Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260880 | XP_025680304.1 | 80.952 | 126 | 23 | 1 | 305 | 430 | 96 | 220 | 1.04e-57 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260880 | sp|Q3B724|CALS5_ARATH | 72.000 | 125 | 34 | 1 | 305 | 429 | 98 | 221 | 1.88e-47 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0424320 | Msa1260880 | 0.805562 | 1.257177e-49 | -8.615850e-47 |
| Msa0877250 | Msa1260880 | 0.806065 | 9.855477e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260880 | MtrunA17_Chr7g0255561 | 90.909 | 99 | 9 | 0 | 1 | 99 | 171 | 269 | 1.49e-58 | 197 |
| Msa1260880 | MtrunA17_Chr7g0255581 | 90.909 | 99 | 9 | 0 | 1 | 99 | 171 | 269 | 1.49e-58 | 197 |
| Msa1260880 | MtrunA17_Chr8g0384241 | 90.400 | 125 | 12 | 0 | 305 | 429 | 35 | 159 | 1.44e-55 | 197 |
| Msa1260880 | MtrunA17_Chr3g0130141 | 76.800 | 125 | 28 | 1 | 305 | 429 | 96 | 219 | 2.12e-51 | 187 |
| Msa1260880 | MtrunA17_Chr1g0186361 | 76.289 | 97 | 18 | 1 | 232 | 328 | 603 | 694 | 1.92e-38 | 148 |
| Msa1260880 | MtrunA17_Chr1g0168291 | 54.167 | 120 | 45 | 2 | 230 | 339 | 163 | 282 | 3.74e-31 | 124 |
| Msa1260880 | MtrunA17_Chr8g0354121 | 59.596 | 99 | 38 | 2 | 3 | 99 | 171 | 269 | 6.05e-30 | 120 |
| Msa1260880 | MtrunA17_Chr1g0213421 | 55.932 | 118 | 49 | 3 | 316 | 432 | 113 | 228 | 1.39e-27 | 116 |
| Msa1260880 | MtrunA17_Chr2g0308711 | 54.867 | 113 | 49 | 2 | 317 | 429 | 107 | 217 | 2.90e-27 | 115 |
| Msa1260880 | MtrunA17_Chr7g0214481 | 56.522 | 115 | 47 | 3 | 316 | 429 | 110 | 222 | 4.35e-27 | 115 |
| Msa1260880 | MtrunA17_Chr3g0081511 | 54.082 | 98 | 40 | 3 | 7 | 99 | 173 | 270 | 4.32e-25 | 106 |
| Msa1260880 | MtrunA17_Chr3g0081421 | 47.000 | 100 | 52 | 1 | 1 | 99 | 174 | 273 | 8.96e-24 | 102 |
| Msa1260880 | MtrunA17_Chr1g0160181 | 48.913 | 92 | 46 | 1 | 9 | 99 | 181 | 272 | 6.51e-21 | 94.0 |
| Msa1260880 | MtrunA17_Chr3g0114701 | 46.739 | 92 | 48 | 1 | 9 | 99 | 172 | 263 | 9.13e-21 | 93.6 |
| Msa1260880 | MtrunA17_Chr1g0177221 | 47.126 | 87 | 45 | 1 | 9 | 94 | 178 | 264 | 7.22e-18 | 83.2 |
| Msa1260880 | MtrunA17_Chr3g0114691 | 40.000 | 95 | 56 | 1 | 6 | 99 | 179 | 273 | 1.46e-17 | 84.3 |
| Msa1260880 | MtrunA17_Chr7g0263101 | 51.250 | 80 | 38 | 1 | 21 | 99 | 186 | 265 | 1.13e-16 | 81.3 |
| Msa1260880 | MtrunA17_Chr1g0160171 | 42.222 | 90 | 52 | 0 | 10 | 99 | 178 | 267 | 1.23e-16 | 81.3 |
| Msa1260880 | MtrunA17_Chr1g0182291 | 40.000 | 95 | 53 | 2 | 3 | 96 | 171 | 262 | 5.91e-16 | 79.0 |
| Msa1260880 | MtrunA17_Chr7g0214671 | 59.322 | 59 | 23 | 1 | 316 | 373 | 93 | 151 | 2.15e-14 | 70.9 |
| Msa1260880 | MtrunA17_Chr1g0172881 | 42.553 | 94 | 42 | 3 | 9 | 101 | 73 | 155 | 3.02e-14 | 70.1 |
| Msa1260880 | MtrunA17_Chr3g0114731 | 35.556 | 90 | 58 | 0 | 10 | 99 | 178 | 267 | 5.04e-14 | 73.6 |
| Msa1260880 | MtrunA17_Chr1g0171301 | 39.130 | 92 | 55 | 1 | 9 | 99 | 177 | 268 | 8.12e-14 | 72.4 |
| Msa1260880 | MtrunA17_Chr1g0186571 | 41.250 | 80 | 46 | 1 | 21 | 99 | 184 | 263 | 1.43e-12 | 68.6 |
| Msa1260880 | MtrunA17_Chr3g0129601 | 30.612 | 98 | 61 | 1 | 2 | 99 | 193 | 283 | 1.67e-12 | 68.6 |
| Msa1260880 | MtrunA17_Chr6g0463971 | 33.333 | 99 | 65 | 1 | 2 | 99 | 171 | 269 | 2.16e-12 | 68.2 |
| Msa1260880 | MtrunA17_Chr3g0129571 | 33.673 | 98 | 63 | 1 | 2 | 99 | 169 | 264 | 6.55e-12 | 66.6 |
| Msa1260880 | MtrunA17_Chr1g0184221 | 35.802 | 81 | 52 | 0 | 17 | 97 | 195 | 275 | 9.31e-12 | 66.2 |
| Msa1260880 | MtrunA17_Chr1g0186611 | 36.364 | 88 | 55 | 1 | 10 | 96 | 176 | 263 | 2.00e-11 | 65.1 |
| Msa1260880 | MtrunA17_Chr1g0186641 | 38.372 | 86 | 52 | 1 | 13 | 97 | 176 | 261 | 2.73e-11 | 64.7 |
| Msa1260880 | MtrunA17_Chr3g0129581 | 34.694 | 98 | 61 | 2 | 2 | 98 | 167 | 262 | 4.69e-11 | 63.9 |
| Msa1260880 | MtrunA17_Chr1g0186601 | 37.500 | 80 | 49 | 1 | 21 | 99 | 187 | 266 | 6.17e-11 | 63.5 |
| Msa1260880 | MtrunA17_Chr7g0224521 | 35.000 | 120 | 62 | 4 | 254 | 368 | 55 | 163 | 7.25e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260880 | AT2G13680.1 | 72.000 | 125 | 34 | 1 | 305 | 429 | 98 | 221 | 1.91e-48 | 178 |
| Msa1260880 | AT2G31960.1 | 58.824 | 119 | 46 | 3 | 312 | 429 | 102 | 218 | 1.64e-30 | 125 |
| Msa1260880 | AT2G31960.5 | 58.824 | 119 | 46 | 3 | 312 | 429 | 102 | 218 | 1.64e-30 | 125 |
| Msa1260880 | AT2G31960.3 | 58.824 | 119 | 46 | 3 | 312 | 429 | 102 | 218 | 1.64e-30 | 125 |
| Msa1260880 | AT2G31960.2 | 58.824 | 119 | 46 | 3 | 312 | 429 | 102 | 218 | 1.64e-30 | 125 |
| Msa1260880 | AT2G31960.4 | 58.824 | 119 | 46 | 3 | 312 | 429 | 102 | 218 | 1.74e-30 | 125 |
| Msa1260880 | AT3G23510.1 | 64.894 | 94 | 31 | 1 | 215 | 308 | 589 | 680 | 3.21e-29 | 121 |
| Msa1260880 | AT1G05570.4 | 56.303 | 119 | 49 | 3 | 312 | 429 | 102 | 218 | 6.22e-29 | 120 |
| Msa1260880 | AT1G05570.1 | 56.303 | 119 | 49 | 3 | 312 | 429 | 102 | 218 | 6.22e-29 | 120 |
| Msa1260880 | AT1G05570.3 | 56.303 | 119 | 49 | 3 | 312 | 429 | 102 | 218 | 6.22e-29 | 120 |
