Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208600 | XP_013457710.3 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 1.22e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208600 | sp|Q8L7N3|CENPX_ARATH | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.85e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1208600 | Msa1208720 | 0.922432 | 9.914823e-89 | -8.615850e-47 |
| Msa1208600 | Msa1258910 | 0.973488 | 1.631606e-136 | -8.615850e-47 |
| Msa1208600 | Msa1418650 | 0.837294 | 5.657713e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208600 | MtrunA17_Chr4g0058121 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 1.12e-70 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208600 | AT1G78790.4 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1208600 | AT1G78790.1 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1208600 | AT1G78790.3 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1208600 | AT1G78790.2 | 53.535 | 99 | 28 | 1 | 5 | 103 | 6 | 86 | 1.66e-25 | 91.7 |
Find 29 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTAATGAAAATTAAA+AGG | 0.174624 | 8_1:+66791991 | Msa1208600:three_prime_UTR |
| ATTCCATCATGAAGCGTATT+TGG | 0.181659 | 8_1:+66790532 | Msa1208600:CDS |
| AGAAGTTGTCCGATTCTTCT+TGG | 0.300405 | 8_1:-66791455 | None:intergenic |
| TCAAATTGAAGCTACTCATT+TGG | 0.368792 | 8_1:+66791824 | Msa1208600:CDS |
| TGTTGCAACCAATGATGCTT+TGG | 0.379913 | 8_1:+66790672 | Msa1208600:CDS |
| AAGAAGAATCGGACAACTTC+TGG | 0.380642 | 8_1:+66791457 | Msa1208600:CDS |
| AGCTTACCTGTGAACTTCTC+CGG | 0.383589 | 8_1:+66791637 | Msa1208600:CDS |
| CTCGGAATCCAAAGCATCAT+TGG | 0.387476 | 8_1:-66790680 | None:intergenic |
| TATCTTAATGAAAATTAAAA+GGG | 0.400946 | 8_1:+66791992 | Msa1208600:three_prime_UTR |
| TCCATTTGTGATTGCAGCAA+AGG | 0.417096 | 8_1:-66790387 | None:intergenic |
| ATTTGGACATTGCGAACCTT+AGG | 0.435108 | 8_1:+66790549 | Msa1208600:CDS |
| TCCTTTGCTGCAATCACAAA+TGG | 0.445414 | 8_1:+66790386 | Msa1208600:exon |
| AACTATTACTCTCCCTATCA+TGG | 0.471346 | 8_1:+66791912 | Msa1208600:three_prime_UTR |
| CACAACAAATGATATTCGCT+TGG | 0.484649 | 8_1:-66790341 | None:intergenic |
| CTGGATCGTCCAAGAAGAAT+CGG | 0.493954 | 8_1:+66791446 | Msa1208600:CDS |
| GCTTACCTGTGAACTTCTCC+GGG | 0.512267 | 8_1:+66791638 | Msa1208600:CDS |
| CAATGATGCTTTGGATTCCG+AGG | 0.519977 | 8_1:+66790681 | Msa1208600:CDS |
| TTACTGCTACAGGTAGCAGC+TGG | 0.525226 | 8_1:+66791427 | Msa1208600:intron |
| AGCCGTACAGATTCGAAGGT+TGG | 0.537616 | 8_1:-66790414 | None:intergenic |
| TGTCCAAATACGCTTCATGA+TGG | 0.552980 | 8_1:-66790535 | None:intergenic |
| ACAGGTAAGCTTCAAAGCAC+TGG | 0.559640 | 8_1:-66791625 | None:intergenic |
| AACAAATGATATTCGCTTGG+AGG | 0.561409 | 8_1:-66790338 | None:intergenic |
| ACAAATGATATTCGCTTGGA+GGG | 0.568176 | 8_1:-66790337 | None:intergenic |
| AAATACGCTTCATGATGGAA+TGG | 0.583453 | 8_1:-66790530 | None:intergenic |
| GGATAGCCGTACAGATTCGA+AGG | 0.605653 | 8_1:-66790418 | None:intergenic |
| TATTGCTATTGCAGAGACTG+AGG | 0.624787 | 8_1:+66791794 | Msa1208600:CDS |
| TAGAAATCTAAAAGCAACTG+AGG | 0.627717 | 8_1:-66791858 | None:intergenic |
| ATTGCTATTGCAGAGACTGA+GGG | 0.649753 | 8_1:+66791795 | Msa1208600:CDS |
| ATTGCAGAGACTGAGGGTGA+TGG | 0.654914 | 8_1:+66791801 | Msa1208600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCTTAATGAAAATTAAA+AGG | + | chr8_1:66791991-66792010 | Msa1208600:three_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | + | chr8_1:66791992-66792011 | Msa1208600:three_prime_UTR | 10.0% |
| !! | TTATCTTAATGAAAATTAAA+AGG | + | chr8_1:66791991-66792010 | Msa1208600:three_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | + | chr8_1:66791992-66792011 | Msa1208600:three_prime_UTR | 10.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | - | chr8_1:66791335-66791354 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | - | chr8_1:66791336-66791355 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | - | chr8_1:66791681-66791700 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | - | chr8_1:66791682-66791701 | None:intergenic | 15.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | - | chr8_1:66791335-66791354 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | - | chr8_1:66791336-66791355 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | - | chr8_1:66791681-66791700 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | - | chr8_1:66791682-66791701 | None:intergenic | 15.0% |
| !! | AACAAAAAATTTGAAAACCT+CGG | - | chr8_1:66790701-66790720 | None:intergenic | 20.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | + | chr8_1:66790902-66790921 | Msa1208600:intron | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | - | chr8_1:66791167-66791186 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | + | chr8_1:66791172-66791191 | Msa1208600:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | + | chr8_1:66791195-66791214 | Msa1208600:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | - | chr8_1:66791244-66791263 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | + | chr8_1:66791264-66791283 | Msa1208600:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | - | chr8_1:66791325-66791344 | None:intergenic | 20.0% |
