AlfalfaGEDB | Msa1266160

M. sativa cultivar zhongmu-4 / Msa1266160

KEGG: K20603
GO: GO:0000165 GO:0000187 GO:0001932 GO:0001934 GO:0002376 GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009628 GO:0009631 GO:0009651 GO:0009814 GO:0009893 GO:0009914 GO:0009966 GO:0009967 GO:0009987 GO:0010051 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1902531 GO:1902533
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266160	XP_013458448.1	100.000	356	0	0	1	356	1	356	0.0	738

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266160	sp\|Q9S7U9\|M2K2_ARATH	68.820	356	109	1	1	356	1	354	0.0	526

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0271910	Msa1266160	0.813228	2.847027e-51	-8.615850e-47
Msa0310880	Msa1266160	0.812937	3.297650e-51	-8.615850e-47
Msa0662530	Msa1266160	0.937004	6.990629e-98	-8.615850e-47
Msa1220920	Msa1266160	0.934933	1.871816e-96	-8.615850e-47
Msa1266160	Msa1404280	0.933391	2.015602e-95	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266160	MtrunA17_Chr4g0070851	100.000	356	0	0	1	356	1	356	0.0	738
Msa1266160	MtrunA17_Chr2g0299991	76.536	358	82	1	1	356	1	358	0.0	582
Msa1266160	MtrunA17_Chr6g0487231	60.360	333	129	2	10	342	10	339	1.39e-153	436
Msa1266160	MtrunA17_Chr6g0449691	42.183	339	173	7	28	352	31	360	1.25e-77	247
Msa1266160	MtrunA17_Chr6g0479211	42.446	278	150	6	60	332	46	318	3.74e-64	206
Msa1266160	MtrunA17_Chr4g0000481	43.382	272	139	8	65	332	79	339	6.26e-64	207
Msa1266160	MtrunA17_Chr2g0317001	37.308	260	153	4	73	332	18	267	7.97e-45	163
Msa1266160	MtrunA17_Chr3g0140631	34.328	268	161	7	67	332	34	288	5.65e-39	140
Msa1266160	MtrunA17_Chr5g0419441	33.083	266	168	5	71	335	240	496	6.05e-38	144
Msa1266160	MtrunA17_Chr8g0351491	31.047	277	176	7	59	333	5	268	1.36e-37	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266160	AT4G29810.1	68.820	356	109	1	1	356	1	354	0.0	526
Msa1266160	AT4G29810.2	67.123	365	109	2	1	356	1	363	0.0	517
Msa1266160	AT4G29810.3	67.857	336	97	2	1	327	1	334	1.89e-171	481
Msa1266160	AT4G26070.2	63.966	358	122	4	1	355	1	354	1.81e-170	479
Msa1266160	AT4G26070.3	63.966	358	122	4	1	355	1	354	1.81e-170	479
Msa1266160	AT4G26070.5	66.566	332	106	2	27	355	12	341	3.57e-167	470
Msa1266160	AT4G26070.4	66.465	331	106	2	27	354	24	352	1.51e-166	469
Msa1266160	AT5G56580.1	59.238	341	134	4	3	342	5	341	7.45e-152	432
Msa1266160	AT4G26070.1	65.484	310	103	3	1	310	1	306	2.87e-151	428
Msa1266160	AT5G40440.5	45.486	288	145	5	72	356	3	281	4.84e-77	244

