AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1260480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1260480 MtrunA17_Chr4g0061891 94.483 145 5 2 1 142 1 145 2.75e-93 266
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGTTTCTGATGCTTCTTC+TGG 0.144324 8_2:-62525947 Msa1260480:CDS
TAACTGCAAAGATCACTTAT+TGG 0.218669 8_2:+62526992 None:intergenic
TCATCACTTTCATCATCTTC+TGG 0.273861 8_2:+62525974 None:intergenic
TTCGACGAGACAAGAATTAA+AGG 0.275489 8_2:-62526898 Msa1260480:five_prime_UTR
ACTTATTCATTACCTTATTT+AGG 0.287012 8_2:+62526866 None:intergenic
CAACAACATGGGAAAGACTA+TGG 0.338944 8_2:-62525917 Msa1260480:CDS
TCTGGATGGACCATGTATAT+TGG 0.342364 8_2:-62526070 Msa1260480:CDS
TCTTTCCCATGTTGTTGAAT+TGG 0.342834 8_2:+62525923 None:intergenic
TAAAGGCAAGCCTTCAGTTC+AGG 0.344053 8_2:-62525744 Msa1260480:CDS
TGGTTTCTGATGCTTCTTCT+GGG 0.357913 8_2:-62525946 Msa1260480:CDS
GATCACTTATTGGTTGTTGT+TGG 0.390044 8_2:+62527002 None:intergenic
AGGGGTTTGAGACCTAAATA+AGG 0.393291 8_2:-62526878 Msa1260480:intron
CTGGATGGACCATGTATATT+GGG 0.393689 8_2:-62526069 Msa1260480:CDS
CTTATTGGTTGTTGTTGGAT+TGG 0.395136 8_2:+62527007 None:intergenic
TCGACGAGACAAGAATTAAA+GGG 0.398149 8_2:-62526897 Msa1260480:five_prime_UTR
GAATGTGAAAGCAGTGAATC+TGG 0.408814 8_2:-62526088 Msa1260480:CDS
TGATGAAAGTGATGATTCTA+TGG 0.423100 8_2:-62525966 Msa1260480:CDS
AAGAAGTTTGCAGATGGTAA+TGG 0.467923 8_2:-62525767 Msa1260480:CDS
GTGGTGGCAAGGTGAGAAAA+AGG 0.472090 8_2:-62525721 Msa1260480:CDS
CAACCACTTATGCTAGATTC+CGG 0.504367 8_2:-62525625 Msa1260480:three_prime_UTR
GCAAAGGAACGGAAAGAAAG+TGG 0.505274 8_2:-62525801 Msa1260480:CDS
TGCAAAATCCAACGGGAGAG+TGG 0.506236 8_2:+62526957 None:intergenic
TTTGCAGATGGTAATGGTAA+AGG 0.508477 8_2:-62525761 Msa1260480:CDS
AAAGGCAAGCCTTCAGTTCA+GGG 0.509054 8_2:-62525743 Msa1260480:CDS
CATCACTATCATCTTCTATG+TGG 0.530187 8_2:+62526044 None:intergenic
TCACCGGAATCTAGCATAAG+TGG 0.531291 8_2:+62525622 None:intergenic
ATTGATAACATGGATGATGA+AGG 0.534994 8_2:-62526016 Msa1260480:CDS
AAGCCTTCAGTTCAGGGTGG+TGG 0.535858 8_2:-62525737 Msa1260480:CDS
TTCAGTTCAGGGTGGTGGCA+AGG 0.541898 8_2:-62525732 Msa1260480:CDS
TTGCCACCACCCTGAACTGA+AGG 0.550018 8_2:+62525734 None:intergenic
ATCACTATCATCTTCTATGT+GGG 0.557807 8_2:+62526045 None:intergenic
CACATAGAAGATGATAGTGA+TGG 0.575886 8_2:-62526043 Msa1260480:CDS
