Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1268760 | XP_013444287.1 | 95.763 | 118 | 5 | 0 | 5 | 122 | 157 | 274 | 9.13e-76 | 236 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1268760 | sp|Q9FZ62|PPSP2_ARATH | 51.695 | 118 | 49 | 4 | 5 | 114 | 158 | 275 | 1.56e-33 | 120 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1268760 | A0A072TLD9 | 95.763 | 118 | 5 | 0 | 5 | 122 | 157 | 274 | 4.36e-76 | 236 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1268760 | Msa1313220 | 0.851947 | 6.366835e-61 | -8.615850e-47 |
Msa1268760 | Msa1350020 | 0.855399 | 6.475176e-62 | -8.615850e-47 |
Msa1268760 | Msa1390060 | 0.927109 | 1.855885e-91 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1268760 | MtrunA17_Chr8g0341741 | 95.763 | 118 | 5 | 0 | 5 | 122 | 157 | 274 | 8.40e-80 | 236 |
Msa1268760 | MtrunA17_Chr8g0341701 | 79.661 | 118 | 24 | 0 | 5 | 122 | 156 | 273 | 9.84e-67 | 202 |
Msa1268760 | MtrunA17_Chr8g0341731 | 78.814 | 118 | 25 | 0 | 5 | 122 | 157 | 274 | 3.47e-66 | 201 |
Msa1268760 | MtrunA17_Chr8g0341721 | 83.929 | 112 | 14 | 1 | 5 | 112 | 156 | 267 | 3.47e-63 | 193 |
Msa1268760 | MtrunA17_Chr2g0330511 | 67.241 | 116 | 38 | 0 | 5 | 120 | 154 | 269 | 9.74e-51 | 161 |
Msa1268760 | MtrunA17_Chr2g0309111 | 66.379 | 116 | 39 | 0 | 5 | 120 | 199 | 314 | 1.65e-49 | 160 |
Msa1268760 | MtrunA17_Chr8g0389271 | 62.651 | 83 | 30 | 1 | 5 | 87 | 155 | 236 | 3.53e-35 | 120 |
Msa1268760 | MtrunA17_Chr2g0330491 | 48.333 | 120 | 58 | 1 | 5 | 120 | 155 | 274 | 7.01e-34 | 118 |
Msa1268760 | MtrunA17_Chr2g0330501 | 39.726 | 73 | 40 | 1 | 50 | 118 | 2 | 74 | 9.97e-11 | 53.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1268760 | AT1G17710.2 | 51.695 | 118 | 49 | 4 | 5 | 114 | 126 | 243 | 5.21e-35 | 121 |
Msa1268760 | AT1G17710.1 | 51.695 | 118 | 49 | 4 | 5 | 114 | 158 | 275 | 1.59e-34 | 120 |
Msa1268760 | AT1G73010.1 | 55.140 | 107 | 44 | 1 | 5 | 107 | 167 | 273 | 3.63e-33 | 117 |
Msa1268760 | AT4G29530.2 | 50.562 | 89 | 43 | 1 | 5 | 92 | 144 | 232 | 1.52e-26 | 99.0 |
Msa1268760 | AT4G29530.1 | 50.562 | 89 | 43 | 1 | 5 | 92 | 155 | 243 | 2.72e-26 | 98.6 |
Find 21 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAGACCCTTCACTTATTA+AGG | 0.220496 | 8_3:+1895347 | Msa1268760:CDS |
CTTATTAAGGCTGAAATTCA+TGG | 0.328180 | 8_3:+1895360 | Msa1268760:CDS |
TTTGATTAACAAAATTATGA+TGG | 0.399120 | 8_3:+1895422 | Msa1268760:CDS |
GAACTGGACTAGATAGAGTT+TGG | 0.404345 | 8_3:-1895482 | None:intergenic |
ATCTACCTTGGTGATGGTGC+TGG | 0.412159 | 8_3:+1895243 | Msa1268760:CDS |
CACACTGGAAAATTCTTCCT+TGG | 0.458582 | 8_3:-1895312 | None:intergenic |
