AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0424320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424320 MtrunA17_Chr3g0110041 57.317 82 30 1 65 146 228 304 3.48e-20 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 53 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTGTTCTGTGCAATTTC+AGG 0.150585 3_2:-74522259 Msa0424320:intron
TAACTGCCTGTCATGCTTTA+AGG 0.171946 3_2:-74520459 Msa0424320:three_prime_UTR
GAGAGTGAGGGATGGAGTTT+AGG 0.184546 3_2:+74522364 None:intergenic
AGAAGTTAATGACCAAATTA+AGG 0.238374 3_2:-74519927 Msa0424320:three_prime_UTR
TAAAGTTGTTACCCTTAATT+TGG 0.242194 3_2:+74519915 None:intergenic
TATACCTTCAAGTTATTATA+AGG 0.251210 3_2:-74519529 Msa0424320:three_prime_UTR
AGAGTGAGGGATGGAGTTTA+GGG 0.276590 3_2:+74522365 None:intergenic
ATATGCACTGCTTGGATTAT+AGG 0.290352 3_2:-74520086 Msa0424320:intron
TGGTAGTGGGCATGCGTTAT+GGG 0.313102 3_2:-74520126 Msa0424320:three_prime_UTR
TTATTATAAGGTTAACCTAT+TGG 0.340148 3_2:-74519517 Msa0424320:three_prime_UTR
TTGGTAGTGGGCATGCGTTA+TGG 0.344239 3_2:-74520127 Msa0424320:three_prime_UTR
AGATAGTTATATGTTTCTAA+TGG 0.350766 3_2:-74519466 Msa0424320:three_prime_UTR
GTGGGCATGCGTTATGGGGC+TGG 0.368171 3_2:-74520121 Msa0424320:three_prime_UTR
CAGTTACGACATATTTGTTA+TGG 0.370458 3_2:+74520476 None:intergenic
TTCTGGAACTGGCATGTGGC+AGG 0.372920 3_2:-74521073 Msa0424320:CDS
GACAGTTATGAAAATGTTGA+AGG 0.401363 3_2:-74520713 Msa0424320:CDS
GGCATGGAATTTATTGGTAG+TGG 0.417211 3_2:-74520140 Msa0424320:three_prime_UTR
AGTATTATCAATCATCCAAT+AGG 0.418768 3_2:+74519502 None:intergenic
TTAGACAAATCAACAATTGT+TGG 0.426097 3_2:-74519634 Msa0424320:three_prime_UTR
GTGCAACACATTTCTTTGAC+GGG 0.426110 3_2:+74521031 None:intergenic
ACTGAGAAGAAGAAAGCAAC+TGG 0.434665 3_2:+74522308 None:intergenic
TAGCGAGCTTGTTTCTCTAC+TGG 0.440208 3_2:-74520176 Msa0424320:three_prime_UTR
CTGGAACTGGCATGTGGCAG+GGG 0.441810 3_2:-74521071 Msa0424320:CDS
GAAGTTAATGACCAAATTAA+GGG 0.448734 3_2:-74519926 Msa0424320:intron
CTAATAACTTCCTCGAGTCT+TGG 0.470165 3_2:+74519583 None:intergenic
TTAACCTTATAATAACTTGA+AGG 0.481855 3_2:+74519525 None:intergenic
GGTGCAACACATTTCTTTGA+CGG 0.486278 3_2:+74521030 None:intergenic
TCTGGAACTGGCATGTGGCA+GGG 0.496497 3_2:-74521072 Msa0424320:CDS
GAACTATCCTCATGCTCCGC+TGG 0.496783 3_2:-74520434 Msa0424320:intron
GTTCTTCCTTAAAGCATGAC+AGG 0.503212 3_2:+74520453 None:intergenic
GGAAGATGAGTGCCTTCAAA+AGG 0.520646 3_2:-74523401 Msa0424320:intron
GCATGGAATTTATTGGTAGT+GGG 0.522746 3_2:-74520139 Msa0424320:three_prime_UTR
TGCGTTATGGGGCTGGTGTG+AGG 0.523738 3_2:-74520114 Msa0424320:three_prime_UTR
ATTGGTTGAGATATCCTGCC+GGG 0.529002 3_2:-74521005 Msa0424320:intron
TATGGGGCTGGTGTGAGGCA+TGG 0.529105 3_2:-74520109 Msa0424320:three_prime_UTR
TGAAATGGAGGCATTTGTGC+GGG 0.529259 3_2:-74523422 None:intergenic
ATAACTTCCTCGAGTCTTGG+CGG 0.530505 3_2:+74519586 None:intergenic
TCAACAATTGTTGGTGTACG+TGG 0.543817 3_2:-74519625 Msa0424320:three_prime_UTR
AGGCATGGATATGCACTGCT+TGG 0.562799 3_2:-74520094 Msa0424320:three_prime_UTR
ACAGGAGCTGAAGTAGAGAA+AGG 0.563721 3_2:-74519975 Msa0424320:intron
CATTGGTTGAGATATCCTGC+CGG 0.570982 3_2:-74521006 Msa0424320:CDS
TCTTCAAGACGGAGAAGACG+AGG 0.580161 3_2:-74520632 Msa0424320:CDS
AGAAAGCAACTGGACTGAGA+AGG 0.581732 3_2:+74522318 None:intergenic
AGAAATGTGTTGCACCGCAT+TGG 0.582395 3_2:-74521023 Msa0424320:CDS
AATTGCTGTAAACACCCGGC+AGG 0.612562 3_2:+74520991 None:intergenic
TTCAGCACCGCCAAGACTCG+AGG 0.615879 3_2:-74519593 Msa0424320:three_prime_UTR
TTGAAATGGAGGCATTTGTG+CGG 0.616126 3_2:-74523423 None:intergenic
GGTAGTGGGCATGCGTTATG+GGG 0.619529 3_2:-74520125 Msa0424320:three_prime_UTR
GCAATTACCAGCGGAGCATG+AGG 0.621151 3_2:+74520427 None:intergenic
ATTTGTCTAAGAAATATCCA+AGG 0.624404 3_2:+74519647 None:intergenic
GTGTTTCTGGAACTGGCATG+TGG 0.636580 3_2:-74521077 Msa0424320:CDS
GAAATTGCACAGAACAGTGA+AGG 0.639054 3_2:+74522262 None:intergenic
GCAGGATATCTCAACCAATG+CGG 0.761727 3_2:+74521009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTATATATAATTT+TGG - chr3_2:74519982-74520001 Msa0424320:intron 0.0%
!!! TTTAATTTATATATAATTTT+GGG - chr3_2:74519983-74520002 Msa0424320:intron 0.0%
!!! TTTTAATTTATATATAATTT+TGG - chr3_2:74519982-74520001 Msa0424320:intron 0.0%
!!! TTTAATTTATATATAATTTT+GGG - chr3_2:74519983-74520002 Msa0424320:intron 0.0%
!!! TATGTTTTTTTTAATGAAAT+GGG - chr3_2:74520826-74520845 Msa0424320:intron 10.0%
!! TGTTCAAAAAAAAAAAATTA+AGG + chr3_2:74521493-74521512 None:intergenic 10.0%
!! AAGTTCATATAATTAAATTA+AGG + chr3_2:74521525-74521544 None:intergenic 10.0%
!!! TTTTGTTTAAAAAATACTAA+AGG + chr3_2:74521588-74521607 None:intergenic 10.0%
!!! TATGTTTTTTTTAATGAAAT+GGG - chr3_2:74520826-74520845 Msa0424320:intron 10.0%
!! TGTTCAAAAAAAAAAAATTA+AGG + chr3_2:74521493-74521512 None:intergenic 10.0%
!! AAGTTCATATAATTAAATTA+AGG + chr3_2:74521525-74521544 None:intergenic 10.0%
!!! TTTTGTTTAAAAAATACTAA+AGG + chr3_2:74521588-74521607 None:intergenic 10.0%
!! TCAATAAAAAATAAACTAAG+TGG - chr3_2:74519726-74519745 Msa0424320:intron 15.0%
!!! CTTTATCTTGTTTTTTTTTA+GGG + chr3_2:74520219-74520238 None:intergenic 15.0%
!!! ACTTTATCTTGTTTTTTTTT+AGG + chr3_2:74520220-74520239 None:intergenic 15.0%
!!! ATTTTTTGATTTTGATGAAA+TGG - chr3_2:74520617-74520636 Msa0424320:CDS 15.0%
!!! TTTTTTGATTTTGATGAAAT+GGG - chr3_2:74520618-74520637 Msa0424320:CDS 15.0%
