Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208720 | XP_013457710.3 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 1.22e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208720 | sp|Q8L7N3|CENPX_ARATH | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.85e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa1208720 | 0.808698 | 2.725385e-50 | -8.615850e-47 |
| Msa0642650 | Msa1208720 | 0.802728 | 4.887451e-49 | -8.615850e-47 |
| Msa0651520 | Msa1208720 | -0.802418 | 5.662742e-49 | -8.615850e-47 |
| Msa0730180 | Msa1208720 | 0.802329 | 5.908881e-49 | -8.615850e-47 |
| Msa0423360 | Msa1208720 | -0.812633 | 3.843869e-51 | -8.615850e-47 |
| Msa1208600 | Msa1208720 | 0.922432 | 9.914823e-89 | -8.615850e-47 |
| Msa1208720 | Msa1258910 | 0.872414 | 3.238320e-67 | -8.615850e-47 |
| Msa1208720 | Msa1337090 | 0.802392 | 5.734181e-49 | -8.615850e-47 |
| Msa1208720 | Msa1418650 | 0.940575 | 1.845522e-100 | -8.615850e-47 |
| Msa0546380 | Msa1208720 | 0.824538 | 7.644954e-54 | -8.615850e-47 |
| Msa0890250 | Msa1208720 | 0.815457 | 9.156141e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208720 | MtrunA17_Chr4g0058121 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 1.12e-70 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208720 | AT1G78790.4 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1208720 | AT1G78790.1 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1208720 | AT1G78790.3 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1208720 | AT1G78790.2 | 53.535 | 99 | 28 | 1 | 5 | 103 | 6 | 86 | 1.66e-25 | 91.7 |
Find 29 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTAATGAAAATTAAA+AGG | 0.174624 | 8_1:+66993543 | Msa1208720:three_prime_UTR |
| ATTCCATCATGAAGCGTATT+TGG | 0.181659 | 8_1:+66992084 | Msa1208720:CDS |
| AGAAGTTGTCCGATTCTTCT+TGG | 0.300405 | 8_1:-66993007 | None:intergenic |
| TCAAATTGAAGCTACTCATT+TGG | 0.368792 | 8_1:+66993376 | Msa1208720:CDS |
| TGTTGCAACCAATGATGCTT+TGG | 0.379913 | 8_1:+66992224 | Msa1208720:CDS |
| AAGAAGAATCGGACAACTTC+TGG | 0.380642 | 8_1:+66993009 | Msa1208720:CDS |
| AGCTTACCTGTGAACTTCTC+CGG | 0.383589 | 8_1:+66993189 | Msa1208720:CDS |
| CTCGGAATCCAAAGCATCAT+TGG | 0.387476 | 8_1:-66992232 | None:intergenic |
| TATCTTAATGAAAATTAAAA+GGG | 0.400946 | 8_1:+66993544 | Msa1208720:three_prime_UTR |
| TCCATTTGTGATTGCAGCAA+AGG | 0.417096 | 8_1:-66991939 | None:intergenic |
| ATTTGGACATTGCGAACCTT+AGG | 0.435108 | 8_1:+66992101 | Msa1208720:CDS |
| TCCTTTGCTGCAATCACAAA+TGG | 0.445414 | 8_1:+66991938 | Msa1208720:exon |
| AACTATTACTCTCCCTATCA+TGG | 0.471346 | 8_1:+66993464 | Msa1208720:three_prime_UTR |
| CTGGATCGTCCAAGAAGAAT+CGG | 0.493954 | 8_1:+66992998 | Msa1208720:CDS |
| GCTTACCTGTGAACTTCTCC+GGG | 0.512267 | 8_1:+66993190 | Msa1208720:CDS |
| CAATGATGCTTTGGATTCCG+AGG | 0.519977 | 8_1:+66992233 | Msa1208720:CDS |
| TTACTGCTACAGGTAGCAGC+TGG | 0.525226 | 8_1:+66992979 | Msa1208720:intron |
| CACAACAAATGATATTCGCT+TGG | 0.529397 | 8_1:-66991891 | None:intergenic |
| AGCCGTACAGATTCGAAGGT+TGG | 0.537616 | 8_1:-66991966 | None:intergenic |
| TGTCCAAATACGCTTCATGA+TGG | 0.552980 | 8_1:-66992087 | None:intergenic |
| ACAGGTAAGCTTCAAAGCAC+TGG | 0.559640 | 8_1:-66993177 | None:intergenic |
| AACAAATGATATTCGCTTGG+AGG | 0.561409 | 8_1:-66991888 | None:intergenic |
| ACAAATGATATTCGCTTGGA+GGG | 0.568176 | 8_1:-66991887 | None:intergenic |
| AAATACGCTTCATGATGGAA+TGG | 0.583453 | 8_1:-66992082 | None:intergenic |
| GGATAGCCGTACAGATTCGA+AGG | 0.605653 | 8_1:-66991970 | None:intergenic |
| TATTGCTATTGCAGAGACTG+AGG | 0.624787 | 8_1:+66993346 | Msa1208720:CDS |
| TAGAAATCTAAAAGCAACTG+AGG | 0.627717 | 8_1:-66993410 | None:intergenic |
| ATTGCTATTGCAGAGACTGA+GGG | 0.649753 | 8_1:+66993347 | Msa1208720:CDS |
| ATTGCAGAGACTGAGGGTGA+TGG | 0.654914 | 8_1:+66993353 | Msa1208720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCTTAATGAAAATTAAA+AGG | + | chr8_1:66993543-66993562 | Msa1208720:three_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | + | chr8_1:66993544-66993563 | Msa1208720:three_prime_UTR | 10.0% |
