Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269590 | XP_003602950.1 | 95.028 | 362 | 18 | 0 | 1 | 362 | 1 | 362 | 0.0 | 643 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269590 | sp|Q6YXH8|CCD41_ORYSJ | 47.075 | 359 | 164 | 9 | 9 | 355 | 12 | 356 | 1.43e-87 | 271 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269590 | G7J576 | 95.028 | 362 | 18 | 0 | 1 | 362 | 1 | 362 | 0.0 | 643 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1269590 | Msa1351030 | 0.912973 | 1.052703e-83 | -8.615850e-47 |
Msa0475620 | Msa1269590 | 0.918357 | 1.722436e-86 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269590 | MtrunA17_Chr3g0133211 | 95.028 | 362 | 18 | 0 | 1 | 362 | 1 | 362 | 0.0 | 643 |
Msa1269590 | MtrunA17_Chr4g0041721 | 75.824 | 364 | 64 | 5 | 1 | 362 | 1 | 342 | 0.0 | 526 |
Msa1269590 | MtrunA17_Chr5g0412471 | 51.111 | 360 | 148 | 11 | 1 | 354 | 1 | 338 | 5.29e-104 | 310 |
Msa1269590 | MtrunA17_Chr5g0427191 | 48.588 | 354 | 166 | 8 | 3 | 352 | 4 | 345 | 1.31e-102 | 306 |
Msa1269590 | MtrunA17_Chr8g0367661 | 40.850 | 306 | 157 | 6 | 65 | 352 | 62 | 361 | 8.91e-64 | 207 |
Msa1269590 | MtrunA17_Chr8g0364521 | 42.241 | 232 | 131 | 2 | 62 | 291 | 59 | 289 | 1.53e-53 | 180 |
Msa1269590 | MtrunA17_Chr1g0208231 | 36.364 | 297 | 174 | 7 | 62 | 352 | 72 | 359 | 7.80e-51 | 174 |
Msa1269590 | MtrunA17_Chr5g0414271 | 37.024 | 289 | 156 | 4 | 9 | 295 | 12 | 276 | 2.26e-50 | 171 |
Msa1269590 | MtrunA17_Chr4g0053381 | 37.786 | 262 | 154 | 4 | 95 | 352 | 80 | 336 | 1.47e-49 | 170 |
Msa1269590 | MtrunA17_Chr3g0134261 | 37.165 | 261 | 156 | 5 | 96 | 353 | 84 | 339 | 4.51e-46 | 160 |
Msa1269590 | MtrunA17_Chr5g0401271 | 39.196 | 199 | 113 | 3 | 95 | 290 | 101 | 294 | 4.17e-37 | 137 |
Msa1269590 | MtrunA17_Chr2g0323361 | 32.069 | 290 | 172 | 8 | 74 | 353 | 28 | 302 | 1.93e-35 | 131 |
Msa1269590 | MtrunA17_Chr2g0280941 | 35.268 | 224 | 130 | 6 | 99 | 319 | 43 | 254 | 7.29e-34 | 126 |
Msa1269590 | MtrunA17_Chr3g0134781 | 34.440 | 241 | 128 | 6 | 8 | 246 | 1 | 213 | 4.32e-31 | 120 |
Msa1269590 | MtrunA17_Chr3g0102851 | 31.765 | 170 | 102 | 5 | 92 | 255 | 56 | 217 | 2.92e-15 | 75.5 |
Msa1269590 | MtrunA17_Chr4g0054011 | 29.915 | 234 | 144 | 7 | 97 | 319 | 68 | 292 | 2.94e-15 | 75.9 |
Msa1269590 | MtrunA17_Chr3g0138431 | 29.121 | 182 | 116 | 4 | 74 | 251 | 225 | 397 | 5.20e-15 | 76.3 |
Msa1269590 | MtrunA17_Chr1g0148681 | 28.492 | 179 | 123 | 3 | 73 | 251 | 167 | 340 | 1.17e-14 | 74.7 |
Msa1269590 | MtrunA17_Chr3g0102861 | 30.000 | 170 | 105 | 5 | 92 | 255 | 46 | 207 | 2.22e-13 | 69.7 |
Msa1269590 | MtrunA17_Chr3g0103471 | 30.286 | 175 | 107 | 6 | 92 | 258 | 46 | 213 | 2.25e-12 | 66.6 |
Msa1269590 | MtrunA17_Chr8g0370671 | 30.000 | 170 | 107 | 4 | 91 | 257 | 203 | 363 | 2.71e-12 | 67.8 |
Msa1269590 | MtrunA17_Chr1g0161581 | 28.155 | 206 | 120 | 8 | 51 | 252 | 329 | 510 | 3.56e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269590 | AT5G65420.1 | 50.545 | 275 | 118 | 6 | 62 | 332 | 42 | 302 | 3.25e-82 | 253 |
Msa1269590 | AT5G65420.3 | 49.123 | 285 | 117 | 7 | 62 | 332 | 42 | 312 | 5.19e-81 | 250 |
Msa1269590 | AT2G22490.1 | 45.338 | 311 | 159 | 5 | 26 | 329 | 25 | 331 | 5.98e-81 | 251 |
Msa1269590 | AT2G22490.2 | 45.016 | 311 | 161 | 4 | 26 | 329 | 25 | 332 | 1.38e-80 | 251 |
Msa1269590 | AT5G10440.1 | 54.545 | 231 | 102 | 1 | 59 | 289 | 31 | 258 | 2.23e-78 | 243 |
Msa1269590 | AT5G65420.4 | 48.708 | 271 | 118 | 5 | 10 | 278 | 9 | 260 | 1.56e-76 | 237 |
Msa1269590 | AT5G10440.2 | 56.983 | 179 | 77 | 0 | 59 | 237 | 31 | 209 | 1.64e-66 | 210 |
Msa1269590 | AT5G65420.2 | 55.932 | 177 | 77 | 1 | 62 | 237 | 42 | 218 | 4.70e-62 | 199 |
Msa1269590 | AT1G70210.1 | 44.444 | 243 | 127 | 3 | 57 | 295 | 45 | 283 | 5.98e-62 | 202 |
Msa1269590 | AT3G50070.1 | 41.518 | 224 | 120 | 4 | 97 | 317 | 86 | 301 | 3.07e-46 | 161 |
Msa1269590 | AT4G34160.1 | 39.604 | 202 | 119 | 2 | 97 | 296 | 87 | 287 | 3.38e-45 | 159 |
Msa1269590 | AT5G67260.1 | 39.474 | 228 | 122 | 6 | 97 | 319 | 96 | 312 | 3.25e-43 | 154 |
Msa1269590 | AT5G67260.2 | 39.207 | 227 | 124 | 5 | 97 | 319 | 96 | 312 | 7.66e-43 | 154 |