!!! TTTGTTGAAATTTTGATATT+TGG - chr3_2:74520641-74520660 Msa0424320:CDS 15.0%
!!! GTATGTTTTTTTTAATGAAA+TGG - chr3_2:74520825-74520844 Msa0424320:intron 15.0%
!! TATAATTTATAACCAATACT+AGG - chr3_2:74521423-74521442 Msa0424320:intron 15.0%
!! ATTATGTTATCATATCAATT+AGG - chr3_2:74521656-74521675 Msa0424320:intron 15.0%
!!! ATCAATTTTGTTTGAAATTA+TGG - chr3_2:74522212-74522231 Msa0424320:intron 15.0%
!! CATAAAAATTGTTTAGTTAA+TGG + chr3_2:74522900-74522919 None:intergenic 15.0%
!! TCAATAAAAAATAAACTAAG+TGG - chr3_2:74519726-74519745 Msa0424320:intron 15.0%
!!! CTTTATCTTGTTTTTTTTTA+GGG + chr3_2:74520219-74520238 None:intergenic 15.0%
!!! ACTTTATCTTGTTTTTTTTT+AGG + chr3_2:74520220-74520239 None:intergenic 15.0%
!!! ATTTTTTGATTTTGATGAAA+TGG - chr3_2:74520617-74520636 Msa0424320:CDS 15.0%
!!! TTTTTTGATTTTGATGAAAT+GGG - chr3_2:74520618-74520637 Msa0424320:CDS 15.0%
!!! TTTGTTGAAATTTTGATATT+TGG - chr3_2:74520641-74520660 Msa0424320:CDS 15.0%
!!! GTATGTTTTTTTTAATGAAA+TGG - chr3_2:74520825-74520844 Msa0424320:intron 15.0%
!! TATAATTTATAACCAATACT+AGG - chr3_2:74521423-74521442 Msa0424320:intron 15.0%
!! ATTATGTTATCATATCAATT+AGG - chr3_2:74521656-74521675 Msa0424320:intron 15.0%
!!! ATCAATTTTGTTTGAAATTA+TGG - chr3_2:74522212-74522231 Msa0424320:intron 15.0%
!! CATAAAAATTGTTTAGTTAA+TGG + chr3_2:74522900-74522919 None:intergenic 15.0%
!!! TAATTTTTATGTCGCAAATT+TGG - chr3_2:74520012-74520031 Msa0424320:intron 20.0%
!!! AATTTTTATGTCGCAAATTT+GGG - chr3_2:74520013-74520032 Msa0424320:intron 20.0%
!!! TAATATTTTTGTCGCAAATT+TGG - chr3_2:74520043-74520062 Msa0424320:intron 20.0%
!!! AATATTTTTGTCGCAAATTT+GGG - chr3_2:74520044-74520063 Msa0424320:intron 20.0%
!! ACTTTAATGCAAAAATTTAG+TGG - chr3_2:74520099-74520118 Msa0424320:three_prime_UTR 20.0%
!! AAAAATTTAGTGGAAATTGT+TGG - chr3_2:74520109-74520128 Msa0424320:three_prime_UTR 20.0%
!!! TATTTTTTTGGTGAATAATG+TGG - chr3_2:74520138-74520157 Msa0424320:three_prime_UTR 20.0%
!!! ATTTTTTTGGTGAATAATGT+GGG - chr3_2:74520139-74520158 Msa0424320:three_prime_UTR 20.0%
!!! TTTTGTTTTTTTGTTACAGA+TGG + chr3_2:74520299-74520318 None:intergenic 20.0%
!! CTTTAATGAAAATTTGTGTA+TGG - chr3_2:74520726-74520745 Msa0424320:CDS 20.0%
!!! GTTTGTTGAAATTATGAAAT+GGG - chr3_2:74520748-74520767 Msa0424320:intron 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG - chr3_2:74520888-74520907 Msa0424320:intron 20.0%
!! AAATTCAAACAAGTAAATCA+AGG + chr3_2:74521201-74521220 None:intergenic 20.0%
!!! GTTTTTAAATGACTAACTAT+TGG - chr3_2:74521299-74521318 Msa0424320:intron 20.0%
!!! TTTTTTTTTGAACAACTTAC+TGG - chr3_2:74521499-74521518 Msa0424320:intron 20.0%
!! AAAATAAACAATTCCCTTTA+AGG + chr3_2:74521560-74521579 None:intergenic 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG - chr3_2:74520888-74520907 Msa0424320:intron 20.0%
!! CAGAAGATATAATATTAACA+AGG + chr3_2:74522247-74522266 None:intergenic 20.0%
!!! TTGTAGACTTAATTGTTTTT+TGG - chr3_2:74522407-74522426 Msa0424320:intron 20.0%
!!! TGTAGACTTAATTGTTTTTT+GGG - chr3_2:74522408-74522427 Msa0424320:intron 20.0%
!!! TAGATTTCTAAAGAATGTAA+AGG + chr3_2:74522995-74523014 None:intergenic 20.0%
!!! AATTTTCTGATGTATAATGA+GGG - chr3_2:74523021-74523040 Msa0424320:intron 20.0%
!!! TATACCTTCAAGTTATTATA+AGG - chr3_2:74523238-74523257 Msa0424320:intron 20.0%
!! TTAACCTTATAATAACTTGA+AGG + chr3_2:74523245-74523264 None:intergenic 20.0%
!! TTATTATAAGGTTAACCTAT+TGG - chr3_2:74523250-74523269 Msa0424320:intron 20.0%
!!! AGATAGTTATATGTTTCTAA+TGG - chr3_2:74523301-74523320 Msa0424320:intron 20.0%
!!! TAATTTTTATGTCGCAAATT+TGG - chr3_2:74520012-74520031 Msa0424320:intron 20.0%
!!! AATTTTTATGTCGCAAATTT+GGG - chr3_2:74520013-74520032 Msa0424320:intron 20.0%
!!! TAATATTTTTGTCGCAAATT+TGG - chr3_2:74520043-74520062 Msa0424320:intron 20.0%
!!! AATATTTTTGTCGCAAATTT+GGG - chr3_2:74520044-74520063 Msa0424320:intron 20.0%
!! ACTTTAATGCAAAAATTTAG+TGG - chr3_2:74520099-74520118 Msa0424320:three_prime_UTR 20.0%
!! AAAAATTTAGTGGAAATTGT+TGG - chr3_2:74520109-74520128 Msa0424320:three_prime_UTR 20.0%
!!! TATTTTTTTGGTGAATAATG+TGG - chr3_2:74520138-74520157 Msa0424320:three_prime_UTR 20.0%
!!! ATTTTTTTGGTGAATAATGT+GGG - chr3_2:74520139-74520158 Msa0424320:three_prime_UTR 20.0%
!!! TTTTGTTTTTTTGTTACAGA+TGG + chr3_2:74520299-74520318 None:intergenic 20.0%
!! CTTTAATGAAAATTTGTGTA+TGG - chr3_2:74520726-74520745 Msa0424320:CDS 20.0%
!!! GTTTGTTGAAATTATGAAAT+GGG - chr3_2:74520748-74520767 Msa0424320:intron 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG - chr3_2:74520888-74520907 Msa0424320:intron 20.0%
!! AAATTCAAACAAGTAAATCA+AGG + chr3_2:74521201-74521220 None:intergenic 20.0%
!!! GTTTTTAAATGACTAACTAT+TGG - chr3_2:74521299-74521318 Msa0424320:intron 20.0%
!!! TTTTTTTTTGAACAACTTAC+TGG - chr3_2:74521499-74521518 Msa0424320:intron 20.0%
!! AAAATAAACAATTCCCTTTA+AGG + chr3_2:74521560-74521579 None:intergenic 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG - chr3_2:74520888-74520907 Msa0424320:intron 20.0%
!! CAGAAGATATAATATTAACA+AGG + chr3_2:74522247-74522266 None:intergenic 20.0%
!!! TTGTAGACTTAATTGTTTTT+TGG - chr3_2:74522407-74522426 Msa0424320:intron 20.0%
!!! TGTAGACTTAATTGTTTTTT+GGG - chr3_2:74522408-74522427 Msa0424320:intron 20.0%
!!! TAGATTTCTAAAGAATGTAA+AGG + chr3_2:74522995-74523014 None:intergenic 20.0%