| !! | AACAAAAAATTTGAAAACCT+CGG | - | chr8_1:66790701-66790720 | None:intergenic | 20.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | + | chr8_1:66790902-66790921 | Msa1208600:intron | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | - | chr8_1:66791167-66791186 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | + | chr8_1:66791172-66791191 | Msa1208600:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | + | chr8_1:66791195-66791214 | Msa1208600:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | - | chr8_1:66791244-66791263 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | + | chr8_1:66791264-66791283 | Msa1208600:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | - | chr8_1:66791325-66791344 | None:intergenic | 20.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | - | chr8_1:66790494-66790513 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | + | chr8_1:66790500-66790519 | Msa1208600:intron | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | + | chr8_1:66790857-66790876 | Msa1208600:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | + | chr8_1:66791268-66791287 | Msa1208600:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | + | chr8_1:66791269-66791288 | Msa1208600:intron | 25.0% |
| ! | ATCTCCAACAAATAAGAAAT+CGG | - | chr8_1:66791509-66791528 | None:intergenic | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | + | chr8_1:66791942-66791961 | Msa1208600:three_prime_UTR | 25.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | - | chr8_1:66790494-66790513 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | + | chr8_1:66790500-66790519 | Msa1208600:intron | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | + | chr8_1:66790857-66790876 | Msa1208600:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | + | chr8_1:66791268-66791287 | Msa1208600:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | + | chr8_1:66791269-66791288 | Msa1208600:intron | 25.0% |
| ! | ATCTCCAACAAATAAGAAAT+CGG | - | chr8_1:66791509-66791528 | None:intergenic | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | + | chr8_1:66791942-66791961 | Msa1208600:three_prime_UTR | 25.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | - | chr8_1:66790442-66790461 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | - | chr8_1:66790466-66790485 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | - | chr8_1:66790779-66790798 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | + | chr8_1:66790805-66790824 | Msa1208600:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | + | chr8_1:66790828-66790847 | Msa1208600:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | + | chr8_1:66790908-66790927 | Msa1208600:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | + | chr8_1:66790909-66790928 | Msa1208600:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | - | chr8_1:66791156-66791175 | None:intergenic | 30.0% | |
| !!! | CATTTGTTTTTATGGTATGC+TGG | + | chr8_1:66791203-66791222 | Msa1208600:intron | 30.0% |
| GCAACGATTAAGAATTAAGT+AGG | - | chr8_1:66791384-66791403 | None:intergenic | 30.0% | |
| ! | TTGTCCGATTTCTTATTTGT+TGG | + | chr8_1:66791502-66791521 | Msa1208600:intron | 30.0% |
| ACAGAAAGGTTATGTCAATA+TGG | - | chr8_1:66791750-66791769 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | + | chr8_1:66791824-66791843 | Msa1208600:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | - | chr8_1:66791861-66791880 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | - | chr8_1:66791927-66791946 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | - | chr8_1:66791928-66791947 | None:intergenic | 30.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | - | chr8_1:66790442-66790461 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | - | chr8_1:66790466-66790485 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | - | chr8_1:66790779-66790798 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | + | chr8_1:66790805-66790824 | Msa1208600:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | + | chr8_1:66790828-66790847 | Msa1208600:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | + | chr8_1:66790908-66790927 | Msa1208600:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | + | chr8_1:66790909-66790928 | Msa1208600:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | - | chr8_1:66791156-66791175 | None:intergenic | 30.0% | |
| !!! | CATTTGTTTTTATGGTATGC+TGG | + | chr8_1:66791203-66791222 | Msa1208600:intron | 30.0% |