Msa1269590 | AT4G37630.2 | 43.421 | 152 | 84 | 2 | 101 | 251 | 76 | 226 | 4.29e-32 | 121 |
Msa1269590 | AT4G03270.1 | 31.338 | 284 | 168 | 11 | 74 | 352 | 35 | 296 | 3.25e-31 | 120 |
Msa1269590 | AT4G37630.3 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 7.91e-31 | 118 |
Msa1269590 | AT4G37630.1 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 3.05e-30 | 118 |
Msa1269590 | AT4G03270.2 | 31.338 | 284 | 167 | 12 | 74 | 352 | 35 | 295 | 2.44e-29 | 115 |
Msa1269590 | AT5G02110.1 | 26.383 | 235 | 159 | 6 | 64 | 294 | 45 | 269 | 3.76e-18 | 84.7 |
Msa1269590 | AT1G20610.1 | 31.429 | 210 | 127 | 8 | 82 | 288 | 197 | 392 | 1.16e-15 | 78.2 |
Msa1269590 | AT1G77390.1 | 29.609 | 179 | 119 | 4 | 74 | 251 | 190 | 362 | 9.74e-15 | 75.5 |
Msa1269590 | AT5G02110.2 | 30.612 | 147 | 96 | 3 | 140 | 286 | 92 | 232 | 1.05e-14 | 74.3 |
Msa1269590 | AT4G37490.1 | 29.143 | 175 | 114 | 4 | 77 | 251 | 179 | 343 | 1.44e-14 | 75.1 |
Msa1269590 | AT3G11520.1 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 1.53e-14 | 74.7 |
Msa1269590 | AT3G11520.2 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 2.45e-14 | 73.9 |
Msa1269590 | AT1G76310.1 | 26.728 | 217 | 149 | 4 | 72 | 288 | 187 | 393 | 2.04e-13 | 71.6 |
Msa1269590 | AT1G76310.2 | 28.889 | 180 | 118 | 4 | 72 | 251 | 187 | 356 | 5.87e-13 | 69.7 |
Find 110 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGCAGGTCTTGACTTCT+TGG | 0.156748 | 8_3:+2823321 | Msa1269590:intron |
AATTGAACTAAAAGGGTTAT+TGG | 0.215800 | 8_3:+2821836 | Msa1269590:five_prime_UTR |
CTCTCTCACTTCAGTGTCTA+TGG | 0.221876 | 8_3:-2821669 | None:intergenic |
CTTTATTTAGATTATAGATT+TGG | 0.224239 | 8_3:-2821787 | None:intergenic |
TCCTCAGCCTCTTGATTTGC+AGG | 0.243856 | 8_3:+2822861 | Msa1269590:CDS |
TAGGTTGCAGTTTGGAGATT+TGG | 0.254751 | 8_3:+2822131 | Msa1269590:CDS |
GGCTGTAGCTTGCTTATCTT+TGG | 0.277760 | 8_3:+2822813 | Msa1269590:CDS |
GTTCGAGCACATTTCGGTTT+TGG | 0.278825 | 8_3:+2822606 | Msa1269590:CDS |
CATGACTCACCTTATAGTTT+TGG | 0.280433 | 8_3:-2824210 | None:intergenic |
GAATCGATCCAAGTAATTAA+TGG | 0.321350 | 8_3:-2822649 | None:intergenic |
TATGGTTTGGTTCGAAGTTT+CGG | 0.337739 | 8_3:-2821651 | None:intergenic |
TAAAGGGGTGAGTGGGGTTG+AGG | 0.340672 | 8_3:-2821566 | None:intergenic |
CAAATCTATAATCTAAATAA+AGG | 0.347585 | 8_3:+2821788 | Msa1269590:five_prime_UTR |
GAAAGTAACCTTATGGAATA+TGG | 0.352022 | 8_3:-2824056 | None:intergenic |
TTTATTTAGATTATAGATTT+GGG | 0.357724 | 8_3:-2821786 | None:intergenic |
TCACTTCAGTGTCTATGGTT+TGG | 0.358014 | 8_3:-2821664 | None:intergenic |
ACGAGGATTTGTGGCGTTCT+AGG | 0.359940 | 8_3:+2821980 | Msa1269590:CDS |
TTATCTATCCATTAATTACT+TGG | 0.373505 | 8_3:+2822641 | Msa1269590:CDS |
TTTAGGGTAAAGGGGTGAGT+GGG | 0.385838 | 8_3:-2821573 | None:intergenic |
TTTGTTTAATTGAACTAAAA+GGG | 0.388432 | 8_3:+2821829 | Msa1269590:five_prime_UTR |
GTAGTAGCCCAGATGCTAAA+AGG | 0.388944 | 8_3:+2823973 | Msa1269590:CDS |
CAAAGAGTACCAAAACTATA+AGG | 0.393869 | 8_3:+2824201 | Msa1269590:three_prime_UTR |
CACTGTTCAATGACATCTCT+TGG | 0.397078 | 8_3:-2823809 | None:intergenic |
TTTGCTACCATCAATTGCTT+GGG | 0.406060 | 8_3:-2823398 | None:intergenic |
AAACATTTAGGTACCTTTGA+TGG | 0.406098 | 8_3:-2823180 | None:intergenic |
TATTTGAATAGGTTGCAGTT+TGG | 0.406265 | 8_3:+2822123 | Msa1269590:CDS |
CTGGTGCTGATTATTTGAAT+AGG | 0.407191 | 8_3:+2822112 | Msa1269590:CDS |
CTCTGCAATGGCAACTCATC+AGG | 0.411138 | 8_3:-2822042 | None:intergenic |
ATTTGCTACCATCAATTGCT+TGG | 0.417048 | 8_3:-2823399 | None:intergenic |
CTGTGGCAACATGTGTTGTT+GGG | 0.427417 | 8_3:+2823371 | Msa1269590:CDS |
TTATAGGTTCGAGCACATTT+CGG | 0.428580 | 8_3:+2822600 | Msa1269590:intron |
TGAATATGGTGGTGGTGGTT+CGG | 0.429440 | 8_3:+2821948 | Msa1269590:CDS |
TCCTTGGTATTGCATGCTCT+TGG | 0.432351 | 8_3:+2824261 | Msa1269590:three_prime_UTR |
ATTATTGAAGTGTGTTGAAA+AGG | 0.434517 | 8_3:+2823785 | Msa1269590:CDS |
TTTAGCTTCAAACACAAACT+TGG | 0.447842 | 8_3:-2822994 | None:intergenic |
AGCTAAAACCATTCAGAGAA+TGG | 0.449900 | 8_3:+2823010 | Msa1269590:CDS |
AACACACCCATTGGGCTTTG+AGG | 0.450882 | 8_3:-2823876 | None:intergenic |