TGCCTAAAGCTGTCTCAGTT+AGG | 0.466799 | 8_3:+1895514 | Msa1268760:CDS |
TTAGGCAAAGATACAAGAAC+TGG | 0.474583 | 8_3:-1895498 | None:intergenic |
CTTTCTCTTAGCCTCAAGCT+AGG | 0.488657 | 8_3:-1895276 | None:intergenic |
GGCCTAACTGAGACAGCTTT+AGG | 0.505096 | 8_3:-1895516 | None:intergenic |
GAAATTCATGGTTGGTGTGA+TGG | 0.515965 | 8_3:+1895372 | Msa1268760:CDS |
GATTAACAAAATTATGATGG+AGG | 0.550625 | 8_3:+1895425 | Msa1268760:CDS |
TTGGTGTGATGGAGAAGAGT+TGG | 0.555513 | 8_3:+1895383 | Msa1268760:CDS |
AGGTTTATCTACCTTGGTGA+TGG | 0.556828 | 8_3:+1895237 | Msa1268760:CDS |
ATTTCAGCCTTAATAAGTGA+AGG | 0.559691 | 8_3:-1895354 | None:intergenic |
TTTCTCTTAGCCTCAAGCTA+GGG | 0.559791 | 8_3:-1895275 | None:intergenic |
TTAAGGCTGAAATTCATGGT+TGG | 0.568918 | 8_3:+1895364 | Msa1268760:CDS |
TTTCAGCCTTAATAAGTGAA+GGG | 0.593746 | 8_3:-1895353 | None:intergenic |
GAGACTATTGCCCTAGCTTG+AGG | 0.597383 | 8_3:+1895265 | Msa1268760:CDS |
TTGCATATCAAATCCCACAC+TGG | 0.639282 | 8_3:-1895327 | None:intergenic |
AGTCTCCAGCACCATCACCA+AGG | 0.694728 | 8_3:-1895248 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTATTCTTAATTTTGAA+GGG | - | chr8_3:1893885-1893904 | None:intergenic | 10.0% |
!!! | AAAATTATTCTTAATTTTGA+AGG | - | chr8_3:1893886-1893905 | None:intergenic | 10.0% |
!!! | TTTTTTAAAATCATTATTTC+AGG | + | chr8_3:1895164-1895183 | Msa1268760:intron | 10.0% |
!!! | TTTTTAAAATCATTATTTCA+GGG | + | chr8_3:1895165-1895184 | Msa1268760:intron | 10.0% |
!! | TAAATTGAAAAAATAAAGTG+TGG | + | chr8_3:1893320-1893339 | Msa1268760:intron | 15.0% |
!! | AAATTGAAAAAATAAAGTGT+GGG | + | chr8_3:1893321-1893340 | Msa1268760:intron | 15.0% |
!! | AATTTCAAACAAATTAAGAA+TGG | - | chr8_3:1894540-1894559 | None:intergenic | 15.0% |
!! | TTTGATTAACAAAATTATGA+TGG | + | chr8_3:1895422-1895441 | Msa1268760:CDS | 15.0% |
!!! | CTTATTTTGAGAAAAAAGAA+TGG | + | chr8_3:1892777-1892796 | Msa1268760:intron | 20.0% |
!!! | AGTAATCTAATTCTTTGTTT+TGG | - | chr8_3:1892927-1892946 | None:intergenic | 20.0% |
!! | AACAAAGAATTAGATTACTA+AGG | + | chr8_3:1892928-1892947 | Msa1268760:intron | 20.0% |
!! | GTGTGAATTTAAAAGAAAAT+CGG | + | chr8_3:1893247-1893266 | Msa1268760:intron | 20.0% |
!! | AATTGAAAAAATAAAGTGTG+GGG | + | chr8_3:1893322-1893341 | Msa1268760:intron | 20.0% |
!!! | CTCATAATTTTAGCTAATTT+TGG | + | chr8_3:1893467-1893486 | Msa1268760:intron | 20.0% |
!!! | CAAAATCTCTTTAAAAGTAT+AGG | + | chr8_3:1893689-1893708 | Msa1268760:intron | 20.0% |
!!! | AGATCATTTTTAATTTCGAA+AGG | - | chr8_3:1893942-1893961 | None:intergenic | 20.0% |
!!! | TAAAATTTCTTTTGTAGACA+GGG | - | chr8_3:1894397-1894416 | None:intergenic | 20.0% |
!!! | TTTTATCCTTGTTGTATTTA+GGG | - | chr8_3:1894437-1894456 | None:intergenic | 20.0% |