| !! | TTATCTTAATGAAAATTAAA+AGG | + | chr8_1:66993543-66993562 | Msa1208720:three_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | + | chr8_1:66993544-66993563 | Msa1208720:three_prime_UTR | 10.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | - | chr8_1:66992887-66992906 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | - | chr8_1:66992888-66992907 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | - | chr8_1:66993233-66993252 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | - | chr8_1:66993234-66993253 | None:intergenic | 15.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | - | chr8_1:66992887-66992906 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | - | chr8_1:66992888-66992907 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | - | chr8_1:66993233-66993252 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | - | chr8_1:66993234-66993253 | None:intergenic | 15.0% |
| !! | AACAAAAAATTTGAAAACCT+CGG | - | chr8_1:66992253-66992272 | None:intergenic | 20.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | + | chr8_1:66992454-66992473 | Msa1208720:intron | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | - | chr8_1:66992719-66992738 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | + | chr8_1:66992724-66992743 | Msa1208720:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | + | chr8_1:66992747-66992766 | Msa1208720:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | - | chr8_1:66992796-66992815 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | + | chr8_1:66992816-66992835 | Msa1208720:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | - | chr8_1:66992877-66992896 | None:intergenic | 20.0% |
| !! | AACAAAAAATTTGAAAACCT+CGG | - | chr8_1:66992253-66992272 | None:intergenic | 20.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | + | chr8_1:66992454-66992473 | Msa1208720:intron | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | - | chr8_1:66992719-66992738 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | + | chr8_1:66992724-66992743 | Msa1208720:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | + | chr8_1:66992747-66992766 | Msa1208720:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | - | chr8_1:66992796-66992815 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | + | chr8_1:66992816-66992835 | Msa1208720:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | - | chr8_1:66992877-66992896 | None:intergenic | 20.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | - | chr8_1:66992046-66992065 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | + | chr8_1:66992052-66992071 | Msa1208720:intron | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | + | chr8_1:66992409-66992428 | Msa1208720:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | + | chr8_1:66992820-66992839 | Msa1208720:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | + | chr8_1:66992821-66992840 | Msa1208720:intron | 25.0% |
| ! | ATCTCCAACAAATAAGAAAT+CGG | - | chr8_1:66993061-66993080 | None:intergenic | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | + | chr8_1:66993494-66993513 | Msa1208720:three_prime_UTR | 25.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | - | chr8_1:66992046-66992065 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | + | chr8_1:66992052-66992071 | Msa1208720:intron | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | + | chr8_1:66992409-66992428 | Msa1208720:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | + | chr8_1:66992820-66992839 | Msa1208720:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | + | chr8_1:66992821-66992840 | Msa1208720:intron | 25.0% |
| ! | ATCTCCAACAAATAAGAAAT+CGG | - | chr8_1:66993061-66993080 | None:intergenic | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | + | chr8_1:66993494-66993513 | Msa1208720:three_prime_UTR | 25.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | - | chr8_1:66991994-66992013 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | - | chr8_1:66992018-66992037 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | - | chr8_1:66992331-66992350 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | + | chr8_1:66992357-66992376 | Msa1208720:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | + | chr8_1:66992380-66992399 | Msa1208720:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | + | chr8_1:66992460-66992479 | Msa1208720:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | + | chr8_1:66992461-66992480 | Msa1208720:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | - | chr8_1:66992708-66992727 | None:intergenic | 30.0% | |