ATTGCAGAGTGAAGAGTGTT+TGG | 0.451360 | 8_3:+2822056 | Msa1269590:CDS |
CATCATCATTAATCTTAGAA+AGG | 0.451623 | 8_3:-2823103 | None:intergenic |
TAAAAGCTCCATTCTCTGAA+TGG | 0.457326 | 8_3:-2823018 | None:intergenic |
AACACCATCATAACGTTGTT+GGG | 0.457610 | 8_3:-2822019 | None:intergenic |
GACACCAATGCTGGTGGTGG+TGG | 0.467695 | 8_3:+2823930 | Msa1269590:CDS |
AACAAGAGAAAGAGAGAGAG+AGG | 0.470907 | 8_3:-2821623 | None:intergenic |
TGGTGGTGGTGGTTCGGTGG+AGG | 0.471956 | 8_3:+2821954 | Msa1269590:CDS |
AAACATTCAATGAAGGAGAA+TGG | 0.477187 | 8_3:-2823080 | None:intergenic |
GGGGAAACCCAAGCAATTGA+TGG | 0.479575 | 8_3:+2823391 | Msa1269590:CDS |
AATGTATCCAACACACCCAT+TGG | 0.480352 | 8_3:-2823885 | None:intergenic |
AGAGTGTTTGGTTCTGATGT+TGG | 0.485214 | 8_3:+2822068 | Msa1269590:CDS |
TAACAGTCAAAGAAAATTGG+AGG | 0.485659 | 8_3:+2824331 | Msa1269590:three_prime_UTR |
TTAGGGTAAAGGGGTGAGTG+GGG | 0.486613 | 8_3:-2821572 | None:intergenic |
AATGCAAAATATTTAACAGC+TGG | 0.493099 | 8_3:-2824303 | None:intergenic |
TGGAGGTGTACGAGGATTTG+TGG | 0.493364 | 8_3:+2821971 | Msa1269590:CDS |
AGCTTGGACAATGCAATTGT+TGG | 0.494353 | 8_3:+2822792 | Msa1269590:CDS |
GAACACCATCATAACGTTGT+TGG | 0.495114 | 8_3:-2822020 | None:intergenic |
GCTGTGGCAACATGTGTTGT+TGG | 0.496061 | 8_3:+2823370 | Msa1269590:CDS |
TCTGATTCAATACATAGAAA+AGG | 0.496974 | 8_3:+2823432 | Msa1269590:CDS |
ATTGGGCTTTGAGGCACACT+AGG | 0.501893 | 8_3:-2823867 | None:intergenic |
AATTTCAGAAGGGAAGAGCT+TGG | 0.509011 | 8_3:+2822776 | Msa1269590:intron |
GATGGTGAATATGGTGGTGG+TGG | 0.511384 | 8_3:+2821943 | Msa1269590:CDS |
ATGTATCCAACACACCCATT+GGG | 0.513076 | 8_3:-2823884 | None:intergenic |
CTACAAAAGCTCTGATCCAC+AGG | 0.515810 | 8_3:-2824012 | None:intergenic |
ACAGCTGCTGCAATCTCTGA+TGG | 0.518373 | 8_3:-2823352 | None:intergenic |
TTTGATGATGGTGAATATGG+TGG | 0.519686 | 8_3:+2821937 | Msa1269590:CDS |
CTAGAAACACAATCAAAACT+TGG | 0.521362 | 8_3:-2821883 | None:intergenic |
GTCAAAGAAAATTGGAGGAG+GGG | 0.526134 | 8_3:+2824336 | Msa1269590:three_prime_UTR |
AGAAAGGAAACATTCAATGA+AGG | 0.530701 | 8_3:-2823087 | None:intergenic |
AGAGAGAGAGGGTCTTATGA+AGG | 0.531795 | 8_3:-2821611 | None:intergenic |
GTGATAAAATGAATAGTCCT+TGG | 0.532264 | 8_3:+2824245 | Msa1269590:three_prime_UTR |
ATATGGTGGTGGTGGTTCGG+TGG | 0.533539 | 8_3:+2821951 | Msa1269590:CDS |
TGAACCACCACCACCAGCAT+TGG | 0.536808 | 8_3:-2823934 | None:intergenic |
AGTCATCGATTGGATTCAAA+AGG | 0.537030 | 8_3:+2822173 | Msa1269590:CDS |
ACCTGCAAATCAAGAGGCTG+AGG | 0.539718 | 8_3:-2822862 | None:intergenic |
CTAGAAATGAAGTCATCGAT+TGG | 0.540927 | 8_3:+2822163 | Msa1269590:CDS |
TAGTACTCAGCACATTGAAG+TGG | 0.542367 | 8_3:+2823039 | Msa1269590:CDS |
GATGATGGTGAATATGGTGG+TGG | 0.549715 | 8_3:+2821940 | Msa1269590:CDS |
CAGGGAATTCATACACAGAA+AGG | 0.549830 | 8_3:-2822671 | None:intergenic |
AGTGTGCCTCAAAGCCCAAT+GGG | 0.552076 | 8_3:+2823870 | Msa1269590:CDS |
AAAGAGTGTCAGCAATGGCC+TGG | 0.553578 | 8_3:+2822093 | Msa1269590:CDS |
ATCAGAGATTGCAGCAGCTG+TGG | 0.553736 | 8_3:+2823354 | Msa1269590:CDS |
ATGACCCAACAACGTTATGA+TGG | 0.554188 | 8_3:+2822015 | Msa1269590:CDS |
TAGTGTGCCTCAAAGCCCAA+TGG | 0.559807 | 8_3:+2823869 | Msa1269590:CDS |
AGTCAAAGAAAATTGGAGGA+GGG | 0.559877 | 8_3:+2824335 | Msa1269590:three_prime_UTR |
CAGTCAAAGAAAATTGGAGG+AGG | 0.561515 | 8_3:+2824334 | Msa1269590:three_prime_UTR |
TATCTTCTTCAGTGCAAAGA+AGG | 0.566069 | 8_3:-2821906 | None:intergenic |
GTGAGTCATGAGTGGAAGGT+GGG | 0.576350 | 8_3:+2824223 | Msa1269590:three_prime_UTR |
TCAAAGCCCAATGGGTGTGT+TGG | 0.579780 | 8_3:+2823878 | Msa1269590:CDS |
CTTATATCAAGCACCATCAA+AGG | 0.583083 | 8_3:+2823167 | Msa1269590:CDS |
TCATTGAACAGTGTGTTCAC+TGG | 0.586627 | 8_3:+2823819 | Msa1269590:CDS |
GGTGAGTCATGAGTGGAAGG+TGG | 0.594616 | 8_3:+2824222 | Msa1269590:three_prime_UTR |
CACTGAAGTGAGAGAGTGAG+TGG | 0.594748 | 8_3:+2821676 | Msa1269590:five_prime_UTR |
AAACACTCTTCACTCTGCAA+TGG | 0.596088 | 8_3:-2822054 | None:intergenic |
GAACAGTGTGTTCACTGGCA+AGG | 0.596096 | 8_3:+2823824 | Msa1269590:CDS |
TTGGGCTTTGAGGCACACTA+GGG | 0.596531 | 8_3:-2823866 | None:intergenic |
TAAGGTGAGTCATGAGTGGA+AGG | 0.597213 | 8_3:+2824219 | Msa1269590:three_prime_UTR |