!!! | GTTTTTTTTCTTTCTAATTG+CGG | - | chr8_3:1894694-1894713 | None:intergenic | 20.0% |
!! | ATTAGTAAAAGATACAACTT+AGG | + | chr8_3:1894797-1894816 | Msa1268760:intron | 20.0% |
! | ACATTATGAGAATTTCAGTT+GGG | - | chr8_3:1893000-1893019 | None:intergenic | 25.0% |
!!! | TGTATTTTTGGAATTTCAGT+TGG | + | chr8_3:1893158-1893177 | Msa1268760:intron | 25.0% |
!!! | GTATTTTTGGAATTTCAGTT+GGG | + | chr8_3:1893159-1893178 | Msa1268760:intron | 25.0% |
!!! | ATGTAGATTTGCTGAAATAT+TGG | + | chr8_3:1893225-1893244 | Msa1268760:intron | 25.0% |
! | TTAAAAGAAAATCGGAATGT+TGG | + | chr8_3:1893255-1893274 | Msa1268760:intron | 25.0% |
! | ATTGAAAAAATAAAGTGTGG+GGG | + | chr8_3:1893323-1893342 | Msa1268760:intron | 25.0% |
!! | CGTTAGTAGTGTTTATATTT+TGG | + | chr8_3:1893367-1893386 | Msa1268760:intron | 25.0% |
! | AACTAATTGGATATGAATTG+AGG | - | chr8_3:1893533-1893552 | None:intergenic | 25.0% |
! | AATTAGTTCAAAGACTATTG+TGG | - | chr8_3:1893639-1893658 | None:intergenic | 25.0% |
! | ACAATAGTCTTTGAACTAAT+TGG | + | chr8_3:1893638-1893657 | Msa1268760:intron | 25.0% |
!!! | TTATACCTTAAAATGGACTA+TGG | - | chr8_3:1893859-1893878 | None:intergenic | 25.0% |
! | AGGGAAATTATACCTTAAAA+TGG | - | chr8_3:1893866-1893885 | None:intergenic | 25.0% |
! | GACATTATTATGCCTAAAAA+GGG | - | chr8_3:1893920-1893939 | None:intergenic | 25.0% |
! | ATATTGAAGCCACTATAATA+TGG | - | chr8_3:1894095-1894114 | None:intergenic | 25.0% |
!!! | CTTTCTTTTAAGACATTTTG+TGG | - | chr8_3:1894267-1894286 | None:intergenic | 25.0% |
!!! | GTTTTAAGATTGTTGGATTT+TGG | - | chr8_3:1894363-1894382 | None:intergenic | 25.0% |
!! | CTAAAATTTCTTTTGTAGAC+AGG | - | chr8_3:1894398-1894417 | None:intergenic | 25.0% |
!! | CTGTCTACAAAAGAAATTTT+AGG | + | chr8_3:1894396-1894415 | Msa1268760:intron | 25.0% |
!! | TACAAAAGAAATTTTAGGCT+CGG | + | chr8_3:1894401-1894420 | Msa1268760:intron | 25.0% |
!!! | CTTTTATCCTTGTTGTATTT+AGG | - | chr8_3:1894438-1894457 | None:intergenic | 25.0% |
! | CTAAATACAACAAGGATAAA+AGG | + | chr8_3:1894436-1894455 | Msa1268760:intron | 25.0% |
!! | TTTACTATAAGACCTTTTTG+TGG | - | chr8_3:1894623-1894642 | None:intergenic | 25.0% |
!!! | TTTGAGCTTGATTTGTTATT+GGG | - | chr8_3:1894823-1894842 | None:intergenic | 25.0% |
!!! | ATTTGAGCTTGATTTGTTAT+TGG | - | chr8_3:1894824-1894843 | None:intergenic | 25.0% |
!! | CCTCTTCAAAAATTGAATTT+TGG | - | chr8_3:1895209-1895228 | None:intergenic | 25.0% |
!!! | CCAAAATTCAATTTTTGAAG+AGG | + | chr8_3:1895206-1895225 | Msa1268760:CDS | 25.0% |
!!! | TTTTTGAAGAGGATAAAAAG+AGG | + | chr8_3:1895217-1895236 | Msa1268760:CDS | 25.0% |