| Msa1260880 | AT1G05570.2 | 56.303 | 119 | 49 | 3 | 312 | 429 | 102 | 218 | 6.79e-29 | 120 |
| Msa1260880 | AT3G23530.1 | 72.973 | 74 | 20 | 0 | 233 | 306 | 605 | 678 | 2.37e-28 | 119 |
| Msa1260880 | AT3G23470.1 | 60.638 | 94 | 36 | 1 | 230 | 322 | 194 | 287 | 3.88e-28 | 116 |
| Msa1260880 | AT3G23470.3 | 60.638 | 94 | 36 | 1 | 230 | 322 | 221 | 314 | 3.90e-28 | 116 |
| Msa1260880 | AT3G23470.2 | 60.638 | 94 | 36 | 1 | 230 | 322 | 221 | 314 | 3.90e-28 | 116 |
| Msa1260880 | AT5G07050.1 | 64.634 | 82 | 28 | 1 | 19 | 99 | 195 | 276 | 6.37e-28 | 114 |
| Msa1260880 | AT5G13000.1 | 56.522 | 115 | 47 | 3 | 316 | 429 | 110 | 222 | 9.93e-28 | 117 |
| Msa1260880 | AT5G13000.2 | 56.522 | 115 | 47 | 3 | 316 | 429 | 110 | 222 | 1.08e-27 | 117 |
| Msa1260880 | AT3G56620.1 | 50.526 | 95 | 47 | 0 | 5 | 99 | 163 | 257 | 4.82e-27 | 112 |
| Msa1260880 | AT2G40900.1 | 56.790 | 81 | 35 | 0 | 19 | 99 | 176 | 256 | 1.07e-26 | 111 |
| Msa1260880 | AT3G23480.1 | 51.376 | 109 | 45 | 3 | 215 | 323 | 180 | 280 | 7.63e-24 | 103 |
| Msa1260880 | AT2G37460.1 | 47.253 | 91 | 47 | 1 | 10 | 99 | 174 | 264 | 4.20e-20 | 92.0 |
| Msa1260880 | AT1G21890.1 | 46.988 | 83 | 44 | 0 | 17 | 99 | 188 | 270 | 5.71e-20 | 91.7 |
| Msa1260880 | AT1G21890.2 | 46.988 | 83 | 44 | 0 | 17 | 99 | 188 | 270 | 6.13e-20 | 91.3 |
| Msa1260880 | AT4G08290.1 | 38.889 | 90 | 53 | 1 | 10 | 99 | 178 | 265 | 1.55e-18 | 87.4 |
| Msa1260880 | AT4G08290.2 | 40.476 | 84 | 48 | 1 | 10 | 93 | 178 | 259 | 6.03e-18 | 84.3 |
| Msa1260880 | AT2G37450.3 | 40.659 | 91 | 53 | 1 | 10 | 99 | 75 | 165 | 1.19e-17 | 83.2 |
| Msa1260880 | AT2G37450.1 | 40.659 | 91 | 53 | 1 | 10 | 99 | 108 | 198 | 1.42e-17 | 83.6 |
| Msa1260880 | AT3G23480.2 | 57.971 | 69 | 24 | 1 | 255 | 323 | 196 | 259 | 1.96e-17 | 84.7 |
| Msa1260880 | AT3G23480.3 | 57.971 | 69 | 24 | 1 | 255 | 323 | 159 | 222 | 2.04e-17 | 84.7 |
| Msa1260880 | AT2G37450.2 | 40.659 | 91 | 53 | 1 | 10 | 99 | 147 | 237 | 2.60e-17 | 83.2 |
| Msa1260880 | AT1G44800.1 | 37.113 | 97 | 60 | 1 | 3 | 99 | 166 | 261 | 8.43e-15 | 75.9 |
| Msa1260880 | AT3G59100.1 | 38.655 | 119 | 67 | 3 | 317 | 435 | 115 | 227 | 1.31e-14 | 77.0 |
| Msa1260880 | AT4G08300.1 | 36.082 | 97 | 59 | 1 | 1 | 97 | 169 | 262 | 6.44e-14 | 73.6 |
| Msa1260880 | AT2G39510.1 | 40.217 | 92 | 53 | 2 | 10 | 99 | 168 | 259 | 6.72e-14 | 73.2 |
| Msa1260880 | AT5G13670.1 | 37.778 | 90 | 55 | 1 | 17 | 105 | 179 | 268 | 2.51e-12 | 68.6 |
| Msa1260880 | AT5G64700.1 | 27.273 | 110 | 76 | 2 | 3 | 112 | 170 | 275 | 2.61e-12 | 68.6 |
| Msa1260880 | AT5G64700.2 | 30.435 | 92 | 63 | 1 | 3 | 94 | 170 | 260 | 7.02e-12 | 65.9 |
Find 94 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAACACCGGTGCGATTA+TGG | 0.156934 | 8_2:-63034974 | None:intergenic |
| GGTGAAAAGGATTGGGTTAA+AGG | 0.182504 | 8_2:+63033211 | Msa1260880:CDS |
| AAACATGAAATTCTTAATAT+TGG | 0.223077 | 8_2:+63035568 | Msa1260880:CDS |
| GGCTTCTTTCTTCATCCTTC+AGG | 0.230455 | 8_2:+63033267 | Msa1260880:CDS |
| AACACATGGTTATGTTATTA+TGG | 0.234407 | 8_2:+63034754 | Msa1260880:CDS |
| CGGTGTTGGTATTTGTCTTC+GGG | 0.243627 | 8_2:+63034986 | Msa1260880:CDS |
| GCTTATGGTGCTGGACATTA+AGG | 0.275054 | 8_2:+63033993 | Msa1260880:CDS |
| AGTTAAAGATGTTGGCCTTC+AGG | 0.299847 | 8_2:+63035693 | Msa1260880:CDS |
| AGTAGCAATTATGAGCAAAA+TGG | 0.337936 | 8_2:-63033236 | None:intergenic |
| AATGCTTCCATGCACAGTTT+TGG | 0.339026 | 8_2:-63035033 | None:intergenic |
| CCGGTGTTGGTATTTGTCTT+CGG | 0.339820 | 8_2:+63034985 | Msa1260880:CDS |
| TAATGCAGGCTGTGACATTA+AGG | 0.342668 | 8_2:+63033372 | Msa1260880:intron |
| CCTGAAAACACTACTGATTC+TGG | 0.344327 | 8_2:+63033190 | Msa1260880:CDS |
| AAGCATTGCCGGTTCGCTCT+TGG | 0.358450 | 8_2:+63035049 | Msa1260880:CDS |
| TCAGGCTGAAAGGGAGCTTA+TGG | 0.358478 | 8_2:+63033978 | Msa1260880:intron |
| CAACCAATGCTCCAAGCATT+TGG | 0.368276 | 8_2:-63033485 | None:intergenic |
| ACCAACACCGGTGCGATTAT+GGG | 0.369556 | 8_2:-63034973 | None:intergenic |
| CCACCAAAACACGCCCATTC+AGG | 0.370668 | 8_2:-63033754 | None:intergenic |
| ATTCTTCCTCTAGATGTTGT+TGG | 0.380178 | 8_2:+63036714 | Msa1260880:CDS |
| ACTGTGCATGGAAGCATTGC+CGG | 0.384006 | 8_2:+63035038 | Msa1260880:CDS |
| TCTGGTAAGCTTTACTGAGC+TGG | 0.385901 | 8_2:-63036454 | None:intergenic |
| CTGATTCTGGTGAAAAGGAT+TGG | 0.390193 | 8_2:+63033203 | Msa1260880:CDS |
| GACCTTCTCAGTCTTATTAA+CGG | 0.390702 | 8_2:-63036507 | None:intergenic |
| CACTACTGATTCTGGTGAAA+AGG | 0.391411 | 8_2:+63033198 | Msa1260880:CDS |
| AGCTCTTGACCAAGCGGATC+AGG | 0.395306 | 8_2:+63036346 | Msa1260880:CDS |
| AGCATTGCCGGTTCGCTCTT+GGG | 0.395926 | 8_2:+63035050 | Msa1260880:CDS |
| AGGCTGATGTTTCTGCGCTC+TGG | 0.397426 | 8_2:+63036857 | Msa1260880:CDS |
| TGCTGCAGACCGTGTGGTGC+AGG | 0.399756 | 8_2:-63034819 | None:intergenic |
| AATATTGTTGATAATAAGCC+TGG | 0.402502 | 8_2:-63036307 | None:intergenic |
| ATTGATGTTGTTAAAAGAAC+TGG | 0.416885 | 8_2:+63035613 | Msa1260880:CDS |