!!! AATTTTCTGATGTATAATGA+GGG - chr3_2:74523021-74523040 Msa0424320:intron 20.0%
!!! TATACCTTCAAGTTATTATA+AGG - chr3_2:74523238-74523257 Msa0424320:intron 20.0%
!! TTAACCTTATAATAACTTGA+AGG + chr3_2:74523245-74523264 None:intergenic 20.0%
!! TTATTATAAGGTTAACCTAT+TGG - chr3_2:74523250-74523269 Msa0424320:intron 20.0%
!!! AGATAGTTATATGTTTCTAA+TGG - chr3_2:74523301-74523320 Msa0424320:intron 20.0%
!!! GAACATTCATGTTTTGAAAA+AGG - chr3_2:74519784-74519803 Msa0424320:intron 25.0%
! AGAAAACAGTCAAATTAAGA+CGG - chr3_2:74519875-74519894 Msa0424320:intron 25.0%
! AAAGAATATCACCTATATTG+AGG + chr3_2:74520565-74520584 None:intergenic 25.0%
!! GACTCAAATTTTCATTAAAG+AGG + chr3_2:74520803-74520822 None:intergenic 25.0%
! CTTTAATGAAAATTTGAGTC+TGG - chr3_2:74520803-74520822 Msa0424320:intron 25.0%
!!! GGTTTGTTGAAATTATGAAA+TGG - chr3_2:74520747-74520766 Msa0424320:intron 25.0%
!! CCATCATTTGAAATAAACAA+TGG + chr3_2:74520975-74520994 None:intergenic 25.0%
! CCATTGTTTATTTCAAATGA+TGG - chr3_2:74520972-74520991 Msa0424320:intron 25.0%
! AGGAAGCAATTATCTATAAT+TGG - chr3_2:74521027-74521046 Msa0424320:CDS 25.0%
! AAGCAATTATCTATAATTGG+AGG - chr3_2:74521030-74521049 Msa0424320:CDS 25.0%
! AGCAATTATCTATAATTGGA+GGG - chr3_2:74521031-74521050 Msa0424320:CDS 25.0%
!!! CATAAAACTAGTATTGATGA+TGG - chr3_2:74521086-74521105 Msa0424320:CDS 25.0%
!!! TCGATTTTTTGAAACATGAA+TGG - chr3_2:74521164-74521183 Msa0424320:intron 25.0%
! TTTATAACCAATACTAGGTT+TGG - chr3_2:74521428-74521447 Msa0424320:intron 25.0%
! AGTAAGTAAATGCATTCAAA+AGG + chr3_2:74521993-74522012 None:intergenic 25.0%
!! TTCTTTGTTAACGATTTTGA+TGG - chr3_2:74522102-74522121 Msa0424320:intron 25.0%
!!! TCTTTGTTAACGATTTTGAT+GGG - chr3_2:74522103-74522122 Msa0424320:intron 25.0%
!! ATTGAAGATTGTTATTAGTG+TGG - chr3_2:74522434-74522453 Msa0424320:intron 25.0%
!! TTGAAGATTGTTATTAGTGT+GGG - chr3_2:74522435-74522454 Msa0424320:intron 25.0%
! TAGTTTAGATGAAAGTTTGA+TGG - chr3_2:74522480-74522499 Msa0424320:intron 25.0%
! AGTTTAGATGAAAGTTTGAT+GGG - chr3_2:74522481-74522500 Msa0424320:intron 25.0%
! TGATGCTAACATATACAAAA+AGG + chr3_2:74522751-74522770 None:intergenic 25.0%
! AGAAGTTAATGACCAAATTA+AGG - chr3_2:74522840-74522859 Msa0424320:intron 25.0%
! GAAGTTAATGACCAAATTAA+GGG - chr3_2:74522841-74522860 Msa0424320:intron 25.0%
! TAAAGTTGTTACCCTTAATT+TGG + chr3_2:74522855-74522874 None:intergenic 25.0%
! TGAATGATGGTTTAAAAGAA+TGG - chr3_2:74522945-74522964 Msa0424320:intron 25.0%
!! TTTCTAAAGAATGTAAAGGA+GGG + chr3_2:74522991-74523010 None:intergenic 25.0%
!! ATTTCTAAAGAATGTAAAGG+AGG + chr3_2:74522992-74523011 None:intergenic 25.0%
!! GAATTTTCTGATGTATAATG+AGG - chr3_2:74523020-74523039 Msa0424320:intron 25.0%
! TGATTCTGTACAAAAATACA+AGG + chr3_2:74523098-74523117 None:intergenic 25.0%
! ATTTGTCTAAGAAATATCCA+AGG + chr3_2:74523123-74523142 None:intergenic 25.0%
! TTAGACAAATCAACAATTGT+TGG - chr3_2:74523133-74523152 Msa0424320:intron 25.0%
! AGTATTATCAATCATCCAAT+AGG + chr3_2:74523268-74523287 None:intergenic 25.0%
!!! GAACATTCATGTTTTGAAAA+AGG - chr3_2:74519784-74519803 Msa0424320:intron 25.0%
! AGAAAACAGTCAAATTAAGA+CGG - chr3_2:74519875-74519894 Msa0424320:intron 25.0%
! AAAGAATATCACCTATATTG+AGG + chr3_2:74520565-74520584 None:intergenic 25.0%
!! GACTCAAATTTTCATTAAAG+AGG + chr3_2:74520803-74520822 None:intergenic 25.0%
! CTTTAATGAAAATTTGAGTC+TGG - chr3_2:74520803-74520822 Msa0424320:intron 25.0%
!!! GGTTTGTTGAAATTATGAAA+TGG - chr3_2:74520747-74520766 Msa0424320:intron 25.0%
!! CCATCATTTGAAATAAACAA+TGG + chr3_2:74520975-74520994 None:intergenic 25.0%
! CCATTGTTTATTTCAAATGA+TGG - chr3_2:74520972-74520991 Msa0424320:intron 25.0%
! AGGAAGCAATTATCTATAAT+TGG - chr3_2:74521027-74521046 Msa0424320:CDS 25.0%
! AAGCAATTATCTATAATTGG+AGG - chr3_2:74521030-74521049 Msa0424320:CDS 25.0%
! AGCAATTATCTATAATTGGA+GGG - chr3_2:74521031-74521050 Msa0424320:CDS 25.0%
!!! CATAAAACTAGTATTGATGA+TGG - chr3_2:74521086-74521105 Msa0424320:CDS 25.0%
!!! TCGATTTTTTGAAACATGAA+TGG - chr3_2:74521164-74521183 Msa0424320:intron 25.0%
! TTTATAACCAATACTAGGTT+TGG - chr3_2:74521428-74521447 Msa0424320:intron 25.0%
! AGTAAGTAAATGCATTCAAA+AGG + chr3_2:74521993-74522012 None:intergenic 25.0%
!! TTCTTTGTTAACGATTTTGA+TGG - chr3_2:74522102-74522121 Msa0424320:intron 25.0%
!!! TCTTTGTTAACGATTTTGAT+GGG - chr3_2:74522103-74522122 Msa0424320:intron 25.0%
!! ATTGAAGATTGTTATTAGTG+TGG - chr3_2:74522434-74522453 Msa0424320:intron 25.0%
!! TTGAAGATTGTTATTAGTGT+GGG - chr3_2:74522435-74522454 Msa0424320:intron 25.0%
! TAGTTTAGATGAAAGTTTGA+TGG - chr3_2:74522480-74522499 Msa0424320:intron 25.0%
! AGTTTAGATGAAAGTTTGAT+GGG - chr3_2:74522481-74522500 Msa0424320:intron 25.0%
! TGATGCTAACATATACAAAA+AGG + chr3_2:74522751-74522770 None:intergenic 25.0%
! AGAAGTTAATGACCAAATTA+AGG - chr3_2:74522840-74522859 Msa0424320:intron 25.0%
! GAAGTTAATGACCAAATTAA+GGG - chr3_2:74522841-74522860 Msa0424320:intron 25.0%
! TAAAGTTGTTACCCTTAATT+TGG + chr3_2:74522855-74522874 None:intergenic 25.0%
! TGAATGATGGTTTAAAAGAA+TGG - chr3_2:74522945-74522964 Msa0424320:intron 25.0%
!! TTTCTAAAGAATGTAAAGGA+GGG + chr3_2:74522991-74523010 None:intergenic 25.0%
!! ATTTCTAAAGAATGTAAAGG+AGG + chr3_2:74522992-74523011 None:intergenic 25.0%
!! GAATTTTCTGATGTATAATG+AGG - chr3_2:74523020-74523039 Msa0424320:intron 25.0%
! TGATTCTGTACAAAAATACA+AGG + chr3_2:74523098-74523117 None:intergenic 25.0%
