | Msa1258910:three_prime_UTR |
| ATTCCATCATGAAGCGTATT+TGG | 0.181659 | 8_2:+60229645 | Msa1258910:CDS |
| AGAAGTTGTCCGATTCTTCT+TGG | 0.300405 | 8_2:-60230568 | None:intergenic |
| TCAAATTGAAGCTACTCATT+TGG | 0.368792 | 8_2:+60230937 | Msa1258910:CDS |
| TGTTGCAACCAATGATGCTT+TGG | 0.379913 | 8_2:+60229785 | Msa1258910:CDS |
| AAGAAGAATCGGACAACTTC+TGG | 0.380642 | 8_2:+60230570 | Msa1258910:CDS |
| AGCTTACCTGTGAACTTCTC+CGG | 0.383589 | 8_2:+60230750 | Msa1258910:CDS |
| CTCGGAATCCAAAGCATCAT+TGG | 0.387476 | 8_2:-60229793 | None:intergenic |
| TATCTTAATGAAAATTAAAA+GGG | 0.400946 | 8_2:+60231105 | Msa1258910:three_prime_UTR |
| TCCATTTGTGATTGCAGCAA+AGG | 0.417096 | 8_2:-60229500 | None:intergenic |
| ATTTGGACATTGCGAACCTT+AGG | 0.435108 | 8_2:+60229662 | Msa1258910:CDS |
| TCCTTTGCTGCAATCACAAA+TGG | 0.445414 | 8_2:+60229499 | Msa1258910:exon |
| AACTATTACTCTCCCTATCA+TGG | 0.471346 | 8_2:+60231025 | Msa1258910:three_prime_UTR |
| CTGGATCGTCCAAGAAGAAT+CGG | 0.493954 | 8_2:+60230559 | Msa1258910:CDS |
| GCTTACCTGTGAACTTCTCC+GGG | 0.512267 | 8_2:+60230751 | Msa1258910:CDS |
| CAATGATGCTTTGGATTCCG+AGG | 0.519977 | 8_2:+60229794 | Msa1258910:CDS |
| TTACTGCTACAGGTAGCAGC+TGG | 0.525226 | 8_2:+60230540 | Msa1258910:intron |
| CACAACAAATGATATTCGCT+TGG | 0.529397 | 8_2:-60229452 | None:intergenic |
| AGCCGTACAGATTCGAAGGT+TGG | 0.537616 | 8_2:-60229527 | None:intergenic |
| TGTCCAAATACGCTTCATGA+TGG | 0.552980 | 8_2:-60229648 | None:intergenic |
| ACAGGTAAGCTTCAAAGCAC+TGG | 0.559640 | 8_2:-60230738 | None:intergenic |
| AACAAATGATATTCGCTTGG+AGG | 0.561409 | 8_2:-60229449 | None:intergenic |
| ACAAATGATATTCGCTTGGA+GGG | 0.568176 | 8_2:-60229448 | None:intergenic |
| AAATACGCTTCATGATGGAA+TGG | 0.583453 | 8_2:-60229643 | None:intergenic |
| GGATAGCCGTACAGATTCGA+AGG | 0.605653 | 8_2:-60229531 | None:intergenic |
| TATTGCTATTGCAGAGACTG+AGG | 0.624787 | 8_2:+60230907 | Msa1258910:CDS |
| TAGAAATCTAAAAGCAACTG+AGG | 0.627717 | 8_2:-60230971 | None:intergenic |
| ATTGCTATTGCAGAGACTGA+GGG | 0.649753 | 8_2:+60230908 | Msa1258910:CDS |
| ATTGCAGAGACTGAGGGTGA+TGG | 0.654914 | 8_2:+60230914 | Msa1258910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCTTAATGAAAATTAAA+AGG | + | chr8_2:60231104-60231123 | Msa1258910:three_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | + | chr8_2:60231105-60231124 | Msa1258910:three_prime_UTR | 10.0% |
| !! | TTATCTTAATGAAAATTAAA+AGG | + | chr8_2:60231104-60231123 | Msa1258910:three_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | + | chr8_2:60231105-60231124 | Msa1258910:three_prime_UTR | 10.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | - | chr8_2:60230448-60230467 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | - | chr8_2:60230449-60230468 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | - | chr8_2:60230794-60230813 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | - | chr8_2:60230795-60230814 | None:intergenic | 15.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | - | chr8_2:60230448-60230467 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | - | chr8_2:60230449-60230468 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | - | chr8_2:60230794-60230813 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | - | chr8_2:60230795-60230814 | None:intergenic | 15.0% |
| !! | AACAAAAAATTTGAAAACCT+CGG | - | chr8_2:60229814-60229833 | None:intergenic | 20.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | + | chr8_2:60230015-60230034 | Msa1258910:intron | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | - | chr8_2:60230280-60230299 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | + | chr8_2:60230285-60230304 | Msa1258910:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | + | chr8_2:60230308-60230327 | Msa1258910:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | - | chr8_2:60230357-60230376 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | + | chr8_2:60230377-60230396 | Msa1258910:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | - | chr8_2:60230438-60230457 | None:intergenic | 20.0% |