CGACGAGACAAGAATTAAAG+GGG 0.576821 8_2:-62526896 Msa1260480:five_prime_UTR
TCTGGGCCAATTCAACAACA+TGG 0.586571 8_2:-62525929 Msa1260480:CDS
TGATGGAGATATTGATAACA+TGG 0.587302 8_2:-62526026 Msa1260480:CDS
TAGTAACTCCACTCTCCCGT+TGG 0.596560 8_2:-62526965 Msa1260480:five_prime_UTR
ATAAAACTTTGGAAAAGCAA+AGG 0.605010 8_2:-62525817 Msa1260480:CDS
AGACTATGGTTTCAAGCAAG+TGG 0.606860 8_2:-62525903 Msa1260480:CDS
AAAGAGAAGAAGTTTGCAGA+TGG 0.612808 8_2:-62525773 Msa1260480:CDS
CGGAATCTAGCATAAGTGGT+TGG 0.613037 8_2:+62525626 None:intergenic
TATGTGGGACCCAATATACA+TGG 0.618706 8_2:+62526060 None:intergenic
GTGAAAGCAGTGAATCTGGA+TGG 0.629063 8_2:-62526084 Msa1260480:CDS
CTGGGCCAATTCAACAACAT+GGG 0.629938 8_2:-62525928 Msa1260480:CDS
CTATGGTTTCAAGCAAGTGG+TGG 0.638759 8_2:-62525900 Msa1260480:CDS
ACTTTGGAAAAGCAAAGGAA+CGG 0.650922 8_2:-62525812 Msa1260480:CDS
GGCAAGCCTTCAGTTCAGGG+TGG 0.742474 8_2:-62525740 Msa1260480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATATTTAAATGCATAT+TGG + chr8_2:62525871-62525890 None:intergenic 15.0%
!! TGTATATTCATAATAACTTA+AGG + chr8_2:62526144-62526163 None:intergenic 15.0%
!! AGATATATTTAAATGCATAT+TGG + chr8_2:62525871-62525890 None:intergenic 15.0%
!! TGTATATTCATAATAACTTA+AGG + chr8_2:62526144-62526163 None:intergenic 15.0%
!!! ACTTATTCATTACCTTATTT+AGG + chr8_2:62525779-62525798 None:intergenic 20.0%
!! TAAAAAACAATTGTAAATCG+AGG - chr8_2:62526269-62526288 Msa1260480:intron 20.0%
!! AAAAAACAATTGTAAATCGA+GGG - chr8_2:62526270-62526289 Msa1260480:intron 20.0%
!! TATGGAGTATAAAATATTCT+CGG + chr8_2:62526304-62526323 None:intergenic 20.0%
!! AGTATATATCTCTCTTAAAT+AGG + chr8_2:62526447-62526466 None:intergenic 20.0%
!! GAAAAAAGCAAATAAAACTT+TGG - chr8_2:62526814-62526833 Msa1260480:intron 20.0%
!!! ACTTATTCATTACCTTATTT+AGG + chr8_2:62525779-62525798 None:intergenic 20.0%
!! TAAAAAACAATTGTAAATCG+AGG - chr8_2:62526269-62526288 Msa1260480:intron 20.0%
!! AAAAAACAATTGTAAATCGA+GGG - chr8_2:62526270-62526289 Msa1260480:intron 20.0%
!! TATGGAGTATAAAATATTCT+CGG + chr8_2:62526304-62526323 None:intergenic 20.0%
!! AGTATATATCTCTCTTAAAT+AGG + chr8_2:62526447-62526466 None:intergenic 20.0%
!! GAAAAAAGCAAATAAAACTT+TGG - chr8_2:62526814-62526833 Msa1260480:intron 20.0%
! AATAAGTCCTCTTAAACTAT+AGG - chr8_2:62525792-62525811 Msa1260480:CDS 25.0%