! ATTTGTCTAAGAAATATCCA+AGG + chr3_2:74523123-74523142 None:intergenic 25.0%
! TTAGACAAATCAACAATTGT+TGG - chr3_2:74523133-74523152 Msa0424320:intron 25.0%
! AGTATTATCAATCATCCAAT+AGG + chr3_2:74523268-74523287 None:intergenic 25.0%
ATTTGTGTAGTGAACTATCA+AGG - chr3_2:74519439-74519458 Msa0424320:three_prime_UTR 30.0%
AGTTGCTACCTATGTAAATT+GGG + chr3_2:74519762-74519781 None:intergenic 30.0%
AAGTTGCTACCTATGTAAAT+TGG + chr3_2:74519763-74519782 None:intergenic 30.0%
AATTTACATAGGTAGCAACT+TGG - chr3_2:74519762-74519781 Msa0424320:intron 30.0%
! TAAAGTAGATCAAGTTGTGA+CGG + chr3_2:74520085-74520104 None:intergenic 30.0%
AATTTAGTGGAAATTGTTGG+AGG - chr3_2:74520112-74520131 Msa0424320:three_prime_UTR 30.0%
ATTTAGTGGAAATTGTTGGA+GGG - chr3_2:74520113-74520132 Msa0424320:three_prime_UTR 30.0%
!!! TGTTGGAGGGAATATTTTTT+TGG - chr3_2:74520126-74520145 Msa0424320:three_prime_UTR 30.0%
!! ATTGTGTTTTTGTGCGTATA+TGG + chr3_2:74520276-74520295 None:intergenic 30.0%
! GTTTGTTGAAAATTTGAGTC+TGG - chr3_2:74520671-74520690 Msa0424320:CDS 30.0%
!!! TTTTGACTTCTGCTGAAATT+AGG - chr3_2:74520698-74520717 Msa0424320:CDS 30.0%
GAAATGCAGGTTATTTATGT+TGG - chr3_2:74521108-74521127 Msa0424320:intron 30.0%
TAATGATTCGACAATTCTCA+TGG - chr3_2:74521329-74521348 Msa0424320:intron 30.0%
AAAAAATTAAGGCCAGTAAG+AGG + chr3_2:74521482-74521501 None:intergenic 30.0%
TTGAACTTGATTCTCCTTAA+AGG - chr3_2:74521543-74521562 Msa0424320:intron 30.0%
TGAACTTGATTCTCCTTAAA+GGG - chr3_2:74521544-74521563 Msa0424320:intron 30.0%
TGTAAAACAGTCCTTGATTT+GGG - chr3_2:74521614-74521633 Msa0424320:intron 30.0%
!! GGAGAATATTTTTGTGTTTC+TGG - chr3_2:74521677-74521696 Msa0424320:intron 30.0%
!!! TATTTTTGTGTTTCTGGAAC+TGG - chr3_2:74521683-74521702 Msa0424320:intron 30.0%
GACAGTTATGAAAATGTTGA+AGG - chr3_2:74522054-74522073 Msa0424320:intron 30.0%
!!! TTTTTAGGTTAGTTCCTATG+TGG + chr3_2:74522166-74522185 None:intergenic 30.0%
GGAACTAACCTAAAAAATTC+CGG - chr3_2:74522170-74522189 Msa0424320:intron 30.0%
GAACTAACCTAAAAAATTCC+GGG - chr3_2:74522171-74522190 Msa0424320:intron 30.0%
AACTAACCTAAAAAATTCCG+GGG - chr3_2:74522172-74522191 Msa0424320:intron 30.0%
TGTCTGTTCAATTAGCAAAT+GGG + chr3_2:74522271-74522290 None:intergenic 30.0%
! CAGTTACGACATATTTGTTA+TGG + chr3_2:74522294-74522313 None:intergenic 30.0%
TTCATCTAAACTATGAAGCA+GGG + chr3_2:74522473-74522492 None:intergenic 30.0%
TTTCATCTAAACTATGAAGC+AGG + chr3_2:74522474-74522493 None:intergenic 30.0%
! AGTTGGTTTCAATGTAACAA+AGG + chr3_2:74522529-74522548 None:intergenic 30.0%
TAGCAACCAAGAATAACAAT+AGG + chr3_2:74522564-74522583 None:intergenic 30.0%
!! TTTTTGGGCATGGAATTTAT+TGG - chr3_2:74522621-74522640 Msa0424320:intron 30.0%
! ATCATATCTAGTTGTCCTTT+TGG - chr3_2:74522767-74522786 Msa0424320:intron 30.0%
AAAGCTCTTTATCATCTCTT+TGG - chr3_2:74523045-74523064 Msa0424320:intron 30.0%
AAGCTCTTTATCATCTCTTT+GGG - chr3_2:74523046-74523065 Msa0424320:intron 30.0%
! TTTTGTACAGAATCAAACCT+TGG - chr3_2:74523103-74523122 Msa0424320:intron 30.0%
ATTTGTGTAGTGAACTATCA+AGG - chr3_2:74519439-74519458 Msa0424320:three_prime_UTR 30.0%
AGTTGCTACCTATGTAAATT+GGG + chr3_2:74519762-74519781 None:intergenic 30.0%
AAGTTGCTACCTATGTAAAT+TGG + chr3_2:74519763-74519782 None:intergenic 30.0%
AATTTACATAGGTAGCAACT+TGG - chr3_2:74519762-74519781 Msa0424320:intron 30.0%
! TAAAGTAGATCAAGTTGTGA+CGG + chr3_2:74520085-74520104 None:intergenic 30.0%
AATTTAGTGGAAATTGTTGG+AGG - chr3_2:74520112-74520131 Msa0424320:three_prime_UTR 30.0%
ATTTAGTGGAAATTGTTGGA+GGG - chr3_2:74520113-74520132 Msa0424320:three_prime_UTR 30.0%
!!! TGTTGGAGGGAATATTTTTT+TGG - chr3_2:74520126-74520145 Msa0424320:three_prime_UTR 30.0%
!! ATTGTGTTTTTGTGCGTATA+TGG + chr3_2:74520276-74520295 None:intergenic 30.0%
! GTTTGTTGAAAATTTGAGTC+TGG - chr3_2:74520671-74520690 Msa0424320:CDS 30.0%
!!! TTTTGACTTCTGCTGAAATT+AGG - chr3_2:74520698-74520717 Msa0424320:CDS 30.0%
GAAATGCAGGTTATTTATGT+TGG - chr3_2:74521108-74521127 Msa0424320:intron 30.0%
TAATGATTCGACAATTCTCA+TGG - chr3_2:74521329-74521348 Msa0424320:intron 30.0%
AAAAAATTAAGGCCAGTAAG+AGG + chr3_2:74521482-74521501 None:intergenic 30.0%
TTGAACTTGATTCTCCTTAA+AGG - chr3_2:74521543-74521562 Msa0424320:intron 30.0%
TGAACTTGATTCTCCTTAAA+GGG - chr3_2:74521544-74521563 Msa0424320:intron 30.0%
TGTAAAACAGTCCTTGATTT+GGG - chr3_2:74521614-74521633 Msa0424320:intron 30.0%
!! GGAGAATATTTTTGTGTTTC+TGG - chr3_2:74521677-74521696 Msa0424320:intron 30.0%
!!! TATTTTTGTGTTTCTGGAAC+TGG - chr3_2:74521683-74521702 Msa0424320:intron 30.0%
GACAGTTATGAAAATGTTGA+AGG - chr3_2:74522054-74522073 Msa0424320:intron 30.0%
!!! TTTTTAGGTTAGTTCCTATG+TGG + chr3_2:74522166-74522185 None:intergenic 30.0%
GGAACTAACCTAAAAAATTC+CGG - chr3_2:74522170-74522189 Msa0424320:intron 30.0%
GAACTAACCTAAAAAATTCC+GGG - chr3_2:74522171-74522190 Msa0424320:intron 30.0%
AACTAACCTAAAAAATTCCG+GGG - chr3_2:74522172-74522191 Msa0424320:intron 30.0%
TGTCTGTTCAATTAGCAAAT+GGG + chr3_2:74522271-74522290 None:intergenic 30.0%
! CAGTTACGACATATTTGTTA+TGG + chr3_2:74522294-74522313 None:intergenic 30.0%
TTCATCTAAACTATGAAGCA+GGG + chr3_2:74522473-74522492 None:intergenic 30.0%
TTTCATCTAAACTATGAAGC+AGG + chr3_2:74522474-74522493 None:intergenic 30.0%
! AGTTGGTTTCAATGTAACAA+AGG + chr3_2:74522529-74522548 None:intergenic 30.0%
TAGCAACCAAGAATAACAAT+AGG + chr3_2:74522564-74522583 None:intergenic 30.0%