| AAGCCAAATGCTTGGAGCAT+TGG | 0.441831 | 8_2:+63033482 | Msa1260880:CDS |
| TGATTCTGGTGAAAAGGATT+GGG | 0.443945 | 8_2:+63033204 | Msa1260880:CDS |
| CTTAATATTGGATGTGGATG+GGG | 0.446753 | 8_2:+63035580 | Msa1260880:CDS |
| TTTGTGGTTTCAGGCTGAAA+GGG | 0.450838 | 8_2:+63033969 | Msa1260880:intron |
| CACCTCTTCAAACTGCATAA+TGG | 0.452591 | 8_2:-63036748 | None:intergenic |
| TTCTTAATATTGGATGTGGA+TGG | 0.457086 | 8_2:+63035578 | Msa1260880:CDS |
| CACAGCCATAGTGTGTTCCT+TGG | 0.460675 | 8_2:+63033418 | Msa1260880:CDS |
| TGTGCCCAAGGAACACACTA+TGG | 0.466969 | 8_2:-63033423 | None:intergenic |
| CTTTGTGGTTTCAGGCTGAA+AGG | 0.472506 | 8_2:+63033968 | Msa1260880:intron |
| CAAATGCTTGGAGCATTGGT+TGG | 0.475581 | 8_2:+63033486 | Msa1260880:CDS |
| CTGGTAAGCTTTACTGAGCT+GGG | 0.475750 | 8_2:-63036453 | None:intergenic |
| ACCTGTCTGCCTGATCCGCT+TGG | 0.476047 | 8_2:-63036355 | None:intergenic |
| GACAGATGCAAGGGAAATCC+AGG | 0.476856 | 8_2:+63036289 | Msa1260880:CDS |
| AGTAAAGCTTACCAGACTGC+TGG | 0.477870 | 8_2:+63036461 | Msa1260880:CDS |
| CAAAGAGCACCCCAGCAGTC+TGG | 0.484725 | 8_2:-63036472 | None:intergenic |
| TATGTTATTATGGAGCTTGT+GGG | 0.484872 | 8_2:+63034764 | Msa1260880:CDS |
| AAATGCTTGGAGCATTGGTT+GGG | 0.486794 | 8_2:+63033487 | Msa1260880:CDS |
| TCTTAATATTGGATGTGGAT+GGG | 0.489606 | 8_2:+63035579 | Msa1260880:CDS |
| TGCCGCTGCTAGAGATGTCC+AGG | 0.490949 | 8_2:+63036659 | Msa1260880:CDS |
| ATGAATGTGCATAAATCTCC+AGG | 0.503512 | 8_2:-63036686 | None:intergenic |
| CCCCATAATCGCACCGGTGT+TGG | 0.505280 | 8_2:+63034972 | Msa1260880:CDS |
| GAAATTCTTAATATTGGATG+TGG | 0.505380 | 8_2:+63035574 | Msa1260880:CDS |
| CCAACACCGGTGCGATTATG+GGG | 0.506954 | 8_2:-63034972 | None:intergenic |
| ACTACATCCCAAGAGCGAAC+CGG | 0.508073 | 8_2:-63035057 | None:intergenic |
| CTCCTCTGACAAAGTGATAC+CGG | 0.508711 | 8_2:-63035647 | None:intergenic |
| ACAGCCATAGTGTGTTCCTT+GGG | 0.511265 | 8_2:+63033419 | Msa1260880:CDS |
| GGACTAAGATTGTCTGCTAA+AGG | 0.513989 | 8_2:-63033863 | None:intergenic |
| TTTGTCTTCGGGGCAACAAA+GGG | 0.516278 | 8_2:+63034997 | Msa1260880:CDS |
| GTTTGCTAACGGTTTGCGAA+CGG | 0.522955 | 8_2:+63034788 | Msa1260880:CDS |
| GGACATTAAGGTTAAGCTGC+AGG | 0.531356 | 8_2:+63034005 | Msa1260880:CDS |
| TGAAAGGGAGCTTATGGTGC+TGG | 0.533555 | 8_2:+63033984 | Msa1260880:CDS |
| ACCAAGCGGATCAGGCAGAC+AGG | 0.533598 | 8_2:+63036354 | Msa1260880:CDS |
| TAGAGATGTCCAGGAAAACC+TGG | 0.542873 | 8_2:+63036668 | Msa1260880:CDS |
| GTAAAGCTTACCAGACTGCT+GGG | 0.544388 | 8_2:+63036462 | Msa1260880:CDS |
| GACCATTATGCAGTTTGAAG+AGG | 0.554194 | 8_2:+63036746 | Msa1260880:CDS |
| TGGAGCATAAGCCAAATGCT+TGG | 0.566635 | 8_2:+63033474 | Msa1260880:CDS |
| TGCAGAACCTCTCTACTGTG+TGG | 0.571470 | 8_2:+63034727 | Msa1260880:intron |
| TCTGCGCTCTGGAACACTCG+TGG | 0.576196 | 8_2:+63036868 | Msa1260880:CDS |
| ATATGATAGGATGAAGATGA+AGG | 0.579317 | 8_2:+63035403 | Msa1260880:intron |
| ATTTGTCTTCGGGGCAACAA+AGG | 0.580398 | 8_2:+63034996 | Msa1260880:CDS |
| AGCTTGTGGGAGTTTGCTAA+CGG | 0.583346 | 8_2:+63034777 | Msa1260880:CDS |
| AATTGATTGAAGTGTGCCCA+AGG | 0.589839 | 8_2:-63033435 | None:intergenic |
| TTATGTTATTATGGAGCTTG+TGG | 0.597968 | 8_2:+63034763 | Msa1260880:CDS |
| GGTCGAAGAAGTAGCTCCTG+AGG | 0.598235 | 8_2:+63036526 | Msa1260880:CDS |
| GTTCTTGCCAAAACTGTGCA+TGG | 0.603702 | 8_2:+63035026 | Msa1260880:CDS |
| GGTGTTGGTATTTGTCTTCG+GGG | 0.606562 | 8_2:+63034987 | Msa1260880:CDS |
| GCAGAACCTCTCTACTGTGT+GGG | 0.607160 | 8_2:+63034728 | Msa1260880:intron |
| TGCCGTTAATAAGACTGAGA+AGG | 0.613094 | 8_2:+63036505 | Msa1260880:CDS |
| GTGGGAAGAAGACAGATGCA+AGG | 0.623820 | 8_2:+63036279 | Msa1260880:intron |
| CACCGGTATCACTTTGTCAG+AGG | 0.623821 | 8_2:+63035645 | Msa1260880:CDS |
| TCAACAATAACAGATGCTGC+AGG | 0.626595 | 8_2:-63034876 | None:intergenic |
| TACTGTGTGGGTAAAACACA+TGG | 0.628290 | 8_2:+63034740 | Msa1260880:CDS |
| TGTCAGAGCTCTTGACCAAG+CGG | 0.629968 | 8_2:+63036340 | Msa1260880:CDS |
| TGGGAAGAAGACAGATGCAA+GGG | 0.630978 | 8_2:+63036280 | Msa1260880:CDS |
| TAACTTACAGCTCTCTCGAG+TGG | 0.631280 | 8_2:-63033884 | None:intergenic |
| GAAGCACCAACAACATCTAG+AGG | 0.638746 | 8_2:-63036720 | None:intergenic |
| TTCCTGGACATCTCTAGCAG+CGG | 0.640862 | 8_2:-63036661 | None:intergenic |
| CCGAAGACAAATACCAACAC+CGG | 0.651888 | 8_2:-63034985 | None:intergenic |
| GATGTGCAGCCTGCACCACA+CGG | 0.657685 | 8_2:+63034810 | Msa1260880:CDS |
| GACTGTTGCTGCAGACCGTG+TGG | 0.659348 | 8_2:-63034825 | None:intergenic |
| AGGGGAGAGACTTACAGCAT+AGG | 0.660913 | 8_2:-63033531 | None:intergenic |
| AGAACTGGTTGCAAATACAC+CGG | 0.676836 | 8_2:+63035628 | Msa1260880:CDS |
| CAACACCGGTGCGATTATGG+GGG | 0.679725 | 8_2:-63034971 | None:intergenic |
| TAAAGCTTACCAGACTGCTG+GGG | 0.683758 | 8_2:+63036463 | Msa1260880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTGTTATAAGTAAA+AGG | - | chr8_2:63034292-63034311 | None:intergenic | 10.0% |