ATCTTTGGCAGCTAAAGTAG+AGG | 0.600255 | 8_3:+2822828 | Msa1269590:CDS |
AATCCTACCTGCAAATCAAG+AGG | 0.610223 | 8_3:-2822868 | None:intergenic |
ACTATAAGGTGAGTCATGAG+TGG | 0.611274 | 8_3:+2824215 | Msa1269590:three_prime_UTR |
CTATTCAAATAATCAGCACC+AGG | 0.612948 | 8_3:-2822111 | None:intergenic |
ATGATGATAAGAGTTCATCA+AGG | 0.613251 | 8_3:+2823120 | Msa1269590:CDS |
TGGTTCGGTGGAGGTGTACG+AGG | 0.618407 | 8_3:+2821963 | Msa1269590:CDS |
ACAAGAGAAAGAGAGAGAGA+GGG | 0.634472 | 8_3:-2821622 | None:intergenic |
GATGACACCAATGCTGGTGG+TGG | 0.635406 | 8_3:+2823927 | Msa1269590:CDS |
AAAAGTGATGACACCAATGC+TGG | 0.640482 | 8_3:+2823921 | Msa1269590:CDS |
ATGGATAGATAAGCACAAAG+AGG | 0.659013 | 8_3:-2822630 | None:intergenic |
GCCAAGAGCATGCAATACCA+AGG | 0.661537 | 8_3:-2824262 | None:intergenic |
TGTGGCAACATGTGTTGTTG+GGG | 0.663318 | 8_3:+2823372 | Msa1269590:CDS |
AGGAAGCTAAACAAAGCCTG+TGG | 0.672496 | 8_3:+2823996 | Msa1269590:CDS |
AGAGATGAGTATGTACAATG+TGG | 0.690153 | 8_3:-2821539 | None:intergenic |
GTAGCCCAGATGCTAAAAGG+AGG | 0.696973 | 8_3:+2823976 | Msa1269590:CDS |
AGTGATGACACCAATGCTGG+TGG | 0.729525 | 8_3:+2823924 | Msa1269590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATTTAGATTATAGATTT+GGG | - | chr8_3:2821789-2821808 | None:intergenic | 10.0% |
!!! | CTTTATTTAGATTATAGATT+TGG | - | chr8_3:2821790-2821809 | None:intergenic | 15.0% |
!! | CAAATCTATAATCTAAATAA+AGG | + | chr8_3:2821788-2821807 | Msa1269590:five_prime_UTR | 15.0% |
!!! | TTTTGTTTAATTGAACTAAA+AGG | + | chr8_3:2821828-2821847 | Msa1269590:five_prime_UTR | 15.0% |
!! | TTTGTTTAATTGAACTAAAA+GGG | + | chr8_3:2821829-2821848 | Msa1269590:five_prime_UTR | 15.0% |
!!! | TTTTTATGAAATCTTTTTGA+TGG | + | chr8_3:2822257-2822276 | Msa1269590:intron | 15.0% |
!!! | TTTTATGAAATCTTTTTGAT+GGG | + | chr8_3:2822258-2822277 | Msa1269590:intron | 15.0% |
!!! | TTTAAGTTGATTAATTTTGA+TGG | + | chr8_3:2823290-2823309 | Msa1269590:intron | 15.0% |
!!! | TATTGGATTTTCTGTTATTT+TGG | + | chr8_3:2821853-2821872 | Msa1269590:five_prime_UTR | 20.0% |
!!! | TTAATTTTTCATCAAAACAG+TGG | + | chr8_3:2822306-2822325 | Msa1269590:intron | 20.0% |
!!! | CAATTTTCTTTGTGATTTAT+AGG | + | chr8_3:2822584-2822603 | Msa1269590:intron | 20.0% |
!! | TTATCTATCCATTAATTACT+TGG | + | chr8_3:2822641-2822660 | Msa1269590:CDS | 20.0% |
!! | AATACATAGAAAAGGTAAAA+TGG | + | chr8_3:2823440-2823459 | Msa1269590:intron | 20.0% |
!! | TATTAACAATGTGTTAATTG+TGG | + | chr8_3:2823748-2823767 | Msa1269590:intron | 20.0% |
!!! | TTTTAACAGTCAAAGAAAAT+TGG | + | chr8_3:2824328-2824347 | Msa1269590:three_prime_UTR | 20.0% |
! | AATTGAACTAAAAGGGTTAT+TGG | + | chr8_3:2821836-2821855 | Msa1269590:five_prime_UTR | 25.0% |
!!! | GATTTTCTGTTATTTTGGAA+TGG | + | chr8_3:2821858-2821877 | Msa1269590:exon | 25.0% |
!! | ATATTGATTGTGAAAACTGA+AGG | + | chr8_3:2822220-2822239 | Msa1269590:intron | 25.0% |
! | TTGTGATATGTATCCATAAA+GGG | - | chr8_3:2822375-2822394 | None:intergenic | 25.0% |
! | ATTGTGATATGTATCCATAA+AGG | - | chr8_3:2822376-2822395 | None:intergenic | 25.0% |
! | TCGTTATTCATTAACTTACA+GGG | - | chr8_3:2822692-2822711 | None:intergenic | 25.0% |
! | GAAGTTCAACACAAAAAAAT+AGG | + | chr8_3:2822712-2822731 | Msa1269590:intron | 25.0% |
! | TTATGTTTCCAATTTCAGAA+GGG | + | chr8_3:2822766-2822785 | Msa1269590:intron | 25.0% |
! | CATCATCATTAATCTTAGAA+AGG | - | chr8_3:2823106-2823125 | None:intergenic | 25.0% |
! | AGTGAAAACAATCATGAATT+AGG | + | chr8_3:2823263-2823282 | Msa1269590:intron | 25.0% |
! | TCTGATTCAATACATAGAAA+AGG | + | chr8_3:2823432-2823451 | Msa1269590:CDS | 25.0% |
!! | TACATTGTTTTCTTGTCATT+TGG | - | chr8_3:2823475-2823494 | None:intergenic | 25.0% |
! | CTCATATAACAACTTAAACA+AGG | + | chr8_3:2823625-2823644 | Msa1269590:intron | 25.0% |
! | ATTATTGAAGTGTGTTGAAA+AGG | + | chr8_3:2823785-2823804 | Msa1269590:CDS | 25.0% |
!! | GAATTTTACCATATTCCATA+AGG | + | chr8_3:2824048-2824067 | Msa1269590:three_prime_UTR | 25.0% |
!!! | TTTTTTTGGTATTGAACTGA+GGG | - | chr8_3:2824121-2824140 | None:intergenic | 25.0% |
! | AATGCAAAATATTTAACAGC+TGG | - | chr8_3:2824306-2824325 | None:intergenic | 25.0% |