!! TTTTTGGGCATGGAATTTAT+TGG - chr3_2:74522621-74522640 Msa0424320:intron 30.0%
! ATCATATCTAGTTGTCCTTT+TGG - chr3_2:74522767-74522786 Msa0424320:intron 30.0%
AAAGCTCTTTATCATCTCTT+TGG - chr3_2:74523045-74523064 Msa0424320:intron 30.0%
AAGCTCTTTATCATCTCTTT+GGG - chr3_2:74523046-74523065 Msa0424320:intron 30.0%
! TTTTGTACAGAATCAAACCT+TGG - chr3_2:74523103-74523122 Msa0424320:intron 30.0%
! ACAATTCTCACACCTTTTGA+AGG + chr3_2:74519381-74519400 None:intergenic 35.0%
ACTACACAAATCCACTCATT+GGG + chr3_2:74519430-74519449 None:intergenic 35.0%
AAGAGAAGAGGAAATCACAA+AGG + chr3_2:74519495-74519514 None:intergenic 35.0%
CTAAAAATGCAGTGTATGTG+TGG - chr3_2:74519537-74519556 Msa0424320:three_prime_UTR 35.0%
TAAATCGAAAGCTATGACAG+TGG + chr3_2:74519588-74519607 None:intergenic 35.0%
ACAGTTCTCCCAATTTACAT+AGG - chr3_2:74519751-74519770 Msa0424320:intron 35.0%
! CCGGTTTAATTAATTTGGGA+CGG + chr3_2:74519924-74519943 None:intergenic 35.0%
CCGTCCCAAATTAATTAAAC+CGG - chr3_2:74519921-74519940 Msa0424320:intron 35.0%
CGTCCCAAATTAATTAAACC+GGG - chr3_2:74519922-74519941 Msa0424320:intron 35.0%
CGTCCCGGTTTAATTAATTT+GGG + chr3_2:74519928-74519947 None:intergenic 35.0%
CCAAATTAATTAAACCGGGA+CGG - chr3_2:74519926-74519945 Msa0424320:intron 35.0%
TTTATGTCGCAAATTTGGGA+CGG - chr3_2:74520017-74520036 Msa0424320:intron 35.0%
! TTTTTGTCGCAAATTTGGGA+CGG - chr3_2:74520048-74520067 Msa0424320:intron 35.0%
!! TTTTTGGTGAATAATGTGGG+CGG - chr3_2:74520142-74520161 Msa0424320:three_prime_UTR 35.0%
TCAGTTTCGTTCCTCAATAT+AGG - chr3_2:74520551-74520570 Msa0424320:intron 35.0%
GCGTATTATCACTAAAGTCA+CGG + chr3_2:74520929-74520948 None:intergenic 35.0%
ATTGGATTGTAGTCAAGAAG+AGG - chr3_2:74521007-74521026 Msa0424320:CDS 35.0%
!! AGTATTGATGATGGAAATGC+AGG - chr3_2:74521095-74521114 Msa0424320:intron 35.0%
TAAGCTTTCAACAAAACCCT+TGG + chr3_2:74521141-74521160 None:intergenic 35.0%
ATCAACCAAAAAGCAGTCAT+AGG + chr3_2:74521276-74521295 None:intergenic 35.0%
AAAATCGCCAAACCTAGTAT+TGG + chr3_2:74521438-74521457 None:intergenic 35.0%
GTGTAAAACAGTCCTTGATT+TGG - chr3_2:74521613-74521632 Msa0424320:intron 35.0%
! GTAAAACAGTCCTTGATTTG+GGG - chr3_2:74521615-74521634 Msa0424320:intron 35.0%
!! TAAAACAGTCCTTGATTTGG+GGG - chr3_2:74521616-74521635 Msa0424320:intron 35.0%
!! CAGGTTTGTTTTCTATGTTC+AGG - chr3_2:74521875-74521894 Msa0424320:intron 35.0%
TACTGAGTTTGTGAATTTGC+AGG - chr3_2:74522009-74522028 Msa0424320:intron 35.0%
!!! GATTTACCCCGGAATTTTTT+AGG + chr3_2:74522181-74522200 None:intergenic 35.0%
AACAGAAACTAGATTTACCC+CGG + chr3_2:74522192-74522211 None:intergenic 35.0%
GTGTCTGTTCAATTAGCAAA+TGG + chr3_2:74522272-74522291 None:intergenic 35.0%
! TGAGTGCCTATTGTTATTCT+TGG - chr3_2:74522555-74522574 Msa0424320:intron 35.0%
!!! TCTACTGGTAGCTACTTTTT+GGG - chr3_2:74522606-74522625 Msa0424320:intron 35.0%
! GCATGGAATTTATTGGTAGT+GGG - chr3_2:74522628-74522647 Msa0424320:intron 35.0%
ATATGCACTGCTTGGATTAT+AGG - chr3_2:74522681-74522700 Msa0424320:intron 35.0%
TATAGGTCATCACAGTAACA+TGG - chr3_2:74522698-74522717 Msa0424320:intron 35.0%
! AAAGCATCTGCATTGAATGA+TGG - chr3_2:74522932-74522951 Msa0424320:intron 35.0%
AGCTCTTTATCATCTCTTTG+GGG - chr3_2:74523047-74523066 Msa0424320:intron 35.0%
! ACAATTCTCACACCTTTTGA+AGG + chr3_2:74519381-74519400 None:intergenic 35.0%
ACTACACAAATCCACTCATT+GGG + chr3_2:74519430-74519449 None:intergenic 35.0%
AAGAGAAGAGGAAATCACAA+AGG + chr3_2:74519495-74519514 None:intergenic 35.0%
CTAAAAATGCAGTGTATGTG+TGG - chr3_2:74519537-74519556 Msa0424320:three_prime_UTR 35.0%
TAAATCGAAAGCTATGACAG+TGG + chr3_2:74519588-74519607 None:intergenic 35.0%
ACAGTTCTCCCAATTTACAT+AGG - chr3_2:74519751-74519770 Msa0424320:intron 35.0%
! CCGGTTTAATTAATTTGGGA+CGG + chr3_2:74519924-74519943 None:intergenic 35.0%
CCGTCCCAAATTAATTAAAC+CGG - chr3_2:74519921-74519940 Msa0424320:intron 35.0%
CGTCCCAAATTAATTAAACC+GGG - chr3_2:74519922-74519941 Msa0424320:intron 35.0%
CGTCCCGGTTTAATTAATTT+GGG + chr3_2:74519928-74519947 None:intergenic 35.0%
CCAAATTAATTAAACCGGGA+CGG - chr3_2:74519926-74519945 Msa0424320:intron 35.0%
TTTATGTCGCAAATTTGGGA+CGG - chr3_2:74520017-74520036 Msa0424320:intron 35.0%
! TTTTTGTCGCAAATTTGGGA+CGG - chr3_2:74520048-74520067 Msa0424320:intron 35.0%
!! TTTTTGGTGAATAATGTGGG+CGG - chr3_2:74520142-74520161 Msa0424320:three_prime_UTR 35.0%
TCAGTTTCGTTCCTCAATAT+AGG - chr3_2:74520551-74520570 Msa0424320:intron 35.0%
GCGTATTATCACTAAAGTCA+CGG + chr3_2:74520929-74520948 None:intergenic 35.0%
ATTGGATTGTAGTCAAGAAG+AGG - chr3_2:74521007-74521026 Msa0424320:CDS 35.0%
!! AGTATTGATGATGGAAATGC+AGG - chr3_2:74521095-74521114 Msa0424320:intron 35.0%
TAAGCTTTCAACAAAACCCT+TGG + chr3_2:74521141-74521160 None:intergenic 35.0%
ATCAACCAAAAAGCAGTCAT+AGG + chr3_2:74521276-74521295 None:intergenic 35.0%
AAAATCGCCAAACCTAGTAT+TGG + chr3_2:74521438-74521457 None:intergenic 35.0%
GTGTAAAACAGTCCTTGATT+TGG - chr3_2:74521613-74521632 Msa0424320:intron 35.0%
! GTAAAACAGTCCTTGATTTG+GGG - chr3_2:74521615-74521634 Msa0424320:intron 35.0%
!! TAAAACAGTCCTTGATTTGG+GGG - chr3_2:74521616-74521635 Msa0424320:intron 35.0%
!! CAGGTTTGTTTTCTATGTTC+AGG - chr3_2:74521875-74521894 Msa0424320:intron 35.0%
TACTGAGTTTGTGAATTTGC+AGG - chr3_2:74522009-74522028 Msa0424320:intron 35.0%
!!! GATTTACCCCGGAATTTTTT+AGG + chr3_2:74522181-74522200 None:intergenic 35.0%