| !! | AACAAAAAATTTGAAAACCT+CGG | - | chr8_2:60229814-60229833 | None:intergenic | 20.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | + | chr8_2:60230015-60230034 | Msa1258910:intron | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | - | chr8_2:60230280-60230299 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | + | chr8_2:60230285-60230304 | Msa1258910:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | + | chr8_2:60230308-60230327 | Msa1258910:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | - | chr8_2:60230357-60230376 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | + | chr8_2:60230377-60230396 | Msa1258910:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | - | chr8_2:60230438-60230457 | None:intergenic | 20.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | - | chr8_2:60229607-60229626 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | + | chr8_2:60229613-60229632 | Msa1258910:intron | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | + | chr8_2:60229970-60229989 | Msa1258910:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | + | chr8_2:60230381-60230400 | Msa1258910:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | + | chr8_2:60230382-60230401 | Msa1258910:intron | 25.0% |
| ! | ATCTCCAACAAATAAGAAAT+CGG | - | chr8_2:60230622-60230641 | None:intergenic | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | + | chr8_2:60231055-60231074 | Msa1258910:three_prime_UTR | 25.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | - | chr8_2:60229607-60229626 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | + | chr8_2:60229613-60229632 | Msa1258910:intron | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | + | chr8_2:60229970-60229989 | Msa1258910:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | + | chr8_2:60230381-60230400 | Msa1258910:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | + | chr8_2:60230382-60230401 | Msa1258910:intron | 25.0% |
| ! | ATCTCCAACAAATAAGAAAT+CGG | - | chr8_2:60230622-60230641 | None:intergenic | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | + | chr8_2:60231055-60231074 | Msa1258910:three_prime_UTR | 25.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | - | chr8_2:60229555-60229574 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | - | chr8_2:60229579-60229598 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | - | chr8_2:60229892-60229911 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | + | chr8_2:60229918-60229937 | Msa1258910:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | + | chr8_2:60229941-60229960 | Msa1258910:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | + | chr8_2:60230021-60230040 | Msa1258910:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | + | chr8_2:60230022-60230041 | Msa1258910:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | - | chr8_2:60230269-60230288 | None:intergenic | 30.0% | |
| !!! | CATTTGTTTTTATGGTATGC+TGG | + | chr8_2:60230316-60230335 | Msa1258910:intron | 30.0% |
| GCAACGATTAAGAATTAAGT+AGG | - | chr8_2:60230497-60230516 | None:intergenic | 30.0% | |
| ! | TTGTCCGATTTCTTATTTGT+TGG | + | chr8_2:60230615-60230634 | Msa1258910:intron | 30.0% |
| ACAGAAAGGTTATGTCAATA+TGG | - | chr8_2:60230863-60230882 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | + | chr8_2:60230937-60230956 | Msa1258910:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | - | chr8_2:60230974-60230993 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | - | chr8_2:60231040-60231059 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | - | chr8_2:60231041-60231060 | None:intergenic | 30.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | - | chr8_2:60229555-60229574 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | - | chr8_2:60229579-60229598 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | - | chr8_2:60229892-60229911 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | + | chr8_2:60229918-60229937 | Msa1258910:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | + | chr8_2:60229941-60229960 | Msa1258910:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | + | chr8_2:60230021-60230040 | Msa1258910:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | + | chr8_2:60230022-60230041 | Msa1258910:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | - | chr8_2:60230269-60230288 | None:intergenic | 30.0% | |
| !!! | CATTTGTTTTTATGGTATGC+TGG | + | chr8_2:60230316-60230335 | Msa1258910:intron | 30.0% |
| GCAACGATTAAGAATTAAGT+AGG | - | chr8_2:60230497-60230516 | None:intergenic | 30.0% | |
| ! | TTGTCCGATTTCTTATTTGT+TGG | + | chr8_2:60230615-60230634 | Msa1258910:intron | 30.0% |
| ACAGAAAGGTTATGTCAATA+TGG | - | chr8_2:60230863-60230882 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | + | chr8_2:60230937-60230956 | Msa1258910:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | - | chr8_2:60230974-60230993 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | - | chr8_2:60231040-60231059 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | - | chr8_2:60231041-60231060 | None:intergenic | 30.0% |
| CACAACAAATGATATTCGCT+TGG | - | chr8_2:60229455-60229474 | None:intergenic | 35.0% | |