! TATAAGACCTATAGTTTAAG+AGG + chr8_2:62525802-62525821 None:intergenic 25.0%
! TGAATTTGAAAGGACAAAAA+GGG + chr8_2:62525970-62525989 None:intergenic 25.0%
! TTGAATTTGAAAGGACAAAA+AGG + chr8_2:62525971-62525990 None:intergenic 25.0%
! TAATTGGTATTTAGATTTCC+AGG - chr8_2:62526081-62526100 Msa1260480:CDS 25.0%
! TATGTTGAGTAGAGTAAATA+TGG + chr8_2:62526322-62526341 None:intergenic 25.0%
!! ATGAAACCATCCAAAAATTT+TGG - chr8_2:62526521-62526540 Msa1260480:intron 25.0%
!! ATAAAACTTTGGAAAAGCAA+AGG - chr8_2:62526825-62526844 Msa1260480:intron 25.0%
! AATAAGTCCTCTTAAACTAT+AGG - chr8_2:62525792-62525811 Msa1260480:CDS 25.0%
! TATAAGACCTATAGTTTAAG+AGG + chr8_2:62525802-62525821 None:intergenic 25.0%
! TGAATTTGAAAGGACAAAAA+GGG + chr8_2:62525970-62525989 None:intergenic 25.0%
! TTGAATTTGAAAGGACAAAA+AGG + chr8_2:62525971-62525990 None:intergenic 25.0%
! TAATTGGTATTTAGATTTCC+AGG - chr8_2:62526081-62526100 Msa1260480:CDS 25.0%
! TATGTTGAGTAGAGTAAATA+TGG + chr8_2:62526322-62526341 None:intergenic 25.0%
!! ATGAAACCATCCAAAAATTT+TGG - chr8_2:62526521-62526540 Msa1260480:intron 25.0%
!! ATAAAACTTTGGAAAAGCAA+AGG - chr8_2:62526825-62526844 Msa1260480:intron 25.0%
TAACTGCAAAGATCACTTAT+TGG + chr8_2:62525653-62525672 None:intergenic 30.0%
TGAAAAACTGCAAAATCCAA+CGG + chr8_2:62525696-62525715 None:intergenic 30.0%
CTGTCTTTCTCATTAATAAC+AGG - chr8_2:62525889-62525908 Msa1260480:CDS 30.0%
GAATTTGAAAGGACAAAAAG+GGG + chr8_2:62525969-62525988 None:intergenic 30.0%
GGTAAGTCAGAGAATTTAAT+TGG - chr8_2:62526065-62526084 Msa1260480:CDS 30.0%
GGTTAACAAAAGAAGATAGA+AGG + chr8_2:62526477-62526496 None:intergenic 30.0%
TTTGGATGGTTTCATCTTAA+AGG + chr8_2:62526516-62526535 None:intergenic 30.0%
!! TCACTTCCAAAATTTTTGGA+TGG + chr8_2:62526530-62526549 None:intergenic 30.0%
! CTCTTCACTTCCAAAATTTT+TGG + chr8_2:62526534-62526553 None:intergenic 30.0%
!! CAAAAATTTTGGAAGTGAAG+AGG - chr8_2:62526532-62526551 Msa1260480:intron 30.0%
ATCACTATCATCTTCTATGT+GGG + chr8_2:62526600-62526619 None:intergenic 30.0%
! TGATGGAGATATTGATAACA+TGG - chr8_2:62526616-62526635 Msa1260480:intron 30.0%
! ATTGATAACATGGATGATGA+AGG - chr8_2:62526626-62526645 Msa1260480:intron 30.0%
TGATGAAAGTGATGATTCTA+TGG - chr8_2:62526676-62526695 Msa1260480:intron 30.0%
TAACTGCAAAGATCACTTAT+TGG + chr8_2:62525653-62525672 None:intergenic 30.0%