AACAGAAACTAGATTTACCC+CGG + chr3_2:74522192-74522211 None:intergenic 35.0%
GTGTCTGTTCAATTAGCAAA+TGG + chr3_2:74522272-74522291 None:intergenic 35.0%
! TGAGTGCCTATTGTTATTCT+TGG - chr3_2:74522555-74522574 Msa0424320:intron 35.0%
!!! TCTACTGGTAGCTACTTTTT+GGG - chr3_2:74522606-74522625 Msa0424320:intron 35.0%
! GCATGGAATTTATTGGTAGT+GGG - chr3_2:74522628-74522647 Msa0424320:intron 35.0%
ATATGCACTGCTTGGATTAT+AGG - chr3_2:74522681-74522700 Msa0424320:intron 35.0%
TATAGGTCATCACAGTAACA+TGG - chr3_2:74522698-74522717 Msa0424320:intron 35.0%
! AAAGCATCTGCATTGAATGA+TGG - chr3_2:74522932-74522951 Msa0424320:intron 35.0%
AGCTCTTTATCATCTCTTTG+GGG - chr3_2:74523047-74523066 Msa0424320:intron 35.0%
! GGCGAATTTGAAATGTCAAC+TGG + chr3_2:74519409-74519428 None:intergenic 40.0%
TTTCAAATTCGCCCAATGAG+TGG - chr3_2:74519416-74519435 Msa0424320:three_prime_UTR 40.0%
CACTACACAAATCCACTCAT+TGG + chr3_2:74519431-74519450 None:intergenic 40.0%
TGCTAAGAAGTGAAGAGAAG+AGG + chr3_2:74519507-74519526 None:intergenic 40.0%
CCGTCCCGGTTTAATTAATT+TGG + chr3_2:74519929-74519948 None:intergenic 40.0%
! TTTTGGTGAATAATGTGGGC+GGG - chr3_2:74520143-74520162 Msa0424320:three_prime_UTR 40.0%
AATAATGTGGGCGGGAAAAT+TGG - chr3_2:74520151-74520170 Msa0424320:three_prime_UTR 40.0%
TTGTGCGTATATGGAGGATT+GGG + chr3_2:74520267-74520286 None:intergenic 40.0%
TTTGTGCGTATATGGAGGAT+TGG + chr3_2:74520268-74520287 None:intergenic 40.0%
!! GTGTTTTTGTGCGTATATGG+AGG + chr3_2:74520273-74520292 None:intergenic 40.0%
TTGAGAGAGATCGCGATTTA+GGG + chr3_2:74520329-74520348 None:intergenic 40.0%
TTTGAGAGAGATCGCGATTT+AGG + chr3_2:74520330-74520349 None:intergenic 40.0%
ACTGAGAAGAAGAAAGCAAC+TGG + chr3_2:74520462-74520481 None:intergenic 40.0%
GAAATTGCACAGAACAGTGA+AGG + chr3_2:74520508-74520527 None:intergenic 40.0%
TCACTGTTCTGTGCAATTTC+AGG - chr3_2:74520508-74520527 Msa0424320:intron 40.0%
GGAACGAAACTGAGAAAGAA+AGG + chr3_2:74520544-74520563 None:intergenic 40.0%
! TGATGGTGATACACTGCTAT+TGG - chr3_2:74520989-74521008 Msa0424320:intron 40.0%
TTTATGTTGGAGCTTTGCCA+AGG - chr3_2:74521121-74521140 Msa0424320:intron 40.0%
TTATGTTGGAGCTTTGCCAA+GGG - chr3_2:74521122-74521141 Msa0424320:intron 40.0%
!! TCGTTCCTATGACTGCTTTT+TGG - chr3_2:74521268-74521287 Msa0424320:intron 40.0%
!! AAAACAGTCCTTGATTTGGG+GGG - chr3_2:74521617-74521636 Msa0424320:intron 40.0%
GTGCAACACATTTCTTTGAC+GGG + chr3_2:74521739-74521758 None:intergenic 40.0%
GGTGCAACACATTTCTTTGA+CGG + chr3_2:74521740-74521759 None:intergenic 40.0%
AACGAATTGCTGTAAACACC+CGG + chr3_2:74521783-74521802 None:intergenic 40.0%
TGAGTCTGCATTTAGTGTCT+TGG - chr3_2:74521927-74521946 Msa0424320:intron 40.0%
GAGTCTGCATTTAGTGTCTT+GGG - chr3_2:74521928-74521947 Msa0424320:intron 40.0%
!! GGTTTTATCGCTCTTCAAGA+CGG - chr3_2:74522124-74522143 Msa0424320:intron 40.0%
! AAGACGAGGATTTTCCACAT+AGG - chr3_2:74522149-74522168 Msa0424320:intron 40.0%
TAACTGCCTGTCATGCTTTA+AGG - chr3_2:74522308-74522327 Msa0424320:CDS 40.0%
GTTCTTCCTTAAAGCATGAC+AGG + chr3_2:74522317-74522336 None:intergenic 40.0%
AACACATGAGCAATTACCAG+CGG + chr3_2:74522352-74522371 None:intergenic 40.0%
! TAGATGAAAGTTTGATGGGC+TGG - chr3_2:74522485-74522504 Msa0424320:intron 40.0%
!!! CTCTACTGGTAGCTACTTTT+TGG - chr3_2:74522605-74522624 Msa0424320:intron 40.0%
GGCATGGAATTTATTGGTAG+TGG - chr3_2:74522627-74522646 Msa0424320:intron 40.0%
GCAGATGCTTTCACGATTAA+TGG + chr3_2:74522923-74522942 None:intergenic 40.0%
TCAACAATTGTTGGTGTACG+TGG - chr3_2:74523142-74523161 Msa0424320:intron 40.0%
CTAATAACTTCCTCGAGTCT+TGG + chr3_2:74523187-74523206 None:intergenic 40.0%
! GGCGAATTTGAAATGTCAAC+TGG + chr3_2:74519409-74519428 None:intergenic 40.0%
TTTCAAATTCGCCCAATGAG+TGG - chr3_2:74519416-74519435 Msa0424320:three_prime_UTR 40.0%
CACTACACAAATCCACTCAT+TGG + chr3_2:74519431-74519450 None:intergenic 40.0%
TGCTAAGAAGTGAAGAGAAG+AGG + chr3_2:74519507-74519526 None:intergenic 40.0%
CCGTCCCGGTTTAATTAATT+TGG + chr3_2:74519929-74519948 None:intergenic 40.0%
! TTTTGGTGAATAATGTGGGC+GGG - chr3_2:74520143-74520162 Msa0424320:three_prime_UTR 40.0%
AATAATGTGGGCGGGAAAAT+TGG - chr3_2:74520151-74520170 Msa0424320:three_prime_UTR 40.0%
TTGTGCGTATATGGAGGATT+GGG + chr3_2:74520267-74520286 None:intergenic 40.0%
TTTGTGCGTATATGGAGGAT+TGG + chr3_2:74520268-74520287 None:intergenic 40.0%
!! GTGTTTTTGTGCGTATATGG+AGG + chr3_2:74520273-74520292 None:intergenic 40.0%
TTGAGAGAGATCGCGATTTA+GGG + chr3_2:74520329-74520348 None:intergenic 40.0%
TTTGAGAGAGATCGCGATTT+AGG + chr3_2:74520330-74520349 None:intergenic 40.0%
ACTGAGAAGAAGAAAGCAAC+TGG + chr3_2:74520462-74520481 None:intergenic 40.0%
GAAATTGCACAGAACAGTGA+AGG + chr3_2:74520508-74520527 None:intergenic 40.0%
TCACTGTTCTGTGCAATTTC+AGG - chr3_2:74520508-74520527 Msa0424320:intron 40.0%
GGAACGAAACTGAGAAAGAA+AGG + chr3_2:74520544-74520563 None:intergenic 40.0%
! TGATGGTGATACACTGCTAT+TGG - chr3_2:74520989-74521008 Msa0424320:intron 40.0%
TTTATGTTGGAGCTTTGCCA+AGG - chr3_2:74521121-74521140 Msa0424320:intron 40.0%
TTATGTTGGAGCTTTGCCAA+GGG - chr3_2:74521122-74521141 Msa0424320:intron 40.0%
!! TCGTTCCTATGACTGCTTTT+TGG - chr3_2:74521268-74521287 Msa0424320:intron 40.0%
!! AAAACAGTCCTTGATTTGGG+GGG - chr3_2:74521617-74521636 Msa0424320:intron 40.0%
GTGCAACACATTTCTTTGAC+GGG + chr3_2:74521739-74521758 None:intergenic 40.0%