| !! | TACAATATAGATTAAATAAA+AGG | + | chr8_2:63034532-63034551 | Msa1260880:intron | 10.0% |
| !! | ATAAAAAAATATATATTGCT+TGG | - | chr8_2:63035149-63035168 | None:intergenic | 10.0% |
| !!! | TCATCATTTTTATTAAAAAA+TGG | - | chr8_2:63035210-63035229 | None:intergenic | 10.0% |
| !! | TGTTTATAAAATTAAGAAAG+TGG | + | chr8_2:63033298-63033317 | Msa1260880:intron | 15.0% |
| !! | ACAAATAAAATGGAAAAAAA+AGG | - | chr8_2:63034117-63034136 | None:intergenic | 15.0% |
| !! | AAAACATAATATTAAAAGAG+AGG | - | chr8_2:63034141-63034160 | None:intergenic | 15.0% |
| !!! | TTTAAATACACTTATGTTTT+AGG | + | chr8_2:63034340-63034359 | Msa1260880:intron | 15.0% |
| !!! | TTCTTTTTCAAACTTTTTAT+GGG | - | chr8_2:63034389-63034408 | None:intergenic | 15.0% |
| !!! | ATTCTTTTTCAAACTTTTTA+TGG | - | chr8_2:63034390-63034409 | None:intergenic | 15.0% |
| !! | AATTTCATCCTTAAAAAAAA+AGG | + | chr8_2:63034464-63034483 | Msa1260880:intron | 15.0% |
| !!! | TTCTTTTACCTTTTTTTTTA+AGG | - | chr8_2:63034475-63034494 | None:intergenic | 15.0% |
| !! | AAACATGAAATTCTTAATAT+TGG | + | chr8_2:63035568-63035587 | Msa1260880:CDS | 15.0% |
| !!! | AAGTTAAAACTTTGATAACA+GGG | - | chr8_2:63033553-63033572 | None:intergenic | 20.0% |
| !! | ATTAAAAAAACTTGAAGTCT+CGG | + | chr8_2:63033785-63033804 | Msa1260880:intron | 20.0% |
| !! | AAAAGTTTGAAAAAGAATGT+AGG | + | chr8_2:63034392-63034411 | Msa1260880:intron | 20.0% |
| !! | GTAATGTTTACATGATATTT+AGG | - | chr8_2:63035325-63035344 | None:intergenic | 20.0% |
| !!! | TTTTTCCGAAATTATATGAT+AGG | + | chr8_2:63035390-63035409 | Msa1260880:intron | 20.0% |
| !! | TTCATCCTATCATATAATTT+CGG | - | chr8_2:63035398-63035417 | None:intergenic | 20.0% |
| !!! | ATTTTTCCTGAAATAAATCA+AGG | + | chr8_2:63035531-63035550 | Msa1260880:intron | 20.0% |
| !! | TTCATGACATAAAAAACTTT+AGG | - | chr8_2:63035732-63035751 | None:intergenic | 20.0% |
| !!! | ATACATTGAAATCTTTTTAC+AGG | + | chr8_2:63036429-63036448 | Msa1260880:intron | 20.0% |
| !! | AAAAAGTGAAATCATATGAA+TGG | - | chr8_2:63036559-63036578 | None:intergenic | 20.0% |
| !! | ACCATTCAAATATTTAAATC+TGG | + | chr8_2:63036610-63036629 | Msa1260880:intron | 20.0% |
| !! | TCCAGATTTAAATATTTGAA+TGG | - | chr8_2:63036614-63036633 | None:intergenic | 20.0% |
| !! | ATTCAAATATTTAAATCTGG+AGG | + | chr8_2:63036613-63036632 | Msa1260880:intron | 20.0% |
| !!! | TTTCTTTTGCTATTAGATTA+AGG | + | chr8_2:63036837-63036856 | Msa1260880:intron | 20.0% |
| !!! | TTTTCAGGTACATAATTTCT+AGG | - | chr8_2:63033178-63033197 | None:intergenic | 25.0% |
| !! | AGTTAAAACTTTGATAACAG+GGG | - | chr8_2:63033552-63033571 | None:intergenic | 25.0% |
| !! | CAAGTTAAAACTTTGATAAC+AGG | - | chr8_2:63033554-63033573 | None:intergenic | 25.0% |
| !!! | GTTATCAAAGTTTTAACTTG+CGG | + | chr8_2:63033554-63033573 | Msa1260880:intron | 25.0% |
| !! | AAAAAATATCGACTGCAATT+TGG | - | chr8_2:63033811-63033830 | None:intergenic | 25.0% |
| ! | ACCACAAAGTTAATAATGTT+GGG | - | chr8_2:63033957-63033976 | None:intergenic | 25.0% |
| ! | AACCACAAAGTTAATAATGT+TGG | - | chr8_2:63033958-63033977 | None:intergenic | 25.0% |
| ! | ATTATTAACTTTGTGGTTTC+AGG | + | chr8_2:63033960-63033979 | Msa1260880:intron | 25.0% |
| ! | AAAGAGAGGAACAAATAAAA+TGG | - | chr8_2:63034127-63034146 | None:intergenic | 25.0% |
| !! | ATCTTTTTGTCACTATAACT+TGG | + | chr8_2:63034235-63034254 | Msa1260880:intron | 25.0% |
| ! | GAAAAAGAATGTAGGTTTAT+TGG | + | chr8_2:63034400-63034419 | Msa1260880:intron | 25.0% |
| ! | AACACATGGTTATGTTATTA+TGG | + | chr8_2:63034754-63034773 | Msa1260880:CDS | 25.0% |
| ! | GAAATTCTTAATATTGGATG+TGG | + | chr8_2:63035574-63035593 | Msa1260880:CDS | 25.0% |
| !! | AGTTCTTTTAACAACATCAA+TGG | - | chr8_2:63035614-63035633 | None:intergenic | 25.0% |
| ! | ATTGATGTTGTTAAAAGAAC+TGG | + | chr8_2:63035613-63035632 | Msa1260880:CDS | 25.0% |
| ! | GAAAAAAGAGTTAAAGATGT+TGG | + | chr8_2:63035685-63035704 | Msa1260880:CDS | 25.0% |
| ! | TTCTTGATGTTATCAAATCA+TGG | + | chr8_2:63035876-63035895 | Msa1260880:intron | 25.0% |
| !!! | ACGCATGATATGTTTATTTT+TGG | + | chr8_2:63036118-63036137 | Msa1260880:intron | 25.0% |
| !!! | TTTGATAACCTTTTCTGTTT+TGG | + | chr8_2:63036232-63036251 | Msa1260880:intron | 25.0% |
| ! | GACACGAAAAGAAAAAAAAA+AGG | - | chr8_2:63036258-63036277 | None:intergenic | 25.0% |
| !!! | AATATTGTTGATAATAAGCC+TGG | - | chr8_2:63036310-63036329 | None:intergenic | 25.0% |
| AGTAGCAATTATGAGCAAAA+TGG | - | chr8_2:63033239-63033258 | None:intergenic | 30.0% | |
| !!! | TCATAATTGCTACTTTTGCT+TGG | + | chr8_2:63033245-63033264 | Msa1260880:CDS | 30.0% |
| !!! | CATAATTGCTACTTTTGCTT+GGG | + | chr8_2:63033246-63033265 | Msa1260880:CDS | 30.0% |
| ATAAACAGTTACATACCTGA+AGG | - | chr8_2:63033285-63033304 | None:intergenic | 30.0% | |
| ! | TTTTTGTGTGTGATTAATGC+AGG | + | chr8_2:63033358-63033377 | Msa1260880:intron | 30.0% |
| ! | AATTGCTGTGACTTTTGTTA+TGG | + | chr8_2:63033454-63033473 | Msa1260880:CDS | 30.0% |