! | TTTTAATGATGTTGTGTGTG+TGG | - | chr8_3:2821702-2821721 | None:intergenic | 30.0% |
CTAGAAACACAATCAAAACT+TGG | - | chr8_3:2821886-2821905 | None:intergenic | 30.0% | |
!!! | GTTTTTGATGATGGTGAATA+TGG | + | chr8_3:2821934-2821953 | Msa1269590:CDS | 30.0% |
TATTTGAATAGGTTGCAGTT+TGG | + | chr8_3:2822123-2822142 | Msa1269590:CDS | 30.0% | |
! | ATTTTTCATCAAAACAGTGG+CGG | + | chr8_3:2822309-2822328 | Msa1269590:intron | 30.0% |
TTCAATGAACTATCCCTTTA+TGG | + | chr8_3:2822359-2822378 | Msa1269590:intron | 30.0% | |
! | ATCCATTGCTTGATAACTAT+TGG | + | chr8_3:2822411-2822430 | Msa1269590:intron | 30.0% |
TCATCAATTCATCAGATACA+AGG | - | chr8_3:2822442-2822461 | None:intergenic | 30.0% | |
! | TGATGAATTGATGACTTGAA+TGG | + | chr8_3:2822448-2822467 | Msa1269590:intron | 30.0% |
TAGCACATTTGATTGATGAA+TGG | + | chr8_3:2822481-2822500 | Msa1269590:intron | 30.0% | |
!! | ATTGATGAATGGATTGAGAT+TGG | + | chr8_3:2822492-2822511 | Msa1269590:intron | 30.0% |
GAATCGATCCAAGTAATTAA+TGG | - | chr8_3:2822652-2822671 | None:intergenic | 30.0% | |
CTCGTTATTCATTAACTTAC+AGG | - | chr8_3:2822693-2822712 | None:intergenic | 30.0% | |
! | ATAGGCTTTATATTCTGCAT+TGG | + | chr8_3:2822730-2822749 | Msa1269590:intron | 30.0% |
GTTATGTTTCCAATTTCAGA+AGG | + | chr8_3:2822765-2822784 | Msa1269590:intron | 30.0% | |
AACTTGTCAATTTCAATGCT+TGG | + | chr8_3:2822894-2822913 | Msa1269590:intron | 30.0% | |
! | TTTAGCTTCAAACACAAACT+TGG | - | chr8_3:2822997-2823016 | None:intergenic | 30.0% |
AAACATTCAATGAAGGAGAA+TGG | - | chr8_3:2823083-2823102 | None:intergenic | 30.0% | |
AGAAAGGAAACATTCAATGA+AGG | - | chr8_3:2823090-2823109 | None:intergenic | 30.0% | |
ATGATGATAAGAGTTCATCA+AGG | + | chr8_3:2823120-2823139 | Msa1269590:CDS | 30.0% | |
AAACATTTAGGTACCTTTGA+TGG | - | chr8_3:2823183-2823202 | None:intergenic | 30.0% | |
ACATAGAAAAGGTAAAATGG+TGG | + | chr8_3:2823443-2823462 | Msa1269590:intron | 30.0% | |
!! | TGTTTTCTTGTCATTTGGAA+AGG | - | chr8_3:2823470-2823489 | None:intergenic | 30.0% |
TTAGTTCATACATACTCTCA+AGG | + | chr8_3:2823513-2823532 | Msa1269590:intron | 30.0% | |
GTGTTAATTGTGGTTATTAC+AGG | + | chr8_3:2823758-2823777 | Msa1269590:intron | 30.0% | |
GAAAGTAACCTTATGGAATA+TGG | - | chr8_3:2824059-2824078 | None:intergenic | 30.0% | |
!!! | ACACATAATGTCCTTTTTTG+GGG | - | chr8_3:2824081-2824100 | None:intergenic | 30.0% |
!!! | CACACATAATGTCCTTTTTT+GGG | - | chr8_3:2824082-2824101 | None:intergenic | 30.0% |
!!! | ACACACATAATGTCCTTTTT+TGG | - | chr8_3:2824083-2824102 | None:intergenic | 30.0% |
! | AGGACATTATGTGTGTTTTA+TGG | + | chr8_3:2824087-2824106 | Msa1269590:three_prime_UTR | 30.0% |
! | CATTATGTGTGTTTTATGGA+AGG | + | chr8_3:2824091-2824110 | Msa1269590:three_prime_UTR | 30.0% |
!!! | TTTTTTGGTATTGAACTGAG+GGG | - | chr8_3:2824120-2824139 | None:intergenic | 30.0% |
!!! | CTTTTTTTGGTATTGAACTG+AGG | - | chr8_3:2824122-2824141 | None:intergenic | 30.0% |
CTCAGTTCAATACCAAAAAA+AGG | + | chr8_3:2824120-2824139 | Msa1269590:three_prime_UTR | 30.0% | |
!!! | GCTATATCTCTTCCTTTTTT+TGG | - | chr8_3:2824135-2824154 | None:intergenic | 30.0% |
!! | CAAAGAGTACCAAAACTATA+AGG | + | chr8_3:2824201-2824220 | Msa1269590:three_prime_UTR | 30.0% |
GTGATAAAATGAATAGTCCT+TGG | + | chr8_3:2824245-2824264 | Msa1269590:three_prime_UTR | 30.0% | |
TAACAGTCAAAGAAAATTGG+AGG | + | chr8_3:2824331-2824350 | Msa1269590:three_prime_UTR | 30.0% | |
AGAGATGAGTATGTACAATG+TGG | - | chr8_3:2821542-2821561 | None:intergenic | 35.0% | |
!! | TATGGTTTGGTTCGAAGTTT+CGG | - | chr8_3:2821654-2821673 | None:intergenic | 35.0% |
TATCTTCTTCAGTGCAAAGA+AGG | - | chr8_3:2821909-2821928 | None:intergenic | 35.0% | |
!! | GATAGCAGTGTTTTTGATGA+TGG | + | chr8_3:2821925-2821944 | Msa1269590:CDS | 35.0% |
!! | TTTGATGATGGTGAATATGG+TGG | + | chr8_3:2821937-2821956 | Msa1269590:CDS | 35.0% |
AACACCATCATAACGTTGTT+GGG | - | chr8_3:2822022-2822041 | None:intergenic | 35.0% | |
CTATTCAAATAATCAGCACC+AGG | - | chr8_3:2822114-2822133 | None:intergenic | 35.0% | |
!! | CTGGTGCTGATTATTTGAAT+AGG | + | chr8_3:2822112-2822131 | Msa1269590:CDS | 35.0% |
