AlfalfaGEDB | Msa1266780

M. sativa cultivar zhongmu-4 / Msa1266780

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266780	XP_003609876.1	96.364	385	13	1	1	384	1	385	0.0	756

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266780	sp\|Q8RWC9\|CIPK1_ARATH	72.826	368	97	2	19	384	13	379	0.0	537

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266780	G7JR06	96.364	385	13	1	1	384	1	385	0.0	756

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1011130	Msa1266780	0.946087	8.989213e-105	-8.615850e-47
Msa1219520	Msa1266780	0.896423	3.742723e-76	-8.615850e-47
Msa1266780	Msa1266790	0.958784	9.968421e-117	-8.615850e-47
Msa1266780	Msa1409350	0.894827	1.709889e-75	-8.615850e-47
Msa1266780	Msa1415130	0.883731	3.500787e-71	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266780	MtrunA17_Chr4g0069301	96.364	385	13	1	1	384	1	385	0.0	756
Msa1266780	MtrunA17_Chr2g0302431	74.677	387	88	3	1	384	1	380	0.0	573
Msa1266780	MtrunA17_Chr5g0441011	54.795	365	162	2	22	384	9	372	6.25e-145	418
Msa1266780	MtrunA17_Chr2g0304111	52.533	375	170	4	17	384	14	387	3.70e-140	407
Msa1266780	MtrunA17_Chr5g0428031	50.815	368	174	4	22	384	5	370	8.58e-135	393
Msa1266780	MtrunA17_Chr8g0346081	50.411	365	178	2	21	384	12	374	3.60e-134	391
Msa1266780	MtrunA17_Chr8g0346071	49.731	372	183	3	14	384	5	373	5.94e-132	385
Msa1266780	MtrunA17_Chr4g0063881	48.641	368	182	4	22	384	7	372	1.86e-131	384
Msa1266780	MtrunA17_Chr4g0013131	48.907	366	180	3	21	382	7	369	3.63e-122	361
Msa1266780	MtrunA17_Chr7g0244521	48.378	370	181	5	21	382	7	374	4.37e-122	361

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266780	AT3G17510.1	72.826	368	97	2	19	384	13	379	0.0	537
Msa1266780	AT1G48260.1	66.033	368	123	1	19	386	4	369	1.49e-178	504
Msa1266780	AT3G17510.2	72.483	298	79	2	89	384	3	299	6.37e-150	429
Msa1266780	AT2G26980.1	55.464	366	160	2	22	385	10	374	9.16e-149	426
Msa1266780	AT1G30270.1	54.839	372	160	3	23	387	28	398	2.98e-147	426
Msa1266780	AT1G30270.2	54.717	371	162	2	23	387	28	398	3.82e-147	426
Msa1266780	AT2G26980.3	55.068	365	161	2	22	384	10	373	5.61e-147	424
Msa1266780	AT2G26980.4	55.068	365	161	2	22	384	20	383	6.73e-147	424
Msa1266780	AT2G26980.5	55.068	365	161	2	22	384	10	373	1.22e-146	422
Msa1266780	AT5G21326.1	54.521	365	163	2	22	384	9	372	3.23e-145	419

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Find 94 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGAATAACAATGGC+AGG	0.504082	8_2:-71806767	Msa1266780:CDS
AAAAGAGAAAAGCAGAACCA+CGG	0.645439	8_2:-71810563	Msa1266780:five_prime_UTR
AAAATGGTGATATTGAACCT+TGG	0.528261	8_2:-71810437	Msa1266780:CDS
AAACCAAAATGGTTATCAGC+TGG	0.549443	8_2:-71806830	Msa1266780:CDS
AAACCAGAATAACAATGGCA+GGG	0.627459	8_2:-71806766	Msa1266780:CDS
AAAGAACCTTGAGATCCCTG+TGG	0.720818	8_2:+71807676	None:intergenic
AAAGAGAAAAGCAGAACCAC+GGG	0.564521	8_2:-71810562	Msa1266780:five_prime_UTR
AAATGGTGATATTGAACCTT+GGG	0.445350	8_2:-71810436	Msa1266780:CDS
AAGAAGTTGCATAGTGGAGA+AGG	0.464914	8_2:-71810398	Msa1266780:CDS
AAGAGAAAAGCAGAACCACG+GGG	0.764742	8_2:-71810561	Msa1266780:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGGTAGATAGATAAGACAA+CGG	+	chr8_2:71806149-71806168	None:intergenic	30.0%
TAACGCATGAATAACACAAT+AGG	+	chr8_2:71806168-71806187	None:intergenic	30.0%
AAAATGGTGATATTGAACCT+TGG	-	chr8_2:71806321-71806340	Msa1266780:intron	30.0%
AAATGGTGATATTGAACCTT+GGG	-	chr8_2:71806322-71806341	Msa1266780:intron	30.0%
TTTGCTTATAATAATGTCGG+AGG	-	chr8_2:71806821-71806840	Msa1266780:CDS	30.0%
TTGCTTATAATAATGTCGGA+GGG	-	chr8_2:71806822-71806841	Msa1266780:CDS	30.0%
GAGATCCAAAAATAATCAGA+TGG	+	chr8_2:71807316-71807335	None:intergenic	30.0%
AATAAATCCATAGCGCATTT+GGG	+	chr8_2:71807353-71807372	None:intergenic	30.0%
AAATAAATCCATAGCGCATT+TGG	+	chr8_2:71807354-71807373	None:intergenic	30.0%
TGAGATTATTGACATGTGAT+AGG	-	chr8_2:71807399-71807418	Msa1266780:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	71806006	71810774	71806006	ID=Msa1266780;Name=Msa1266780
chr8_2	mRNA	71806006	71810774	71806006	ID=Msa1266780-mRNA-1;Parent=Msa1266780;Name=Msa1266780-mRNA-1;_AED=0.33;_eAED=0.33;_QI=318\|1\|1\|1\|1\|1\|9\|56\|391
chr8_2	exon	71806006	71806205	71806006	ID=Msa1266780-mRNA-1:exon:24141;Parent=Msa1266780-mRNA-1
chr8_2	exon	71806341	71806448	71806341	ID=Msa1266780-mRNA-1:exon:24140;Parent=Msa1266780-mRNA-1
chr8_2	exon	71806664	71806873	71806664	ID=Msa1266780-mRNA-1:exon:24139;Parent=Msa1266780-mRNA-1
chr8_2	exon	71806974	71807153	71806974	ID=Msa1266780-mRNA-1:exon:24138;Parent=Msa1266780-mRNA-1
chr8_2	exon	71807245	71807325	71807245	ID=Msa1266780-mRNA-1:exon:24137;Parent=Msa1266780-mRNA-1
chr8_2	exon	71807683	71807790	71807683	ID=Msa1266780-mRNA-1:exon:24136;Parent=Msa1266780-mRNA-1
chr8_2	exon	71807882	71807953	71807882	ID=Msa1266780-mRNA-1:exon:24135;Parent=Msa1266780-mRNA-1
chr8_2	exon	71809540	71809602	71809540	ID=Msa1266780-mRNA-1:exon:24134;Parent=Msa1266780-mRNA-1
chr8_2	exon	71810247	71810774	71810247	ID=Msa1266780-mRNA-1:exon:24133;Parent=Msa1266780-mRNA-1
chr8_2	five_prime_UTR	71810457	71810774	71810457	ID=Msa1266780-mRNA-1:five_prime_utr;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71810247	71810456	71810247	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71809540	71809602	71809540	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71807882	71807953	71807882	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71807683	71807790	71807683	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71807245	71807325	71807245	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71806974	71807153	71806974	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71806664	71806873	71806664	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71806341	71806448	71806341	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	CDS	71806062	71806205	71806062	ID=Msa1266780-mRNA-1:cds;Parent=Msa1266780-mRNA-1
chr8_2	three_prime_UTR	71806006	71806061	71806006	ID=Msa1266780-mRNA-1:three_prime_utr;Parent=Msa1266780-mRNA-1