TGAAAAACTGCAAAATCCAA+CGG + chr8_2:62525696-62525715 None:intergenic 30.0%
CTGTCTTTCTCATTAATAAC+AGG - chr8_2:62525889-62525908 Msa1260480:CDS 30.0%
GAATTTGAAAGGACAAAAAG+GGG + chr8_2:62525969-62525988 None:intergenic 30.0%
GGTAAGTCAGAGAATTTAAT+TGG - chr8_2:62526065-62526084 Msa1260480:CDS 30.0%
GGTTAACAAAAGAAGATAGA+AGG + chr8_2:62526477-62526496 None:intergenic 30.0%
TTTGGATGGTTTCATCTTAA+AGG + chr8_2:62526516-62526535 None:intergenic 30.0%
!! TCACTTCCAAAATTTTTGGA+TGG + chr8_2:62526530-62526549 None:intergenic 30.0%
! CTCTTCACTTCCAAAATTTT+TGG + chr8_2:62526534-62526553 None:intergenic 30.0%
!! CAAAAATTTTGGAAGTGAAG+AGG - chr8_2:62526532-62526551 Msa1260480:intron 30.0%
ATCACTATCATCTTCTATGT+GGG + chr8_2:62526600-62526619 None:intergenic 30.0%
! TGATGGAGATATTGATAACA+TGG - chr8_2:62526616-62526635 Msa1260480:intron 30.0%
! ATTGATAACATGGATGATGA+AGG - chr8_2:62526626-62526645 Msa1260480:intron 30.0%
TGATGAAAGTGATGATTCTA+TGG - chr8_2:62526676-62526695 Msa1260480:intron 30.0%
! CTTATTGGTTGTTGTTGGAT+TGG + chr8_2:62525638-62525657 None:intergenic 35.0%
! GATCACTTATTGGTTGTTGT+TGG + chr8_2:62525643-62525662 None:intergenic 35.0%
GAAAAACTGCAAAATCCAAC+GGG + chr8_2:62525695-62525714 None:intergenic 35.0%
TTCGACGAGACAAGAATTAA+AGG - chr8_2:62525744-62525763 Msa1260480:CDS 35.0%
TCGACGAGACAAGAATTAAA+GGG - chr8_2:62525745-62525764 Msa1260480:CDS 35.0%
CATATTGGTAGATTGCAACA+GGG + chr8_2:62525856-62525875 None:intergenic 35.0%
!! GAGTGTTGCTTGAATTTGAA+AGG + chr8_2:62525980-62525999 None:intergenic 35.0%
! ATTTAGATTTCCAGGTGTTG+TGG - chr8_2:62526089-62526108 Msa1260480:CDS 35.0%
TCATCTTAAAGGCAACAACA+AGG + chr8_2:62526505-62526524 None:intergenic 35.0%
CATCACTATCATCTTCTATG+TGG + chr8_2:62526601-62526620 None:intergenic 35.0%
! CACATAGAAGATGATAGTGA+TGG - chr8_2:62526599-62526618 Msa1260480:intron 35.0%
TCATCACTTTCATCATCTTC+TGG + chr8_2:62526671-62526690 None:intergenic 35.0%
TCTTTCCCATGTTGTTGAAT+TGG + chr8_2:62526722-62526741 None:intergenic 35.0%
! ACTTTGGAAAAGCAAAGGAA+CGG - chr8_2:62526830-62526849 Msa1260480:intron 35.0%
AAAGAGAAGAAGTTTGCAGA+TGG - chr8_2:62526869-62526888 Msa1260480:intron 35.0%
AAGAAGTTTGCAGATGGTAA+TGG - chr8_2:62526875-62526894 Msa1260480:intron 35.0%
!! TTTGCAGATGGTAATGGTAA+AGG - chr8_2:62526881-62526900 Msa1260480:five_prime_UTR 35.0%