! | GTTTGGAGATTTGGATTTTC+AGG | + | chr8_3:2822140-2822159 | Msa1269590:CDS | 35.0% |
CTAGAAATGAAGTCATCGAT+TGG | + | chr8_3:2822163-2822182 | Msa1269590:CDS | 35.0% | |
! | AGTCATCGATTGGATTCAAA+AGG | + | chr8_3:2822173-2822192 | Msa1269590:CDS | 35.0% |
!!! | CGTTTTAATTGGGTTTGGAT+TGG | + | chr8_3:2822335-2822354 | Msa1269590:intron | 35.0% |
GTCCAATAGTTATCAAGCAA+TGG | - | chr8_3:2822416-2822435 | None:intergenic | 35.0% | |
! | GGATTGAGATTGGATTAGAT+TGG | + | chr8_3:2822502-2822521 | Msa1269590:intron | 35.0% |
! | GAGATTGGATTAGATTGGAT+TGG | + | chr8_3:2822507-2822526 | Msa1269590:intron | 35.0% |
TTATAGGTTCGAGCACATTT+CGG | + | chr8_3:2822600-2822619 | Msa1269590:intron | 35.0% | |
ATGGATAGATAAGCACAAAG+AGG | - | chr8_3:2822633-2822652 | None:intergenic | 35.0% | |
AGCTAAAACCATTCAGAGAA+TGG | + | chr8_3:2823010-2823029 | Msa1269590:CDS | 35.0% | |
TAAAAGCTCCATTCTCTGAA+TGG | - | chr8_3:2823021-2823040 | None:intergenic | 35.0% | |
CTTATATCAAGCACCATCAA+AGG | + | chr8_3:2823167-2823186 | Msa1269590:CDS | 35.0% | |
TCACTTGAGCAATGAAGTTA+GGG | - | chr8_3:2823210-2823229 | None:intergenic | 35.0% | |
TTCACTTGAGCAATGAAGTT+AGG | - | chr8_3:2823211-2823230 | None:intergenic | 35.0% | |
! | ATGATTGTTTTCACTGCAAG+GGG | - | chr8_3:2823258-2823277 | None:intergenic | 35.0% |
! | CATGATTGTTTTCACTGCAA+GGG | - | chr8_3:2823259-2823278 | None:intergenic | 35.0% |
! | TCATGATTGTTTTCACTGCA+AGG | - | chr8_3:2823260-2823279 | None:intergenic | 35.0% |
TTTGCTACCATCAATTGCTT+GGG | - | chr8_3:2823401-2823420 | None:intergenic | 35.0% | |
! | ATTTGCTACCATCAATTGCT+TGG | - | chr8_3:2823402-2823421 | None:intergenic | 35.0% |
!! | TTTTGGGGAAAGTAACCTTA+TGG | - | chr8_3:2824066-2824085 | None:intergenic | 35.0% |
! | AAGGTTACTTTCCCCAAAAA+AGG | + | chr8_3:2824067-2824086 | Msa1269590:three_prime_UTR | 35.0% |
! | CATGACTCACCTTATAGTTT+TGG | - | chr8_3:2824213-2824232 | None:intergenic | 35.0% |
AGTCAAAGAAAATTGGAGGA+GGG | + | chr8_3:2824335-2824354 | Msa1269590:three_prime_UTR | 35.0% | |
!! | GTAGAGTCTGAGATTTTCTT+TGG | + | chr8_3:2824389-2824408 | Msa1269590:three_prime_UTR | 35.0% |
!!! | ACGCCTCTTTTTAGGGTAAA+GGG | - | chr8_3:2821585-2821604 | None:intergenic | 40.0% |
!!! | AACGCCTCTTTTTAGGGTAA+AGG | - | chr8_3:2821586-2821605 | None:intergenic | 40.0% |
!! | TTACCCTAAAAAGAGGCGTT+CGG | + | chr8_3:2821586-2821605 | Msa1269590:five_prime_UTR | 40.0% |
ACAAGAGAAAGAGAGAGAGA+GGG | - | chr8_3:2821625-2821644 | None:intergenic | 40.0% | |
AACAAGAGAAAGAGAGAGAG+AGG | - | chr8_3:2821626-2821645 | None:intergenic | 40.0% | |
TCACTTCAGTGTCTATGGTT+TGG | - | chr8_3:2821667-2821686 | None:intergenic | 40.0% | |
ATGACCCAACAACGTTATGA+TGG | + | chr8_3:2822015-2822034 | Msa1269590:CDS | 40.0% | |
GAACACCATCATAACGTTGT+TGG | - | chr8_3:2822023-2822042 | None:intergenic | 40.0% | |
AAACACTCTTCACTCTGCAA+TGG | - | chr8_3:2822057-2822076 | None:intergenic | 40.0% | |
!! | ATTGCAGAGTGAAGAGTGTT+TGG | + | chr8_3:2822056-2822075 | Msa1269590:CDS | 40.0% |
!! | AGAGTGTTTGGTTCTGATGT+TGG | + | chr8_3:2822068-2822087 | Msa1269590:CDS | 40.0% |
!! | TGGAAAAAGAGTGTCAGCAA+TGG | + | chr8_3:2822088-2822107 | Msa1269590:CDS | 40.0% |
TAGGTTGCAGTTTGGAGATT+TGG | + | chr8_3:2822131-2822150 | Msa1269590:CDS | 40.0% | |
CAGGGAATTCATACACAGAA+AGG | - | chr8_3:2822674-2822693 | None:intergenic | 40.0% | |
!! | AAGCTCTTCCCTTCTGAAAT+TGG | - | chr8_3:2822777-2822796 | None:intergenic | 40.0% |
AATTTCAGAAGGGAAGAGCT+TGG | + | chr8_3:2822776-2822795 | Msa1269590:intron | 40.0% | |
AGCTTGGACAATGCAATTGT+TGG | + | chr8_3:2822792-2822811 | Msa1269590:CDS | 40.0% | |
ATCTTTGGCAGCTAAAGTAG+AGG | + | chr8_3:2822828-2822847 | Msa1269590:CDS | 40.0% | |
AATCCTACCTGCAAATCAAG+AGG | - | chr8_3:2822871-2822890 | None:intergenic | 40.0% | |
!! | CTTGATTTGCAGGTAGGATT+TGG | + | chr8_3:2822871-2822890 | Msa1269590:intron | 40.0% |
!! | GTCGATTTTTGTGTGCAGAT+TGG | + | chr8_3:2822966-2822985 | Msa1269590:intron | 40.0% |
TAGTACTCAGCACATTGAAG+TGG | + | chr8_3:2823039-2823058 | Msa1269590:CDS | 40.0% | |
AGTTAGGGAGGGAAACATTT+AGG | - | chr8_3:2823195-2823214 | None:intergenic | 40.0% | |
