AlfalfaGEDB | Msa1266040

M. sativa cultivar zhongmu-4 / Msa1266040

KEGG: K02218
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266040	XP_013458470.1	98.678	454	6	0	1	454	1	454	0.0	929

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266040	sp\|P42158\|CKL1_ARATH	73.729	472	83	7	1	453	1	450	0.0	701

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266040	A0A072UT31	98.678	454	6	0	1	454	1	454	0.0	929

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027390	Msa1266040	0.807153	5.808229e-50	-8.615850e-47
Msa0165300	Msa1266040	0.811525	6.703490e-51	-8.615850e-47
Msa0929950	Msa1266040	0.815712	8.030957e-52	-8.615850e-47
Msa1266040	Msa1307550	0.818925	1.519620e-52	-8.615850e-47
Msa1266040	Msa1410410	0.975953	6.582155e-141	-8.615850e-47
Msa1266040	Msa1454520	0.993511	3.018498e-200	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1266040	MtrunA17_Chr4g0071031	98.678	454	6	0	1	454	1	454	929
Msa1266040	MtrunA17_Chr2g0329981	76.778	478	84	7	1	454	1	475	728
Msa1266040	MtrunA17_Chr2g0299661	76.170	470	86	5	1	448	1	466	722
Msa1266040	MtrunA17_Chr8g0342821	74.895	478	92	7	1	454	1	474	705
Msa1266040	MtrunA17_Chr1g0166821	75.811	339	76	3	1	333	2	340	547
Msa1266040	MtrunA17_Chr1g0183631	71.667	360	89	4	1	360	1	347	546
Msa1266040	MtrunA17_Chr7g0261501	81.481	297	55	0	1	297	1	297	541
Msa1266040	MtrunA17_Chr1g0187571	73.591	337	83	3	1	331	2	338	531
Msa1266040	MtrunA17_Chr6g0486611	63.070	417	147	4	1	416	1	411	525
Msa1266040	MtrunA17_Chr8g0390211	68.421	361	112	2	1	360	1	360	514

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1266040	AT4G26100.1	73.729	472	83	7	1	453	1	450	701
Msa1266040	AT5G57015.1	72.961	466	82	8	1	454	1	434	685
Msa1266040	AT1G72710.1	71.915	470	103	7	1	446	1	465	660
Msa1266040	AT2G19470.1	66.520	454	103	4	1	449	1	410	605
Msa1266040	AT3G23340.1	61.556	450	147	8	1	445	1	429	546
Msa1266040	AT5G44100.1	82.155	297	53	0	1	297	1	297	545
Msa1266040	AT5G44100.2	82.155	297	53	0	1	297	1	297	545
Msa1266040	AT1G03930.1	81.818	297	54	0	1	297	1	297	545
Msa1266040	AT4G28540.1	61.276	439	138	7	1	425	5	425	529
Msa1266040	AT4G14340.1	60.954	461	148	10	1	446	7	450	528

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Find 154 sgRNAs with CRISPR-Local