! | GATTAACAAAATTATGATGG+AGG | + | chr8_3:1895425-1895444 | Msa1268760:CDS | 25.0% |
TCACTAAAGTCACAATGTTA+GGG | - | chr8_3:1892818-1892837 | None:intergenic | 30.0% | |
TTCACTAAAGTCACAATGTT+AGG | - | chr8_3:1892819-1892838 | None:intergenic | 30.0% | |
ATATATTGTAGTAGAAGCGA+TGG | + | chr8_3:1892885-1892904 | Msa1268760:intron | 30.0% | |
!!! | CTAATTCTTTGTTTTGGACA+CGG | - | chr8_3:1892921-1892940 | None:intergenic | 30.0% |
GACATTATGAGAATTTCAGT+TGG | - | chr8_3:1893001-1893020 | None:intergenic | 30.0% | |
GGAAAGATATGAAACTTAAC+TGG | - | chr8_3:1893512-1893531 | None:intergenic | 30.0% | |
GGTGTGATTTATAAATTGAG+TGG | - | chr8_3:1893718-1893737 | None:intergenic | 30.0% | |
ATGGATAACTCAATAGAACT+TGG | - | chr8_3:1893739-1893758 | None:intergenic | 30.0% | |
GGAGAAGAAATAAAGAGTTA+TGG | - | chr8_3:1893758-1893777 | None:intergenic | 30.0% | |
!! | GAACACTCTTAATTTTGAGT+AGG | - | chr8_3:1893830-1893849 | None:intergenic | 30.0% |
! | TAAGACCATAGTCCATTTTA+AGG | + | chr8_3:1893851-1893870 | Msa1268760:intron | 30.0% |
! | TTAGATCATAGTCCCTTTTT+AGG | + | chr8_3:1893905-1893924 | Msa1268760:intron | 30.0% |
GGACATTATTATGCCTAAAA+AGG | - | chr8_3:1893921-1893940 | None:intergenic | 30.0% | |
!! | TCTGTCTTTTGAGAAATTAG+AGG | + | chr8_3:1893989-1894008 | Msa1268760:intron | 30.0% |
TGAGAAATTAGAGGTTAGAA+TGG | + | chr8_3:1893998-1894017 | Msa1268760:intron | 30.0% | |
GTCACAATACCATATTATAG+TGG | + | chr8_3:1894083-1894102 | Msa1268760:intron | 30.0% | |
!!! | GTAGTTGACTTGTTTTATCT+TGG | + | chr8_3:1894197-1894216 | Msa1268760:intron | 30.0% |
!!! | AGGAAACGTTTTAAGATTGT+TGG | - | chr8_3:1894370-1894389 | None:intergenic | 30.0% |
! | ACAAAAGAAATTTTAGGCTC+GGG | + | chr8_3:1894402-1894421 | Msa1268760:intron | 30.0% |
! | AATTTCTCTTCATTCAGGTT+AGG | - | chr8_3:1894767-1894786 | None:intergenic | 30.0% |
CAGTAAATTTCTCTTCATTC+AGG | - | chr8_3:1894772-1894791 | None:intergenic | 30.0% | |
ACGTTATTGTTCGTTTAAAC+AGG | - | chr8_3:1894915-1894934 | None:intergenic | 30.0% | |
AAAAAGAGGTTTATCTACCT+TGG | + | chr8_3:1895231-1895250 | Msa1268760:CDS | 30.0% | |
TTTCAGCCTTAATAAGTGAA+GGG | - | chr8_3:1895356-1895375 | None:intergenic | 30.0% | |
ATTTCAGCCTTAATAAGTGA+AGG | - | chr8_3:1895357-1895376 | None:intergenic | 30.0% | |
CTTATTAAGGCTGAAATTCA+TGG | + | chr8_3:1895360-1895379 | Msa1268760:CDS | 30.0% | |
! | AACTCACGCATGTGTATTTT+TGG | + | chr8_3:1893146-1893165 | Msa1268760:intron | 35.0% |
! | ACGTGTGTTCTATTTTACGT+GGG | - | chr8_3:1893350-1893369 | None:intergenic | 35.0% |
! | AACGTGTGTTCTATTTTACG+TGG | - | chr8_3:1893351-1893370 | None:intergenic | 35.0% |
AGTGGAGGAAACAAACTAAT+TGG | - | chr8_3:1893546-1893565 | None:intergenic | 35.0% | |