GGTGCAACACATTTCTTTGA+CGG + chr3_2:74521740-74521759 None:intergenic 40.0%
AACGAATTGCTGTAAACACC+CGG + chr3_2:74521783-74521802 None:intergenic 40.0%
TGAGTCTGCATTTAGTGTCT+TGG - chr3_2:74521927-74521946 Msa0424320:intron 40.0%
GAGTCTGCATTTAGTGTCTT+GGG - chr3_2:74521928-74521947 Msa0424320:intron 40.0%
!! GGTTTTATCGCTCTTCAAGA+CGG - chr3_2:74522124-74522143 Msa0424320:intron 40.0%
! AAGACGAGGATTTTCCACAT+AGG - chr3_2:74522149-74522168 Msa0424320:intron 40.0%
TAACTGCCTGTCATGCTTTA+AGG - chr3_2:74522308-74522327 Msa0424320:CDS 40.0%
GTTCTTCCTTAAAGCATGAC+AGG + chr3_2:74522317-74522336 None:intergenic 40.0%
AACACATGAGCAATTACCAG+CGG + chr3_2:74522352-74522371 None:intergenic 40.0%
! TAGATGAAAGTTTGATGGGC+TGG - chr3_2:74522485-74522504 Msa0424320:intron 40.0%
!!! CTCTACTGGTAGCTACTTTT+TGG - chr3_2:74522605-74522624 Msa0424320:intron 40.0%
GGCATGGAATTTATTGGTAG+TGG - chr3_2:74522627-74522646 Msa0424320:intron 40.0%
GCAGATGCTTTCACGATTAA+TGG + chr3_2:74522923-74522942 None:intergenic 40.0%
TCAACAATTGTTGGTGTACG+TGG - chr3_2:74523142-74523161 Msa0424320:intron 40.0%
CTAATAACTTCCTCGAGTCT+TGG + chr3_2:74523187-74523206 None:intergenic 40.0%
GGAAGATGAGTGCCTTCAAA+AGG - chr3_2:74519366-74519385 Msa0424320:three_prime_UTR 45.0%
GAACTATCAAGGCACATTCG+AGG - chr3_2:74519450-74519469 Msa0424320:three_prime_UTR 45.0%
ATTAAGACGGAACGTCGTGA+CGG - chr3_2:74519888-74519907 Msa0424320:intron 45.0%
AGAGTGAGGGATGGAGTTTA+GGG + chr3_2:74520405-74520424 None:intergenic 45.0%
AGAAAGCAACTGGACTGAGA+AGG + chr3_2:74520452-74520471 None:intergenic 45.0%
GATCATAGAGTTGAGCGAAC+AGG - chr3_2:74521053-74521072 Msa0424320:CDS 45.0%
AATTAAGGCCAGTAAGAGGC+AGG + chr3_2:74521478-74521497 None:intergenic 45.0%
TGTATTGTCCCCCCAAATCA+AGG + chr3_2:74521628-74521647 None:intergenic 45.0%
AGAAATGTGTTGCACCGCAT+TGG - chr3_2:74521744-74521763 Msa0424320:intron 45.0%
GCAGGATATCTCAACCAATG+CGG + chr3_2:74521761-74521780 None:intergenic 45.0%
! CATTGGTTGAGATATCCTGC+CGG - chr3_2:74521761-74521780 Msa0424320:intron 45.0%
ATTGGTTGAGATATCCTGCC+GGG - chr3_2:74521762-74521781 Msa0424320:intron 45.0%
ATAGGCACTCACACACTAGT+TGG + chr3_2:74522546-74522565 None:intergenic 45.0%
! TAGCGAGCTTGTTTCTCTAC+TGG - chr3_2:74522591-74522610 Msa0424320:intron 45.0%
!!! TGGTAGCTACTTTTTGGGCA+TGG - chr3_2:74522611-74522630 Msa0424320:intron 45.0%
!! CTAGTTGTCCTTTTGGTGAC+AGG - chr3_2:74522774-74522793 Msa0424320:intron 45.0%
ACAGGAGCTGAAGTAGAGAA+AGG - chr3_2:74522792-74522811 Msa0424320:intron 45.0%
ATAACTTCCTCGAGTCTTGG+CGG + chr3_2:74523184-74523203 None:intergenic 45.0%
GGAAGATGAGTGCCTTCAAA+AGG - chr3_2:74519366-74519385 Msa0424320:three_prime_UTR 45.0%
GAACTATCAAGGCACATTCG+AGG - chr3_2:74519450-74519469 Msa0424320:three_prime_UTR 45.0%
ATTAAGACGGAACGTCGTGA+CGG - chr3_2:74519888-74519907 Msa0424320:intron 45.0%
AGAGTGAGGGATGGAGTTTA+GGG + chr3_2:74520405-74520424 None:intergenic 45.0%
AGAAAGCAACTGGACTGAGA+AGG + chr3_2:74520452-74520471 None:intergenic 45.0%
GATCATAGAGTTGAGCGAAC+AGG - chr3_2:74521053-74521072 Msa0424320:CDS 45.0%
AATTAAGGCCAGTAAGAGGC+AGG + chr3_2:74521478-74521497 None:intergenic 45.0%
TGTATTGTCCCCCCAAATCA+AGG + chr3_2:74521628-74521647 None:intergenic 45.0%
AGAAATGTGTTGCACCGCAT+TGG - chr3_2:74521744-74521763 Msa0424320:intron 45.0%
GCAGGATATCTCAACCAATG+CGG + chr3_2:74521761-74521780 None:intergenic 45.0%
! CATTGGTTGAGATATCCTGC+CGG - chr3_2:74521761-74521780 Msa0424320:intron 45.0%
ATTGGTTGAGATATCCTGCC+GGG - chr3_2:74521762-74521781 Msa0424320:intron 45.0%
ATAGGCACTCACACACTAGT+TGG + chr3_2:74522546-74522565 None:intergenic 45.0%
! TAGCGAGCTTGTTTCTCTAC+TGG - chr3_2:74522591-74522610 Msa0424320:intron 45.0%
!!! TGGTAGCTACTTTTTGGGCA+TGG - chr3_2:74522611-74522630 Msa0424320:intron 45.0%
!! CTAGTTGTCCTTTTGGTGAC+AGG - chr3_2:74522774-74522793 Msa0424320:intron 45.0%
ACAGGAGCTGAAGTAGAGAA+AGG - chr3_2:74522792-74522811 Msa0424320:intron 45.0%
ATAACTTCCTCGAGTCTTGG+CGG + chr3_2:74523184-74523203 None:intergenic 45.0%
!! ATAAAGTTAAATAAAAATAT+AGG - chr3_2:74520233-74520252 Msa0424320:intron 5.0%
!! TAAAGTTAAATAAAAATATA+GGG - chr3_2:74520234-74520253 Msa0424320:intron 5.0%
!! ATAAAGTTAAATAAAAATAT+AGG - chr3_2:74520233-74520252 Msa0424320:intron 5.0%
!! TAAAGTTAAATAAAAATATA+GGG - chr3_2:74520234-74520253 Msa0424320:intron 5.0%
GAGAGTGAGGGATGGAGTTT+AGG + chr3_2:74520406-74520425 None:intergenic 50.0%
GAACGAGAGAGAGAGAGTGA+GGG + chr3_2:74520418-74520437 None:intergenic 50.0%
TGAACGAGAGAGAGAGAGTG+AGG + chr3_2:74520419-74520438 None:intergenic 50.0%
ACAAACAGCCTGCCTCTTAC+TGG - chr3_2:74521467-74521486 Msa0424320:intron 50.0%
!! GTGTTTCTGGAACTGGCATG+TGG - chr3_2:74521690-74521709 Msa0424320:intron 50.0%
AATTGCTGTAAACACCCGGC+AGG + chr3_2:74521779-74521798 None:intergenic 50.0%
TCTTCAAGACGGAGAAGACG+AGG - chr3_2:74522135-74522154 Msa0424320:intron 50.0%
!! TTGGTAGTGGGCATGCGTTA+TGG - chr3_2:74522640-74522659 Msa0424320:intron 50.0%
!! TGGTAGTGGGCATGCGTTAT+GGG - chr3_2:74522641-74522660 Msa0424320:intron 50.0%
AGGCATGGATATGCACTGCT+TGG - chr3_2:74522673-74522692 Msa0424320:intron 50.0%
CTTCAGCTCCTGTCACCAAA+AGG + chr3_2:74522785-74522804 None:intergenic 50.0%
GAGAGTGAGGGATGGAGTTT+AGG + chr3_2:74520406-74520425 None:intergenic 50.0%
GAACGAGAGAGAGAGAGTGA+GGG + chr3_2:74520418-74520437 None:intergenic 50.0%
TGAACGAGAGAGAGAGAGTG+AGG + chr3_2:74520419-74520438 None:intergenic 50.0%