TTGAGCAATGAAGTTAGGGA+GGG | - | chr8_3:2823206-2823225 | None:intergenic | 40.0% | |
! | TGATGGTGTGAATTCAATGC+AGG | + | chr8_3:2823307-2823326 | Msa1269590:intron | 40.0% |
CACTGTTCAATGACATCTCT+TGG | - | chr8_3:2823812-2823831 | None:intergenic | 40.0% | |
TCATTGAACAGTGTGTTCAC+TGG | + | chr8_3:2823819-2823838 | Msa1269590:CDS | 40.0% | |
ATGTATCCAACACACCCATT+GGG | - | chr8_3:2823887-2823906 | None:intergenic | 40.0% | |
AATGTATCCAACACACCCAT+TGG | - | chr8_3:2823888-2823907 | None:intergenic | 40.0% | |
AAAAGTGATGACACCAATGC+TGG | + | chr8_3:2823921-2823940 | Msa1269590:CDS | 40.0% | |
! | TCAGAGCTTTTGTAGTCATG+TGG | + | chr8_3:2824020-2824039 | Msa1269590:exon | 40.0% |
! | CTTTTGTAGTCATGTGGCAT+GGG | + | chr8_3:2824026-2824045 | Msa1269590:exon | 40.0% |
ACTATAAGGTGAGTCATGAG+TGG | + | chr8_3:2824215-2824234 | Msa1269590:three_prime_UTR | 40.0% | |
CAGTCAAAGAAAATTGGAGG+AGG | + | chr8_3:2824334-2824353 | Msa1269590:three_prime_UTR | 40.0% | |
GTCAAAGAAAATTGGAGGAG+GGG | + | chr8_3:2824336-2824355 | Msa1269590:three_prime_UTR | 40.0% | |
! | TTTAGGGTAAAGGGGTGAGT+GGG | - | chr8_3:2821576-2821595 | None:intergenic | 45.0% |
!!! | TTTTAGGGTAAAGGGGTGAG+TGG | - | chr8_3:2821577-2821596 | None:intergenic | 45.0% |
CACCCCTTTACCCTAAAAAG+AGG | + | chr8_3:2821579-2821598 | Msa1269590:five_prime_UTR | 45.0% | |
!!! | CGCCTCTTTTTAGGGTAAAG+GGG | - | chr8_3:2821584-2821603 | None:intergenic | 45.0% |
! | GAACCGAACGCCTCTTTTTA+GGG | - | chr8_3:2821592-2821611 | None:intergenic | 45.0% |
! | AGAGAGAGAGGGTCTTATGA+AGG | - | chr8_3:2821614-2821633 | None:intergenic | 45.0% |
CTCTCTCACTTCAGTGTCTA+TGG | - | chr8_3:2821672-2821691 | None:intergenic | 45.0% | |
! | GATGATGGTGAATATGGTGG+TGG | + | chr8_3:2821940-2821959 | Msa1269590:CDS | 45.0% |
!! | TGAATATGGTGGTGGTGGTT+CGG | + | chr8_3:2821948-2821967 | Msa1269590:CDS | 45.0% |
TTTCATCAAAACAGTGGCGG+CGG | + | chr8_3:2822312-2822331 | Msa1269590:intron | 45.0% | |
! | GTTCGAGCACATTTCGGTTT+TGG | + | chr8_3:2822606-2822625 | Msa1269590:CDS | 45.0% |
!! | GGCTGTAGCTTGCTTATCTT+TGG | + | chr8_3:2822813-2822832 | Msa1269590:CDS | 45.0% |
CTTGAGCAATGAAGTTAGGG+AGG | - | chr8_3:2823207-2823226 | None:intergenic | 45.0% | |
! | TTGTTTTCACTGCAAGGGGT+TGG | - | chr8_3:2823254-2823273 | None:intergenic | 45.0% |
CAATGCAGGTCTTGACTTCT+TGG | + | chr8_3:2823321-2823340 | Msa1269590:intron | 45.0% | |
! | CTGTGGCAACATGTGTTGTT+GGG | + | chr8_3:2823371-2823390 | Msa1269590:CDS | 45.0% |
! | TGTGGCAACATGTGTTGTTG+GGG | + | chr8_3:2823372-2823391 | Msa1269590:CDS | 45.0% |
GTAGTAGCCCAGATGCTAAA+AGG | + | chr8_3:2823973-2823992 | Msa1269590:CDS | 45.0% | |
! | GCTTCCTCCTTTTAGCATCT+GGG | - | chr8_3:2823983-2824002 | None:intergenic | 45.0% |
! | AGCTTCCTCCTTTTAGCATC+TGG | - | chr8_3:2823984-2824003 | None:intergenic | 45.0% |
AGGAAGCTAAACAAAGCCTG+TGG | + | chr8_3:2823996-2824015 | Msa1269590:CDS | 45.0% | |
! | CTACAAAAGCTCTGATCCAC+AGG | - | chr8_3:2824015-2824034 | None:intergenic | 45.0% |
! | GCTTTTGTAGTCATGTGGCA+TGG | + | chr8_3:2824025-2824044 | Msa1269590:exon | 45.0% |
TAAGGTGAGTCATGAGTGGA+AGG | + | chr8_3:2824219-2824238 | Msa1269590:three_prime_UTR | 45.0% | |
TCCTTGGTATTGCATGCTCT+TGG | + | chr8_3:2824261-2824280 | Msa1269590:three_prime_UTR | 45.0% | |
TTAGGGTAAAGGGGTGAGTG+GGG | - | chr8_3:2821575-2821594 | None:intergenic | 50.0% | |
! | GGAACCGAACGCCTCTTTTT+AGG | - | chr8_3:2821593-2821612 | None:intergenic | 50.0% |
CACTGAAGTGAGAGAGTGAG+TGG | + | chr8_3:2821676-2821695 | Msa1269590:five_prime_UTR | 50.0% | |
!! | GATGGTGAATATGGTGGTGG+TGG | + | chr8_3:2821943-2821962 | Msa1269590:CDS | 50.0% |
! | TGGAGGTGTACGAGGATTTG+TGG | + | chr8_3:2821971-2821990 | Msa1269590:CDS | 50.0% |
ACGAGGATTTGTGGCGTTCT+AGG | + | chr8_3:2821980-2821999 | Msa1269590:CDS | 50.0% | |
CTCTGCAATGGCAACTCATC+AGG | - | chr8_3:2822045-2822064 | None:intergenic | 50.0% | |
!! | AAAGAGTGTCAGCAATGGCC+TGG | + | chr8_3:2822093-2822112 | Msa1269590:CDS | 50.0% |
!!! | GGCGGCGTTTTAATTGGGTT+TGG | + | chr8_3:2822330-2822349 | Msa1269590:intron | 50.0% |
!! | TCCTCAGCCTCTTGATTTGC+AGG | + | chr8_3:2822861-2822880 | Msa1269590:CDS | 50.0% |