| GCAACGATTAAGAATTAAGT+AGG | - | chr8_1:66791384-66791403 | None:intergenic | 30.0% | |
| ! | TTGTCCGATTTCTTATTTGT+TGG | + | chr8_1:66791502-66791521 | Msa1208600:intron | 30.0% |
| ACAGAAAGGTTATGTCAATA+TGG | - | chr8_1:66791750-66791769 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | + | chr8_1:66791824-66791843 | Msa1208600:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | - | chr8_1:66791861-66791880 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | - | chr8_1:66791927-66791946 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | - | chr8_1:66791928-66791947 | None:intergenic | 30.0% |
| CACAACAAATGATATTCGCT+TGG | - | chr8_1:66790344-66790363 | None:intergenic | 35.0% | |
| GAGTGGAATTAGAGAAGAAA+GGG | - | chr8_1:66790449-66790468 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | - | chr8_1:66790450-66790469 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | - | chr8_1:66790533-66790552 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | + | chr8_1:66790532-66790551 | Msa1208600:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | + | chr8_1:66790742-66790761 | Msa1208600:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | + | chr8_1:66790806-66790825 | Msa1208600:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | + | chr8_1:66790815-66790834 | Msa1208600:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | + | chr8_1:66790836-66790855 | Msa1208600:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | + | chr8_1:66790863-66790882 | Msa1208600:intron | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | - | chr8_1:66791745-66791764 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | + | chr8_1:66791912-66791931 | Msa1208600:three_prime_UTR | 35.0% | |
| AACAAATGATATTCGCTTGG+AGG | - | chr8_1:66790341-66790360 | None:intergenic | 35.0% | |
| CACAACAAATGATATTCGCT+TGG | - | chr8_1:66790344-66790363 | None:intergenic | 35.0% | |
| GAGTGGAATTAGAGAAGAAA+GGG | - | chr8_1:66790449-66790468 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | - | chr8_1:66790450-66790469 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | - | chr8_1:66790533-66790552 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | + | chr8_1:66790532-66790551 | Msa1208600:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | + | chr8_1:66790742-66790761 | Msa1208600:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | + | chr8_1:66790806-66790825 | Msa1208600:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | + | chr8_1:66790815-66790834 | Msa1208600:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | + | chr8_1:66790836-66790855 | Msa1208600:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | + | chr8_1:66790863-66790882 | Msa1208600:intron | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | - | chr8_1:66791745-66791764 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | + | chr8_1:66791912-66791931 | Msa1208600:three_prime_UTR | 35.0% | |
| TCCTTTGCTGCAATCACAAA+TGG | + | chr8_1:66790386-66790405 | Msa1208600:exon | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | - | chr8_1:66790390-66790409 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | + | chr8_1:66790412-66790431 | Msa1208600:intron | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | - | chr8_1:66790538-66790557 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | + | chr8_1:66790549-66790568 | Msa1208600:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | - | chr8_1:66790568-66790587 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | + | chr8_1:66790672-66790691 | Msa1208600:CDS | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | + | chr8_1:66790807-66790826 | Msa1208600:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | + | chr8_1:66790814-66790833 | Msa1208600:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | - | chr8_1:66790883-66790902 | None:intergenic | 40.0% |
| ATAACACCGACACTTCAGAT+TGG | + | chr8_1:66790951-66790970 | Msa1208600:intron | 40.0% | |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | - | chr8_1:66791015-66791034 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | + | chr8_1:66791019-66791038 | Msa1208600:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | - | chr8_1:66791068-66791087 | None:intergenic | 40.0% |
| AACTGACACACACTCATACA+CGG | - | chr8_1:66791133-66791152 | None:intergenic | 40.0% | |
| TGCACTGTCTGTATTGCAAA+TGG | + | chr8_1:66791401-66791420 | Msa1208600:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | + | chr8_1:66791402-66791421 | Msa1208600:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | + | chr8_1:66791417-66791436 | Msa1208600:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | - | chr8_1:66791458-66791477 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | + | chr8_1:66791457-66791476 | Msa1208600:CDS | 40.0% | |