| !!! | TGTTGGCTGGTTTATTATTT+TGG | - | chr8_2:63033645-63033664 | None:intergenic | 30.0% |
| ! | GTTTCTGTCACTAATTTTGT+TGG | - | chr8_2:63033662-63033681 | None:intergenic | 30.0% |
| !!! | CTTTGTTTTATCACAGGATT+TGG | + | chr8_2:63033696-63033715 | Msa1260880:intron | 30.0% |
| CACAAAGTTAATAATGTTGG+GGG | - | chr8_2:63033955-63033974 | None:intergenic | 30.0% | |
| CCACAAAGTTAATAATGTTG+GGG | - | chr8_2:63033956-63033975 | None:intergenic | 30.0% | |
| TTATGTTATTATGGAGCTTG+TGG | + | chr8_2:63034763-63034782 | Msa1260880:CDS | 30.0% | |
| TATGTTATTATGGAGCTTGT+GGG | + | chr8_2:63034764-63034783 | Msa1260880:CDS | 30.0% | |
| ! | CAACAACCATGACAATTTTA+AGG | + | chr8_2:63035097-63035116 | Msa1260880:intron | 30.0% |
| ATTTCATGTACTATGTTTGC+AGG | + | chr8_2:63035238-63035257 | Msa1260880:intron | 30.0% | |
| ATATGATAGGATGAAGATGA+AGG | + | chr8_2:63035403-63035422 | Msa1260880:intron | 30.0% | |
| !! | TTCTAGCCTTGATTTATTTC+AGG | - | chr8_2:63035540-63035559 | None:intergenic | 30.0% |
| TTCTTAATATTGGATGTGGA+TGG | + | chr8_2:63035578-63035597 | Msa1260880:CDS | 30.0% | |
| TCTTAATATTGGATGTGGAT+GGG | + | chr8_2:63035579-63035598 | Msa1260880:CDS | 30.0% | |
| CACAGTAACAAAGATTATAG+AGG | - | chr8_2:63035834-63035853 | None:intergenic | 30.0% | |
| AAATCATGGTTACAACTTAC+AGG | + | chr8_2:63035890-63035909 | Msa1260880:intron | 30.0% | |
| ! | AAAGTTTTTCTTACCACGTT+AGG | + | chr8_2:63035921-63035940 | Msa1260880:intron | 30.0% |
| TAATGCAGTATGACAGATTA+AGG | - | chr8_2:63035964-63035983 | None:intergenic | 30.0% | |
| ! | GTTATATAGTGATTAGCTGT+TGG | + | chr8_2:63036014-63036033 | Msa1260880:intron | 30.0% |
| AAAAAAGGCCAAAACAGAAA+AGG | - | chr8_2:63036243-63036262 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTTTTCGTGTCAG+TGG | + | chr8_2:63036260-63036279 | Msa1260880:intron | 30.0% |
| !!! | TTTTTTCTTTTCGTGTCAGT+GGG | + | chr8_2:63036261-63036280 | Msa1260880:intron | 30.0% |
| TGATTCTGGTGAAAAGGATT+GGG | + | chr8_2:63033204-63033223 | Msa1260880:CDS | 35.0% | |
| !!! | CTGGTTTATTATTTTGGCAG+TGG | - | chr8_2:63033639-63033658 | None:intergenic | 35.0% |
| !!! | TCCTTGCTTTGTTTTATCAC+AGG | + | chr8_2:63033690-63033709 | Msa1260880:intron | 35.0% |
| TCCTGTGATAAAACAAAGCA+AGG | - | chr8_2:63033694-63033713 | None:intergenic | 35.0% | |
| !!! | TCATGTTTTTTCGTCCTGAA+TGG | + | chr8_2:63033740-63033759 | Msa1260880:CDS | 35.0% |
| !!! | CATGTTTTTTCGTCCTGAAT+GGG | + | chr8_2:63033741-63033760 | Msa1260880:CDS | 35.0% |
| TGTGTGTCAATTGATGCAAA+TGG | + | chr8_2:63033929-63033948 | Msa1260880:intron | 35.0% | |
| CCCCAACATTATTAACTTTG+TGG | + | chr8_2:63033953-63033972 | Msa1260880:intron | 35.0% | |
| TGGTACACATAATATCACGT+AGG | + | chr8_2:63034420-63034439 | Msa1260880:intron | 35.0% | |
| TCGCAATTTACACAATCAGT+TGG | - | chr8_2:63034567-63034586 | None:intergenic | 35.0% | |
| GATTGTGTAAATTGCGATTC+CGG | + | chr8_2:63034570-63034589 | Msa1260880:intron | 35.0% | |
| TTCTGCTAATACAGTTGTGA+AGG | + | chr8_2:63034689-63034708 | Msa1260880:intron | 35.0% | |
| !!! | TTGGGATGTAGTTTAGCTTT+TGG | + | chr8_2:63035068-63035087 | Msa1260880:intron | 35.0% |
| TCTCTTCAGATTGAAAGAGT+TGG | + | chr8_2:63035454-63035473 | Msa1260880:intron | 35.0% | |
| CTTAATATTGGATGTGGATG+GGG | + | chr8_2:63035580-63035599 | Msa1260880:CDS | 35.0% | |
| ! | GGTTGTTGATTAATACCTGA+AGG | - | chr8_2:63035711-63035730 | None:intergenic | 35.0% |
| TTTCTTACCACGTTAGGTTT+AGG | + | chr8_2:63035927-63035946 | Msa1260880:intron | 35.0% | |
| ATGACAGATTAAGGCTCATA+TGG | - | chr8_2:63035955-63035974 | None:intergenic | 35.0% | |
| TTGGTAAAGCTGTGCTATAA+AGG | + | chr8_2:63036033-63036052 | Msa1260880:intron | 35.0% | |
| TGGTAAAGCTGTGCTATAAA+GGG | + | chr8_2:63036034-63036053 | Msa1260880:intron | 35.0% | |
| AGACGCACTTCATAGAATTA+TGG | + | chr8_2:63036145-63036164 | Msa1260880:intron | 35.0% | |
| GACGCACTTCATAGAATTAT+GGG | + | chr8_2:63036146-63036165 | Msa1260880:intron | 35.0% | |
| TAGAATTATGGGACCAAGAT+AGG | + | chr8_2:63036157-63036176 | Msa1260880:intron | 35.0% | |
| AGAATTATGGGACCAAGATA+GGG | + | chr8_2:63036158-63036177 | Msa1260880:intron | 35.0% | |
| CACTTAGTATTGCTGAATTG+AGG | + | chr8_2:63036196-63036215 | Msa1260880:intron | 35.0% | |
| TAGAATCTGCTACAACACAT+AGG | - | chr8_2:63036410-63036429 | None:intergenic | 35.0% | |
| !! | GACCTTCTCAGTCTTATTAA+CGG | - | chr8_2:63036510-63036529 | None:intergenic | 35.0% |
| ATGAATGTGCATAAATCTCC+AGG | - | chr8_2:63036689-63036708 | None:intergenic | 35.0% | |
| ATTCTTCCTCTAGATGTTGT+TGG | + | chr8_2:63036714-63036733 | Msa1260880:CDS | 35.0% | |
| TGTCAAGTTAAAGAAACGCA+AGG | - | chr8_2:63036797-63036816 | None:intergenic | 35.0% | |
| ! | CCAGAATCAGTAGTGTTTTC+AGG | - | chr8_2:63033193-63033212 | None:intergenic | 40.0% |
| !! | CCTGAAAACACTACTGATTC+TGG | + | chr8_2:63033190-63033209 | Msa1260880:CDS | 40.0% |