CAAGGTGAGAAAAAGGAAAT+AGG - chr8_2:62526928-62526947 Msa1260480:five_prime_UTR 35.0%
! CTTATTGGTTGTTGTTGGAT+TGG + chr8_2:62525638-62525657 None:intergenic 35.0%
! GATCACTTATTGGTTGTTGT+TGG + chr8_2:62525643-62525662 None:intergenic 35.0%
GAAAAACTGCAAAATCCAAC+GGG + chr8_2:62525695-62525714 None:intergenic 35.0%
TTCGACGAGACAAGAATTAA+AGG - chr8_2:62525744-62525763 Msa1260480:CDS 35.0%
TCGACGAGACAAGAATTAAA+GGG - chr8_2:62525745-62525764 Msa1260480:CDS 35.0%
CATATTGGTAGATTGCAACA+GGG + chr8_2:62525856-62525875 None:intergenic 35.0%
!! GAGTGTTGCTTGAATTTGAA+AGG + chr8_2:62525980-62525999 None:intergenic 35.0%
! ATTTAGATTTCCAGGTGTTG+TGG - chr8_2:62526089-62526108 Msa1260480:CDS 35.0%
TCATCTTAAAGGCAACAACA+AGG + chr8_2:62526505-62526524 None:intergenic 35.0%
CATCACTATCATCTTCTATG+TGG + chr8_2:62526601-62526620 None:intergenic 35.0%
! CACATAGAAGATGATAGTGA+TGG - chr8_2:62526599-62526618 Msa1260480:intron 35.0%
TCATCACTTTCATCATCTTC+TGG + chr8_2:62526671-62526690 None:intergenic 35.0%
TCTTTCCCATGTTGTTGAAT+TGG + chr8_2:62526722-62526741 None:intergenic 35.0%
! ACTTTGGAAAAGCAAAGGAA+CGG - chr8_2:62526830-62526849 Msa1260480:intron 35.0%
AAAGAGAAGAAGTTTGCAGA+TGG - chr8_2:62526869-62526888 Msa1260480:intron 35.0%
AAGAAGTTTGCAGATGGTAA+TGG - chr8_2:62526875-62526894 Msa1260480:intron 35.0%
!! TTTGCAGATGGTAATGGTAA+AGG - chr8_2:62526881-62526900 Msa1260480:five_prime_UTR 35.0%
CAAGGTGAGAAAAAGGAAAT+AGG - chr8_2:62526928-62526947 Msa1260480:five_prime_UTR 35.0%
CGACGAGACAAGAATTAAAG+GGG - chr8_2:62525746-62525765 Msa1260480:CDS 40.0%
! AGGGGTTTGAGACCTAAATA+AGG - chr8_2:62525764-62525783 Msa1260480:CDS 40.0%
GCATATTGGTAGATTGCAAC+AGG + chr8_2:62525857-62525876 None:intergenic 40.0%
! TCATTGACTGCTTCTATAGC+TGG - chr8_2:62526033-62526052 Msa1260480:CDS 40.0%
TGTTGTGGCATGATATGGTA+TGG - chr8_2:62526104-62526123 Msa1260480:CDS 40.0%
AACATACCGAAGTTGACAAG+AGG - chr8_2:62526336-62526355 Msa1260480:intron 40.0%
ACATACCGAAGTTGACAAGA+GGG - chr8_2:62526337-62526356 Msa1260480:intron 40.0%
GGTTCACATAAGACTCGAAA+CGG - chr8_2:62526358-62526377 Msa1260480:intron 40.0%
AAAGGCAACAACAAGGAGAA+TGG + chr8_2:62526498-62526517 None:intergenic 40.0%
GAATGTGAAAGCAGTGAATC+TGG - chr8_2:62526554-62526573 Msa1260480:intron 40.0%
TCTGGATGGACCATGTATAT+TGG - chr8_2:62526572-62526591 Msa1260480:intron 40.0%
