AlfalfaGEDB | Msa1266790

M. sativa cultivar zhongmu-4 / Msa1266790

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266790	XP_003609876.1	96.364	385	13	1	1	384	1	385	0.0	756

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266790	sp\|Q8RWC9\|CIPK1_ARATH	72.826	368	97	2	19	384	13	379	0.0	537

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266790	G7JR06	96.364	385	13	1	1	384	1	385	0.0	756

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0227510	Msa1266790	0.807688	4.474117e-50	-8.615850e-47
Msa0276920	Msa1266790	0.801990	6.937341e-49	-8.615850e-47
Msa0289400	Msa1266790	0.801107	1.052407e-48	-8.615850e-47
Msa0505060	Msa1266790	0.802275	6.060010e-49	-8.615850e-47
Msa0893810	Msa1266790	0.804486	2.110946e-49	-8.615850e-47
Msa0908170	Msa1266790	0.804336	2.268524e-49	-8.615850e-47
Msa0959010	Msa1266790	0.800972	1.121581e-48	-8.615850e-47
Msa0993530	Msa1266790	0.815076	1.112684e-51	-8.615850e-47
Msa1011130	Msa1266790	0.923090	4.194578e-89	-8.615850e-47
Msa1032170	Msa1266790	0.821085	4.869538e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266790	MtrunA17_Chr4g0069301	96.364	385	13	1	1	384	1	385	0.0	756
Msa1266790	MtrunA17_Chr2g0302431	74.677	387	88	3	1	384	1	380	0.0	573
Msa1266790	MtrunA17_Chr5g0441011	54.795	365	162	2	22	384	9	372	6.25e-145	418
Msa1266790	MtrunA17_Chr2g0304111	52.533	375	170	4	17	384	14	387	3.70e-140	407
Msa1266790	MtrunA17_Chr5g0428031	50.815	368	174	4	22	384	5	370	8.58e-135	393
Msa1266790	MtrunA17_Chr8g0346081	50.411	365	178	2	21	384	12	374	3.60e-134	391
Msa1266790	MtrunA17_Chr8g0346071	49.731	372	183	3	14	384	5	373	5.94e-132	385
Msa1266790	MtrunA17_Chr4g0063881	48.641	368	182	4	22	384	7	372	1.86e-131	384
Msa1266790	MtrunA17_Chr4g0013131	48.907	366	180	3	21	382	7	369	3.63e-122	361
Msa1266790	MtrunA17_Chr7g0244521	48.378	370	181	5	21	382	7	374	4.37e-122	361

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266790	AT3G17510.1	72.826	368	97	2	19	384	13	379	0.0	537
Msa1266790	AT1G48260.1	66.033	368	123	1	19	386	4	369	1.49e-178	504
Msa1266790	AT3G17510.2	72.483	298	79	2	89	384	3	299	6.37e-150	429
Msa1266790	AT2G26980.1	55.464	366	160	2	22	385	10	374	9.16e-149	426
Msa1266790	AT1G30270.1	54.839	372	160	3	23	387	28	398	2.98e-147	426
Msa1266790	AT1G30270.2	54.717	371	162	2	23	387	28	398	3.82e-147	426
Msa1266790	AT2G26980.3	55.068	365	161	2	22	384	10	373	5.61e-147	424
Msa1266790	AT2G26980.4	55.068	365	161	2	22	384	20	383	6.73e-147	424
Msa1266790	AT2G26980.5	55.068	365	161	2	22	384	10	373	1.22e-146	422
Msa1266790	AT5G21326.1	54.521	365	163	2	22	384	9	372	3.23e-145	419