AAGAAACTAACTCACGAAAG+TGG | - | chr8_3:1893564-1893583 | None:intergenic | 35.0% | |
TATCCACAAGAGTTGTTGAA+AGG | + | chr8_3:1893592-1893611 | Msa1268760:intron | 35.0% | |
AAACCTTTCAACAACTCTTG+TGG | - | chr8_3:1893598-1893617 | None:intergenic | 35.0% | |
AAATGCATCGAGTAGAAAGA+GGG | - | chr8_3:1893779-1893798 | None:intergenic | 35.0% | |
AAGAAAGGGGAAAAATGACT+CGG | - | chr8_3:1893802-1893821 | None:intergenic | 35.0% | |
TTGAGTAGGCAGAAAAGAAA+GGG | - | chr8_3:1893816-1893835 | None:intergenic | 35.0% | |
TTTGAGTAGGCAGAAAAGAA+AGG | - | chr8_3:1893817-1893836 | None:intergenic | 35.0% | |
ATGAGAACGTCATGTTTGAA+TGG | + | chr8_3:1894039-1894058 | Msa1268760:intron | 35.0% | |
GTATTGTGACCACTCTATTA+TGG | - | chr8_3:1894073-1894092 | None:intergenic | 35.0% | |
GAGAAAGACACTCTCAAATA+TGG | - | chr8_3:1894139-1894158 | None:intergenic | 35.0% | |
!!! | GTTGACTTGTTTTATCTTGG+AGG | + | chr8_3:1894200-1894219 | Msa1268760:intron | 35.0% |
! | TAGCCTGTATTGCATAGTTT+TGG | + | chr8_3:1894235-1894254 | Msa1268760:intron | 35.0% |
TGTCCAAAACTATGCAATAC+AGG | - | chr8_3:1894241-1894260 | None:intergenic | 35.0% | |
TGTCTTAAAAGAAAGCCATG+TGG | + | chr8_3:1894272-1894291 | Msa1268760:intron | 35.0% | |
TGTTGTCCCTAAATACAACA+AGG | + | chr8_3:1894428-1894447 | Msa1268760:intron | 35.0% | |
ATACATCTTTCGACTGAACA+CGG | + | chr8_3:1894467-1894486 | Msa1268760:intron | 35.0% | |
TAGAGTTCTTATTCACAGTG+TGG | - | chr8_3:1894581-1894600 | None:intergenic | 35.0% | |
! | TATGACCCAATGTCATTTCT+TGG | - | chr8_3:1894662-1894681 | None:intergenic | 35.0% |
! | AAAGAGATTTTGTGATGCCA+AGG | + | chr8_3:1895295-1895314 | Msa1268760:CDS | 35.0% |
! | AAGGAAGAATTTTCCAGTGT+GGG | + | chr8_3:1895314-1895333 | Msa1268760:CDS | 35.0% |
CAAAGACCCTTCACTTATTA+AGG | + | chr8_3:1895347-1895366 | Msa1268760:CDS | 35.0% | |
TTAAGGCTGAAATTCATGGT+TGG | + | chr8_3:1895364-1895383 | Msa1268760:CDS | 35.0% | |
TTAGGCAAAGATACAAGAAC+TGG | - | chr8_3:1895501-1895520 | None:intergenic | 35.0% | |
! | GTTGGGTAAAGAGCAGATTT+TGG | - | chr8_3:1892963-1892982 | None:intergenic | 40.0% |
AACGTGAGTTAACTCAGGTA+GGG | - | chr8_3:1893023-1893042 | None:intergenic | 40.0% | |
TAACGTGAGTTAACTCAGGT+AGG | - | chr8_3:1893024-1893043 | None:intergenic | 40.0% | |
ACACTAACGTGAGTTAACTC+AGG | - | chr8_3:1893028-1893047 | None:intergenic | 40.0% | |
TGGGAATGAGCAAAATGTCT+TGG | + | chr8_3:1893178-1893197 | Msa1268760:intron | 40.0% | |
AAACTAACTCACGAAAGTGG+AGG | - | chr8_3:1893561-1893580 | None:intergenic | 40.0% | |
GAAATGCATCGAGTAGAAAG+AGG | - | chr8_3:1893780-1893799 | None:intergenic | 40.0% | |