CTGGATGGACCATGTATATT+GGG - chr8_2:62526573-62526592 Msa1260480:intron 40.0%
TATGTGGGACCCAATATACA+TGG + chr8_2:62526585-62526604 None:intergenic 40.0%
ATGGTTTCTGATGCTTCTTC+TGG - chr8_2:62526695-62526714 Msa1260480:intron 40.0%
TGGTTTCTGATGCTTCTTCT+GGG - chr8_2:62526696-62526715 Msa1260480:intron 40.0%
CAACAACATGGGAAAGACTA+TGG - chr8_2:62526725-62526744 Msa1260480:intron 40.0%
AGACTATGGTTTCAAGCAAG+TGG - chr8_2:62526739-62526758 Msa1260480:intron 40.0%
CAACCACTTATGCTAGATTC+CGG - chr8_2:62527017-62527036 Msa1260480:five_prime_UTR 40.0%
CGACGAGACAAGAATTAAAG+GGG - chr8_2:62525746-62525765 Msa1260480:CDS 40.0%
! AGGGGTTTGAGACCTAAATA+AGG - chr8_2:62525764-62525783 Msa1260480:CDS 40.0%
GCATATTGGTAGATTGCAAC+AGG + chr8_2:62525857-62525876 None:intergenic 40.0%
! TCATTGACTGCTTCTATAGC+TGG - chr8_2:62526033-62526052 Msa1260480:CDS 40.0%
TGTTGTGGCATGATATGGTA+TGG - chr8_2:62526104-62526123 Msa1260480:CDS 40.0%
AACATACCGAAGTTGACAAG+AGG - chr8_2:62526336-62526355 Msa1260480:intron 40.0%
ACATACCGAAGTTGACAAGA+GGG - chr8_2:62526337-62526356 Msa1260480:intron 40.0%
GGTTCACATAAGACTCGAAA+CGG - chr8_2:62526358-62526377 Msa1260480:intron 40.0%
AAAGGCAACAACAAGGAGAA+TGG + chr8_2:62526498-62526517 None:intergenic 40.0%
GAATGTGAAAGCAGTGAATC+TGG - chr8_2:62526554-62526573 Msa1260480:intron 40.0%
TCTGGATGGACCATGTATAT+TGG - chr8_2:62526572-62526591 Msa1260480:intron 40.0%
CTGGATGGACCATGTATATT+GGG - chr8_2:62526573-62526592 Msa1260480:intron 40.0%
TATGTGGGACCCAATATACA+TGG + chr8_2:62526585-62526604 None:intergenic 40.0%
ATGGTTTCTGATGCTTCTTC+TGG - chr8_2:62526695-62526714 Msa1260480:intron 40.0%
TGGTTTCTGATGCTTCTTCT+GGG - chr8_2:62526696-62526715 Msa1260480:intron 40.0%
CAACAACATGGGAAAGACTA+TGG - chr8_2:62526725-62526744 Msa1260480:intron 40.0%
AGACTATGGTTTCAAGCAAG+TGG - chr8_2:62526739-62526758 Msa1260480:intron 40.0%
!! TGATCAAGAAAGTGTCGAGC+TGG - chr8_2:62526203-62526222 Msa1260480:intron 45.0%
GTGAACCCTCTTGTCAACTT+CGG + chr8_2:62526345-62526364 None:intergenic 45.0%
GTGAAAGCAGTGAATCTGGA+TGG - chr8_2:62526558-62526577 Msa1260480:intron 45.0%
TCTGGGCCAATTCAACAACA+TGG - chr8_2:62526713-62526732 Msa1260480:intron 45.0%
CTGGGCCAATTCAACAACAT+GGG - chr8_2:62526714-62526733 Msa1260480:intron 45.0%
CTATGGTTTCAAGCAAGTGG+TGG - chr8_2:62526742-62526761 Msa1260480:intron 45.0%