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Find 94 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGAATAACAATGGC+AGG	0.504082	8_2:-71818445	Msa1266790:CDS
AAAAGAGAAAAGCAGAACCA+CGG	0.645439	8_2:-71822241	Msa1266790:five_prime_UTR
AAAATGGTGATATTGAACCT+TGG	0.528261	8_2:-71822115	Msa1266790:CDS
AAACCAAAATGGTTATCAGC+TGG	0.549443	8_2:-71818508	Msa1266790:CDS
AAACCAGAATAACAATGGCA+GGG	0.627459	8_2:-71818444	Msa1266790:CDS
AAAGAACCTTGAGATCCCTG+TGG	0.720818	8_2:+71819354	None:intergenic
AAAGAGAAAAGCAGAACCAC+GGG	0.564521	8_2:-71822240	Msa1266790:five_prime_UTR
AAATGGTGATATTGAACCTT+GGG	0.445350	8_2:-71822114	Msa1266790:CDS
AAGAAGTTGCATAGTGGAGA+AGG	0.464914	8_2:-71822076	Msa1266790:CDS
AAGAGAAAAGCAGAACCACG+GGG	0.764742	8_2:-71822239	Msa1266790:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGGTAGATAGATAAGACAA+CGG	+	chr8_2:71817827-71817846	None:intergenic	30.0%
TAACGCATGAATAACACAAT+AGG	+	chr8_2:71817846-71817865	None:intergenic	30.0%
AAAATGGTGATATTGAACCT+TGG	-	chr8_2:71817999-71818018	Msa1266790:intron	30.0%
AAATGGTGATATTGAACCTT+GGG	-	chr8_2:71818000-71818019	Msa1266790:intron	30.0%
TTTGCTTATAATAATGTCGG+AGG	-	chr8_2:71818499-71818518	Msa1266790:CDS	30.0%
TTGCTTATAATAATGTCGGA+GGG	-	chr8_2:71818500-71818519	Msa1266790:CDS	30.0%
GAGATCCAAAAATAATCAGA+TGG	+	chr8_2:71818994-71819013	None:intergenic	30.0%
AATAAATCCATAGCGCATTT+GGG	+	chr8_2:71819031-71819050	None:intergenic	30.0%
AAATAAATCCATAGCGCATT+TGG	+	chr8_2:71819032-71819051	None:intergenic	30.0%
TGAGATTATTGACATGTGAT+AGG	-	chr8_2:71819077-71819096	Msa1266790:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	71817684	71822452	71817684	ID=Msa1266790;Name=Msa1266790
chr8_2	mRNA	71817684	71822452	71817684	ID=Msa1266790-mRNA-1;Parent=Msa1266790;Name=Msa1266790-mRNA-1;_AED=0.33;_eAED=0.33;_QI=318\|1\|1\|1\|1\|1\|9\|56\|391
chr8_2	exon	71817684	71817883	71817684	ID=Msa1266790-mRNA-1:exon:24150;Parent=Msa1266790-mRNA-1
chr8_2	exon	71818019	71818126	71818019	ID=Msa1266790-mRNA-1:exon:24149;Parent=Msa1266790-mRNA-1
chr8_2	exon	71818342	71818551	71818342	ID=Msa1266790-mRNA-1:exon:24148;Parent=Msa1266790-mRNA-1
chr8_2	exon	71818652	71818831	71818652	ID=Msa1266790-mRNA-1:exon:24147;Parent=Msa1266790-mRNA-1
chr8_2	exon	71818923	71819003	71818923	ID=Msa1266790-mRNA-1:exon:24146;Parent=Msa1266790-mRNA-1
chr8_2	exon	71819361	71819468	71819361	ID=Msa1266790-mRNA-1:exon:24145;Parent=Msa1266790-mRNA-1
chr8_2	exon	71819560	71819631	71819560	ID=Msa1266790-mRNA-1:exon:24144;Parent=Msa1266790-mRNA-1
chr8_2	exon	71821218	71821280	71821218	ID=Msa1266790-mRNA-1:exon:24143;Parent=Msa1266790-mRNA-1
chr8_2	exon	71821925	71822452	71821925	ID=Msa1266790-mRNA-1:exon:24142;Parent=Msa1266790-mRNA-1
chr8_2	five_prime_UTR	71822135	71822452	71822135	ID=Msa1266790-mRNA-1:five_prime_utr;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71821925	71822134	71821925	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71821218	71821280	71821218	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71819560	71819631	71819560	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71819361	71819468	71819361	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71818923	71819003	71818923	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71818652	71818831	71818652	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71818342	71818551	71818342	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71818019	71818126	71818019	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	CDS	71817740	71817883	71817740	ID=Msa1266790-mRNA-1:cds;Parent=Msa1266790-mRNA-1
chr8_2	three_prime_UTR	71817684	71817739	71817684	ID=Msa1266790-mRNA-1:three_prime_utr;Parent=Msa1266790-mRNA-1