| !!! | CATTTGTTTTTATGGTATGC+TGG | + | chr8_1:66992755-66992774 | Msa1208720:intron | 30.0% |
| GCAACGATTAAGAATTAAGT+AGG | - | chr8_1:66992936-66992955 | None:intergenic | 30.0% | |
| ! | TTGTCCGATTTCTTATTTGT+TGG | + | chr8_1:66993054-66993073 | Msa1208720:intron | 30.0% |
| ACAGAAAGGTTATGTCAATA+TGG | - | chr8_1:66993302-66993321 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | + | chr8_1:66993376-66993395 | Msa1208720:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | - | chr8_1:66993413-66993432 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | - | chr8_1:66993479-66993498 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | - | chr8_1:66993480-66993499 | None:intergenic | 30.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | - | chr8_1:66991994-66992013 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | - | chr8_1:66992018-66992037 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | - | chr8_1:66992331-66992350 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | + | chr8_1:66992357-66992376 | Msa1208720:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | + | chr8_1:66992380-66992399 | Msa1208720:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | + | chr8_1:66992460-66992479 | Msa1208720:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | + | chr8_1:66992461-66992480 | Msa1208720:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | - | chr8_1:66992708-66992727 | None:intergenic | 30.0% | |
| !!! | CATTTGTTTTTATGGTATGC+TGG | + | chr8_1:66992755-66992774 | Msa1208720:intron | 30.0% |
| GCAACGATTAAGAATTAAGT+AGG | - | chr8_1:66992936-66992955 | None:intergenic | 30.0% | |
| ! | TTGTCCGATTTCTTATTTGT+TGG | + | chr8_1:66993054-66993073 | Msa1208720:intron | 30.0% |
| ACAGAAAGGTTATGTCAATA+TGG | - | chr8_1:66993302-66993321 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | + | chr8_1:66993376-66993395 | Msa1208720:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | - | chr8_1:66993413-66993432 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | - | chr8_1:66993479-66993498 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | - | chr8_1:66993480-66993499 | None:intergenic | 30.0% |
| CACAACAAATGATATTCGCT+TGG | - | chr8_1:66991894-66991913 | None:intergenic | 35.0% | |
| GAGTGGAATTAGAGAAGAAA+GGG | - | chr8_1:66992001-66992020 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | - | chr8_1:66992002-66992021 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | - | chr8_1:66992085-66992104 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | + | chr8_1:66992084-66992103 | Msa1208720:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | + | chr8_1:66992294-66992313 | Msa1208720:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | + | chr8_1:66992358-66992377 | Msa1208720:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | + | chr8_1:66992367-66992386 | Msa1208720:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | + | chr8_1:66992388-66992407 | Msa1208720:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | + | chr8_1:66992415-66992434 | Msa1208720:intron | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | - | chr8_1:66993297-66993316 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | + | chr8_1:66993464-66993483 | Msa1208720:three_prime_UTR | 35.0% | |
| AACAAATGATATTCGCTTGG+AGG | - | chr8_1:66991891-66991910 | None:intergenic | 35.0% | |
| CACAACAAATGATATTCGCT+TGG | - | chr8_1:66991894-66991913 | None:intergenic | 35.0% | |