| ATGTCACACTGTAGTTGTCT+TGG | + | chr8_1:66791543-66791562 | Msa1208600:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | + | chr8_1:66791556-66791575 | Msa1208600:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | - | chr8_1:66791604-66791623 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | - | chr8_1:66791659-66791678 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | + | chr8_1:66791758-66791777 | Msa1208600:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | + | chr8_1:66791794-66791813 | Msa1208600:CDS | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | + | chr8_1:66791795-66791814 | Msa1208600:CDS | 40.0% |
| TCCTTTGCTGCAATCACAAA+TGG | + | chr8_1:66790386-66790405 | Msa1208600:exon | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | - | chr8_1:66790390-66790409 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | + | chr8_1:66790412-66790431 | Msa1208600:intron | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | - | chr8_1:66790538-66790557 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | + | chr8_1:66790549-66790568 | Msa1208600:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | - | chr8_1:66790568-66790587 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | + | chr8_1:66790672-66790691 | Msa1208600:CDS | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | + | chr8_1:66790807-66790826 | Msa1208600:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | + | chr8_1:66790814-66790833 | Msa1208600:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | - | chr8_1:66790883-66790902 | None:intergenic | 40.0% |
| ATAACACCGACACTTCAGAT+TGG | + | chr8_1:66790951-66790970 | Msa1208600:intron | 40.0% | |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | - | chr8_1:66791015-66791034 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | + | chr8_1:66791019-66791038 | Msa1208600:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | - | chr8_1:66791068-66791087 | None:intergenic | 40.0% |
| AACTGACACACACTCATACA+CGG | - | chr8_1:66791133-66791152 | None:intergenic | 40.0% | |
| TGCACTGTCTGTATTGCAAA+TGG | + | chr8_1:66791401-66791420 | Msa1208600:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | + | chr8_1:66791402-66791421 | Msa1208600:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | + | chr8_1:66791417-66791436 | Msa1208600:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | - | chr8_1:66791458-66791477 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | + | chr8_1:66791457-66791476 | Msa1208600:CDS | 40.0% | |
| ATGTCACACTGTAGTTGTCT+TGG | + | chr8_1:66791543-66791562 | Msa1208600:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | + | chr8_1:66791556-66791575 | Msa1208600:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | - | chr8_1:66791604-66791623 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | - | chr8_1:66791659-66791678 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | + | chr8_1:66791758-66791777 | Msa1208600:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | + | chr8_1:66791794-66791813 | Msa1208600:CDS | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | + | chr8_1:66791795-66791814 | Msa1208600:CDS | 40.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | - | chr8_1:66790683-66790702 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | + | chr8_1:66790681-66790700 | Msa1208600:CDS | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | + | chr8_1:66790879-66790898 | Msa1208600:intron | 45.0% |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | + | chr8_1:66791028-66791047 | Msa1208600:intron | 45.0% |
| CTGGATCGTCCAAGAAGAAT+CGG | + | chr8_1:66791446-66791465 | Msa1208600:CDS | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | - | chr8_1:66791628-66791647 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | + | chr8_1:66791637-66791656 | Msa1208600:CDS | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | - | chr8_1:66791646-66791665 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | + | chr8_1:66791651-66791670 | Msa1208600:CDS | 45.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | - | chr8_1:66790683-66790702 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | + | chr8_1:66790681-66790700 | Msa1208600:CDS | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | + | chr8_1:66790879-66790898 | Msa1208600:intron | 45.0% |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | + | chr8_1:66791028-66791047 | Msa1208600:intron | 45.0% |
| CTGGATCGTCCAAGAAGAAT+CGG | + | chr8_1:66791446-66791465 | Msa1208600:CDS | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | - | chr8_1:66791628-66791647 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | + | chr8_1:66791637-66791656 | Msa1208600:CDS | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | - | chr8_1:66791646-66791665 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | + | chr8_1:66791651-66791670 | Msa1208600:CDS | 45.0% |