Gene Sequence

>Msa1266780

ATGGTGATATTGAACCTTGGGAAGAAGCAGAGTAAGAAGAAGTTGCATAGTGGAGAAGGAGTGAGACTTGGAAAATATGAGCTGGGTAGGACTCTTGGTGAGGGCAATTTTGGTAAAGTCAAATTTGCTAGGAACACTGATTCTGGACATCCTTATGCTATTAAGATTATTGACAAGAACAGGATCATTGATCTCAATATCACAAACCAGATAAAGAGGGAAATATGTGCCTTGAAGCTCCTAAGGCATCCCAATGTTGTTAAATTATACGAGGTCTTAGCTAGCAAAACAAAAATTTACATGGTACTTGAGTACGTGACAGGAGAGGAGTTATTTGACAAAATAGCTTCCAAGGGTAAACTTACTGAAGGTGAAGGTAGAAAATTGTTCCAACAGTTGATTGATGGTGTGAGCTACTGCCACAGTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTTGTGGATGCCAAAGGGAATCTAAAGATAACTGATTTTGGTCTTAGTGCTTTACCCCAACAATTTAGGGCAGATGGGTTGTTGCATACAACATGTGGAAGTGCAAATTATGTTGCACCAGAGATTCTTGCTAATAGGGGCTATAATGGTGCATCATCAGATGTATGGTCATGTGGTGTTATCTTGTATGTAGTCTTAACAGGATTCCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAGAAGGTTTTGAAAGGAGATTTTCAGAAACCAAAATGGTTATCAGCTGGTGCACAAAACATTATAAAGAGGATTCTTGATCCCAACCCTAAAACCAGAATAACAATGGCAGGGATCAAAGAAGATTTGTGGTTCAAGGAAGGATATCAAGCAGATCACGAGGACGAGGAAGACAATGTATATGTTGACGATCAAGCCTTTAACATCCATGAATTGTCACAGGAAGAAGAAAAGAGTAGTTCAGGATCACCAATTCGTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTATCTGAGAGGAAGATAAGGTTTACAACTAATCTTTCAGCCAAAGATCTGATGGAGAAGATTGAAGATTCTGTGACAGAAATGGAATTTAGAGTTCAAAAGAAAAATGGCAAAGTTAGTAGTACTATTGCTGATATTTAG

Protein sequence

>Msa1266780

MVILNLGKKQSKKKLHSGEGVRLGKYELGRTLGEGNFGKVKFARNTDSGHPYAIKIIDKNRIIDLNITNQIKREICALKLLRHPNVVKLYEVLASKTKIYMVLEYVTGEELFDKIASKGKLTEGEGRKLFQQLIDGVSYCHSKGVFHRDLKLENVLVDAKGNLKITDFGLSALPQQFRADGLLHTTCGSANYVAPEILANRGYNGASSDVWSCGVILYVVLTGFLPFDDRNLAVLYQKVLKGDFQKPKWLSAGAQNIIKRILDPNPKTRITMAGIKEDLWFKEGYQADHEDEEDNVYVDDQAFNIHELSQEEEKSSSGSPIRINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTTNLSAKDLMEKIEDSVTEMEFRVQKKNGKVSSTIADI*