| GAGTGGAATTAGAGAAGAAA+GGG | - | chr8_1:66992001-66992020 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | - | chr8_1:66992002-66992021 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | - | chr8_1:66992085-66992104 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | + | chr8_1:66992084-66992103 | Msa1208720:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | + | chr8_1:66992294-66992313 | Msa1208720:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | + | chr8_1:66992358-66992377 | Msa1208720:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | + | chr8_1:66992367-66992386 | Msa1208720:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | + | chr8_1:66992388-66992407 | Msa1208720:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | + | chr8_1:66992415-66992434 | Msa1208720:intron | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | - | chr8_1:66993297-66993316 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | + | chr8_1:66993464-66993483 | Msa1208720:three_prime_UTR | 35.0% | |
| TCCTTTGCTGCAATCACAAA+TGG | + | chr8_1:66991938-66991957 | Msa1208720:exon | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | - | chr8_1:66991942-66991961 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | + | chr8_1:66991964-66991983 | Msa1208720:intron | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | - | chr8_1:66992090-66992109 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | + | chr8_1:66992101-66992120 | Msa1208720:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | - | chr8_1:66992120-66992139 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | + | chr8_1:66992224-66992243 | Msa1208720:CDS | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | + | chr8_1:66992359-66992378 | Msa1208720:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | + | chr8_1:66992366-66992385 | Msa1208720:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | - | chr8_1:66992435-66992454 | None:intergenic | 40.0% |
| ATAACACCGACACTTCAGAT+TGG | + | chr8_1:66992503-66992522 | Msa1208720:intron | 40.0% | |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | - | chr8_1:66992567-66992586 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | + | chr8_1:66992571-66992590 | Msa1208720:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | - | chr8_1:66992620-66992639 | None:intergenic | 40.0% |
| AACTGACACACACTCATACA+CGG | - | chr8_1:66992685-66992704 | None:intergenic | 40.0% | |
| TGCACTGTCTGTATTGCAAA+TGG | + | chr8_1:66992953-66992972 | Msa1208720:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | + | chr8_1:66992954-66992973 | Msa1208720:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | + | chr8_1:66992969-66992988 | Msa1208720:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | - | chr8_1:66993010-66993029 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | + | chr8_1:66993009-66993028 | Msa1208720:CDS | 40.0% | |
| ATGTCACACTGTAGTTGTCT+TGG | + | chr8_1:66993095-66993114 | Msa1208720:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | + | chr8_1:66993108-66993127 | Msa1208720:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | - | chr8_1:66993156-66993175 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | - | chr8_1:66993211-66993230 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | + | chr8_1:66993310-66993329 | Msa1208720:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | + | chr8_1:66993346-66993365 | Msa1208720:CDS | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | + | chr8_1:66993347-66993366 | Msa1208720:CDS | 40.0% |
| TCCTTTGCTGCAATCACAAA+TGG | + | chr8_1:66991938-66991957 | Msa1208720:exon | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | - | chr8_1:66991942-66991961 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | + | chr8_1:66991964-66991983 | Msa1208720:intron | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | - | chr8_1:66992090-66992109 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | + | chr8_1:66992101-66992120 | Msa1208720:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | - | chr8_1:66992120-66992139 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | + | chr8_1:66992224-66992243 | Msa1208720:CDS | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | + | chr8_1:66992359-66992378 | Msa1208720:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | + | chr8_1:66992366-66992385 | Msa1208720:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | - | chr8_1:66992435-66992454 | None:intergenic | 40.0% |