GCAAAGGAACGGAAAGAAAG+TGG - chr8_2:62526841-62526860 Msa1260480:intron 45.0%
TAAAGGCAAGCCTTCAGTTC+AGG - chr8_2:62526898-62526917 Msa1260480:five_prime_UTR 45.0%
AAAGGCAAGCCTTCAGTTCA+GGG - chr8_2:62526899-62526918 Msa1260480:five_prime_UTR 45.0%
CGGAATCTAGCATAAGTGGT+TGG + chr8_2:62527019-62527038 None:intergenic 45.0%
!! TGATCAAGAAAGTGTCGAGC+TGG - chr8_2:62526203-62526222 Msa1260480:intron 45.0%
GTGAACCCTCTTGTCAACTT+CGG + chr8_2:62526345-62526364 None:intergenic 45.0%
GTGAAAGCAGTGAATCTGGA+TGG - chr8_2:62526558-62526577 Msa1260480:intron 45.0%
TCTGGGCCAATTCAACAACA+TGG - chr8_2:62526713-62526732 Msa1260480:intron 45.0%
CTGGGCCAATTCAACAACAT+GGG - chr8_2:62526714-62526733 Msa1260480:intron 45.0%
CTATGGTTTCAAGCAAGTGG+TGG - chr8_2:62526742-62526761 Msa1260480:intron 45.0%
GCAAAGGAACGGAAAGAAAG+TGG - chr8_2:62526841-62526860 Msa1260480:intron 45.0%
TAAAGGCAAGCCTTCAGTTC+AGG - chr8_2:62526898-62526917 Msa1260480:five_prime_UTR 45.0%
AAAGGCAAGCCTTCAGTTCA+GGG - chr8_2:62526899-62526918 Msa1260480:five_prime_UTR 45.0%
CGGAATCTAGCATAAGTGGT+TGG + chr8_2:62527019-62527038 None:intergenic 45.0%
TAGTAACTCCACTCTCCCGT+TGG - chr8_2:62525677-62525696 Msa1260480:three_prime_UTR 50.0%
TGCAAAATCCAACGGGAGAG+TGG + chr8_2:62525688-62525707 None:intergenic 50.0%
TTCTATAGCTGGCTGCTGCT+TGG - chr8_2:62526044-62526063 Msa1260480:CDS 50.0%
CCATATCATGCCACAACACC+TGG + chr8_2:62526102-62526121 None:intergenic 50.0%
! CCAGGTGTTGTGGCATGATA+TGG - chr8_2:62526099-62526118 Msa1260480:CDS 50.0%
!!! ACGCTGCTACTGCTTTTTCG+AGG + chr8_2:62526390-62526409 None:intergenic 50.0%
CGAAAAAGCAGTAGCAGCGT+CGG - chr8_2:62526390-62526409 Msa1260480:intron 50.0%
GTGGTGGCAAGGTGAGAAAA+AGG - chr8_2:62526921-62526940 Msa1260480:five_prime_UTR 50.0%
TAGTAACTCCACTCTCCCGT+TGG - chr8_2:62525677-62525696 Msa1260480:three_prime_UTR 50.0%
TGCAAAATCCAACGGGAGAG+TGG + chr8_2:62525688-62525707 None:intergenic 50.0%
TTCTATAGCTGGCTGCTGCT+TGG - chr8_2:62526044-62526063 Msa1260480:CDS 50.0%
CCATATCATGCCACAACACC+TGG + chr8_2:62526102-62526121 None:intergenic 50.0%
! CCAGGTGTTGTGGCATGATA+TGG - chr8_2:62526099-62526118 Msa1260480:CDS 50.0%
!!! ACGCTGCTACTGCTTTTTCG+AGG + chr8_2:62526390-62526409 None:intergenic 50.0%
CGAAAAAGCAGTAGCAGCGT+CGG - chr8_2:62526390-62526409 Msa1260480:intron 50.0%