ACAAACAGCCTGCCTCTTAC+TGG - chr3_2:74521467-74521486 Msa0424320:intron 50.0%
!! GTGTTTCTGGAACTGGCATG+TGG - chr3_2:74521690-74521709 Msa0424320:intron 50.0%
AATTGCTGTAAACACCCGGC+AGG + chr3_2:74521779-74521798 None:intergenic 50.0%
TCTTCAAGACGGAGAAGACG+AGG - chr3_2:74522135-74522154 Msa0424320:intron 50.0%
!! TTGGTAGTGGGCATGCGTTA+TGG - chr3_2:74522640-74522659 Msa0424320:intron 50.0%
!! TGGTAGTGGGCATGCGTTAT+GGG - chr3_2:74522641-74522660 Msa0424320:intron 50.0%
AGGCATGGATATGCACTGCT+TGG - chr3_2:74522673-74522692 Msa0424320:intron 50.0%
CTTCAGCTCCTGTCACCAAA+AGG + chr3_2:74522785-74522804 None:intergenic 50.0%
! AAGCGTCGCAAATTCCGTCC+CGG + chr3_2:74519943-74519962 None:intergenic 55.0%
GAGAGAGAGAGAGTGAGGGA+TGG + chr3_2:74520414-74520433 None:intergenic 55.0%
!! TTCTGGAACTGGCATGTGGC+AGG - chr3_2:74521694-74521713 Msa0424320:intron 55.0%
! TCTGGAACTGGCATGTGGCA+GGG - chr3_2:74521695-74521714 Msa0424320:intron 55.0%
GAACTATCCTCATGCTCCGC+TGG - chr3_2:74522333-74522352 Msa0424320:CDS 55.0%
GCAATTACCAGCGGAGCATG+AGG + chr3_2:74522343-74522362 None:intergenic 55.0%
!! GGTAGTGGGCATGCGTTATG+GGG - chr3_2:74522642-74522661 Msa0424320:intron 55.0%
! AAGCGTCGCAAATTCCGTCC+CGG + chr3_2:74519943-74519962 None:intergenic 55.0%
GAGAGAGAGAGAGTGAGGGA+TGG + chr3_2:74520414-74520433 None:intergenic 55.0%
!! TTCTGGAACTGGCATGTGGC+AGG - chr3_2:74521694-74521713 Msa0424320:intron 55.0%
! TCTGGAACTGGCATGTGGCA+GGG - chr3_2:74521695-74521714 Msa0424320:intron 55.0%
GAACTATCCTCATGCTCCGC+TGG - chr3_2:74522333-74522352 Msa0424320:CDS 55.0%
GCAATTACCAGCGGAGCATG+AGG + chr3_2:74522343-74522362 None:intergenic 55.0%
!! GGTAGTGGGCATGCGTTATG+GGG - chr3_2:74522642-74522661 Msa0424320:intron 55.0%
CTGGAACTGGCATGTGGCAG+GGG - chr3_2:74521696-74521715 Msa0424320:intron 60.0%
! TGCGTTATGGGGCTGGTGTG+AGG - chr3_2:74522653-74522672 Msa0424320:intron 60.0%
! TATGGGGCTGGTGTGAGGCA+TGG - chr3_2:74522658-74522677 Msa0424320:intron 60.0%
TTCAGCACCGCCAAGACTCG+AGG - chr3_2:74523174-74523193 Msa0424320:intron 60.0%
CTGGAACTGGCATGTGGCAG+GGG - chr3_2:74521696-74521715 Msa0424320:intron 60.0%
! TGCGTTATGGGGCTGGTGTG+AGG - chr3_2:74522653-74522672 Msa0424320:intron 60.0%
! TATGGGGCTGGTGTGAGGCA+TGG - chr3_2:74522658-74522677 Msa0424320:intron 60.0%
TTCAGCACCGCCAAGACTCG+AGG - chr3_2:74523174-74523193 Msa0424320:intron 60.0%
GTGGGCATGCGTTATGGGGC+TGG - chr3_2:74522646-74522665 Msa0424320:intron 65.0%
GTGGGCATGCGTTATGGGGC+TGG - chr3_2:74522646-74522665 Msa0424320:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 74519349 74523440 74519349 ID=Msa0424320;Name=Msa0424320
chr3_2 mRNA 74519349 74523440 74519349 ID=Msa0424320-mRNA-1;Parent=Msa0424320;Name=Msa0424320-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.5|0.55|0.88|0|0.44|9|587|149
chr3_2 exon 74519349 74519676 74519349 ID=Msa0424320-mRNA-1:exon:18837;Parent=Msa0424320-mRNA-1
chr3_2 exon 74519927 74519993 74519927 ID=Msa0424320-mRNA-1:exon:18836;Parent=Msa0424320-mRNA-1
chr3_2 exon 74520087 74520195 74520087 ID=Msa0424320-mRNA-1:exon:18835;Parent=Msa0424320-mRNA-1
chr3_2 exon 74520435 74520501 74520435 ID=Msa0424320-mRNA-1:exon:18834;Parent=Msa0424320-mRNA-1
chr3_2 exon 74520596 74520758 74520596 ID=Msa0424320-mRNA-1:exon:18833;Parent=Msa0424320-mRNA-1
chr3_2 exon 74520893 74520911 74520893 ID=Msa0424320-mRNA-1:exon:18832;Parent=Msa0424320-mRNA-1
chr3_2 exon 74521006 74521111 74521006 ID=Msa0424320-mRNA-1:exon:18831;Parent=Msa0424320-mRNA-1
chr3_2 exon 74522260 74522398 74522260 ID=Msa0424320-mRNA-1:exon:18830;Parent=Msa0424320-mRNA-1
chr3_2 exon 74523402 74523440 74523402 ID=Msa0424320-mRNA-1:exon:18829;Parent=Msa0424320-mRNA-1
chr3_2 CDS 74523402 74523440 74523402 ID=Msa0424320-mRNA-1:cds;Parent=Msa0424320-mRNA-1
chr3_2 CDS 74522260 74522398 74522260 ID=Msa0424320-mRNA-1:cds;Parent=Msa0424320-mRNA-1
chr3_2 CDS 74521006 74521111 74521006 ID=Msa0424320-mRNA-1:cds;Parent=Msa0424320-mRNA-1
chr3_2 CDS 74520893 74520911 74520893 ID=Msa0424320-mRNA-1:cds;Parent=Msa0424320-mRNA-1
chr3_2 CDS 74520612 74520758 74520612 ID=Msa0424320-mRNA-1:cds;Parent=Msa0424320-mRNA-1
chr3_2 three_prime_UTR 74520596 74520611 74520596 ID=Msa0424320-mRNA-1:three_prime_utr;Parent=Msa0424320-mRNA-1
chr3_2 three_prime_UTR 74520435 74520501 74520435 ID=Msa0424320-mRNA-1:three_prime_utr;Parent=Msa0424320-mRNA-1
chr3_2 three_prime_UTR 74520087 74520195 74520087 ID=Msa0424320-mRNA-1:three_prime_utr;Parent=Msa0424320-mRNA-1
chr3_2 three_prime_UTR 74519927 74519993 74519927 ID=Msa0424320-mRNA-1:three_prime_utr;Parent=Msa0424320-mRNA-1
chr3_2 three_prime_UTR 74519349 74519676 74519349 ID=Msa0424320-mRNA-1:three_prime_utr;Parent=Msa0424320-mRNA-1
Gene Sequence

>Msa0424320

ATGGAGGCATTTGTGCGGGAAGATGAGTGCCTTCAAAAGACGATAGATAACCCTAAACTCCATCCCTCACTCTCTCTCTCTCGTTCAATCGCTCTCTCCTTCTCAGTCCAGTTGCTTTCTTCTTCTCAGTTCAATCGATCTAAATCACTCTCTCCTTCACTGTTCTGTGCAATTTCAGGAGAATATTTTTGTGTTTCTGGAACTGGCATGTGGCAGGGGAGTAAGAATTTTGATGTCCCGTCAAAGAAATGTGTTGCACCGCATTGGTTGAGATATCCTGCCGGGTTTGTTTTCTATGTTCAGGAGTTAACGTTTAATGCGTCTTTGACAGTTATGAAAATGTTGAAGGATTTAGAGAGAACTGAAGTTTGTGATTCTTTGTTAACGATTTTGATGGGTTTTATCGCTCTTCAAGACGGAGAAGACGAGGATTTTCCACATAGGAACTAA

Protein sequence

>Msa0424320

MEAFVREDECLQKTIDNPKLHPSLSLSRSIALSFSVQLLSSSQFNRSKSLSPSLFCAISGEYFCVSGTGMWQGSKNFDVPSKKCVAPHWLRYPAGFVFYVQELTFNASLTVMKMLKDLERTEVCDSLLTILMGFIALQDGEDEDFPHRN*