| ATAACACCGACACTTCAGAT+TGG | + | chr8_1:66992503-66992522 | Msa1208720:intron | 40.0% | |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | - | chr8_1:66992567-66992586 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | + | chr8_1:66992571-66992590 | Msa1208720:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | - | chr8_1:66992620-66992639 | None:intergenic | 40.0% |
| AACTGACACACACTCATACA+CGG | - | chr8_1:66992685-66992704 | None:intergenic | 40.0% | |
| TGCACTGTCTGTATTGCAAA+TGG | + | chr8_1:66992953-66992972 | Msa1208720:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | + | chr8_1:66992954-66992973 | Msa1208720:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | + | chr8_1:66992969-66992988 | Msa1208720:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | - | chr8_1:66993010-66993029 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | + | chr8_1:66993009-66993028 | Msa1208720:CDS | 40.0% | |
| ATGTCACACTGTAGTTGTCT+TGG | + | chr8_1:66993095-66993114 | Msa1208720:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | + | chr8_1:66993108-66993127 | Msa1208720:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | - | chr8_1:66993156-66993175 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | - | chr8_1:66993211-66993230 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | + | chr8_1:66993310-66993329 | Msa1208720:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | + | chr8_1:66993346-66993365 | Msa1208720:CDS | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | + | chr8_1:66993347-66993366 | Msa1208720:CDS | 40.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | - | chr8_1:66992235-66992254 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | + | chr8_1:66992233-66992252 | Msa1208720:CDS | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | + | chr8_1:66992431-66992450 | Msa1208720:intron | 45.0% |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | + | chr8_1:66992580-66992599 | Msa1208720:intron | 45.0% |
| CTGGATCGTCCAAGAAGAAT+CGG | + | chr8_1:66992998-66993017 | Msa1208720:CDS | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | - | chr8_1:66993180-66993199 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | + | chr8_1:66993189-66993208 | Msa1208720:CDS | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | - | chr8_1:66993198-66993217 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | + | chr8_1:66993203-66993222 | Msa1208720:CDS | 45.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | - | chr8_1:66992235-66992254 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | + | chr8_1:66992233-66992252 | Msa1208720:CDS | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | + | chr8_1:66992431-66992450 | Msa1208720:intron | 45.0% |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | + | chr8_1:66992580-66992599 | Msa1208720:intron | 45.0% |
| CTGGATCGTCCAAGAAGAAT+CGG | + | chr8_1:66992998-66993017 | Msa1208720:CDS | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | - | chr8_1:66993180-66993199 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | + | chr8_1:66993189-66993208 | Msa1208720:CDS | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | - | chr8_1:66993198-66993217 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | + | chr8_1:66993203-66993222 | Msa1208720:CDS | 45.0% |
| AGCCGTACAGATTCGAAGGT+TGG | - | chr8_1:66991969-66991988 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | - | chr8_1:66991973-66991992 | None:intergenic | 50.0% | |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | - | chr8_1:66992512-66992531 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | + | chr8_1:66992509-66992528 | Msa1208720:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | + | chr8_1:66992510-66992529 | Msa1208720:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | + | chr8_1:66992520-66992539 | Msa1208720:intron | 50.0% |