| GAGTGGAATTAGAGAAGAAA+GGG | - | chr8_2:60229562-60229581 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | - | chr8_2:60229563-60229582 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | - | chr8_2:60229646-60229665 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | + | chr8_2:60229645-60229664 | Msa1258910:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | + | chr8_2:60229855-60229874 | Msa1258910:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | + | chr8_2:60229919-60229938 | Msa1258910:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | + | chr8_2:60229928-60229947 | Msa1258910:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | + | chr8_2:60229949-60229968 | Msa1258910:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | + | chr8_2:60229976-60229995 | Msa1258910:intron | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | - | chr8_2:60230858-60230877 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | + | chr8_2:60231025-60231044 | Msa1258910:three_prime_UTR | 35.0% | |
| AACAAATGATATTCGCTTGG+AGG | - | chr8_2:60229452-60229471 | None:intergenic | 35.0% | |
| CACAACAAATGATATTCGCT+TGG | - | chr8_2:60229455-60229474 | None:intergenic | 35.0% | |
| GAGTGGAATTAGAGAAGAAA+GGG | - | chr8_2:60229562-60229581 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | - | chr8_2:60229563-60229582 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | - | chr8_2:60229646-60229665 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | + | chr8_2:60229645-60229664 | Msa1258910:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | + | chr8_2:60229855-60229874 | Msa1258910:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | + | chr8_2:60229919-60229938 | Msa1258910:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | + | chr8_2:60229928-60229947 | Msa1258910:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | + | chr8_2:60229949-60229968 | Msa1258910:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | + | chr8_2:60229976-60229995 | Msa1258910:intron | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | - | chr8_2:60230858-60230877 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | + | chr8_2:60231025-60231044 | Msa1258910:three_prime_UTR | 35.0% | |
| TCCTTTGCTGCAATCACAAA+TGG | + | chr8_2:60229499-60229518 | Msa1258910:exon | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | - | chr8_2:60229503-60229522 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | + | chr8_2:60229525-60229544 | Msa1258910:intron | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | - | chr8_2:60229651-60229670 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | + | chr8_2:60229662-60229681 | Msa1258910:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | - | chr8_2:60229681-60229700 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | + | chr8_2:60229785-60229804 | Msa1258910:CDS | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | + | chr8_2:60229920-60229939 | Msa1258910:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | + | chr8_2:60229927-60229946 | Msa1258910:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | - | chr8_2:60229996-60230015 | None:intergenic | 40.0% |
| ATAACACCGACACTTCAGAT+TGG | + | chr8_2:60230064-60230083 | Msa1258910:intron | 40.0% | |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | - | chr8_2:60230128-60230147 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | + | chr8_2:60230132-60230151 | Msa1258910:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | - | chr8_2:60230181-60230200 | None:intergenic | 40.0% |
| AACTGACACACACTCATACA+CGG | - | chr8_2:60230246-60230265 | None:intergenic | 40.0% | |
| TGCACTGTCTGTATTGCAAA+TGG | + | chr8_2:60230514-60230533 | Msa1258910:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | + | chr8_2:60230515-60230534 | Msa1258910:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | + | chr8_2:60230530-60230549 | Msa1258910:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | - | chr8_2:60230571-60230590 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | + | chr8_2:60230570-60230589 | Msa1258910:CDS | 40.0% | |
| ATGTCACACTGTAGTTGTCT+TGG | + | chr8_2:60230656-60230675 | Msa1258910:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | + | chr8_2:60230669-60230688 | Msa1258910:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | - | chr8_2:60230717-60230736 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | - | chr8_2:60230772-60230791 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | + | chr8_2:60230871-60230890 | Msa1258910:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | + | chr8_2:60230907-60230926 | Msa1258910:CDS | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | + | chr8_2:60230908-60230927 | Msa1258910:CDS | 40.0% |