TGAGTAGGCAGAAAAGAAAG+GGG | - | chr8_3:1893815-1893834 | None:intergenic | 40.0% | |
GTCTCAATGCCATAATAGAG+TGG | + | chr8_3:1894061-1894080 | Msa1268760:intron | 40.0% | |
!! | TTGAGAGTGTCTTTCTCGAA+CGG | + | chr8_3:1894142-1894161 | Msa1268760:intron | 40.0% |
!!! | GACTTGTTTTATCTTGGAGG+TGG | + | chr8_3:1894203-1894222 | Msa1268760:intron | 40.0% |
! | TAGGTTGAGTAATGACCACA+TGG | - | chr8_3:1894290-1894309 | None:intergenic | 40.0% |
CAACCTAGTAACAACTTCGA+TGG | + | chr8_3:1894303-1894322 | Msa1268760:intron | 40.0% | |
CATCCATCGAAGTTGTTACT+AGG | - | chr8_3:1894309-1894328 | None:intergenic | 40.0% | |
ACTCTAACTGCCATGAGAAT+AGG | + | chr8_3:1894595-1894614 | Msa1268760:intron | 40.0% | |
! | TTTTGTGGCTCCTATTCTCA+TGG | - | chr8_3:1894608-1894627 | None:intergenic | 40.0% |
TGAGAATAGGAGCCACAAAA+AGG | + | chr8_3:1894608-1894627 | Msa1268760:intron | 40.0% | |
CACCACCAAGAAATGACATT+GGG | + | chr8_3:1894654-1894673 | Msa1268760:intron | 40.0% | |
TCAAGCTCAAATGCTGCATT+TGG | + | chr8_3:1894832-1894851 | Msa1268760:intron | 40.0% | |
TAAGATATTCGCGAGAACGT+GGG | - | chr8_3:1894945-1894964 | None:intergenic | 40.0% | |
TTAAGATATTCGCGAGAACG+TGG | - | chr8_3:1894946-1894965 | None:intergenic | 40.0% | |
CGTTCTCGCGAATATCTTAA+CGG | + | chr8_3:1894946-1894965 | Msa1268760:intron | 40.0% | |
TAAGGCACACATGTGTTTGA+CGG | - | chr8_3:1894998-1895017 | None:intergenic | 40.0% | |
AACACATGTGTGCCTTACAA+CGG | + | chr8_3:1895001-1895020 | Msa1268760:intron | 40.0% | |
AGGTTTATCTACCTTGGTGA+TGG | + | chr8_3:1895237-1895256 | Msa1268760:CDS | 40.0% | |
TTTCTCTTAGCCTCAAGCTA+GGG | - | chr8_3:1895278-1895297 | None:intergenic | 40.0% | |
CACACTGGAAAATTCTTCCT+TGG | - | chr8_3:1895315-1895334 | None:intergenic | 40.0% | |
! | CAAGGAAGAATTTTCCAGTG+TGG | + | chr8_3:1895313-1895332 | Msa1268760:CDS | 40.0% |
TTGCATATCAAATCCCACAC+TGG | - | chr8_3:1895330-1895349 | None:intergenic | 40.0% | |
! | GAAATTCATGGTTGGTGTGA+TGG | + | chr8_3:1895372-1895391 | Msa1268760:CDS | 40.0% |
! | GAACTGGACTAGATAGAGTT+TGG | - | chr8_3:1895485-1895504 | None:intergenic | 40.0% |
!!! | GGGAACGAGCAATTTTGGTT+GGG | - | chr8_3:1892980-1892999 | None:intergenic | 45.0% |
!! | TGGGAACGAGCAATTTTGGT+TGG | - | chr8_3:1892981-1893000 | None:intergenic | 45.0% |
! | CAGTTGGGAACGAGCAATTT+TGG | - | chr8_3:1892985-1893004 | None:intergenic | 45.0% |
! | TTTCTCGAACGGTTAGCTAC+AGG | + | chr8_3:1894153-1894172 | Msa1268760:intron | 45.0% |
! | TTCTCGAACGGTTAGCTACA+GGG | + | chr8_3:1894154-1894173 | Msa1268760:intron | 45.0% |
! | TCTTTTGTAGACAGGGCAGA+AGG | - | chr8_3:1894390-1894409 | None:intergenic | 45.0% |
! | CCAATGTCATTTCTTGGTGG+TGG | - | chr8_3:1894656-1894675 | None:intergenic | 45.0% |