| CTCATACACGGTAGTGACAC+AGG | - | chr8_1:66992673-66992692 | None:intergenic | 50.0% | |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | + | chr8_1:66992834-66992853 | Msa1208720:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | + | chr8_1:66992979-66992998 | Msa1208720:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | - | chr8_1:66993165-66993184 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | - | chr8_1:66993166-66993185 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | + | chr8_1:66993190-66993209 | Msa1208720:CDS | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | - | chr8_1:66993316-66993335 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | + | chr8_1:66993353-66993372 | Msa1208720:CDS | 50.0% | |
| AGCCGTACAGATTCGAAGGT+TGG | - | chr8_1:66991969-66991988 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | - | chr8_1:66991973-66991992 | None:intergenic | 50.0% | |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | - | chr8_1:66992512-66992531 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | + | chr8_1:66992509-66992528 | Msa1208720:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | + | chr8_1:66992510-66992529 | Msa1208720:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | + | chr8_1:66992520-66992539 | Msa1208720:intron | 50.0% |
| CTCATACACGGTAGTGACAC+AGG | - | chr8_1:66992673-66992692 | None:intergenic | 50.0% | |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | + | chr8_1:66992834-66992853 | Msa1208720:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | + | chr8_1:66992979-66992998 | Msa1208720:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | - | chr8_1:66993165-66993184 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | - | chr8_1:66993166-66993185 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | + | chr8_1:66993190-66993209 | Msa1208720:CDS | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | - | chr8_1:66993316-66993335 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | + | chr8_1:66993353-66993372 | Msa1208720:CDS | 50.0% | |
| !! | ATCGGTGTCGTGTCGGATAC+CGG | - | chr8_1:66992602-66992621 | None:intergenic | 55.0% |
| !! | TGTCGCTATCGGTGTCGTGT+CGG | - | chr8_1:66992609-66992628 | None:intergenic | 55.0% |
| !! | ATCGGTGTCGTGTCGGATAC+CGG | - | chr8_1:66992602-66992621 | None:intergenic | 55.0% |
| !! | TGTCGCTATCGGTGTCGTGT+CGG | - | chr8_1:66992609-66992628 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 66991889 | 66993580 | 66991889 | ID=Msa1208720;Name=Msa1208720 |
| chr8_1 | mRNA | 66991889 | 66993580 | 66991889 | ID=Msa1208720-mRNA-1;Parent=Msa1208720;Name=Msa1208720-mRNA-1;_AED=0.31;_eAED=0.31;_QI=68|1|1|1|1|1|6|147|103 |
| chr8_1 | exon | 66991889 | 66991980 | 66991889 | ID=Msa1208720-mRNA-1:exon:22080;Parent=Msa1208720-mRNA-1 |
| chr8_1 | exon | 66992074 | 66992122 | 66992074 | ID=Msa1208720-mRNA-1:exon:22081;Parent=Msa1208720-mRNA-1 |
| chr8_1 | exon | 66992214 | 66992254 | 66992214 | ID=Msa1208720-mRNA-1:exon:22082;Parent=Msa1208720-mRNA-1 |
| chr8_1 | exon | 66992991 | 66993030 | 66992991 | ID=Msa1208720-mRNA-1:exon:22083;Parent=Msa1208720-mRNA-1 |
| chr8_1 | exon | 66993171 | 66993224 | 66993171 | ID=Msa1208720-mRNA-1:exon:22084;Parent=Msa1208720-mRNA-1 |
| chr8_1 | exon | 66993330 | 66993580 | 66993330 | ID=Msa1208720-mRNA-1:exon:22085;Parent=Msa1208720-mRNA-1 |
| chr8_1 | five_prime_UTR | 66991889 | 66991956 | 66991889 | ID=Msa1208720-mRNA-1:five_prime_utr;Parent=Msa1208720-mRNA-1 |
| chr8_1 | CDS | 66991957 | 66991980 | 66991957 | ID=Msa1208720-mRNA-1:cds;Parent=Msa1208720-mRNA-1 |
| chr8_1 | CDS | 66992074 | 66992122 | 66992074 | ID=Msa1208720-mRNA-1:cds;Parent=Msa1208720-mRNA-1 |
| chr8_1 | CDS | 66992214 | 66992254 | 66992214 | ID=Msa1208720-mRNA-1:cds;Parent=Msa1208720-mRNA-1 |
| chr8_1 | CDS | 66992991 | 66993030 | 66992991 | ID=Msa1208720-mRNA-1:cds;Parent=Msa1208720-mRNA-1 |
| chr8_1 | CDS | 66993171 | 66993224 | 66993171 | ID=Msa1208720-mRNA-1:cds;Parent=Msa1208720-mRNA-1 |
| chr8_1 | CDS | 66993330 | 66993433 | 66993330 | ID=Msa1208720-mRNA-1:cds;Parent=Msa1208720-mRNA-1 |
| chr8_1 | three_prime_UTR | 66993434 | 66993580 | 66993434 | ID=Msa1208720-mRNA-1:three_prime_utr;Parent=Msa1208720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