| AGCCGTACAGATTCGAAGGT+TGG | - | chr8_1:66790417-66790436 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | - | chr8_1:66790421-66790440 | None:intergenic | 50.0% | |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | - | chr8_1:66790960-66790979 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | + | chr8_1:66790957-66790976 | Msa1208600:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | + | chr8_1:66790958-66790977 | Msa1208600:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | + | chr8_1:66790968-66790987 | Msa1208600:intron | 50.0% |
| CTCATACACGGTAGTGACAC+AGG | - | chr8_1:66791121-66791140 | None:intergenic | 50.0% | |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | + | chr8_1:66791282-66791301 | Msa1208600:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | + | chr8_1:66791427-66791446 | Msa1208600:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | - | chr8_1:66791613-66791632 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | - | chr8_1:66791614-66791633 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | + | chr8_1:66791638-66791657 | Msa1208600:CDS | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | - | chr8_1:66791764-66791783 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | + | chr8_1:66791801-66791820 | Msa1208600:CDS | 50.0% | |
| AGCCGTACAGATTCGAAGGT+TGG | - | chr8_1:66790417-66790436 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | - | chr8_1:66790421-66790440 | None:intergenic | 50.0% | |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | - | chr8_1:66790960-66790979 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | + | chr8_1:66790957-66790976 | Msa1208600:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | + | chr8_1:66790958-66790977 | Msa1208600:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | + | chr8_1:66790968-66790987 | Msa1208600:intron | 50.0% |
| CTCATACACGGTAGTGACAC+AGG | - | chr8_1:66791121-66791140 | None:intergenic | 50.0% | |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | + | chr8_1:66791282-66791301 | Msa1208600:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | + | chr8_1:66791427-66791446 | Msa1208600:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | - | chr8_1:66791613-66791632 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | - | chr8_1:66791614-66791633 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | + | chr8_1:66791638-66791657 | Msa1208600:CDS | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | - | chr8_1:66791764-66791783 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | + | chr8_1:66791801-66791820 | Msa1208600:CDS | 50.0% | |
| !! | ATCGGTGTCGTGTCGGATAC+CGG | - | chr8_1:66791050-66791069 | None:intergenic | 55.0% |
| !! | TGTCGCTATCGGTGTCGTGT+CGG | - | chr8_1:66791057-66791076 | None:intergenic | 55.0% |
| !! | ATCGGTGTCGTGTCGGATAC+CGG | - | chr8_1:66791050-66791069 | None:intergenic | 55.0% |
| !! | TGTCGCTATCGGTGTCGTGT+CGG | - | chr8_1:66791057-66791076 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 66790339 | 66792028 | 66790339 | ID=Msa1208600;Name=Msa1208600 |
| chr8_1 | mRNA | 66790339 | 66792028 | 66790339 | ID=Msa1208600-mRNA-1;Parent=Msa1208600;Name=Msa1208600-mRNA-1;_AED=0.31;_eAED=0.31;_QI=66|1|1|1|1|1|6|147|103 |
| chr8_1 | exon | 66790339 | 66790428 | 66790339 | ID=Msa1208600-mRNA-1:exon:22009;Parent=Msa1208600-mRNA-1 |
| chr8_1 | exon | 66790522 | 66790570 | 66790522 | ID=Msa1208600-mRNA-1:exon:22010;Parent=Msa1208600-mRNA-1 |
| chr8_1 | exon | 66790662 | 66790702 | 66790662 | ID=Msa1208600-mRNA-1:exon:22011;Parent=Msa1208600-mRNA-1 |
| chr8_1 | exon | 66791439 | 66791478 | 66791439 | ID=Msa1208600-mRNA-1:exon:22012;Parent=Msa1208600-mRNA-1 |
| chr8_1 | exon | 66791619 | 66791672 | 66791619 | ID=Msa1208600-mRNA-1:exon:22013;Parent=Msa1208600-mRNA-1 |
| chr8_1 | exon | 66791778 | 66792028 | 66791778 | ID=Msa1208600-mRNA-1:exon:22014;Parent=Msa1208600-mRNA-1 |
| chr8_1 | five_prime_UTR | 66790339 | 66790404 | 66790339 | ID=Msa1208600-mRNA-1:five_prime_utr;Parent=Msa1208600-mRNA-1 |
| chr8_1 | CDS | 66790405 | 66790428 | 66790405 | ID=Msa1208600-mRNA-1:cds;Parent=Msa1208600-mRNA-1 |
| chr8_1 | CDS | 66790522 | 66790570 | 66790522 | ID=Msa1208600-mRNA-1:cds;Parent=Msa1208600-mRNA-1 |
| chr8_1 | CDS | 66790662 | 66790702 | 66790662 | ID=Msa1208600-mRNA-1:cds;Parent=Msa1208600-mRNA-1 |
| chr8_1 | CDS | 66791439 | 66791478 | 66791439 | ID=Msa1208600-mRNA-1:cds;Parent=Msa1208600-mRNA-1 |
| chr8_1 | CDS | 66791619 | 66791672 | 66791619 | ID=Msa1208600-mRNA-1:cds;Parent=Msa1208600-mRNA-1 |
| chr8_1 | CDS | 66791778 | 66791881 | 66791778 | ID=Msa1208600-mRNA-1:cds;Parent=Msa1208600-mRNA-1 |
| chr8_1 | three_prime_UTR | 66791882 | 66792028 | 66791882 | ID=Msa1208600-mRNA-1:three_prime_utr;Parent=Msa1208600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