| !! | CACTACTGATTCTGGTGAAA+AGG | + | chr8_2:63033198-63033217 | Msa1260880:CDS | 40.0% |
| CTGATTCTGGTGAAAAGGAT+TGG | + | chr8_2:63033203-63033222 | Msa1260880:CDS | 40.0% | |
| GGTGAAAAGGATTGGGTTAA+AGG | + | chr8_2:63033211-63033230 | Msa1260880:CDS | 40.0% | |
| TAATGCAGGCTGTGACATTA+AGG | + | chr8_2:63033372-63033391 | Msa1260880:intron | 40.0% | |
| AATTGATTGAAGTGTGCCCA+AGG | - | chr8_2:63033438-63033457 | None:intergenic | 40.0% | |
| !! | AAATGCTTGGAGCATTGGTT+GGG | + | chr8_2:63033487-63033506 | Msa1260880:CDS | 40.0% |
| !!! | ATTATTTTGGCAGTGGCCTT+CGG | - | chr8_2:63033632-63033651 | None:intergenic | 40.0% |
| ! | CTGTCACTAATTTTGTTGGC+TGG | - | chr8_2:63033658-63033677 | None:intergenic | 40.0% |
| TGGTCAACACAATAGGGTTT+CGG | - | chr8_2:63033835-63033854 | None:intergenic | 40.0% | |
| GGACTAAGATTGTCTGCTAA+AGG | - | chr8_2:63033866-63033885 | None:intergenic | 40.0% | |
| ACACACAAGTAGCACTATCT+CGG | - | chr8_2:63033916-63033935 | None:intergenic | 40.0% | |
| TTTGTGGTTTCAGGCTGAAA+GGG | + | chr8_2:63033969-63033988 | Msa1260880:intron | 40.0% | |
| ACAGATGAGCAAAGTCTTCA+TGG | - | chr8_2:63034596-63034615 | None:intergenic | 40.0% | |
| ! | GTCCTTTTGCGATTCAAGTA+TGG | + | chr8_2:63034625-63034644 | Msa1260880:intron | 40.0% |
| GTCCATACTTGAATCGCAAA+AGG | - | chr8_2:63034630-63034649 | None:intergenic | 40.0% | |
| TTGCGATTCAAGTATGGACA+AGG | + | chr8_2:63034631-63034650 | Msa1260880:intron | 40.0% | |
| TGCGATTCAAGTATGGACAA+GGG | + | chr8_2:63034632-63034651 | Msa1260880:intron | 40.0% | |
| TACTGTGTGGGTAAAACACA+TGG | + | chr8_2:63034740-63034759 | Msa1260880:CDS | 40.0% | |
| TCAACAATAACAGATGCTGC+AGG | - | chr8_2:63034879-63034898 | None:intergenic | 40.0% | |
| ATTTGAATCAACCACTCGCA+GGG | - | chr8_2:63034926-63034945 | None:intergenic | 40.0% | |
| ! | AATGCTTCCATGCACAGTTT+TGG | - | chr8_2:63035036-63035055 | None:intergenic | 40.0% |
| AGAACTGGTTGCAAATACAC+CGG | + | chr8_2:63035628-63035647 | Msa1260880:CDS | 40.0% | |
| !! | AGTTAAAGATGTTGGCCTTC+AGG | + | chr8_2:63035693-63035712 | Msa1260880:CDS | 40.0% |
| TATGGATCCTAAACCTAACG+TGG | - | chr8_2:63035937-63035956 | None:intergenic | 40.0% | |
| GAATTATGGGACCAAGATAG+GGG | + | chr8_2:63036159-63036178 | Msa1260880:intron | 40.0% | |
| ATTACCAGAATCCCCTATCT+TGG | - | chr8_2:63036173-63036192 | None:intergenic | 40.0% | |
| TGCCGTTAATAAGACTGAGA+AGG | + | chr8_2:63036505-63036524 | Msa1260880:CDS | 40.0% | |
| TATGAATGGAGACTAACCTC+AGG | - | chr8_2:63036545-63036564 | None:intergenic | 40.0% | |
| ! | CATAAATCTCCAGGTTTTCC+TGG | - | chr8_2:63036680-63036699 | None:intergenic | 40.0% |
| GACCATTATGCAGTTTGAAG+AGG | + | chr8_2:63036746-63036765 | Msa1260880:CDS | 40.0% | |
| CACCTCTTCAAACTGCATAA+TGG | - | chr8_2:63036751-63036770 | None:intergenic | 40.0% | |
| ! | ACACTCGTGGTTTTTGTTAC+AGG | + | chr8_2:63036881-63036900 | Msa1260880:CDS | 40.0% |
| GGCTTCTTTCTTCATCCTTC+AGG | + | chr8_2:63033267-63033286 | Msa1260880:CDS | 45.0% | |
| ACAGCCATAGTGTGTTCCTT+GGG | + | chr8_2:63033419-63033438 | Msa1260880:CDS | 45.0% | |
| TGGAGCATAAGCCAAATGCT+TGG | + | chr8_2:63033474-63033493 | Msa1260880:CDS | 45.0% | |
| AAGCCAAATGCTTGGAGCAT+TGG | + | chr8_2:63033482-63033501 | Msa1260880:CDS | 45.0% | |
| CAACCAATGCTCCAAGCATT+TGG | - | chr8_2:63033488-63033507 | None:intergenic | 45.0% | |
| !! | CAAATGCTTGGAGCATTGGT+TGG | + | chr8_2:63033486-63033505 | Msa1260880:CDS | 45.0% |
| TCATAGTCAAATGCGACCGA+AGG | + | chr8_2:63033613-63033632 | Msa1260880:intron | 45.0% | |
| GGTCAACACAATAGGGTTTC+GGG | - | chr8_2:63033834-63033853 | None:intergenic | 45.0% | |
| CCTTGCTGGTCAACACAATA+GGG | - | chr8_2:63033841-63033860 | None:intergenic | 45.0% | |
| TCCTTGCTGGTCAACACAAT+AGG | - | chr8_2:63033842-63033861 | None:intergenic | 45.0% | |
| TAACTTACAGCTCTCTCGAG+TGG | - | chr8_2:63033887-63033906 | None:intergenic | 45.0% | |
| CACACAAGTAGCACTATCTC+GGG | - | chr8_2:63033915-63033934 | None:intergenic | 45.0% | |
| CTTTGTGGTTTCAGGCTGAA+AGG | + | chr8_2:63033968-63033987 | Msa1260880:intron | 45.0% | |
| ! | GCTTATGGTGCTGGACATTA+AGG | + | chr8_2:63033993-63034012 | Msa1260880:CDS | 45.0% |
| GGACATTAAGGTTAAGCTGC+AGG | + | chr8_2:63034005-63034024 | Msa1260880:CDS | 45.0% | |
| AACACACACACACACACACA+GGG | - | chr8_2:63034063-63034082 | None:intergenic | 45.0% | |
| AAACACACACACACACACAC+AGG | - | chr8_2:63034064-63034083 | None:intergenic | 45.0% | |
| ATGAGCAAAGTCTTCATGGC+CGG | - | chr8_2:63034592-63034611 | None:intergenic | 45.0% | |
| ATTCAAGTATGGACAAGGGC+TGG | + | chr8_2:63034636-63034655 | Msa1260880:intron | 45.0% | |
| ! | GTTTTACCCACACAGTAGAG+AGG | - | chr8_2:63034737-63034756 | None:intergenic | 45.0% |
| !! | AGCTTGTGGGAGTTTGCTAA+CGG | + | chr8_2:63034777-63034796 | Msa1260880:CDS | 45.0% |
| ! | GTTTGCTAACGGTTTGCGAA+CGG | + | chr8_2:63034788-63034807 | Msa1260880:CDS | 45.0% |
| TTGAACCGCATCAGATCAAG+TGG | + | chr8_2:63034895-63034914 | Msa1260880:intron | 45.0% | |