Gene Sequence

>Msa1266790

ATGGTGATATTGAACCTTGGGAAGAAGCAGAGTAAGAAGAAGTTGCATAGTGGAGAAGGAGTGAGACTTGGAAAATATGAGCTGGGTAGGACTCTTGGTGAGGGCAATTTTGGTAAAGTCAAATTTGCTAGGAACACTGATTCTGGACATCCTTATGCTATTAAGATTATTGACAAGAACAGGATCATTGATCTCAATATCACAAACCAGATAAAGAGGGAAATATGTGCCTTGAAGCTCCTAAGGCATCCCAATGTTGTTAAATTATACGAGGTCTTAGCTAGCAAAACAAAAATTTACATGGTACTTGAGTACGTGACAGGAGAGGAGTTATTTGACAAAATAGCTTCCAAGGGTAAACTTACTGAAGGTGAAGGTAGAAAATTGTTCCAACAGTTGATTGATGGTGTGAGCTACTGCCACAGTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTTGTGGATGCCAAAGGGAATCTAAAGATAACTGATTTTGGTCTTAGTGCTTTACCCCAACAATTTAGGGCAGATGGGTTGTTGCATACAACATGTGGAAGTGCAAATTATGTTGCACCAGAGATTCTTGCTAATAGGGGCTATAATGGTGCATCATCAGATGTATGGTCATGTGGTGTTATCTTGTATGTAGTCTTAACAGGATTCCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAGAAGGTTTTGAAAGGAGATTTTCAGAAACCAAAATGGTTATCAGCTGGTGCACAAAACATTATAAAGAGGATTCTTGATCCCAACCCTAAAACCAGAATAACAATGGCAGGGATCAAAGAAGATTTGTGGTTCAAGGAAGGATATCAAGCAGATCACGAGGACGAGGAAGACAATGTATATGTTGACGATCAAGCCTTTAACATCCATGAATTGTCACAGGAAGAAGAAAAGAGTAGTTCAGGATCACCAATTCGTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTATCTGAGAGGAAGATAAGGTTTACAACTAATCTTTCAGCCAAAGATCTGATGGAGAAGATTGAAGATTCTGTGACAGAAATGGAATTTAGAGTTCAAAAGAAAAATGGCAAAGTTAGTAGTACTATTGCTGATATTTAG

Protein sequence

>Msa1266790

MVILNLGKKQSKKKLHSGEGVRLGKYELGRTLGEGNFGKVKFARNTDSGHPYAIKIIDKNRIIDLNITNQIKREICALKLLRHPNVVKLYEVLASKTKIYMVLEYVTGEELFDKIASKGKLTEGEGRKLFQQLIDGVSYCHSKGVFHRDLKLENVLVDAKGNLKITDFGLSALPQQFRADGLLHTTCGSANYVAPEILANRGYNGASSDVWSCGVILYVVLTGFLPFDDRNLAVLYQKVLKGDFQKPKWLSAGAQNIIKRILDPNPKTRITMAGIKEDLWFKEGYQADHEDEEDNVYVDDQAFNIHELSQEEEKSSSGSPIRINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTTNLSAKDLMEKIEDSVTEMEFRVQKKNGKVSSTIADI*