Find 702 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATACAGTAACATAC+AGG	0.540468	8_2:-70762267	None:intergenic
AAACTACAATCTTCATGACT+AGG	0.602390	8_2:-70753843	None:intergenic
AAACTTACAGTATTCAAAAT+GGG	0.489433	8_2:-70759790	None:intergenic
AAATTGATAGAGCGAGATCT+AGG	0.504513	8_2:-70754186	None:intergenic
AACTATGAAAGTGCCCTTAG+GGG	0.645280	8_2:+70761973	Msa1266040:CDS
AAGATCGGTAGTGGTTCCTT+TGG	0.414217	8_2:+70754429	Msa1266040:CDS
AAGGGCACTTTCATAGTTAG+TGG	0.388491	8_2:-70761968	None:intergenic
AAGTATGATGCAAATTCGGT+TGG	0.569583	8_2:-70758713	None:intergenic
AAGTTGTACAGAATTCTCCA+GGG	0.726240	8_2:+70755569	Msa1266040:CDS
AATAGTCATTACTTCCTCCC+TGG	0.548168	8_2:-70755586	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTACAATCTTCATGACT+AGG	-	chr8_2:70753846-70753865	None:intergenic	30.0%
TAGCCTATTATTTCAAAGCA+TGG	-	chr8_2:70755064-70755083	None:intergenic	30.0%
AATGTTACCCATAAGTTGTA+TGG	+	chr8_2:70755132-70755151	Msa1266040:intron	30.0%
ACATGATCCATACAACTTAT+GGG	-	chr8_2:70755142-70755161	None:intergenic	30.0%
TCATCACAATCATGAATTGA+GGG	-	chr8_2:70755325-70755344	None:intergenic	30.0%
TTCATCACAATCATGAATTG+AGG	-	chr8_2:70755326-70755345	None:intergenic	30.0%
TGAATAATATCTTTGGTTGG+GGG	+	chr8_2:70755342-70755361	Msa1266040:intron	30.0%
TGACTTAACATTATGAGGAT+TGG	+	chr8_2:70755400-70755419	Msa1266040:intron	30.0%
AAAGGCTAAGACAATGAATA+TGG	-	chr8_2:70755613-70755632	None:intergenic	30.0%
ATTCCAAATGTTAGATGGTT+TGG	+	chr8_2:70755706-70755725	Msa1266040:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	70753806	70762553	70753806	ID=Msa1266040;Name=Msa1266040
chr8_2	mRNA	70753806	70762553	70753806	ID=Msa1266040-mRNA-1;Parent=Msa1266040;Name=Msa1266040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=584\|1\|1\|1\|1\|1\|14\|512\|454
chr8_2	exon	70753806	70754465	70753806	ID=Msa1266040-mRNA-1:exon:23500;Parent=Msa1266040-mRNA-1
chr8_2	exon	70754556	70754596	70754556	ID=Msa1266040-mRNA-1:exon:23501;Parent=Msa1266040-mRNA-1
chr8_2	exon	70755527	70755596	70755527	ID=Msa1266040-mRNA-1:exon:23502;Parent=Msa1266040-mRNA-1
chr8_2	exon	70755701	70755849	70755701	ID=Msa1266040-mRNA-1:exon:23503;Parent=Msa1266040-mRNA-1
chr8_2	exon	70755939	70756034	70755939	ID=Msa1266040-mRNA-1:exon:23504;Parent=Msa1266040-mRNA-1
chr8_2	exon	70756133	70756203	70756133	ID=Msa1266040-mRNA-1:exon:23505;Parent=Msa1266040-mRNA-1
chr8_2	exon	70758218	70758279	70758218	ID=Msa1266040-mRNA-1:exon:23506;Parent=Msa1266040-mRNA-1
chr8_2	exon	70758380	70758443	70758380	ID=Msa1266040-mRNA-1:exon:23507;Parent=Msa1266040-mRNA-1
chr8_2	exon	70758520	70758604	70758520	ID=Msa1266040-mRNA-1:exon:23508;Parent=Msa1266040-mRNA-1
chr8_2	exon	70758695	70758821	70758695	ID=Msa1266040-mRNA-1:exon:23509;Parent=Msa1266040-mRNA-1
chr8_2	exon	70758969	70759051	70758969	ID=Msa1266040-mRNA-1:exon:23510;Parent=Msa1266040-mRNA-1
chr8_2	exon	70759141	70759204	70759141	ID=Msa1266040-mRNA-1:exon:23511;Parent=Msa1266040-mRNA-1
chr8_2	exon	70759728	70759804	70759728	ID=Msa1266040-mRNA-1:exon:23512;Parent=Msa1266040-mRNA-1
chr8_2	exon	70761742	70762553	70761742	ID=Msa1266040-mRNA-1:exon:23513;Parent=Msa1266040-mRNA-1
chr8_2	five_prime_UTR	70753806	70754389	70753806	ID=Msa1266040-mRNA-1:five_prime_utr;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70754390	70754465	70754390	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70754556	70754596	70754556	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70755527	70755596	70755527	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70755701	70755849	70755701	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70755939	70756034	70755939	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70756133	70756203	70756133	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70758218	70758279	70758218	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70758380	70758443	70758380	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70758520	70758604	70758520	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70758695	70758821	70758695	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70758969	70759051	70758969	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70759141	70759204	70759141	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70759728	70759804	70759728	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	CDS	70761742	70762041	70761742	ID=Msa1266040-mRNA-1:cds;Parent=Msa1266040-mRNA-1
chr8_2	three_prime_UTR	70762042	70762553	70762042	ID=Msa1266040-mRNA-1:three_prime_utr;Parent=Msa1266040-mRNA-1

Gene Sequence

>Msa1266040

ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTTGGTAGGAAGATCGGTAGTGGTTCCTTTGGGGAGATCTACTTAGGTACTAATATTCAAACTAACGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACTAAGCATCCTCAGCTGCTGTACGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTAGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGTAGTAGAAAGTTATCACTAAAAACAGTTCTTATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCGAAATCATTTCTACATCGAGATATCAAACCGGATAATTTTCTAATGGGATTAGGAAGGCGTGCGAACCAGGTTTATGCTATTGATTTTGGTCTGGCTAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAAAATTTGACCGGAACTGCAAGATACGCTAGCATGAATACTCACCTTGGCATTGAACAAAGTCGAAGAGATGATTTAGAGTCTCTTGGTTATGTTTTGATGTACTTCCTGAGAGGGAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACCAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAGGTTTCTACATCGATTGAAGCCTTATGTCGGGGTTATCCAACCGAATTTGCATCATACTTCCATTACTGTCGCTCATTAAGGTTTGATGATAAGCCAGATTATGCTTATCTCAAAAGGATATTCCGCGACCTGTTTATCCGTGAAGGATTCCAGTTTGATTATGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAGCTTGCTACACCTCCAGCACGGGGAATTGTTCCTGGTGCTGGAACCAGTTCTGCAATGCCACCTGCTGTTACCAGTGCTGATAGACATACAGGAGCAGAAGGGCAACCCCCTGGTTTGGTTTCGGTGGATTCCTCTAGGCGCAGAATGTCGGGACCCATTTTGAATACTTTATCAAGTTCCAATGTCTTGGGTCAATCAAGTGGATCATCTAGGCGAGTTGCTGTTTCTAGTAGTCGTGATGCATTTGTTGGTGCTGAGTCAGATGTTCGTACACGCACTGCTGAGGCTAGCCCTGGAGCAGCAGCACATAGAATTTTGAGCGGTCAAAGAAGTTCACCAATCGGATCTTCTGATCCCCAGAGAGTAGCACGGTCTGGGAGAAATGCTTCTCAAGCCACTAACTATGAAAGTGCCCTTAGGGGCATGGACGGTTTGCAGTTAGAAAATGATGAGAGAACCCATTATTAA

Protein sequence

>Msa1266040

MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARGIVPGAGTSSAMPPAVTSADRHTGAEGQPPGLVSVDSSRRRMSGPILNTLSSSNVLGQSSGSSRRVAVSSSRDAFVGAESDVRTRTAEASPGAAAHRILSGQRSSPIGSSDPQRVARSGRNASQATNYESALRGMDGLQLENDERTHY*