| TTTGAATCAACCACTCGCAG+GGG | - | chr8_2:63034925-63034944 | None:intergenic | 45.0% | |
| CATTTGAATCAACCACTCGC+AGG | - | chr8_2:63034927-63034946 | None:intergenic | 45.0% | |
| CCGAAGACAAATACCAACAC+CGG | - | chr8_2:63034988-63035007 | None:intergenic | 45.0% | |
| !! | CCGGTGTTGGTATTTGTCTT+CGG | + | chr8_2:63034985-63035004 | Msa1260880:CDS | 45.0% |
| !! | CGGTGTTGGTATTTGTCTTC+GGG | + | chr8_2:63034986-63035005 | Msa1260880:CDS | 45.0% |
| !! | GGTGTTGGTATTTGTCTTCG+GGG | + | chr8_2:63034987-63035006 | Msa1260880:CDS | 45.0% |
| ATTTGTCTTCGGGGCAACAA+AGG | + | chr8_2:63034996-63035015 | Msa1260880:CDS | 45.0% | |
| TTTGTCTTCGGGGCAACAAA+GGG | + | chr8_2:63034997-63035016 | Msa1260880:CDS | 45.0% | |
| GTTCTTGCCAAAACTGTGCA+TGG | + | chr8_2:63035026-63035045 | Msa1260880:CDS | 45.0% | |
| GGGAGGCCTTAAAATTGTCA+TGG | - | chr8_2:63035106-63035125 | None:intergenic | 45.0% | |
| TTGCCCACCTGCACTATTAT+GGG | - | chr8_2:63035126-63035145 | None:intergenic | 45.0% | |
| TGTTTGCAGGACAATAGCAG+TGG | + | chr8_2:63035251-63035270 | Msa1260880:intron | 45.0% | |
| GTTTGCAGGACAATAGCAGT+GGG | + | chr8_2:63035252-63035271 | Msa1260880:intron | 45.0% | |
| CAATAGCAGTGGGCATTAGA+TGG | + | chr8_2:63035262-63035281 | Msa1260880:intron | 45.0% | |
| TGGGCATTAGATGGTAGTCA+AGG | + | chr8_2:63035271-63035290 | Msa1260880:intron | 45.0% | |
| CTCCTCTGACAAAGTGATAC+CGG | - | chr8_2:63035650-63035669 | None:intergenic | 45.0% | |
| TGGGAAGAAGACAGATGCAA+GGG | + | chr8_2:63036280-63036299 | Msa1260880:CDS | 45.0% | |
| CTGGTAAGCTTTACTGAGCT+GGG | - | chr8_2:63036456-63036475 | None:intergenic | 45.0% | |
| TCTGGTAAGCTTTACTGAGC+TGG | - | chr8_2:63036457-63036476 | None:intergenic | 45.0% | |
| AGTAAAGCTTACCAGACTGC+TGG | + | chr8_2:63036461-63036480 | Msa1260880:CDS | 45.0% | |
| GTAAAGCTTACCAGACTGCT+GGG | + | chr8_2:63036462-63036481 | Msa1260880:CDS | 45.0% | |
| TAAAGCTTACCAGACTGCTG+GGG | + | chr8_2:63036463-63036482 | Msa1260880:CDS | 45.0% | |
| TAGAGATGTCCAGGAAAACC+TGG | + | chr8_2:63036668-63036687 | Msa1260880:CDS | 45.0% | |
| ! | GAAGCACCAACAACATCTAG+AGG | - | chr8_2:63036723-63036742 | None:intergenic | 45.0% |
| CACAGCCATAGTGTGTTCCT+TGG | + | chr8_2:63033418-63033437 | Msa1260880:CDS | 50.0% | |
| TGTGCCCAAGGAACACACTA+TGG | - | chr8_2:63033426-63033445 | None:intergenic | 50.0% | |
| AGGGGAGAGACTTACAGCAT+AGG | - | chr8_2:63033534-63033553 | None:intergenic | 50.0% | |
| ! | CCCTATTGTGTTGACCAGCA+AGG | + | chr8_2:63033838-63033857 | Msa1260880:intron | 50.0% |
| GTCTGCTAAAGGATCCTTGC+TGG | - | chr8_2:63033855-63033874 | None:intergenic | 50.0% | |
| TCAGGCTGAAAGGGAGCTTA+TGG | + | chr8_2:63033978-63033997 | Msa1260880:intron | 50.0% | |
| TGAAAGGGAGCTTATGGTGC+TGG | + | chr8_2:63033984-63034003 | Msa1260880:CDS | 50.0% | |
| ACACACACACACAGGGAAGA+TGG | - | chr8_2:63034056-63034075 | None:intergenic | 50.0% | |
| !! | TATGGACAAGGGCTGGTTTG+TGG | + | chr8_2:63034643-63034662 | Msa1260880:intron | 50.0% |
| TGCAGAACCTCTCTACTGTG+TGG | + | chr8_2:63034727-63034746 | Msa1260880:intron | 50.0% | |
| GCAGAACCTCTCTACTGTGT+GGG | + | chr8_2:63034728-63034747 | Msa1260880:intron | 50.0% | |
| TTGAATCAACCACTCGCAGG+GGG | - | chr8_2:63034924-63034943 | None:intergenic | 50.0% | |
| TCTATCCCCCATAATCGCAC+CGG | + | chr8_2:63034966-63034985 | Msa1260880:CDS | 50.0% | |
| ACCAACACCGGTGCGATTAT+GGG | - | chr8_2:63034976-63034995 | None:intergenic | 50.0% | |
| TACCAACACCGGTGCGATTA+TGG | - | chr8_2:63034977-63034996 | None:intergenic | 50.0% | |
| !! | ACTGTGCATGGAAGCATTGC+CGG | + | chr8_2:63035038-63035057 | Msa1260880:CDS | 50.0% |
| ACTACATCCCAAGAGCGAAC+CGG | - | chr8_2:63035060-63035079 | None:intergenic | 50.0% | |
| AAGGCCTCCCATAATAGTGC+AGG | + | chr8_2:63035116-63035135 | Msa1260880:intron | 50.0% | |
| CCTCCCATAATAGTGCAGGT+GGG | + | chr8_2:63035120-63035139 | Msa1260880:intron | 50.0% | |
| GTTGCCCACCTGCACTATTA+TGG | - | chr8_2:63035127-63035146 | None:intergenic | 50.0% | |
| CACCGGTATCACTTTGTCAG+AGG | + | chr8_2:63035645-63035664 | Msa1260880:CDS | 50.0% | |
| GTGGGAAGAAGACAGATGCA+AGG | + | chr8_2:63036279-63036298 | Msa1260880:intron | 50.0% | |
| GACAGATGCAAGGGAAATCC+AGG | + | chr8_2:63036289-63036308 | Msa1260880:CDS | 50.0% | |
| TGTCAGAGCTCTTGACCAAG+CGG | + | chr8_2:63036340-63036359 | Msa1260880:CDS | 50.0% | |
| TTCCTGGACATCTCTAGCAG+CGG | - | chr8_2:63036664-63036683 | None:intergenic | 50.0% | |
| ! | CGTCCTGAATGGGCGTGTTT+TGG | + | chr8_2:63033751-63033770 | Msa1260880:intron | 55.0% |
| CCACCAAAACACGCCCATTC+AGG | - | chr8_2:63033757-63033776 | None:intergenic | 55.0% | |
| !! | CCTGAATGGGCGTGTTTTGG+TGG | + | chr8_2:63033754-63033773 | Msa1260880:intron | 55.0% |
| ! | GGCTGCCACTTGATCTGATG+CGG | - | chr8_2:63034903-63034922 | None:intergenic | 55.0% |
| CAACACCGGTGCGATTATGG+GGG | - | chr8_2:63034974-63034993 | None:intergenic | 55.0% | |