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Find 112 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATATATGGAGTTT+GGG	0.399913	8_2:-70905655	Msa1266160:CDS
AAACGGAGGGGTGGTTCAAT+TGG	0.436890	8_2:-70907550	Msa1266160:CDS
AAAGCAACTTGATCAGTTTG+AGG	0.491651	8_2:+70908941	None:intergenic
AAAGTTGTTGGAAAGGGAAA+CGG	0.543556	8_2:-70907567	Msa1266160:CDS
AACAGACAACCAGTTAAGTT+TGG	0.402107	8_2:-70907607	Msa1266160:CDS
AAGAAAGGAAATTTGGGTCT+CGG	0.491021	8_2:-70908980	Msa1266160:CDS
AATCACTAAATAACATAATA+CGG	0.477435	8_2:+70904324	None:intergenic
AATCATGAAGAAAGGAAATT+TGG	0.159935	8_2:-70908987	Msa1266160:exon
AATTATCCTCATTTCGTCAA+TGG	0.379431	8_2:-70909241	Msa1266160:five_prime_UTR
AATTGTTCAGATGGAGCACT+AGG	0.573493	8_2:+70905520	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGAAATGAGGATAATTAGA+AGG	+	chr8_2:70904121-70904140	None:intergenic	30.0%
AATTATCCTCATTTCGTCAA+TGG	-	chr8_2:70904124-70904143	Msa1266160:three_prime_UTR	30.0%
CAAACTAAAATTCCCCAATT+GGG	+	chr8_2:70904782-70904801	None:intergenic	30.0%
TATGTTTGGATCGATGATAT+AGG	-	chr8_2:70905235-70905254	Msa1266160:intron	30.0%
ATGTTTGGATCGATGATATA+GGG	-	chr8_2:70905236-70905255	Msa1266160:intron	30.0%
TGAAATGGTATGAAATAGTC+TGG	-	chr8_2:70905265-70905284	Msa1266160:intron	30.0%
CAAAACTTACAAGTTTATGG+TGG	+	chr8_2:70905389-70905408	None:intergenic	30.0%
TATACATGAACATGTTAACG+AGG	-	chr8_2:70905514-70905533	Msa1266160:CDS	30.0%
ATGTGACCAAAAAATAAAGC+AGG	+	chr8_2:70905650-70905669	None:intergenic	30.0%
TTTGGTCACATTACATGTAT+TGG	-	chr8_2:70905659-70905678	Msa1266160:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	70903991	70909396	70903991	ID=Msa1266160;Name=Msa1266160
chr8_2	mRNA	70903991	70909396	70903991	ID=Msa1266160-mRNA-1;Parent=Msa1266160;Name=Msa1266160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=391\|1\|1\|1\|0.87\|0.88\|9\|434\|356
chr8_2	exon	70903991	70904418	70903991	ID=Msa1266160-mRNA-1:exon:23662;Parent=Msa1266160-mRNA-1
chr8_2	exon	70904836	70904931	70904836	ID=Msa1266160-mRNA-1:exon:23661;Parent=Msa1266160-mRNA-1
chr8_2	exon	70905010	70905055	70905010	ID=Msa1266160-mRNA-1:exon:23660;Parent=Msa1266160-mRNA-1
chr8_2	exon	70905487	70905716	70905487	ID=Msa1266160-mRNA-1:exon:23659;Parent=Msa1266160-mRNA-1
chr8_2	exon	70905812	70905994	70905812	ID=Msa1266160-mRNA-1:exon:23658;Parent=Msa1266160-mRNA-1
chr8_2	exon	70906094	70906318	70906094	ID=Msa1266160-mRNA-1:exon:23657;Parent=Msa1266160-mRNA-1
chr8_2	exon	70907512	70907646	70907512	ID=Msa1266160-mRNA-1:exon:23656;Parent=Msa1266160-mRNA-1
chr8_2	exon	70908739	70908823	70908739	ID=Msa1266160-mRNA-1:exon:23655;Parent=Msa1266160-mRNA-1
chr8_2	exon	70908929	70909396	70908929	ID=Msa1266160-mRNA-1:exon:23654;Parent=Msa1266160-mRNA-1
chr8_2	five_prime_UTR	70909006	70909396	70909006	ID=Msa1266160-mRNA-1:five_prime_utr;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70908929	70909005	70908929	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70908739	70908823	70908739	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70907512	70907646	70907512	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70906094	70906318	70906094	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70905812	70905994	70905812	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70905487	70905716	70905487	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70905010	70905055	70905010	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	CDS	70904842	70904931	70904842	ID=Msa1266160-mRNA-1:cds;Parent=Msa1266160-mRNA-1
chr8_2	three_prime_UTR	70904836	70904841	70904836	ID=Msa1266160-mRNA-1:three_prime_utr;Parent=Msa1266160-mRNA-1
chr8_2	three_prime_UTR	70903991	70904418	70903991	ID=Msa1266160-mRNA-1:three_prime_utr;Parent=Msa1266160-mRNA-1

Gene Sequence

>Msa1266160

ATGAAGAAAGGAAATTTGGGTCTCGGTCTCAAACTCTCTGTTCCTCAAACTGATCAAGTTGCTTTTGCAAAGTTTCTGACTGAAAGTGGAACGTTTAAGGATGGAGATCTGCTTGTTAACAGAGACGGTGTTCGAATTGTTTCTGAGACTGAAGTTGAAGCTCCACCCCCAATCAAGGCAACAGACAACCAGTTAAGTTTGGCAGACATAGACATAGTGAAAGTTGTTGGAAAGGGAAACGGAGGGGTGGTTCAATTGGTGCAACACAAATGGACTAATCAGTTTTTTGCATTAAAGATAATTCAAATGAATATTGAAGAGTCCGTGCGCAAGCAGATAGCTAAAGAGCTGAAAATTAATCAAGCAGCACAGTGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTATGACAACGGTGTCATATCAATCATTTTAGAGTACATGGATGGAGGCTCCATGGCTGATCTTCTGAAGAAAGTTAAAACAATACCAGAGCCTTATCTTTCTGCCATTTGTAAGCAGGTTCTGAAGGGTTTAATATATCTTCACCATGAAAGACATATTATCCACAGAGACTTGAAGCCTTCTAATTTGTTGATCAATCACACAGGCGAGGTTAAGATTACTGATTTTGGTGTTAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAACGTGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTGATATTGCTGGAGTGTGCTATGGGGCGGTTTCCTTACACACCACCAGATCAAAGTGAAAGATGGGAAAGTATATTTGAGCTTATTGAAACTATTGTGGATAAACCTCCTCCTAGTGCTCCATCTGAACAATTTTCCTCAGAATTTTGCTCATTTATCTCTGCATGTCTACAGAAAGACCCAGGAAGCAGACTGTCGGCTCAGGAACTTATGGAACTTCCTTTCATCAGCATGTATGATGACTTGCATGTGGATCTCTCAGCTTATTTCTCCGATGCAGGATCTCCACTCGCAACCTTATAA

Protein sequence

>Msa1266160

MKKGNLGLGLKLSVPQTDQVAFAKFLTESGTFKDGDLLVNRDGVRIVSETEVEAPPPIKATDNQLSLADIDIVKVVGKGNGGVVQLVQHKWTNQFFALKIIQMNIEESVRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSMADLLKKVKTIPEPYLSAICKQVLKGLIYLHHERHIIHRDLKPSNLLINHTGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECAMGRFPYTPPDQSERWESIFELIETIVDKPPPSAPSEQFSSEFCSFISACLQKDPGSRLSAQELMELPFISMYDDLHVDLSAYFSDAGSPLATL*