ACCTGCAAATCAAGAGGCTG+AGG | - | chr8_3:2822865-2822884 | None:intergenic | 50.0% | |
!! | CAGCCTCTTGATTTGCAGGT+AGG | + | chr8_3:2822865-2822884 | Msa1269590:intron | 50.0% |
ACAGCTGCTGCAATCTCTGA+TGG | - | chr8_3:2823355-2823374 | None:intergenic | 50.0% | |
ATCAGAGATTGCAGCAGCTG+TGG | + | chr8_3:2823354-2823373 | Msa1269590:CDS | 50.0% | |
GCTGTGGCAACATGTGTTGT+TGG | + | chr8_3:2823370-2823389 | Msa1269590:CDS | 50.0% | |
GGGGAAACCCAAGCAATTGA+TGG | + | chr8_3:2823391-2823410 | Msa1269590:CDS | 50.0% | |
GAACAGTGTGTTCACTGGCA+AGG | + | chr8_3:2823824-2823843 | Msa1269590:CDS | 50.0% | |
!! | TTGGGCTTTGAGGCACACTA+GGG | - | chr8_3:2823869-2823888 | None:intergenic | 50.0% |
!! | ATTGGGCTTTGAGGCACACT+AGG | - | chr8_3:2823870-2823889 | None:intergenic | 50.0% |
TAGTGTGCCTCAAAGCCCAA+TGG | + | chr8_3:2823869-2823888 | Msa1269590:CDS | 50.0% | |
AGTGTGCCTCAAAGCCCAAT+GGG | + | chr8_3:2823870-2823889 | Msa1269590:CDS | 50.0% | |
AACACACCCATTGGGCTTTG+AGG | - | chr8_3:2823879-2823898 | None:intergenic | 50.0% | |
TCAAAGCCCAATGGGTGTGT+TGG | + | chr8_3:2823878-2823897 | Msa1269590:CDS | 50.0% | |
AGTGATGACACCAATGCTGG+TGG | + | chr8_3:2823924-2823943 | Msa1269590:CDS | 50.0% | |
GTAGCCCAGATGCTAAAAGG+AGG | + | chr8_3:2823976-2823995 | Msa1269590:CDS | 50.0% | |
GTGAGTCATGAGTGGAAGGT+GGG | + | chr8_3:2824223-2824242 | Msa1269590:three_prime_UTR | 50.0% | |
! | GCCAAGAGCATGCAATACCA+AGG | - | chr8_3:2824265-2824284 | None:intergenic | 50.0% |
TAAAGGGGTGAGTGGGGTTG+AGG | - | chr8_3:2821569-2821588 | None:intergenic | 55.0% | |
!! | ATATGGTGGTGGTGGTTCGG+TGG | + | chr8_3:2821951-2821970 | Msa1269590:CDS | 55.0% |
!! | AGTGGCGGCGGCGTTTTAAT+TGG | + | chr8_3:2822324-2822343 | Msa1269590:intron | 55.0% |
!!! | GTGGCGGCGGCGTTTTAATT+GGG | + | chr8_3:2822325-2822344 | Msa1269590:intron | 55.0% |
GATGACACCAATGCTGGTGG+TGG | + | chr8_3:2823927-2823946 | Msa1269590:CDS | 55.0% | |
TGAACCACCACCACCAGCAT+TGG | - | chr8_3:2823937-2823956 | None:intergenic | 55.0% | |
GGTGAGTCATGAGTGGAAGG+TGG | + | chr8_3:2824222-2824241 | Msa1269590:three_prime_UTR | 55.0% | |
!! | TGGTTCGGTGGAGGTGTACG+AGG | + | chr8_3:2821963-2821982 | Msa1269590:CDS | 60.0% |
!! | GACACCAATGCTGGTGGTGG+TGG | + | chr8_3:2823930-2823949 | Msa1269590:CDS | 60.0% |
!! | TGGTGGTGGTGGTTCGGTGG+AGG | + | chr8_3:2821954-2821973 | Msa1269590:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 2821533 | 2824452 | 2821533 | ID=Msa1269590;Name=Msa1269590 |
chr8_3 | mRNA | 2821533 | 2824452 | 2821533 | ID=Msa1269590-mRNA-1;Parent=Msa1269590;Name=Msa1269590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=344|1|1|1|1|1|6|418|362 |
chr8_3 | exon | 2821533 | 2822194 | 2821533 | ID=Msa1269590-mRNA-1:exon:924;Parent=Msa1269590-mRNA-1 |
chr8_3 | exon | 2822606 | 2822692 | 2822606 | ID=Msa1269590-mRNA-1:exon:925;Parent=Msa1269590-mRNA-1 |
chr8_3 | exon | 2822784 | 2822882 | 2822784 | ID=Msa1269590-mRNA-1:exon:926;Parent=Msa1269590-mRNA-1 |
chr8_3 | exon | 2822984 | 2823188 | 2822984 | ID=Msa1269590-mRNA-1:exon:927;Parent=Msa1269590-mRNA-1 |
chr8_3 | exon | 2823329 | 2823453 | 2823329 | ID=Msa1269590-mRNA-1:exon:928;Parent=Msa1269590-mRNA-1 |
chr8_3 | exon | 2823780 | 2824452 | 2823780 | ID=Msa1269590-mRNA-1:exon:929;Parent=Msa1269590-mRNA-1 |
chr8_3 | five_prime_UTR | 2821533 | 2821876 | 2821533 | ID=Msa1269590-mRNA-1:five_prime_utr;Parent=Msa1269590-mRNA-1 |
chr8_3 | CDS | 2821877 | 2822194 | 2821877 | ID=Msa1269590-mRNA-1:cds;Parent=Msa1269590-mRNA-1 |
chr8_3 | CDS | 2822606 | 2822692 | 2822606 | ID=Msa1269590-mRNA-1:cds;Parent=Msa1269590-mRNA-1 |
chr8_3 | CDS | 2822784 | 2822882 | 2822784 | ID=Msa1269590-mRNA-1:cds;Parent=Msa1269590-mRNA-1 |
chr8_3 | CDS | 2822984 | 2823188 | 2822984 | ID=Msa1269590-mRNA-1:cds;Parent=Msa1269590-mRNA-1 |
chr8_3 | CDS | 2823329 | 2823453 | 2823329 | ID=Msa1269590-mRNA-1:cds;Parent=Msa1269590-mRNA-1 |
chr8_3 | CDS | 2823780 | 2824034 | 2823780 | ID=Msa1269590-mRNA-1:cds;Parent=Msa1269590-mRNA-1 |
chr8_3 | three_prime_UTR | 2824035 | 2824452 | 2824035 | ID=Msa1269590-mRNA-1:three_prime_utr;Parent=Msa1269590-mRNA-1 |
Gene Sequence |
Protein sequence |