CCACCACCAAGAAATGACAT+TGG | + | chr8_3:1894653-1894672 | Msa1268760:intron | 45.0% | |
! | GACCCAATGTCATTTCTTGG+TGG | - | chr8_3:1894659-1894678 | None:intergenic | 45.0% |
! | TCTTCATTCAGGTTAGGCTG+CGG | - | chr8_3:1894761-1894780 | None:intergenic | 45.0% |
CTTTCTCTTAGCCTCAAGCT+AGG | - | chr8_3:1895279-1895298 | None:intergenic | 45.0% | |
! | TTGGTGTGATGGAGAAGAGT+TGG | + | chr8_3:1895383-1895402 | Msa1268760:CDS | 45.0% |
TGCCTAAAGCTGTCTCAGTT+AGG | + | chr8_3:1895514-1895533 | Msa1268760:CDS | 45.0% | |
!! | ATCTACCTTGGTGATGGTGC+TGG | + | chr8_3:1895243-1895262 | Msa1268760:CDS | 50.0% |
GAGACTATTGCCCTAGCTTG+AGG | + | chr8_3:1895265-1895284 | Msa1268760:CDS | 50.0% | |
GGCCTAACTGAGACAGCTTT+AGG | - | chr8_3:1895519-1895538 | None:intergenic | 50.0% | |
AGTCTCCAGCACCATCACCA+AGG | - | chr8_3:1895251-1895270 | None:intergenic | 55.0% | |
AACACACCCCTTCTCCGCGA+AGG | + | chr8_3:1894867-1894886 | Msa1268760:intron | 60.0% | |
ACACACCCCTTCTCCGCGAA+GGG | + | chr8_3:1894868-1894887 | Msa1268760:intron | 60.0% | |
CACACCCCTTCTCCGCGAAG+GGG | + | chr8_3:1894869-1894888 | Msa1268760:intron | 65.0% | |
ACACCCCTTCTCCGCGAAGG+GGG | + | chr8_3:1894870-1894889 | Msa1268760:intron | 65.0% | |
TACCCCCCTTCGCGGAGAAG+GGG | - | chr8_3:1894876-1894895 | None:intergenic | 65.0% | |
GTACCCCCCTTCGCGGAGAA+GGG | - | chr8_3:1894877-1894896 | None:intergenic | 65.0% | |
AGTACCCCCCTTCGCGGAGA+AGG | - | chr8_3:1894878-1894897 | None:intergenic | 65.0% | |
!! | TCTCCGCGAAGGGGGGTACT+CGG | + | chr8_3:1894878-1894897 | Msa1268760:intron | 65.0% |
CACCCCTTCTCCGCGAAGGG+GGG | + | chr8_3:1894871-1894890 | Msa1268760:intron | 70.0% | |
GCTCCGAGTACCCCCCTTCG+CGG | - | chr8_3:1894884-1894903 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 1892749 | 1895542 | 1892749 | ID=Msa1268760;Name=Msa1268760 |
chr8_3 | mRNA | 1892749 | 1895542 | 1892749 | ID=Msa1268760-mRNA-1;Parent=Msa1268760;Name=Msa1268760-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.33|1|1|3|0|122 |
chr8_3 | exon | 1892749 | 1892753 | 1892749 | ID=Msa1268760-mRNA-1:exon:569;Parent=Msa1268760-mRNA-1 |
chr8_3 | exon | 1892764 | 1892770 | 1892764 | ID=Msa1268760-mRNA-1:exon:570;Parent=Msa1268760-mRNA-1 |
chr8_3 | exon | 1895186 | 1895542 | 1895186 | ID=Msa1268760-mRNA-1:exon:571;Parent=Msa1268760-mRNA-1 |
chr8_3 | CDS | 1892749 | 1892753 | 1892749 | ID=Msa1268760-mRNA-1:cds;Parent=Msa1268760-mRNA-1 |
chr8_3 | CDS | 1892764 | 1892770 | 1892764 | ID=Msa1268760-mRNA-1:cds;Parent=Msa1268760-mRNA-1 |
chr8_3 | CDS | 1895186 | 1895542 | 1895186 | ID=Msa1268760-mRNA-1:cds;Parent=Msa1268760-mRNA-1 |
Gene Sequence |
Protein sequence |