| CCAACACCGGTGCGATTATG+GGG | - | chr8_2:63034975-63034994 | None:intergenic | 55.0% | |
| !! | AAGCATTGCCGGTTCGCTCT+TGG | + | chr8_2:63035049-63035068 | Msa1260880:CDS | 55.0% |
| !! | AGCATTGCCGGTTCGCTCTT+GGG | + | chr8_2:63035050-63035069 | Msa1260880:CDS | 55.0% |
| GCCTCCCATAATAGTGCAGG+TGG | + | chr8_2:63035119-63035138 | Msa1260880:intron | 55.0% | |
| CCCACCTGCACTATTATGGG+AGG | - | chr8_2:63035123-63035142 | None:intergenic | 55.0% | |
| GGGACCAAGATAGGGGATTC+TGG | + | chr8_2:63036166-63036185 | Msa1260880:intron | 55.0% | |
| AGCTCTTGACCAAGCGGATC+AGG | + | chr8_2:63036346-63036365 | Msa1260880:CDS | 55.0% | |
| GGTCGAAGAAGTAGCTCCTG+AGG | + | chr8_2:63036526-63036545 | Msa1260880:CDS | 55.0% | |
| ! | AGGCTGATGTTTCTGCGCTC+TGG | + | chr8_2:63036857-63036876 | Msa1260880:CDS | 55.0% |
| GATGTGCAGCCTGCACCACA+CGG | + | chr8_2:63034810-63034829 | Msa1260880:CDS | 60.0% | |
| GACTGTTGCTGCAGACCGTG+TGG | - | chr8_2:63034828-63034847 | None:intergenic | 60.0% | |
| ! | CCCCATAATCGCACCGGTGT+TGG | + | chr8_2:63034972-63034991 | Msa1260880:CDS | 60.0% |
| ACCAAGCGGATCAGGCAGAC+AGG | + | chr8_2:63036354-63036373 | Msa1260880:CDS | 60.0% | |
| ACCTGTCTGCCTGATCCGCT+TGG | - | chr8_2:63036358-63036377 | None:intergenic | 60.0% | |
| !! | CAAAGAGCACCCCAGCAGTC+TGG | - | chr8_2:63036475-63036494 | None:intergenic | 60.0% |
| TGCCGCTGCTAGAGATGTCC+AGG | + | chr8_2:63036659-63036678 | Msa1260880:CDS | 60.0% | |
| !! | TCTGCGCTCTGGAACACTCG+TGG | + | chr8_2:63036868-63036887 | Msa1260880:CDS | 60.0% |
| TGCTGCAGACCGTGTGGTGC+AGG | - | chr8_2:63034822-63034841 | None:intergenic | 65.0% | |
| AAGTGGCAGCCCCCTGCGAG+TGG | + | chr8_2:63034912-63034931 | Msa1260880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 63033166 | 63036927 | 63033166 | ID=Msa1260880;Name=Msa1260880 |
| chr8_2 | mRNA | 63033166 | 63036927 | 63033166 | ID=Msa1260880-mRNA-1;Parent=Msa1260880;Name=Msa1260880-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.46|0.28|0.92|1|1|14|0|440 |
| chr8_2 | exon | 63033166 | 63033288 | 63033166 | ID=Msa1260880-mRNA-1:exon:20114;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63033380 | 63033538 | 63033380 | ID=Msa1260880-mRNA-1:exon:20115;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63033712 | 63033764 | 63033712 | ID=Msa1260880-mRNA-1:exon:20116;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63033856 | 63033898 | 63033856 | ID=Msa1260880-mRNA-1:exon:20117;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63033982 | 63034026 | 63033982 | ID=Msa1260880-mRNA-1:exon:20118;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63034732 | 63034887 | 63034732 | ID=Msa1260880-mRNA-1:exon:20119;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63034961 | 63035074 | 63034961 | ID=Msa1260880-mRNA-1:exon:20120;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63035412 | 63035471 | 63035412 | ID=Msa1260880-mRNA-1:exon:20121;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63035553 | 63035714 | 63035553 | ID=Msa1260880-mRNA-1:exon:20122;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63035912 | 63035937 | 63035912 | ID=Msa1260880-mRNA-1:exon:20123;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63036280 | 63036375 | 63036280 | ID=Msa1260880-mRNA-1:exon:20124;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63036451 | 63036547 | 63036451 | ID=Msa1260880-mRNA-1:exon:20125;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63036654 | 63036767 | 63036654 | ID=Msa1260880-mRNA-1:exon:20126;Parent=Msa1260880-mRNA-1 |
| chr8_2 | exon | 63036853 | 63036927 | 63036853 | ID=Msa1260880-mRNA-1:exon:20127;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63033166 | 63033288 | 63033166 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63033380 | 63033538 | 63033380 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63033712 | 63033764 | 63033712 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63033856 | 63033898 | 63033856 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63033982 | 63034026 | 63033982 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63034732 | 63034887 | 63034732 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63034961 | 63035074 | 63034961 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63035412 | 63035471 | 63035412 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63035553 | 63035714 | 63035553 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63035912 | 63035937 | 63035912 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63036280 | 63036375 | 63036280 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63036451 | 63036547 | 63036451 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63036654 | 63036767 | 63036654 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| chr8_2 | CDS | 63036853 | 63036927 | 63036853 | ID=Msa1260880-mRNA-1:cds;Parent=Msa1260880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