| TCCTTTGCTGCAATCACAAA+TGG | + | chr8_2:60229499-60229518 | Msa1258910:exon | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | - | chr8_2:60229503-60229522 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | + | chr8_2:60229525-60229544 | Msa1258910:intron | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | - | chr8_2:60229651-60229670 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | + | chr8_2:60229662-60229681 | Msa1258910:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | - | chr8_2:60229681-60229700 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | + | chr8_2:60229785-60229804 | Msa1258910:CDS | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | + | chr8_2:60229920-60229939 | Msa1258910:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | + | chr8_2:60229927-60229946 | Msa1258910:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | - | chr8_2:60229996-60230015 | None:intergenic | 40.0% |
| ATAACACCGACACTTCAGAT+TGG | + | chr8_2:60230064-60230083 | Msa1258910:intron | 40.0% | |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | - | chr8_2:60230128-60230147 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | + | chr8_2:60230132-60230151 | Msa1258910:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | - | chr8_2:60230181-60230200 | None:intergenic | 40.0% |
| AACTGACACACACTCATACA+CGG | - | chr8_2:60230246-60230265 | None:intergenic | 40.0% | |
| TGCACTGTCTGTATTGCAAA+TGG | + | chr8_2:60230514-60230533 | Msa1258910:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | + | chr8_2:60230515-60230534 | Msa1258910:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | + | chr8_2:60230530-60230549 | Msa1258910:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | - | chr8_2:60230571-60230590 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | + | chr8_2:60230570-60230589 | Msa1258910:CDS | 40.0% | |
| ATGTCACACTGTAGTTGTCT+TGG | + | chr8_2:60230656-60230675 | Msa1258910:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | + | chr8_2:60230669-60230688 | Msa1258910:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | - | chr8_2:60230717-60230736 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | - | chr8_2:60230772-60230791 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | + | chr8_2:60230871-60230890 | Msa1258910:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | + | chr8_2:60230907-60230926 | Msa1258910:CDS | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | + | chr8_2:60230908-60230927 | Msa1258910:CDS | 40.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | - | chr8_2:60229796-60229815 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | + | chr8_2:60229794-60229813 | Msa1258910:CDS | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | + | chr8_2:60229992-60230011 | Msa1258910:intron | 45.0% |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | + | chr8_2:60230141-60230160 | Msa1258910:intron | 45.0% |
| CTGGATCGTCCAAGAAGAAT+CGG | + | chr8_2:60230559-60230578 | Msa1258910:CDS | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | - | chr8_2:60230741-60230760 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | + | chr8_2:60230750-60230769 | Msa1258910:CDS | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | - | chr8_2:60230759-60230778 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | + | chr8_2:60230764-60230783 | Msa1258910:CDS | 45.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | - | chr8_2:60229796-60229815 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | + | chr8_2:60229794-60229813 | Msa1258910:CDS | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | + | chr8_2:60229992-60230011 | Msa1258910:intron | 45.0% |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | + | chr8_2:60230141-60230160 | Msa1258910:intron | 45.0% |
| CTGGATCGTCCAAGAAGAAT+CGG | + | chr8_2:60230559-60230578 | Msa1258910:CDS | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | - | chr8_2:60230741-60230760 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | + | chr8_2:60230750-60230769 | Msa1258910:CDS | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | - | chr8_2:60230759-60230778 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | + | chr8_2:60230764-60230783 | Msa1258910:CDS | 45.0% |