GTGGTGGCAAGGTGAGAAAA+AGG - chr8_2:62526921-62526940 Msa1260480:five_prime_UTR 50.0%
!! AAAGCAGTAGCAGCGTCGGT+CGG - chr8_2:62526394-62526413 Msa1260480:intron 55.0%
AAGCCTTCAGTTCAGGGTGG+TGG - chr8_2:62526905-62526924 Msa1260480:five_prime_UTR 55.0%
TTGCCACCACCCTGAACTGA+AGG + chr8_2:62526911-62526930 None:intergenic 55.0%
! TTCAGTTCAGGGTGGTGGCA+AGG - chr8_2:62526910-62526929 Msa1260480:five_prime_UTR 55.0%
!! AAAGCAGTAGCAGCGTCGGT+CGG - chr8_2:62526394-62526413 Msa1260480:intron 55.0%
AAGCCTTCAGTTCAGGGTGG+TGG - chr8_2:62526905-62526924 Msa1260480:five_prime_UTR 55.0%
TTGCCACCACCCTGAACTGA+AGG + chr8_2:62526911-62526930 None:intergenic 55.0%
! TTCAGTTCAGGGTGGTGGCA+AGG - chr8_2:62526910-62526929 Msa1260480:five_prime_UTR 55.0%
GGCAAGCCTTCAGTTCAGGG+TGG - chr8_2:62526902-62526921 Msa1260480:five_prime_UTR 60.0%
GGCAAGCCTTCAGTTCAGGG+TGG - chr8_2:62526902-62526921 Msa1260480:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 62525625 62527039 62525625 ID=Msa1260480;Name=Msa1260480
chr8_2 mRNA 62525625 62527039 62525625 ID=Msa1260480-mRNA-1;Parent=Msa1260480;Name=Msa1260480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=161|1|1|1|0|0.5|2|90|142
chr8_2 exon 62525625 62526143 62525625 ID=Msa1260480-mRNA-1:exon:19832;Parent=Msa1260480-mRNA-1
chr8_2 exon 62526879 62527039 62526879 ID=Msa1260480-mRNA-1:exon:19831;Parent=Msa1260480-mRNA-1
chr8_2 five_prime_UTR 62526879 62527039 62526879 ID=Msa1260480-mRNA-1:five_prime_utr;Parent=Msa1260480-mRNA-1
chr8_2 CDS 62525715 62526143 62525715 ID=Msa1260480-mRNA-1:cds;Parent=Msa1260480-mRNA-1
chr8_2 three_prime_UTR 62525625 62525714 62525625 ID=Msa1260480-mRNA-1:three_prime_utr;Parent=Msa1260480-mRNA-1
Gene Sequence

>Msa1260480

ATGAAACCATCCAAAAATTTTGGAAGTGAAGAGGAATGTGAAAGCAGTGAATCTGGATGGACCATGTATATTGGGTCCCACATAGAAGATGATAGTGATGGAGATATTGATAACATGGATGATGAAGGAAGAACTCATCAAGCTGATCCAGAAGATGATGAAAGTGATGATTCTATGGTTTCTGATGCTTCTTCTGGGCCAATTCAACAACATGGGAAAGACTATGGTTTCAAGCAAGTGGTGGTTGAAGTTGAAGAGAATCAATATGATGATGAAAACAAGTATTGCTTAGAGAAAAAAGCAAATAAAACTTTGGAAAAGCAAAGGAACGGAAAGAAAGTGGAAAACAAAGAGAAGAAGTTTGCAGATGGTAATGGTAAAGGCAAGCCTTCAGTTCAGGGTGGTGGCAAGGTGAGAAAAAGGAAATAG
Protein sequence

>Msa1260480

MKPSKNFGSEEECESSESGWTMYIGSHIEDDSDGDIDNMDDEGRTHQADPEDDESDDSMVSDASSGPIQQHGKDYGFKQVVVEVEENQYDDENKYCLEKKANKTLEKQRNGKKVENKEKKFADGNGKGKPSVQGGGKVRKRK*