| AGCCGTACAGATTCGAAGGT+TGG | - | chr8_2:60229530-60229549 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | - | chr8_2:60229534-60229553 | None:intergenic | 50.0% | |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | - | chr8_2:60230073-60230092 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | + | chr8_2:60230070-60230089 | Msa1258910:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | + | chr8_2:60230071-60230090 | Msa1258910:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | + | chr8_2:60230081-60230100 | Msa1258910:intron | 50.0% |
| CTCATACACGGTAGTGACAC+AGG | - | chr8_2:60230234-60230253 | None:intergenic | 50.0% | |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | + | chr8_2:60230395-60230414 | Msa1258910:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | + | chr8_2:60230540-60230559 | Msa1258910:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | - | chr8_2:60230726-60230745 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | - | chr8_2:60230727-60230746 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | + | chr8_2:60230751-60230770 | Msa1258910:CDS | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | - | chr8_2:60230877-60230896 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | + | chr8_2:60230914-60230933 | Msa1258910:CDS | 50.0% | |
| AGCCGTACAGATTCGAAGGT+TGG | - | chr8_2:60229530-60229549 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | - | chr8_2:60229534-60229553 | None:intergenic | 50.0% | |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | - | chr8_2:60230073-60230092 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | + | chr8_2:60230070-60230089 | Msa1258910:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | + | chr8_2:60230071-60230090 | Msa1258910:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | + | chr8_2:60230081-60230100 | Msa1258910:intron | 50.0% |
| CTCATACACGGTAGTGACAC+AGG | - | chr8_2:60230234-60230253 | None:intergenic | 50.0% | |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | + | chr8_2:60230395-60230414 | Msa1258910:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | + | chr8_2:60230540-60230559 | Msa1258910:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | - | chr8_2:60230726-60230745 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | - | chr8_2:60230727-60230746 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | + | chr8_2:60230751-60230770 | Msa1258910:CDS | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | - | chr8_2:60230877-60230896 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | + | chr8_2:60230914-60230933 | Msa1258910:CDS | 50.0% | |
| !! | ATCGGTGTCGTGTCGGATAC+CGG | - | chr8_2:60230163-60230182 | None:intergenic | 55.0% |
| !! | TGTCGCTATCGGTGTCGTGT+CGG | - | chr8_2:60230170-60230189 | None:intergenic | 55.0% |
| !! | ATCGGTGTCGTGTCGGATAC+CGG | - | chr8_2:60230163-60230182 | None:intergenic | 55.0% |
| !! | TGTCGCTATCGGTGTCGTGT+CGG | - | chr8_2:60230170-60230189 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 60229450 | 60231141 | 60229450 | ID=Msa1258910;Name=Msa1258910 |
| chr8_2 | mRNA | 60229450 | 60231141 | 60229450 | ID=Msa1258910-mRNA-1;Parent=Msa1258910;Name=Msa1258910-mRNA-1;_AED=0.31;_eAED=0.31;_QI=68|1|1|1|1|1|6|147|103 |
| chr8_2 | exon | 60229450 | 60229541 | 60229450 | ID=Msa1258910-mRNA-1:exon:18894;Parent=Msa1258910-mRNA-1 |
| chr8_2 | exon | 60229635 | 60229683 | 60229635 | ID=Msa1258910-mRNA-1:exon:18895;Parent=Msa1258910-mRNA-1 |
| chr8_2 | exon | 60229775 | 60229815 | 60229775 | ID=Msa1258910-mRNA-1:exon:18896;Parent=Msa1258910-mRNA-1 |
| chr8_2 | exon | 60230552 | 60230591 | 60230552 | ID=Msa1258910-mRNA-1:exon:18897;Parent=Msa1258910-mRNA-1 |
| chr8_2 | exon | 60230732 | 60230785 | 60230732 | ID=Msa1258910-mRNA-1:exon:18898;Parent=Msa1258910-mRNA-1 |
| chr8_2 | exon | 60230891 | 60231141 | 60230891 | ID=Msa1258910-mRNA-1:exon:18899;Parent=Msa1258910-mRNA-1 |
| chr8_2 | five_prime_UTR | 60229450 | 60229517 | 60229450 | ID=Msa1258910-mRNA-1:five_prime_utr;Parent=Msa1258910-mRNA-1 |
| chr8_2 | CDS | 60229518 | 60229541 | 60229518 | ID=Msa1258910-mRNA-1:cds;Parent=Msa1258910-mRNA-1 |
| chr8_2 | CDS | 60229635 | 60229683 | 60229635 | ID=Msa1258910-mRNA-1:cds;Parent=Msa1258910-mRNA-1 |
| chr8_2 | CDS | 60229775 | 60229815 | 60229775 | ID=Msa1258910-mRNA-1:cds;Parent=Msa1258910-mRNA-1 |
| chr8_2 | CDS | 60230552 | 60230591 | 60230552 | ID=Msa1258910-mRNA-1:cds;Parent=Msa1258910-mRNA-1 |
| chr8_2 | CDS | 60230732 | 60230785 | 60230732 | ID=Msa1258910-mRNA-1:cds;Parent=Msa1258910-mRNA-1 |
| chr8_2 | CDS | 60230891 | 60230994 | 60230891 | ID=Msa1258910-mRNA-1:cds;Parent=Msa1258910-mRNA-1 |
| chr8_2 | three_prime_UTR | 60230995 | 60231141 | 60230995 | ID=Msa1258910-mRNA-1:three_prime_utr;Parent=Msa1258910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
